Minor issue but the below error code gives the wrong flag for mixtures of species, it should be --organism-file
amrrules: error: You must specify --input, --output-prefix, and --organism (or --organism_file) unless using --download-resources.
Thanks for developing this great resource!
Minor issue but the below error code gives the wrong flag for mixtures of species, it should be
--organism-fileamrrules: error: You must specify --input, --output-prefix, and --organism (or --organism_file) unless using --download-resources.Thanks for developing this great resource!