TransFew/transfew.yaml at main · BioinfoMachineLearning/TransFew · GitHub

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name: transfew
channels:
  - pyg
  - pytorch
  - bioconda
  - nvidia
  - conda-forge
  - defaults
dependencies:
  - diamond=0.9.14
  - hhsuite=3.3.0
  - mmseqs2=13.45111
  - networkx=3.1
  - numpy=1.23.5
  - pillow=9.4.0
  - pip=23.2.1
  - pyg=2.3.1
  - python=3.10.0
  - pytorch=2.0.1
  - scikit-learn=1.3.0
  - scipy=1.10.1
  - setuptools=68.0.0
  - torchaudio=2.0.2
  - torchmetrics=1.2.0
  - torchtriton=2.0.0
  - torchvision=0.15.2
  - tqdm=4.65.0
  - pip:
      - biopandas==0.5.1.dev0
      - biopython==1.81
      - fair-esm==2.0.0
      - h5py==3.10.0
      - huggingface-hub==0.16.4
      - keras==2.15.0
      - keras-preprocessing==1.1.2
      - matplotlib==3.8.0
      - num2words==0.5.13
      - obonet==1.0.0
      - pandas==1.5.3
      - seaborn==0.12.2
      - tensorflow==2.15.0.post1
      - torch-cluster==1.6.1
      - torch-scatter==2.1.1
      - torch-sparse==0.6.17
      - torch-spline-conv==1.2.2
      - torchsummary==1.5.1
      - torchviz==0.0.2
      - wandb==0.15.12
      - xlsxwriter==3.1.5