User’s Guide for the Fertilizer
-Emission Scenario Tool for CMAQ (FEST-C) Version 1.4
-
-
-
-
-
-
-
-
-
-
Limei Ran1, Ellen Cooter1,
-Dongmei Yang2, Verel Benson3, Yongping Yuan4, Adel
-Hanna2, Val Garcia1
-
-
-
-
-
-
1Atmospheric Model Application and
-Analysis Branch, Computational Exposure Division, USEPA/ORD/NERL, Research
-Triangle Park, NC 27711
-
-
-
-
2Institute for the Environment, University
-of North Carolina at Chapel Hill, 100 Europa Dr., Chapel Hill, NC 27517
-
-
-
-
3Benson Consulting, Columbia, Missouri,
-USA
-
-
-
-
4Integrated Environmental Modeling Branch,
-Systems Exposure Division, USEPA/ORD/NERL, Research Triangle Park, NC 27711
-
-
-
-
-
-
-
-
-
-
Date: September
-20, 2018
-
-
-
-
-
-
-
Disclaimer
-
-
-
-
The information in this operational guidance document has
-been funded wholly or in part by the United States Environmental Protection
-Agency. The draft version of this document has not been subjected to the
-Agency’s peer and administrative review, nor has it been approved for
-publication as an EPA document. The draft document has been subjected to review
-by the Community Modeling and Analysis System Center only; this content has not
-yet been approved by the EPA. Mention of trade names or commercial products
-does not constitute endorsement or recommendation for use.
-
-
-
-
Acknowledgments
-
-
-
-
The development of the FEST-C
-system is currently being supported by the U.S. EPA’s Computational Exposure
-Division (CED) under U.S. EPA contract EP-W-16-014, “Operation of the Center
-for Community Air Quality Modeling and Analysis (CMAS)” in support of Office of
-Research and Development Air Climate and Energy, Safe and Sustainable Waters
-and Safe and Healthy Communities Research Programs. This work was also
-supported under prior U.S. EPA contracts: EP W 09 023, “Operation of the Center
-for Community Air Quality Modeling and Analysis (CMAS),” and EP D-12-044,
-“Emissions, Air Quality, and Meteorological Modeling Support (EMAQ).” We
-greatly appreciate the continuing and generous intellectual support we have
-received from Dr. Jimmy R. Williams at Texas A&M AgriLife Research,
-Blackland Research & Extension Center (Temple, TX). We thank Joe Slater,
-Manager of Fertilizer/AG Lime Control Services, University of Missouri
-Agricultural Experiment Station at Columbia, MO, for his invaluable insights
-regarding fertilizer sales and use. Finally, we thank Dr. Qun He for his
-design and support on the FEST-C interface.
The Fertilizer
-Emission Scenario Tool for CMAQ (FEST-C) (http://www.cmascenter.org/fest-c/)
-is a Java-based interface system that facilitates the integration of
-agriculture, atmosphere, and hydrology simulations at large scales. With an
-adapted Environmental Policy Integrated Climate (EPIC) model (http://epicapex.tamu.edu/
-epic/) for grassland and crop production, the system is primarily
-used to simulate daily soil carbon (C), nitrogen (N), and phosphorus (P) cycles
-on agricultural lands with atmospheric conditions and management practices
-including fertilization and irrigation. The FEST-C interface
-with simple tool buttons guides users through EPIC simulations and output
-extractions to generate the required input for bidirectional NH3
-modeling performed using the Community
-Multiscale Air Quality (CMAQ) modeling system (http://www.cmascenter.org/cmaq/). In addition to its application for air quality
-modeling, the system has been enhanced to integrate with the Soil and Water
-Assessment Tool (SWAT, https://swat.tamu.edu/)
-for watershed hydrological simulations. FEST-C enables the extraction of
-SWAT-ready input files with nutrients and water runoffs from agricultural lands
-and weather and N deposition from atmospheric models for simulating nitrogen
-fate and transport in watersheds. The FEST-C system is developed by EPA
-scientists, Institute for the Environment at the University of North Carolina
-at Chapel Hill (UNC), and Benson Consulting with the help from the Texas A&M AgriLife Research. UNC and Benson
-Consulting were supported under contract to the U.S. EPA Office of Research and
-Development.
-
-
The EPA EPIC
-implementation requires no previous estimates of fertilizer application; it estimates
-daily soil N conditions with fertilizer applications based entirely on
-simulated plant demand in response to local soil and weather conditions. The
-FEST-C interface associates EPIC simulations spatially to the CMAQ domain covering
-the conterminous United States (CONUS) and resolution through the current
-release of the Spatial Allocator (SA) Raster Tools system (http://www.cmascenter.org/sa-tools/)
-that has been developed under the Community Modeling and Analysis System (CMAS)
-Center. Figure 1 displays the process diagram of FEST-C linkage with the Weather
-Research and Forecasting (WRF, http://www2.mmm.ucar.edu/wrf/users/),
-CMAQ, and SWAT modeling systems. The Biogenic Emissions Landcover Database
-version 4 (BELD4), which is generated using the BELD4 tool in the SA Raster
-Tools system, is consistently used in the FEST-C system as well as the WRF/CMAQ
-modeling system. Previous WRF/CMAQ system results provide daily weather inputs
-and N deposition (optional), to the FEST-C system. In return, FEST-C generates
-soil properties (e.g. texture, moisture, and pH) and daily ammonium and nitrate
-N pool status for specific crops assigned to agricultural land areas in each of
-the CMAQ bidirectional NH3 modeling grids. With the integrated
-land-air-water models, FEST-C can be used in assessing not only the impacts of
-agricultural fertilization and management practices on water quantity and
-quality, air quality (NH3), and climate (N2O), but also
-the impacts of meteorology/climate and air quality (N deposition) on crop
-yield, soil erosion, watershed hydrology and quality, and overall C-N-P
-biogeochemical status of the agricultural ecosystem.
-
-
-
-
Figure 1. The FEST-C process diagram. The system
-works for any domains covering the CONUS and for any of the four WRF
-projections (longitude/latitude, Lambert Conformal Conic, Universal Polar Stereographic,
-and Mercator).
The version 1.4 release
-of the FEST-C system (FEST-C v1.4), which includes Java interface programs,
-EPIC FORTRAN codes, and associated data sets, was developed for Linux-based
-operating systems. The FEST-C Java interface is licensed under the Gnu Public
-License (GPL) version 3. The downloaded FEST-C system contains the following
-two directories:
-
-
·
-festc – contains the Java-based interface.
-
-
·
-epic – stores EPIC model version 0509, which has been modified to
-meet CMAQ input requirements; and related utilities and data for FEST-C v1.4.
-The original EPIC model description can be obtained from the Texas A&M
-AgriLife Research web site (http://epicapex.tamu.edu/files/2013/02/epic0509usermanualupdated.pdf
-). The documentation of the modified EPIC modeling system for CMAQ is included
-in the release of the FEST-C system. It provides detailed information on how
-this particular application of EPIC was developed.
-
-
The FEST-C system
-requires that the SA Raster Tools system be installed on the same computer system
-where FEST-C resides. For visualization, users can configure FEST-C to view NetCDF
-files using the Visualization Environment for Rich Data Interpretation (VERDI)
-or NCVIEW. Both the SA Raster Tools and the VERDI system and their
-documentation can be obtained from the CMAS web site (https://www.cmascenter.org/).
Users need to
-untar the obtained FEST-C and SA packages in their system from the CMAS Center
-Software Clearinghouse, https://www.cmascenter.org. The
-programs under FEST-C do not need any compiling, as the system comes with
-static compiled tools. The Raster Tools under SA, which are required by
-FEST-C, are not statically pre-compiled with the package. Depending on the
-system configuration, users may need to recompile the SA Raster tools if there
-is a library call error when running the tools using FEST-C. Assuming the
-downloaded FEST-C system is installed under the ${FESTC_HOME} directory
-and the Spatial Allocator is installed under the ${SA_HOME} directory,
-users should perform the following steps:
-
-
1.
-Modify ${FESTC_HOME}/festc/config.properties to set:
-
-
·
-work.dir – working directory for scenarios.
-
-
·
-epic.home – epic home directory, which should be ${FESTC_HOME}/epic;
-includes common data and executables for both EPIC and utilities.
-
-
·
-sa.home – installed Spatial Allocator directory, which should be ${SA_HOME}.
-
-
·
-visual.program.home – directory containing VERDI program.
-
-
·
-queue.cmd – queue job submission command such as qsub or bsub.
-Queue configuration (includes queue.name and queue.bigmem as well) for job
-submission has to be modified based on the user’s Linux system. Comment out
-(place # sign in the front) the three queue configurations if user’s systems do
-not have batch job queuing systems.
-
-
·
-queue.name – queue name.
-
-
·
-queue.bigmem – big memory setup to be used by the EPIC-to-CMAQ
-tool.
-
-
·
-debug – set to “true” to print out debug message. It is
-recommended that users not change this setting.
-
-
·
-allow.diff.check – set to “true” for checking consistent input in
-"Minimum Crop Acres" and "Fertilizer Year" fields
-from different subinterfaces. It is recommended that users not change this
-setting.
-
-
2.
-Make a directory called “festc” under the user’s home directory,
-which is assumed to be ${USER_HOME}, then copy ${FESTC_HOME}/config.properties
-to the ${USER_HOME}/festc directory. Change the work.dir setting if
-needed.
-
-
3.
-Modify ${FESTC_HOME}/festc/festc.sh file to set:
-
-
·
-FESTC_HOME to ${FESTC_HOME}/festc.
-
-
·
--Xmx1024M to -Xmx2048M (optional) if users want to use 2 GB of
-RAM to run the interface.
-
-
·
-JAVA path (optional) if users do not want to use the Standard
-Edition Runtime Environment (JRE) version 8 for Linux 32-bit and 64-bit systems
-that is included in the FEST-C release.
-
-
4.
-Modify ${FESTC_HOME}/festc/festc_setup.csh to:
-
-
·
-Set the ${FESTC_HOME} and ${SA_HOME} directories.
-
-
·
-Source the file in the user’s .cshrc file.
-
-
5.
-Launch FEST-C 1.4 interface by typing:
-
-
·
-Type festc in any directory with the x-window capability.
-
-
Troubleshooting
-for the SA Raster Tools:
-
-
The SA Raster
-Tools have compiled tools which are stored under ${SA_HOME}/bin/64bits.
-The executable tools may not work depending on the system configuration. If
-there is a library error in running the SA Raster Tools within FEST-C, users
-should:
-
-
·
-Recompile all libraries under ${SA_HOME}/src/libs
-following instructions in the ${SA_HOME}/src/libs/README file.
-
-
·
-Modiy ${SA_HOME}/src/raster/Makefile for correct paths.
-
-
·
-Type “make clean” to clean previous compiled programs.
-
-
·
-Type “make” to compile the tools.
-
-
·
-Type “make -B install” or “make install” to install compiled
-tools.
The FEST-C
-interface facilitates the creation of the spatial associations, input files,
-soil initialization, and application processes required by EPIC. After
-preliminary site information and soils are assigned to each grid cell, a
-25-year “spin-up” simulation is required to generate initial soil and annual
-nitrogen demand conditions that represent the management system the user has
-defined. These initial conditions are provided to the year-specific
-application and management scheme.To launch the FEST-C interface
-system, type:
-
-
·
-festc or ${FESTC_HOME}/festc/festc.sh
-
-
-
-
The FEST-C interface allows the
-user to create, select, and manage different scenario management schemes under
-the File menu for EPIC modeling and sub-interface tools (see Figure 2).
-
-
-
-
Figure 2. The
-FEST-C interface system.
-
-
The system is described in detail
-in the remaining sections of this document:
-
-
-
Section 2: File Structures
- for EPIC Modeling
-
Section 3:
- Scenario Management Selections under the File Menu
-
Section 4: The Pre-EPIC File Generation Tools
-
-
-
1.
-BELD4 Data Generation
-
-
2.
-Crop Site Info Generation
-
-
3.
-WRF/CMAQ to EPIC
-
-
-
Section 5: EPIC
- Spin-up Run Tools:
-
-
-
1.EPIC
-Site File Generation
-
-
2.Soil
-Match for EPIC Spin-up
-
-
3.
-Management File Generation for Spin-up
-
-
4.
-View/Edit EPIC Inputs
-
-
5.
-EPIC Runs for Spin-up
-
-
-
Section 6: EPIC
- Application Run Tools
-
-
-
1.
-Management File Generation for Application
-
-
2.
-EPIC Runs for Application
-
-
-
Section 7:
- Output Processing and Visualizing Tools:
The EPIC model
-and related utilities and data are stored under the ${FESTC_HOME}/epic directory.
-The working directory, which is named “scenarios”, is defined by work.dir
-in the user’s config.properties file. In the released tar, “scenarios”
-with a sample “test_case” scenario is provided for users to test the
-system under the epic directory. After the installation, users can move
-the “scenarios” directory to their working space and modify the work.dir
-entry for the new location. The file structure for EPIC modeling within the
-FEST-C system is displayed in Figure 3.
-
-
-
-
Figure 3. File
-structure for EPIC modeling (directory names in black and files in blue)
-
-
The epic
-directory contains four subdirectories: model, util, common_data, and doc;
-scenarios is under work.dir, which is specified in config file under home
-directory. These are described below.
-
-
·
-model – used to store the EPIC0509 model for FESTCv1.4. It
-includes one subdirectory:
-
-
-
-current: contains two EPIC models for spin-up and
-application simulations modified from EPIC0509 for CMAQ modeling. The EPIC0509
-with many updates were obtained from the Texas A&M AgriLife Research.
-
-
·
-doc – contains the documentation on the development of the
-EPIC modeling system for CMAQ (EPA_EPIC_application_v1_10252013.pdf).
-
-
·
-util – contains utility programs developed by Benson
-Consulting to generate site, soil, and management input files required by EPIC.
-It has four subdirectories:
-
-
-
-siteCreate: contains two programs used by the EPIC Site
-File Generation tool. The programs will not only generate EPIC site files but
-also link EPIC sites (grid cell centroids) to the BELD4 crop grid assignments
-and the 8-digit hydrologic cataloging units (HUCs) that contain the grid cells
-to be used in the soil matching program. Based on BELD4, this program assigns
-only those crops to a grid cell that BELD4 indicates are present at that
-location. This minimizes the number of crop-specific simulations performed
-across large domains. Users need to input the minimum crop acres, usually 0 or
-40 acres, but can be any value, to be included in EPIC simulations. The larger
-the cropland area minimum, the fewer crops that will be identified within a
-grid for EPIC, the fewer the grid-level simulations and the faster the overall
-system execution time.
-
-
-
-soilMatch: contains six soil matching programs used by the
-Soil Match for EPIC Spinup tool. Soils are selected based on the U.S.
-Department of Agriculture (USDA) 1997 Natural Resource Inventory (NRI)
-assignment of each crop in each 8-digit HUC to its most common HUC-8 soil type.
-
-
-
-
-manageCreate: contains programs to create EPIC management
-files for spin-up and application simulations by the Management File
-Generation for Spinup and Management File Generation for Application
-tools.
-
-
-
-swat: contains R codes and associated sample c-shell
-scripts to extract daily EPIC outputs, nitrogen deposition, and daily weather
-and to transfer them to SWAT input by clicking “EPIC”, “NDEP”, “DailyWETH”, and
-“SWAT INPUTS” sequentially. “SWAT INPUTS” is the last button users should click
-for aggregating all input data generated from the first three buttons into SWAT
-input format. The tool associated with “SWAT INPUTS” button requires a text
-file including delivery ratios for EPIC to SWAT integration. The sample text
-file is provided in the “share_data” directory under the test_case
-scenario as “subbasins-mapping_test_case.csv”. Users need to create this file
-for their corresponding watershed SWAT simulations.
-
-
-
-misc: contains utility programs for converting the
-generated BELD4 land use file in NetCDF format to be in IO/API format for the
-CMAQ bi-directional modeling (used by the BELD4 tool script), aggregating EPIC
-variables from yearly average extraction output by regions (e.g. 8-digit
-hydrologic units, states, counties, and the whole domain) and by crops (e.g. 42
-crops), summarizing N fertilizer application from extracted daily files for
-CMAQ, and generating files with selected EPIC daily output variables for the
-8-digit HUC areas. Users can access the README file in the directory and modify
-the C shell scripts in the subdirectories to use the tools. Users must have the
-required R libraries installed to run the R tool utilities.
-
-
·
-common_data – contains data sets needed for EPIC and
-utility programs. Also provided under this subdirectory is the file EPIC_42crop_names.txt,
-which contains the crop names and numbers, used in the FEST-C system. This
-directory has the following subdirectories:
-
-
-
-BaumerSoils: contains the soil data sets (22,838 soils) built
-with soil parameters from the Baumer database developed by Dr. Otto Baumer of National
-Soil Survey Laboratory (NSSL) at USDA. Dr. Baumer used the SOILS5 database and
-soil pedon data to develop the representative EPIC data sets. Benson
-Consulting utilized this information to create a subset of soil parameters in
-22,838 soil files to be used with EPIC. Detailed information on the data set
-creation can be obtained from the documentation of the EPIC modeling system for
-CMAQ. The raw soil profiles have been QA’d and missing descriptors have been
-filled so that they may be similar, but are not identical to the profiles available
-through the USGS STATSGO and SURRGO databases.
-
-
-
-EPIC_model: contains two 5-year average CMAQ N deposition
-daily and NetCDF files and the following two directories, which have common
-data files required by EPIC spin-up and application runs. The two 5-year
-average N deposition daily files under dailyNDep_2004 and dailyNDep_2008
-directories provide 5-year average CMAQ-simulated N deposition estimates for
-each calendar day over the periods 2002-2006 (referred to as “2002-2006 5-year
-CMAQ average” and 2006-2010 (referred to as “2006-2010 5-year CMAQ average”. These
-periods are provided to reflect the documented non-stationarity of N deposition
-trends. The average N deposition data are from the U.S. CMAQ domain which has
-the following properties:
The
-N deposition data from the nearest grid point in the average daily sets is selected
-in EPIC simulations.
-
-
·
-spinup – has common files used for EPIC spin-up
-simulations. For all crops except potatoes, the spin-up is set to run for 25
-years using the EPIC statistical weather generator (see the weather generator discussion
-in the EPIC documentation from the Texas A&M AgriLife Research). We have
-arbitrarily set the starting year as 1978 in EPICCONT.DAT. The termination
-date is not used by any subsequent codes and, since the driving data are
-statistically generated, do not exactly correspond to any observation year. For
-potatoes, the spin-up is set to run for 100 years from 1903 in EPICCONT_POTATOES.DAT.
-
-
-
·
-app – contains common files used for EPIC application
-simulations. In the FEST-C system, users input the target year (1 year only)
-for the EPIC application simulation. When a new scenario is created,
-EPICCONT.DAT from this directory is copied to the scenarios/“scenario
-name”/share_data directory and the simulation period is changed to 2 years
-starting from the year previous to the simulation year. Two years’ worth of
-weather data are needed to support production of fall-sown crops. At present,
-the same weather is used for both years. In the future, an option may be added
-to support input of two unique weather time series.
-
-
-
-gisFiles: includes U.S. counties, U.S. states plus some
-boundary areas in Canada and Mexico, U.S. 8-digit HUC shapefiles, and elevation
-and slope raster files. The readme file in the directory describes each file
-and associated attributes in detail.
-
-
-
-statWeath: contains weather station climate statistics
-files distributed with the standard EPIC package.
-
-
-
-util: includes common files used by the utility programs.
-This directory has two subdirectories:
-
-
·
-soilMatch – has input files used by the soil matching
-program to create EPIC soil files for the EPIC Runs for Spinup tool.
-
-
·
-manageCreate – contain files to be used in generating EPIC
-spin-up and application management files. We developed management data with
-fertilizer types applied in 2001 and 2006 for each of 10 production regions
-(Northeast, Appalachia, Southeast, Lake States, Corn Belt, Delta States,
-Northern Plains, Southern Plains, Mountain, and Pacific) (see the region map in
-Cooter et al. [2012], which is listed in the “Online Resources” section of the
-FEST-C web site (http://www.cmascenter.org/fest-c/).
-Fertilizer types (but not amounts) applied are based on fertilizer sales of 62
-major fertilizer types by state. Users can obtain detailed information from
-the documentation for the EPIC modeling system for CMAQ. It is recommended
-that 2001 be used for applications prior to 2006, and that 2006 be used for
-applications from 2006 through 2010. We anticipate that a 2011 fertilizer type
-file will be included in the next interim release. Fertilizer types applied
-are used by the EPIC management file generation for application, and they are
-stored under the following two subdirectories:
-
-
-
-2001: for 2001 fertilizer year management file
-generation.
-
-
-
-2006: for 2006 fertilizer year management file
-generation.
-
-
In
-both cases, regional fertilizer data information is stored under the directory:
-
-
-
-regionFert
-
-
·
-scenarios – contains EPIC application scenarios and it is
-the working directory for a user. The directory is described separately below
-this bulleted list.
-
-
-
-
In general, users should not change
-the data files described in the above directories. All files generated by
-users’ applications are stored under the scenarios directory. When the
-user creates a scenario by selecting “New Scenario” under the File menu,
-the following items are created:
-
-
·
-scenariosInfo – a metadata file that stores information for
-the created scenario, which is assumed to be named by the user as “scenario
-name”. This directory contains:
-
-
-
-“scenario name”: an XML file that stores the scenario information.
-
-
-
-
-logs: directory containing the script file used to create (or
-copy or delete as well) the scenario and execution log file.
-
-
·
-“scenario name” – scenario directory that will contain all
-generated files for this scenario.
-
-
Under each scenario directory, the
-following directories are created for EPIC modeling:
-
-
·
-share_data – contains all data sets generated for EPIC
-modeling and to be used by all crops modeled. The following two data subdirectories
-which store generated EPIC site files and daily weather files are included
-under this directory:
-
-
-
-SIT: contains EPIC site files.
-
-
-
-dailyWETH: contains daily weather and N files for EPIC
-modeling.
-
-
·
-scripts – stores script and log files created to run the
-tools within the FEST-C interface. All tools are executed through the Linux
-queue system. Users should always check the log file to make sure that the
-queue job completed correctly. Unwanted files under this directory should be
-cleaned out periodically.
-
-
·
-work_dir – contains some intermediate or temporary files
-created by the FEST-C tools. Not many files are created under this directory.
-
-
-
·
-21 crop dirs ( "HAY", "ALFALFA",
-"OTHER_GRASS", "BARLEY", "EBEANS",
-"CORNG", "CORNS", "COTTON", "OATS",
-"PEANUTS", "POTATOES", "RICE", "RYE",
-"SORGHUMG", "SORGHUMS", "SOYBEANS",
-"SWHEAT", "WWHEAT", "OTHER_CROP",
-"CANOLA", "BEANS") – the 21 crop directories are
-created by the EPIC Site File Generation tool. Under each crop
-directory there are many files that are created for generating EPIC input
-files. The spinup and app subdirectories described below are
-also created from management file generation and EPIC runs for spin-up and
-application:
-
-
-
-spinup: contains files created from the EPIC management
-file generation and EPIC runs for spin-up tools. It contains the following
-three subdirectories:
-
-
·
-manage – contains EPIC run files, EPIC site management
-files created by the Management File Generation for Spinup tool, and
-tile drain soil list file. The management files and tile drain soil list file are
-contained under the following subdirectories:
-
-
-
-OPC: contains the management schedule for each domain grid
-cell containing rain-fed and irrigated crop. Variables (schedule) can be
-interpreted using the documentation for the EPIC modeling system for CMAQ.
-
-
-
-tileDrain: contains the SOILLIST.DAT which has soil tile
-drain information for EPIC spinup runs. In general, if a soil is classified as
-hydric, then it is assumed to drain.
-
-
·
-rainf – contains files for each domain grid cell that are created
-by the EPIC Runs for Spinup tool from rain-fed crops. It contains the
-following output directories (see the EPIC documentation from the Texas A&M
-AgriLife Research):
-
-
-
-DFA: daily fertilizer and other output.
-
-
-
-NCM: monthly fertilizer and other output.
-
-
-
-NCS: monthly soil output.
-
-
-
-OUT: standard EPIC output file that contains various
-budget tables and summaries of the simulation which are useful for debugging.
-
-
-
-SOL: soil output files that are used as initial values for
-the application.
-
-
-
-TNA: annual fertilizer and other outputs.
-
-
-
-TNS: annual soil output.
-
-
·
-irr – contains files for each domain grid cell containing the
-particular crop that were created by the EPIC Runs for Spinup tool from
-irrigated crops. It contains the following output directories:
-
-
-
-DFA: daily fertilizer and other output.
-
-
-
-NCM: monthly fertilizer and other output.
-
-
-
-NCS: monthly soil output.
-
-
-
-OUT: standard EPIC output file that contains various
-budget tables and summaries of the simulation that are useful for debugging.
-
-
-
-SOL: soil output files.
-
-
-
-TNA: annual fertilizer and other outputs that are useful
-for debugging.
-
-
-
-TNS: annual soil output.
-
-
-
-app: contains files created from the management file
-generation and EPIC runs for application tools. It contains the following
-three subdirectories:
-
-
·
-manage – contains EPIC run files, EPIC site management
-files created by the Management File Generation for Application tool,
-and tile drain soil list file. Management files and the tile drain soil list
-file are contained under the following subdirectories:
-
-
-
-OPC: contains the management schedule for each domain grid
-cell containing rain-fed and irrigated crop. Variables (schedule) can be
-interpreted using the documentation for the EPIC modeling system for CMAQ.
-
-
-
-tileDrain: contains the SOILLIST.DAT which has soil tile
-drain information for EPIC application runs.
-
-
·
-rainf – contains files created by the EPIC Runs for
-Application tool from rain-fed crops. It contains the following output
-directories (see the EPIC documentation from the Texas A&M AgriLife
-Research):
-
-
-
-DFA: daily fertilizer and other output.
-
-
-
-NCM: monthly fertilizer and other output.
-
-
-
-NCS: monthly soil output.
-
-
-
-OUT: standard EPIC output file that contains various
-budget tables and summaries of the simulation (useful for debugging).
-
-
-
-SOL: soil output files.
-
-
-
-TNA: annual fertilizer and other outputs.
-
-
-
-TNS: annual soil output.
-
-
·
-irr – contains files created by the EPIC Runs for
-Application tool from rain-fed crops. It contains the following output
-directories:
-
-
-
-DFA: daily fertilizer and other output.
-
-
-
-NCM: monthly fertilizer and other output.
-
-
-
-NCS: monthly soil output.
-
-
-
-OUT: standard EPIC output file that contains various
-budget tables and summaries of the simulation (useful for debugging).
-
-
-
-SOL: soil output files.
-
-
-
-TNA: annual fertilizer and other output.
-
-
-
-TNS: annual soil output.
-
-
·
-output4CMAQ – stores EPIC output files and extracted NetCDF
-files for quality assurance (QA) and CMAQ bidirectional NH3
-modeling. This directory contains the two following subdirectories:
-
-
-
-spinup: contains all files created from EPIC spin-up
-simulations for CMAQ. It contains the following three subdirectories:
-
-
·
-5years – contains extracted average EPIC output for each
-crop from the last five years of the spin-up simulation. Files are named as
-“BELD4 Crop Number”.dat (see Table 1 in Section 4.1 for crop numbers).
-
-
·
-daily – stores daily EPIC output files for the EPIC spin-up
-simulation of each crop. “BELD4 Crop Number”.NCS is for soil output and “BELD4
-Crop Number”.NCD is for fertilizer and other daily output.
-
-
·
-toCMAQ – contains created NetCDF and IO/API files with
-EPIC spin-up output for selected modeling grid cells with crop data. The NetCDF
-output files are created using the FEST-C tools by extracting data files stored
-under the 5years or daily directories listed above.
-
-
-
-app: stores files created from EPIC application simulations
-for CMAQ. It contains the following three subdirectories:
-
-
·
-year – contains extracted average EPIC output for the EPIC
-application year. Files are named as “BELD4 Crop Number”.dat.
-
-
·
-daily – stores daily EPIC output files for the EPIC application
-simulation of each crop. “BELD4 Crop Number”.NCS is for soil output and “BELD4
-Crop Number”.NCD is for fertilizer and other daily output.
-
-
·
-toCMAQ – contains created NetCDF and CMAQ-ready IO/API
-files with the BELD4 data and EPIC application simulation results for the
-modeling domain. The NetCDF output files are created using the FEST-C tools by
-extracting data files stored under the year or daily directories
-listed above.
-
-
·
-output4SWAT – stores daily EPIC, N deposition, and
-meteorology files summarized by regions and SWAT-ready input files for SWAT
-simulation. This directory contains four subdirectories:
-
-
-
-dailyEPIC – contains runoff data extracted from EPIC daily
-output files. The extracted data are summarized by the domain, county, state, HUC2,
-HUC6, and HUC8.
-
-swat_inputs – contains SWAT-ready EPIC, weather, and N
-deposition input files in subdirectories named as dailydep, dailyweath,
-and EPICinputPoint.
There are five scenario management
-selections (as well as Exit) under the File menu at the upper left of the
-FEST-C tool bar: Open Scenario, New Scenario, Copy Scenario,
-Save Scenario, and Delete Scenario. Each of these is described
-below.
-
-
·
-Open Scenario – to open an already-created scenario. Users
-always need to either open or create (see next bullet) a scenario to work on.
-Users can select any one of the scenarios under the scenarios/scenariosInfo
-directory. After users open a scenario, information for the scenario, such as
-the domain description, will be automatically filled in by the FEST-C tool
-interface. Within the FEST-C system, users have to work within a scenario to
-execute any of the tools except the Visualization tool. Figure 4 shows
-the interface used to open the test case created in the FEST-C system (The test_case
-scenario is described at the beginning of Section 4).
-
-
-
-
Figure 4. Open Scenario selection
-window used to open the test_case scenario.
-
-
-
-
·
-New Scenario – to create a new scenario (versus opening
-one that’s already been created). In creating a new scenario, the user has to
-provide the following information for a CMAQ modeling domain and EPIC
-simulation year (see Figure 5):
-
-
-
-Rows, Columns: the number of rows and columns for the
-domain.
-
-
-
-XCellSize, YCellSize: x and y resolution for
-the grid cell.
-
-
-
-XMin, YMin: x and y coordinates of the lower
-left corner of the lower left grid cell. Users can often find this information
-in the GRIDDESC file in the Meteorology-Chemistry Interface Processor (MCIP)
-output.
-
-
-
-
Figure
-5. New Scenario selection window with input to create the test_case
-scenario within FEST-C.
-
-
-
-
-
-Proj4Projection: domain projection defined in Proj4 format
-(see details at http://geotiff.maptools.org/proj_list/).
-The interface sets the Lambert Conformal Conic projection, which is used by the
-CMAQ U.S. 12-km domain as the default. Users can change it to any projection
-supported for CMAQ modeling.
-
-
-
-Grid Name: user-supplied name for the domain, using no
-more than 16 alphanumeric characters and no spaces.
-
-
-
-Simulation Year: year (YYYY) for the EPIC simulation.
-FEST-C is designed to simulate yearly fertilizer application information for
-CMAQ bidirectional NH3 modeling.
-
-
-
-NLCD/MODIS Data Year: year (YYYY) for the NLCD/MODIS land
-cover data used for the EPIC simulation. NLCD/MODIS land cover data are required
-in the EPIC simulation within FEST-C for CMAQ bidirectional NH3
-modeling. Currently, users can select 2001, 2006, or 2011 NLCD/MODIS data
-year. 2016 NLCD/MODIS data selection will be added to the system in the
-future.
-
-
-
-Scenario Name: name for the scenario, using alphanumeric
-characters and no spaces.
-
-
When a new scenario is
-created, the following files and directories are created:
-
-
-
-scenarios/scenariosInfo/“scenario name”: XML file to store the scenario information.
-
-
-
-scenarios/“scenario name”: directory
-to store all generated information for this scenario. Some subdirectories are
-also generated under this scenario directory (see Section 2 for file
-structures).
-
-
-
-scenarios/“scenario name”/share_data/EPICCONT.DAT: contains
-EPIC constant parameters. The simulation period is a two-year period starting with
-the year before the simulation year.
-
-
·
-Copy Scenario – to copy an existing scenario under the scenarios/scenariosInfo
-directory to a new scenario with a defined simulation year, which can be the same
-as or different from the existing scenario year (see Figure 6). Note that if
-the existing scenario contains many crop simulations, this action can take a
-long time to complete in a background queue job.
-
-
-
-
-
-
Figure 6. Copy Scenario selection window.
-
-
-
-
·
-Save Scenario – to save a scenario after a user has worked
-on it. Only the input information for the scenario tool interfaces is saved.
-When the user performs the FEST-C tool actions, generated files are always
-saved under different directories, described in Section 2.
-
-
·
-Delete Scenario – to
-delete a scenario. This is also run as a background submission and can
-take some time. All directories and subdirectories for that scenario are
-deleted completely.
-
-
·
-Exit – to exit the FEST-C interface. You will be asked if
-you want to save the scenario you were working on before exiting the tool.
-
-
The action performed by making a selection
-under the File menu (e.g., copy, create, delete) is executed by a script file
-through the queue job. The script and log files are stored under the scenarios/scenariosInfo/logs
-directory.Users should check the log files under the directory to
-make sure that the selected action completely correctly.
Before describing the various
-FEST-C tools in Sections 4 through 7, we must first discuss the test_case
-scenario in the FEST-C system, because we use this scenario to demonstrate the
-input and output components on the tool interface. The test_case
-scenario is a small 12-km domain with 25 rows and 25 columns in the CMAQ
-standard projection. The domain is located in the northwest corner of Iowa and
-crosses into Minnesota, South Dakota, and Nebraska. Figure 7 illustrates the
-domain grid cells with the identification numbers (GRIDID) used in the FEST-C
-system; colors are used to indicate the crop percentage for each grid cell as generated
-from 2006 NLCD data. All 625 (25´25)
-12-km grid cells in this test domain have crop coverage, and most of them have
-more than 75% crop coverage. The GRIDID for a grid cell with row and column
-starting from 1 is defined as:
-
-
-(1)
-
-
where columns is the number
-of columns for the domain. Row and column start from 1 at the lower left
-corner cell in the domain. Users can compute the row and column for a grid
-cell with GRIDID as:
-
-
- (2)
-
-
-
(3)
-
-
where floor is for rounding
-down the value and remainder is for taking the remainder from the
-division.
-
-
-
-
Figure 7.
-FEST-C test_case scenario 12-km domain in the U.S. northern Central Plains.
-Associated with each grid cell is an identification number (GRIDID) and a color
-that indicates crop coverage percentage. The domain’s cells are numbered from
-1 for the lower left corner cell to 625 for the upper right corner cell.
-
-
-
-
In Section 4,
-we discuss the first three tools in the FEST-C interface: the BELD4 Data
-Generation tool, the Crop Site Info Generation tool, and the WRF/CMAQ-to-EPIC
-tool. These are used to prepare site crop and spatial data for EPIC input file
-generation and to generate required daily weather data and optional nitrogen
-deposition data for the EPIC simulation year. All three tools were developed
-in the SA Raster Tools system.
EPIC modeling for a CMAQ domain requires BELD4 data, which are used for
-selecting grid cells with crop coverage. The BELD4 Data Generation tool
-allows users to compute the BELD4 dataset for a selected scenario. For detailed
-information, users can consult the SA Raster Tools documentation: https://www.cmascenter.org/sa-tools/.
-Figure 8 shows the interface used to compute the BELD4 dataset for the test_case
-scenario.
-
-
-
-
Figure 8. The BELD4 Data Generation tool
-interface for the test_case scenario.
-
-
Before running this tool, users
-need only to make sure that the following two entries are correct for their
-scenarios:
-
-
·
-NLCD/MODIS Data Year – the year defined when creating the
-scenario; it can be either 2001, 2006, or 2011. Processed 2001, 2006, and 2011
-crop tables from the U.S. and Canada are stored under the ${SA_HOME}/data
-directory for this tool. The 42 rain-fed and irrigated crops generated from
-the BELD4 tool and modeled in the FEST-C system are displayed in Table 1. In
-addition to crop numbers used in BELD4 (new version of BELD), the table also
-lists BELD3 (older version) numbers, because we started building the FEST-C
-system using the BELD3 data. Crop numbers used in EPIC modeling often follow
-the BELD3 crop numbers (from 22 to 63), but the output files from EPIC modeling
-for use in CMAQ use the BELD4 crop numbers (from 1 to 42). If a new crop is to
-be modeled in the FEST-C system, new crop tables under the SA data
-directory must be generated and the BELD4 tool has to be modified as well.
-Table 2 provides additional information on how crops are mapped to each EPIC crop
-type.
-
-
Table 1. The 42 rain-fed and
-irrigated crops modeled in the FEST-C system.
-
-
-
-
-
-
-
BELD4
-
-
-
BELD3
-
-
-
Crop Name
-
-
-
BELD4
-
-
-
BELD3
-
-
-
Crop Name
-
-
-
BELD4
-
-
-
BELD3
-
-
-
Crop Name
-
-
-
-
-
1
-
-
-
22
-
-
-
Hay
-
-
-
15
-
-
-
36
-
-
-
Cotton
-
-
-
29
-
-
-
50
-
-
-
SorghumSilage
-
-
-
-
-
2
-
-
-
23
-
-
-
Hay_ir
-
-
-
16
-
-
-
37
-
-
-
Cotton_ir
-
-
-
30
-
-
-
51
-
-
-
SorghumSilage_ir
-
-
-
-
-
3
-
-
-
24
-
-
-
Alfalfa
-
-
-
17
-
-
-
38
-
-
-
Oats
-
-
-
31
-
-
-
52
-
-
-
Soybeans
-
-
-
-
-
4
-
-
-
25
-
-
-
Alfalfa_ir
-
-
-
18
-
-
-
39
-
-
-
Oats_ir
-
-
-
32
-
-
-
53
-
-
-
Soybeans_ir
-
-
-
-
-
5
-
-
-
26
-
-
-
Other_Grass
-
-
-
19
-
-
-
40
-
-
-
Peanuts
-
-
-
33
-
-
-
54
-
-
-
Wheat_Spring
-
-
-
-
-
6
-
-
-
27
-
-
-
Other_Grass_ir
-
-
-
20
-
-
-
41
-
-
-
Peanuts_ir
-
-
-
34
-
-
-
55
-
-
-
Wheat_Spring_ir
-
-
-
-
-
7
-
-
-
28
-
-
-
Barley
-
-
-
21
-
-
-
42
-
-
-
Potatoes
-
-
-
35
-
-
-
56
-
-
-
Wheat_Winter
-
-
-
-
-
8
-
-
-
29
-
-
-
Barley_ir
-
-
-
22
-
-
-
43
-
-
-
Potatoes_ir
-
-
-
36
-
-
-
57
-
-
-
Wheat_Winter_ir
-
-
-
-
-
9
-
-
-
30
-
-
-
BeansEdible
-
-
-
23
-
-
-
44
-
-
-
Rice
-
-
-
37
-
-
-
58
-
-
-
Other_Crop
-
-
-
-
-
10
-
-
-
31
-
-
-
BeansEdible_ir
-
-
-
24
-
-
-
45
-
-
-
Rice_ir
-
-
-
38
-
-
-
59
-
-
-
Other_Crop_ir
-
-
-
-
-
11
-
-
-
32
-
-
-
CornGrain
-
-
-
25
-
-
-
46
-
-
-
Rye
-
-
-
39
-
-
-
60
-
-
-
Canola
-
-
-
-
-
12
-
-
-
33
-
-
-
CornGrain_ir
-
-
-
26
-
-
-
47
-
-
-
Rye_ir
-
-
-
40
-
-
-
61
-
-
-
Canola_ir
-
-
-
-
-
13
-
-
-
34
-
-
-
CornSilage
-
-
-
27
-
-
-
48
-
-
-
SorghumGrain
-
-
-
41
-
-
-
62
-
-
-
Beans
-
-
-
-
-
14
-
-
-
35
-
-
-
CornSilage_ir
-
-
-
28
-
-
-
49
-
-
-
SorghumGrain_ir
-
-
-
42
-
-
-
63
-
-
-
Beans_ir
-
-
-
-
-
-
-
Table 2. Mapping of the 42 rain-fed and
-irrigated crops for U.S. and Canada (Mexico will be available in a future
-release).
=Irrland – sum of irr crops
- (if irrland is larger)
-
-
-
N/A
-
-
-
-
-
39
-
-
-
Canola
-
-
-
CANOLA
-
-
-
Canola (rapeseed)
-
-
-
-
-
40
-
-
-
Canola_ir
-
-
-
CANOLA, IRRIGATED
-
-
-
N/A
-
-
-
-
-
41
-
-
-
Beans
-
-
-
PEAS, DRY EDIBLE
-
-
-
Dry field peas; Lentils;
- Chick peas
-
-
-
-
-
42
-
-
-
Beans_ir
-
-
-
PEAS, DRY EDIBLE, IRRIGATED
-
-
-
N/A
-
-
-
-
-
-
-
-
-
·
-NLCD/MODIS List File – set to the fixed-format text file that
-contains downloaded NLCD land use, imperviousness, and canopy data files and
-downloaded tiled MODIS land cover (MCD12Q1) data sets. The interface sets the
-file ${SA_HOME}/data/ nlcd_modis_files_{NLCD/MODIS Data Year}.txt as the default
-file. Users need to download NLCD and MODIS land cover data sets and modify
-the text file accordingly using the paths and names for the downloaded data
-sets. The text file must have the same fixed titles and format as in the
-default file. ${SA_HOME}/data/sat/README contains instructions on downloading
-the data sets. If users want to generate a 2001 BELD4 data set, 2001 NLCD and
-MODIS land cover data sets have to be downloaded from the NLCD web site (https://www.mrlc.gov/finddata.php)
-and MODIS land products web site (https://lpdaac.usgs.gov/products/modis_products_
-table/mcd12q1 ), and the nlcd_modis_files_2001.txt list file has to
-be modified following the format in this sample file.
-
-
-
-
When the Run button on the BELD4
-Data Generation tool interface is clicked, a c-shell (csh) script file is
-generated under the scenarios/”scenario name”/scripts directory.This
-file is submitted to the system as a queue job after the user clicks OK, and a
-log file for the job execution will be generated after the queue job is finished.
-Users should always check for error messages in the log file, based on the
-information provided in the Message Box (shown in Figure 8).
-
-
-
-
The outputs produced by the tool
-are the following files, which are stored under the ”scenario
-name”/share_data and ”scenario name”/output4CMAQ/app/ toCMAQ directories:
-
-
·
-beld4_{Gird Name}_{NLCD/MODIS Data Year}.nc (beld4_TESTGRIDS_2006.nc
-for the test_case scenario) – both NetCDF and I/O API formatted files
-containing gridded percentage data for imperviousness, canopy, 194 tree species,
-40 NLCD/MODIS land cover classes, and 42 BELD4 crops are created. The NetCDF domain-
-and resolution-specific data file is a required input to the Crop Site Info
-Generation tool discussed in the next section. CMAQ bi-directional NH3
-modeling requires the I/O API formatted BELD4 output file under the ”scenario name”/output4CMAQ/app/toCMAQdirectory.
-
-
·
-beld4_{Grid Name}_{ NLCD/MODIS Data Year}.txt
-(beld4_TESTGRIDS_2006.txt for the test_case scenario) – a text table
-containing gridded percentage data for imperviousness, canopy, and 40 NLCD/MODIS
-land cover classes for a specific domain and grid resolution.
The Crop Site Info Generation tool is used to
-compute EPIC site (grid cells) and crop information for EPIC modeling. The
-tool processes spatial boundary shapefiles and elevation and slope image data
-to generate site information data needed in EPIC modeling. Figure 9 displays
-the tool interface used to compute the crop site information for the test_case
-scenario. The tool uses the spatial data sets stored under ${FESTC_HOME}/epic/common_data/gisFiles
-and input files from the ${SA_HOME}/data directory. Before running this
-tool, users need only to choose the following two entries for this tool:
-
-
·
-BELD4 NetCDF File – this is the BELD4 NetCDF file generated
-using the BELD4 tool described above. The file name should be of the form beld4_{Gird
-Name}_{NLCD/MODIS Data Year}.nc (e.g. beld4_TESTGRIDS_2006.nc for the test_case
-scenario). If this file does not exist, the interface will indicate this after
-Run is clicked. If this is the case, users need to either run the BELD4 tool to
-generate this data set or input anywhere within the computer system a BELD4 NetCDF
-file that is based on the same domain as the domain of the scenarios with which
-the users are working.
-
-
·
-Minimum Crop Acres – this is the minimum crop area for at
-least one of the 42 possible crops in a grid cell, if the grid cell is to be
-selected for EPIC simulation. For instance, users can set it to be 40 acres for
-representing the smallest commercially viable farm size. For finer grid
-resolutions or for domains in which smaller commercial enterprises make up a
-significant fraction of farms (e.g., orchards, some vegetable and specialty
-crops), users may need to reduce this minimum to adequately characterize the
-distribution of agricultural lands. For including all cropland in simulations,
-users should set it to be 0.0. Doing so may increase the number of simulated
-grid cells (sites), which can also increase run time.
-
-
-
-
Figure 9. The Crop Site Info Generation tool
-interface used for the test_case scenario.
-
-
After Run has
-been clicked and the queue job has completed, users should check the log file
-under their scenario’s scripts directory to see whether any errors occurred
-during execution. The tool generates the following three text output files
-stored under scenarios/”scenario name”/share_data:
·
-EPICSites_Crop.csv – contains the GRIDID, acreages of 42 possible
-crops within each grid cell, COUNTRY, and HUC8 items used in EPIC site and soil
-file generation.
-
-
·
-allSites_Info.csv – contains the GRIDID, XLONG, YLAT, ELEVATION,
-SLOPE_P, HUC8, REG10, STFIPS, CNTYFIPS, GRASS, CROPS, CROP_P, COUNTRY, and
-COUNTRY-PROVINCE items for all grid cells to be used in the SWAT watershed
-extraction.
The WRF/CMAQ-to-EPIC
-tool is used to generate EPIC daily weather data and, if the option is
-selected, N deposition inputs to be used in EPIC application simulations. The
-tool reads EPIC grid cell information stored in the allSites_Info.csv file
-generated using the Crop Site Info Generation tool (the previous tool).
-It extracts daily weather input data from WRF simulation output (METCOR2D data
-arrays) into a NetCDF file and EPIC-ready text files. Users need to make sure
-that the right version of the WRF/CMAQ-to-EPIC tools are compiled under
-the Spatial Allocator. There are two versions of this tool: one for CMAQ before
-version 5.2 and one for CMAQ v5.2 or above version.
-
-
There are up to
-four options currently available for the inclusion of daily atmospheric deposition
-data in EPIC simulations: (1) no N deposition, (2) the original EPIC
-default (assumes a constant N concentration of 0.8 ppm in precipitation and no
-dry deposition), and (3) CMAQ hourly output files (DRYDEP, WETDEP1) from a
-previous CMAQ run (unidirectional or bidirectional), and (4) a pre-processed
-set of 5-yr average CMAQ deposition estimates for the period 2002-2006 (labeled
-as 2004) and 2006-2010 (labeled as 2008). In the vicinity of areas receiving
-significant atmospheric dry deposition, such as areas immediately surrounding
-large animal feeding operations, this information can impact EPIC
-biogeochemistry and subsequent estimates of plant N application needs. If
-speciated N deposition is available, oxidized wet and dry deposition are
-assumed to enter the EPIC soil nitrate pool, and reduced wet and dry deposition
-is assumed to enter the EPIC soil ammonium pool. If CMAQ hourly output files
-are selected for this tool, the MCIP and CMAQ domains must be the same as the
-domain defined in the EPIC scenario. Figure 10 shows this tool interface as used
-for the test_case scenario.
-
-
-
-
Figure 10. The WRF/CMAQ-to-EPIC tool interface
-used for the test_case scenario.
-
-
Before running this tool, users must
-provide input for the following three items in the interface:
-
-
·
-MCIP Data Directory – this directory contains processed
-WRF files output by MCIP for the EPIC simulation year. This tool requires only
-MCIP METCRO2D output files. METCRO2D output files must have names of the
-format METCRO2D*{DATE} in which * can be any non-digit characters and {DATE}
-can be in one of four date formats: YYYYMMDD, YYMMDD, YYYYDDD, or YYDDD (e.g., METCRO2D_051226)
-
-
·
-Deposition Selection – used to select one of the following
-three options:
-
-
-
-CMAQ deposition directory: select this option to use CMAQ
-deposition output files. If this is selected, users must set the CMAQ
-deposition file directory in the next field on the interface.
-
-
-
-Default: this option assumes that the N mixing ratio is 0.8 ppm
-for wet oxidized N deposition. The tool computes wet oxidized N deposition based
-only on WRF rainfall, and other N deposition variables are assumed to be zero.
-
-
-
-Zero: this option assumes that there is no atmospheric N.
-
-
·
-CMAQ Deposition Directory – used to set the directory
-containing the CMAQ dry and wet deposition output files for the simulation year
-if “CMAQ deposition directory” was chosen in the previous field. The dry and
-wet deposition file names must contain the string “DRYDEP” or “WETDEP”. In
-addition, the deposition file names must end with “*{DATE}” in the format that
-is described for the MCIP files above (e.g., an MCIP file can be named as METCRO2D_20030416
-and the deposition files can be named CCTM_M2f_v14soa_v3.4beta3_2003.DRYDEP.20030416
-and CCTM_M2f_v14soa_v3.4beta3_2003.WETDEP1.20030416).
-
-
After Run has
-been clicked and the queue job has finished, users should check the log file
-under their scenario’s scripts directory to see whether any errors
-occurred during execution. The tool generates the following three output files
-stored under scenarios/”scenario name”/share_data:
-
-
·
-dailyWETH/“GRIDID”.dly – daily weather and N
-files for each selected grid cell for EPIC modeling. “GRIDID” is the
-identification number for a selected grid cell (see Figure 7). Each daily file
-contains 14 formatted data items (listed in Table 3) to be used in the EPIC
-runs for the simulation year (same as the weather year). This daily weather
-file is duplicated for the year before the simulation year because we run the
-EPIC model for a two-year period using daily time steps.
-
-
·
-EPICW2YR.2YR – daily weather file list to be used in EPIC
-application modeling. It is defined in ${FESTC_HOME}/epic/common_data/EPIC_model/app/EPICFILE.DAT.
-
-
·
-site_weather_dep_${YEAR}0101_to_${YEAR}1231.nc – a single NetCDF
-file with daily time steps for the simulation year. It contains extracted
-daily weather and N deposition data for the all grid cells from the allSites_Info.csv
-file. Users can use the Visualization tool (discussed in Section 7) to
-display the values of a selected variable spatially.
-
-
-
-
Table 3. EPIC daily weather and nitrogen deposition
-variables.
Users must run EPIC spin-up
-simulations to generate initial soil files and annual plant N demand data,
-which are used in EPIC application-year simulations. Described in this section
-are the five EPIC spin-up run tools: EPIC Site File Generation, Soil
-Match for EPIC Spinup, Management File Generation for Spinup, View/Edit
-EPIC Inputs, and EPIC Runs for Spinup. Users can use these tools
-sequentially to generate files needed for the spin-up and launch the EPIC
-spinup run. Users can obtain detailed information on the EPIC databases from
-the documentation for the EPIC modeling system for CMAQ, and on the file
-formats and parameter descriptions from the EPIC model documentation at the Texas
-A&M AgriLife Research (http://epicapex.tamu.edu/files/
-2013/02/epic0509usermanualupdated.pdf).
The EPIC Site
-File Generation tool uses the FORTRAN programs stored under ${FESTC_HOME}/epic/util/siteCreate.
-This tool generates EPIC site files for the selected grid cells with the
-minimum crop acreage limit criterion. It also creates 21 crop directories with
-a crop site list file that is to be used in the other tools. As simulations
-are performed, irrigated and rainfed results are maintained as separate
-subdirectories under the overall crop directory. Figure 11 displays the tool
-interface for the test_case scenario with the Minimum Crop Acres set
-to 40. Users should use the same Minimum Crop Acres set in the Crop
-Site Info Generation tool.
-
-
-
-
Figure
-11. The EPIC Site File Generation interface for the test_case
-scenario.
-
-
After the queue job run has finished,
-users should check the log file under their scenario’s scripts directory
-to see whether any errors occurred during execution. The tool generates the
-following files and directories:
-
-
·
-“scenario name”/share_data/SIT/“GRIDID”0.SIT – EPIC site
-files to be used for all EPIC crop modeling. A description of the file format
-can be obtained from the EPIC model documentation.
-
-
·
-“scenario name”/share_data/SITELIST.DAT – EPIC site list
-file for all crops to be used in EPIC modeling.
-
-
·
-“scenario name”/“crop name”/“crop name”-LIST.DAT – EPIC
-site list for the particular crop, to be used in the Soil Match for EPIC
-Spinup tool discussed in the following section. If there are no grid cells
-that contain that crop, this file will be empty.
The Soil Match
-for EPIC Spinup tool selects a soil for each crop within a grid cell and
-creates the EPIC soil input file. The EPIC soil datasets are built to
-represent the sample point soils selected for USDA NRI data points at the HUC-8
-spatial scale. This tool links built EPIC soil datasets contained in the BaumerSoils
-subdirectory to the soil series from the USDA NRI for the crop and grid cell. It
-uses the FORTRAN programs stored under ${FESTC_HOME}/epic/util /soilMatch
-with the common data files stored under ${FESTC_HOME}/epic/common_data/ util/soilMatch
-and the generated soil list data under each crop directory. Figure 12 shows
-the tool interface used to match soils for all crops (as explained at the
-beginning of Section 5) for the current version of FEST-C. After selecting the
-crops, users click the Run button to run the tool in the queue. After the job
-has finished, users should check the queue job and log file in the “scenario
-name”/scripts directory, based on the information provided in the Message
-Box (shown in Figure 12).
-
-
-
-
The tool generates many output
-files under each crop directory, but most of them are intermediate files. The
-final data file created for the EPIC spin-up simulation is “scenario name”/
-“crop name”/SOILLIST.DAT, which contains the matched BaumerSoils
-soil file with other parameters for each grid cell under each crop directory.
-This step can take substantial time to complete.
-
-
-
-
Figure
-12. The Soil Match for EPIC Spinup tool interface used for the test_case
-scenario.
-Users can select single or multiple crops for the current FEST-C version.
The Management
-File Generation for Spinup tool interface is used to create the EPIC management
-for each crop within a grid cell. The EPICRUN file that has the linkages for
-the grid cell, statistical weather and wind files, soil files, and management
-files is also created for the rain-fed and irrigated forms of the crop. This
-tool uses the FORTRAN programs ManGenSU.exe and soildrain.exe stored under ${FESTC_HOME}/epic/util/manageCreate
-with the common data files stored under ${FESTC_HOME}/epic/common_data/util/manageCreate
-and many other data files generated under each crop directory. Figure 13 shows
-the tool interface used to generate management files for the test_case
-scenario.
-
-
-
-
Figure
-13. The Management File Generation for Spinup tool used for the test_case
-scenario.
-
-
Users need to make sure that the
-following two fields are selected correctly:
-
-
·
-Fertilizer Year – select either 2001 or 2006 for choosing the
-correct common data sets stored under ${FESTC_HOME}/epic/common_data/util/manageCreate.
- 2011 fertilizer year will be available in future releases. NLCD/MODIS
-2011 is available in this release and can be used (e.g. changes in crop
-fraction) with the 2006 fertilizer year but changes to fertilizer types for
-2011 will not be realized in these simulations.
-
-
·
-Selected Crops – select one crop or multiple crops.
-
-
After the user clicks the Run
-button and then “OK”, a queue job to generate management files for each
-selected crop is submitted. After the job has finished, users should check the
-queue job and log file in the “scenario name”/scripts directory, based
-on the information provided in the Message Box (shown in Figure 13).
-
-
-
-
There are many output files
-generated under each crop, but many of these are used just for verification.
-The tool generates the following files to be used for the EPIC spin-up
-simulations under the directory “scenario name”/“crop name”/spinup/manage for
-each crop:
-
-
·
-EPICRUNFILERAIN.DAT – EPIC run file for rain-fed spin-up
-simulation of this crop.
-
-
·
-EPICRUNFILEIRR.DAT – EPIC run file for irrigated spin-up
-simulation of this crop.
-
-
·
-GRIDS_OPC.DAT – the list of management file names to be used in
-EPIC modeling.
-
-
·
-OPC/“GRIDID”0“BELD3 Crop Number”.OPC – grid cell EPIC
-management files under the OPC directory. Table 1 in Section 4.1 lists
-the crop numbers in the BELD data and how they are mapped, Table 2.
-
-
·
-tileDrain/SOILLIST.DAT – soil list file which contains
-tile drain information for EPIC simulations and is used when “tileDrain” is
-selected when running EPIC spinup simulations.
The View/Edit
-EPIC Inputs interface allows users to view or edit five main EPIC
-simulation files (listed in Figure 14). Users generally do not need to edit these
-files, but viewing them can be helpful for debugging. The user has to select a
-crop first and then select the EPIC simulation type. The simulation type can
-be SPINUP if the Management File Generation for Spinup tool (previous
-section) has been executed for the selected crop; or the user can select the
-simulation type APP after the Management File Generation for Application
-tool (discussed in Section 6.1) has been executed for the crop. Figure 14 shows
-the View/Edit EPIC Inputs tool interface for the test_case
-scenario.
-
-
-
-
Figure
-14. The View/Edit EPIC Inputs tool for the test_case
-scenario.
The EPIC Runs
-for Spinup tool interface is used to run the EPIC model for spin-up (EPICsu.exe
-program), which is stored under the directory ${FESTC_HOME}/epic/model/current.
-The tool uses input files stored primarily in the following directories:
-
-
·
-${FESTC_HOME}/epic/common_data/EPIC_model/spinup – contains
-the common model input files.
-
-
·
-scenarios/“scenario name”/share_data – contains site files
-and list file.
-
-
·
-${FESTC_HOME}/epic/common_data/statWeath – contains
-observed climate station statistical data (see http://epicapex.tamu.edu/epic/)
-
-
·
-scenarios/“scenario name”/“crop name”/spinup/manage – contains
-the run files, management files, and management list file.
Spin-up
-simulations generate EPIC soil files reflecting the user-defined management to be
-used as initial conditions in the application run for the simulation year. Soil
-erosion (wind and water) is “turned off” during the spin-up period to avoid
-loss of productive soil layers. These losses are “turned on” during
-application year simulation. As discussed in Section 2, the spin-up simulation
-is run for 25 years starting from 1978 for all crops except potatoes; for potatoes
-it is run for 100 years starting from 1903. These dates are strictly used for
-“bookkeeping” and are not used in subsequent steps. Statistically generated
-weather conditions for Cooperative Observer Weather Stations during the period
-1980-2010 drive these simulations. Future releases are expected to support
-input of alternative sources of long-term weather information (i.e., 25 years
-or more). Figure 15 displays the tool interface used for the test_case
-scenario. Users can select one or more crops for the simulation. After
-clicking the Run button, a script file is generated to run the rain-fed and
-irrigated EPIC spin-up simulations for each crop. The user submits the script
-file to the queue by clicking OK. After the job has finished, users should
-check the queue job and log file in the “scenario name”/scripts directory,
-based on the information provided in the Message Box (shown in Figure 15).
-
-
-
-
Figure 15. The EPIC
-Runs for Spinup tool used for the test_case scenario.
-
-
Users need to make sure that the
-following three fields are selected correctly:
-
-
·
-CO2 Level (ppm) - input the correct CO2
-level for the simulation (e.g. 380). The input level overwrites the CO2
-level defined in EPICCONT.DAT and site file.
-
-
·
-Daily Average N Deposition – select N input to be used in
-the simulation. Users can select using 1) the values defined in EPIC input files,
-2) daily average N input from 5-year CMAQ simulations from 2002 to 2006, or 3) daily
-average N input from 5-year CMAQ simulations from 2006 to 2010. The 5-year
-CMAQ N daily input files are stored under ${FESTC_HOME}/epic/common_data/EPIC_model.
-Future releases will include daily average N input from 5-year CMAQ simulations
-from 2011 to 2015.
-
-
·
-Run TileDrain – select whether tile drain is applied for
-saturated soils. If YES is selected, SOILLIST file under scenarios/“scenario
-name”/“crop name”/spinup/manage/tileDrain will be used. The tile drain
-process is applied for all crops except hay (1, 2), alfalfa (3, 4), Other_Grass
-(5, 6) and rice (23, 24).
-
-
The tool generates many directories
-and files for each crop. The original EPIC output files are stored under the
-two following subdirectories in the “scenario name”/“crop name”/spinup directory:
-
-
·
-rainf – contains output from EPIC rain-fed spin-up
-simulations for this crop.
-
-
·
-irr – contains output from EPIC irrigated spin-up
-simulations for this crop.
-
-
In both cases,
-soil files to be used in the EPIC application simulation are:
-
-
-
-SOL/“GRIDID”0“BELD3 Crop Number”.SOL
-
-
The output data created for CMAQ
-modeling are used primarily for QA purposes, and are stored under the following
-two directories in the “scenario name”/output4CMAQ/spinup directory:
-
-
·
-5years – contains average EPIC output data from the last
-five years of the spin-up simulations for the crops.
-
-
·
-daily – stores daily EPIC output data from EPIC spin-up
-runs for the crops simulated.
After users
-complete the EPIC simulations for spin-up, they can proceed to the EPIC
-application run tools for the simulation (or application) year. The spin-up
-simulations need to be run only once for a given domain and grid resolution—in other
-words, the initial conditions can be re-used for multiple application years.
-The first step in running an EPIC application is to generate management files
-for the application year (as described in Section 6.1). The application
-management program needs to be run only once for a given domain and grid
-resolution; it is not year-specific. The user can then run the EPIC model for
-the application year (as described in Section 6.2) if the daily weather and N
-deposition files for the scenario have already been generated using the tool described
-in Section 4.3.
The Management
-File Generation for Application tool interface is used to create (1) the
-EPIC management files for each crop to be used in the EPIC application-year
-modeling; and (2) the EPICRUN file for the rain-fed and irrigated simulations,
-which contains the linkages for the statistical weather and wind files, the
-soil files, and the management files for EPIC grid cells. The tool uses the
-FORTRAN programs ManGenFERT.exe and soildrain.exe stored under the ${FESTC_HOME}/
-epic/util/manageCreate directory with the common data files stored under ${FESTC_HOME}
-/epic/common_data/util/manageCreate and many other data files generated
-under each crop directory. Figure 16 shows the tool interface used to generate
-management files for the test_case scenario. Users must make sure that
-the following two entries are selected correctly:
-
-
·
-Fertilizer Year – select 2001 or 2006. The common
-management and fertilizer data sets created under the ${FESTC_HOME}/epic/common_data/util/manageCreate
-will be usedaccordingly. This management tool uses the created
-fertilizer data types for the 10 crop production regions. Fertilizer for 2011
-will be available in a future release.
-
-
·
-Selected Crops – select one or more crops.
-
-
-
-
-
-
Figure 16. The Management
-File Generation for Application tool interface used
-for the test_case scenario.
-
-
After clicking the Run button, a
-script file is generated to compute the management files for the selected
-crops. The user submits the script file to the queue by clicking OK. After
-the job has finished, users should check the queue job and log file in the “scenario
-name”/scripts directory, based on the information provided in the Message
-Box (shown in Figure 16).
-
-
-
-
The tool will generate many output
-files under each crop (many of these are used just for verification). The tool
-generates the following files under the “scenario name”/“crop name”/app/manage
-directory:
-
-
·
-EPICRUNFILERAINDW.DAT – EPIC run file for rain-fed application
-simulation.
-
-
·
-EPICRUNFILEIRRDW.DAT – EPIC run file for irrigated application
-simulation.
-
-
·
-GRIDS_OPC.DAT – the list of management file names to be used in
-EPIC modeling.
-
-
·
-OPC/“GRIDID”0“BELD3 Crop Number”.OPC – grid cell EPIC
-management files under the OPC directory. Table 1 in Section 4.1 lists
-the crop numbers in the BELD data.
-
-
·
-tileDrain/SOILLIST.DAT – soil list file which contains
-tile drain information for EPIC simulations and is used when “tileDrain” is
-selected when running EPIC application simulations.
The EPIC Runs
-for Application tool interface is used to run the EPIC model for the
-simulation year (EPICapp.exe program), which is stored under the directory ${FESTC_HOME}/epic/
-model/current. Users must already have generated the site daily weather
-and N deposition files using the WRF/CMAQ-to-EPIC tool interface (see
-Section 4.3). N deposition input can be selected from the four available
-options – CMAQ, EPIC parameter input file, 2002-2006 5-year CMAQ average,
-and 2006-2010 5-year CMAQ average. Thetool uses input files stored primarily
-in the following directories:
-
-
·
-${FESTC_HOME}/epic/common_data/EPIC_model/app – contains
-the common model input files.
-
-
·
-scenarios/“scenario name”/share_data – contains the EPICCONT.DAT
-file, site files, site list file, daily weather and N deposition files, and
-weather list file.
-
-
·
- ${FESTC_HOME}/epic/common_data/statWeath – contains observed
-climate station statistical data.
-
-
·
-scenarios/“scenario name”/ “crop name” /app/manage – contains
-the run files, management files, and management list file.
-
-
·
-scenarios/“scenario name”/ “crop name”/spinup/rainf/SOL – contains
-the soil files to be used in the rain-fed simulations.
-
-
·
-scenarios/“scenario name”/ “crop name”/spinup/irr/SOL – contains
-the soil files to be used in the irrigated simulations.
-
-
Figure 17 shows
-the tool interface used for the test_case scenario. The Simulation Year
-is defined when the user creates the scenario. Users can select one or
-multiple crops for the simulation. After clicking the Run button, a script
-file is generated to run the rain-fed and irrigated EPIC application
-simulations for each crop. The EPIC application simulations will run for a two-year
-period (the previous year and the simulation year) using the same daily weather
-and N deposition files for the simulation year; the two-year period is needed to
-simulate a full growing season for fall-sown crops. The user submits the script
-file to the queue by clicking OK. After the job has finished, users should
-check the queue job and log file in the “scenario name”/scripts directory,
-based on the information provided in the Message Box (shown in Figure 17).
-
-
Users need to
-make sure that the following three fields are selected correctly:
-
-
·
-CO2 Level (ppm) - input the correct CO2
-level for the simulation (e.g. 380). The input level overwrites the CO2
-level defined in EPICCONT.DAT and site file.
-
-
·
-Daily Average N Deposition – select N input to be used in
-the simulation. Users can select using 1) the CMAQ N values in daily weather
-files, 2) values defined in EPIC input files, 3) daily average N input from the
-5-year CMAQ simulations from 2002 to 2006, or 4) daily average N input from the
-5-year CMAQ simulations from 2006 to 2010. The 5-year CMAQ N daily input files
-are stored under ${FESTC_HOME}/epic/common_data/EPIC_model. Future
-releases will include daily average N input from 5-year CMAQ simulations from
-2011 to 2015.
-
-
·
-Run TileDrain – select whether tile drain is applied for
-saturated soils. If YES is selected, SOILLIST file under scenarios/“scenario
-name”/“crop name”/app/manage/tileDrain will be used. The tile drain
-process is applied for all crops except hay (1, 2), alfalfa (3, 4), Other_Grass
-(5, 6) and rice (23, 24).
-
-
-
-
-
-
Figure 17. The EPIC
-Runs for Application tool interface used for the test_case scenario.
-
-
The tool generates many directories
-and files for each crop. The original EPIC output files are stored under the
-following two subdirectories in the “scenario name”/“crop name”/app directory:
-
-
·
-rainf – contains output from EPIC rain-fed application
-simulations for this crop.
-
-
·
-irr – contains output from EPIC irrigated application
-simulations for this crop.
-
-
The output data created for CMAQ
-modeling are stored under the following two subdirectories in the “scenario
-name”/output4CMAQ/app directory:
-
-
·
-year – contains average EPIC output data for the
-simulation year (one year) run for the crops simulated. These data are used
-primarily for QA purposes.
-
-
·
-daily – stores daily EPIC output data from EPIC
-application runs for the crops simulated. These data are used to extract the
-input for CMAQ bidirectional NH3 modeling and SWAT simulations.
EPIC is a field-based
-model that generates output in formatted text files. In the domain-based EPIC
-modeling within FEST-C, the crops in each grid cell are modeled individually.
-Thus, there are many text output files generated for each crop in each grid
-cell selected for EPIC modeling. In this section we first describe the EPIC
-Yearly Extraction tool and the EPIC-to-CMAQ tool. Developed in the
-SA Raster Tools system, these two tools extract yearly or daily EPIC output
-variables into NetCDF-format files for QA purposes and for CMAQ modeling. We
-then discuss the EPIC to SWAT tool which prepares SWAT input files from
-EPIC output and WRF/CMAQ weather and N deposition NetCDF file using many R
-codes. The Visualization tool interface, which allows users to prepare
-spatial views of the EPIC output variables in the created NetCDF files over
-their modeling scenario domain, is presented last in this section.
The EPIC
-Yearly Extraction tool is used to extract 48 crop-specific variables and 39
-crop-area-weighted variables into two NetCDF files from the yearly average EPIC
-output files for all simulated crops within the grid cells that were selected.
-The output from this tool is used primarily for QA purposes, to make sure that the
-EPIC simulation results appear to be spatially reasonable over the domain
-area. Figure 18 shows the tool interface used for the test_case
-scenario. The only item users need to select is an “Output Type”:
-
-
·
-EPIC SPINUP – select this to extract yearly average
-variables from the EPIC spin-up simulations. Yearly average variables from the
-last five years of the simulations are from the output stored under the “scenario
-name”/output4CMAQ/spinup/5years directory.
-
-
·
-EPIC APP – select this to extract yearly average variables
-from the EPIC simulations for the application year. The yearly average
-variables are from the output stored under the “scenario
-name”/output4CMAQ/app/year directory.
-
-
-
-
-
-
Figure 18. The EPIC
-Yearly Extraction tool interface used for the test_case scenario.
-
-
Table 4 lists all variables that
-are in the two EPIC output files created by the tool: epic2cmaq_year.nc
-(crop-specific output) and epic2cmaq_year_total.nc (crop-weighted output).
-These files are stored in one of the following two directories:
-
-
·
-scenarios/“scenario name”/output4CMAQ/spinup/toCMAQ – if
-the EPIC SPINUP output type is selected.
-
-
·
-scenarios/“scenario name”/output4CMAQ/app/toCMAQ – if the
-EPIC APP output type is selected.
-
-
-
-
Users should check the log file
-under their scenario’s scripts directory to see whether any errors
-occurred when the tool was run. If the user is visualizing the data using the
-VERDI tool for visualization, there is no time dimension. Data layers are assigned
-to individual crops (see Table 1 in Section 4.1 for the BELD crop numbers).
The EPIC to CMAQ
-tool is used to extract 13 variables from EPIC soil output files and 41
-variables from EPIC daily output files into NetCDF files for all simulated
-crops within the grid cells that were selected. The output from this tool is
-used as input to CMAQ bidirectional NH3 modeling over the domain
-area. Figure 19 shows the tool interface used for the test_case
-scenario.
-
-
The user needs to
-input the following two items:
-
-
·
-Output File Prefix – this is used as the file prefix for
-all of the NetCDF output file names
-
-
·
-Output Type – select “EPIC SPINUP” to extract
-yearly average variables from the EPIC spin-up simulations under the “scenario
-name”/output4CMAQ/spinup/5years directory and “EPIC APP” to extract
-yearly average variables from the EPIC simulations for the application year
-under the “scenario name”/output4CMAQ/app/year directory.
-
-
The following output files produced
-by the tool are stored under the scenarios/“scenario
-name”/output4CMAQ/app/toCMAQ directory:
-
-
·
-“Output File Prefix”_soil.nc – soil output file that
-contains 13 soil variables extracted from the EPIC soil output files (“scenario
-name”/output4CMAQ /app/daily/“BELD4 Crop Number”.NCS); these variables are
-listed in Table 5. L1 and L2 are for the soil depth from 0 to 1 cm and from 1 cm
-to 10 cm, respectively.
-
-
·
-“Output File Prefix”_timeYYYYMMDD.nc – daily NetCDF files
-for the simulation year. A daily NetCDF file contains 41 variables extracted
-from the EPIC daily output files (e.g. “scenario name”/output4CMAQ
-/app/daily/“BELD4 Crop Number”.NCD”); these variables are listed in Table 6.
-L1, L2, and T1 are for the soil depth from 0 to 1 cm, from 1 cm to 10 cm,
-and from 0 cm to the full Baumer soil profile depth, which can be more than
-1 m.
-
-
-
-
-
-
Figure
-19. The EPIC to CMAQ tool interface used for the test_case
-scenario.
-
-
-
-
Table 5. EPIC to CMAQ soil output variables
-
-
-
-
-
-
-
Index
-
-
-
Name
-
-
-
Soil
- Variable
-
-
-
Index
-
-
-
Name
-
-
-
Soil
- Variable
-
-
-
-
-
1
-
-
-
L1_SoilNum
-
-
-
Soil Number (none)
-
-
-
8
-
-
-
L2_Bulk_D
-
-
-
Layer2 Bulk Density (t/m**3)
-
-
-
-
-
2
-
-
-
L1_Bulk_D
-
-
-
Layer1 Bulk Density (t/m**3)
-
-
-
9
-
-
-
L2_Wilt_P
-
-
-
Layer2 Wilting Point (m/m)
-
-
-
-
-
3
-
-
-
L1_Wilt_P
-
-
-
Layer1 Wilting Point(m/m)
-
-
-
10
-
-
-
L2_Field_C
-
-
-
Layer2 Field Capacity (m/m)
-
-
-
-
-
4
-
-
-
L1_Field_C
-
-
-
Layer1 Field Capacity (m/m)
-
-
-
11
-
-
-
L2_Porosity
-
-
-
Layer2 Porosity (%)
-
-
-
-
-
5
-
-
-
L1_Porosity
-
-
-
Layer1 Porosity (%)
-
-
-
12
-
-
-
L2_PH
-
-
-
Layer2 PH (none)
-
-
-
-
-
6
-
-
-
L1_PH
-
-
-
Layer1 PH (none)
-
-
-
13
-
-
-
L2_Cation
-
-
-
Layer2 Cation Ex (cmol/kg)
-
-
-
-
-
7
-
-
-
L1_Cation
-
-
-
Layer1 Cation Ex (cmol/kg)
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Table 6. EPIC to CMAQ daily output variables
-
-
-
-
-
-
-
Index
-
-
-
Name
-
-
-
Variable
-
-
-
Index
-
-
-
Name
-
-
-
Variable
-
-
-
-
-
1
-
-
-
DN
-
-
-
N-NO3 Denitrification (kg/ha)
-
-
-
22
-
-
-
L2_NH3
-
-
-
Layer2 N - Ammonia (kg/ha)
-
-
-
-
-
2
-
-
-
DN2
-
-
-
N-N2O from NO3 Denitrification
- (kg/ha)
-
-
-
23
-
-
-
L2_ON
-
-
-
Layer2 Organic N (kg/ha)
-
-
-
-
-
3
-
-
-
HMN
-
-
-
OC Change by Soil Respiration
- (kg/ha)
-
-
-
24
-
-
-
L2_C
-
-
-
Layer2 Carbon (kg/ha)
-
-
-
-
-
4
-
-
-
NFIX
-
-
-
N Fixation (kg/ha)
-
-
-
25
-
-
-
L2_NITR
-
-
-
Layer2 N - Nitrified NH3
- (kg/ha)
-
-
-
-
-
5
-
-
-
GMN
-
-
-
N Mineralized (kg/ha)
-
-
-
26
-
-
-
T1_DEP
-
-
-
Layert Depth (m)
-
-
-
-
-
6
-
-
-
YW
-
-
-
Wind Erosion (ton/ha)
-
-
-
27
-
-
-
T1_BD
-
-
-
Layert Bulk Density (t/m**3)
-
-
-
-
-
7
-
-
-
FPO
-
-
-
Organic P Fertilizer (kg/ha)
-
-
-
28
-
-
-
T1_NO3
-
-
-
Layert N - Nitrate (kg/ha)
-
-
-
-
-
8
-
-
-
FPL
-
-
-
Labile P Fertilizer (kg/ha)
-
-
-
29
-
-
-
T1_NH3
-
-
-
Layert N - Ammonia (kg/ha)
-
-
-
-
-
9
-
-
-
MNP
-
-
-
P Mineralized (kg/ha)
-
-
-
30
-
-
-
T1_ON
-
-
-
Layert Organic N (kg/ha)
-
-
-
-
-
10
-
-
-
L1_DEP
-
-
-
Layer1 Depth (m)
-
-
-
31
-
-
-
T1_C
-
-
-
Layert Carbon (kg/ha)
-
-
-
-
-
11
-
-
-
L1_BD
-
-
-
Layer1 Bulk Density (t/m**3)
-
-
-
32
-
-
-
T1_NITR
-
-
-
Layert N - Nitrified NH3
- (kg/ha)
-
-
-
-
-
12
-
-
-
L1_SW
-
-
-
Layer 1 Soil Moisture (mm)
-
-
-
33
-
-
-
L1_ANO3
-
-
-
Layer1 N-NO3 AppRate (kg/ha)
-
-
-
-
-
13
-
-
-
L1_NO3
-
-
-
Layer1 N - Nitrate (kg/ha)
-
-
-
34
-
-
-
L1_ANH3
-
-
-
Layer1 N-NH3 AppRate (kg/ha)
-
-
-
-
-
14
-
-
-
L1_NH3
-
-
-
Layer1 N - Ammonia (kg/ha)
-
-
-
35
-
-
-
L1_AON
-
-
-
Layer1 ON AppRate (kg/ha)
-
-
-
-
-
15
-
-
-
L1_ON
-
-
-
Layer1 Organic N (kg/ha)
-
-
-
36
-
-
-
L2_ANO3
-
-
-
Layer2 N-NO3 AppRate (kg/ha)
-
-
-
-
-
16
-
-
-
L1_C
-
-
-
Layer1 Carbon (kg/ha)
-
-
-
37
-
-
-
L2_ANH3
-
-
-
Layer2 N-NH3 AppRate (kg/ha)
-
-
-
-
-
17
-
-
-
L1_NITR
-
-
-
Layer1 N - Nitrified NH3
- (kg/ha)
-
-
-
38
-
-
-
L2_AON
-
-
-
Layer2 ON AppRate (kg/ha)
-
-
-
-
-
18
-
-
-
L2_DEP
-
-
-
Layer2 Depth (m)
-
-
-
39
-
-
-
LAI
-
-
-
Leaf Area Index (none)
-
-
-
-
-
19
-
-
-
L2_BD
-
-
-
Layer2 Bulk Density (t/m**3)
-
-
-
40
-
-
-
CPHT
-
-
-
Crop Height (m)
-
-
-
-
-
20
-
-
-
L2_SW
-
-
-
Layer 2 Soil Moisture (mm)
-
-
-
41
-
-
-
FBARE
-
-
-
Bare Land Fraction for Wind
- Erosion (Fraction)
-
-
-
-
-
21
-
-
-
L2_NO3
-
-
-
Layer2 N - Nitrate (kg/ha)
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Note:
- EPIC is a daily time step model while the CMAQ bidirectional NH3
- flux model is at a time scale which could be less than 10 minutes.
-
-
-
-
-
-
-
-
-
When the user clicks the Run
-button, a script file is generated under the scenario’s scripts directory.
-The script file is submitted to the queue for execution after the user clicks
-OK. A CMAQ-ready file is generated for each day and is viewable in VERDI. After
-the queue job has completed, users should check the log file under the scripts
-directory to see whether any errors occurred during execution.
The EPIC to SWAT tool is used
-to extract EPIC output and WRF/CMAQ weather and N deposition data for SWAT
-simulations in 8-digit HUC watersheds defined by users. “EPIC”, “NDEP”, and “DailyWETH”
-are tools which users can click in any order to aggregate EPIC daily output and
-N deposition and weather data in CMAQ grid format into the different areas listed.
-After aggregated EPIC, N deposition, and weather files are created, users can
-click “SWAT INPUTS” to generate SWAT-ready input files. The output from
-“SWAT INPUTS” can be used by SWAT modelers to replace default or “traditional”
-SWAT weather, atmospheric deposition and agricultural land nutrient and runoff input.
- Figure 20 shows the tool interface which is used for the test_case
-scenario. Users need to make sure that the following fields are filled and selected
-correctly:
-
-
·
-HUC8 Delivery Ratio File – EPIC to SWAT integration file.
-This text file contains SWAT 8-digit HUC watershed information with average
-delivery ratios from EPIC edge-of-field output to SWAT watershed output. Users
-can view the delivery ratio file – “test_case/share_data/subbasins-mapping_test_case.csv”
-included for the test_case scenario for items and format required.
-
-
·
-Daily Average N Deposition – select the source of N
-deposition for SWAT extraction. Users can select CMAQ application year N
-deposition or one of the 5-year average CMAQ N deposition.
-
-
·
-Area Selection – select area for generating SWAT-ready
-input files by the “SWAT INPUTS” button. The current system only works for
-8-digit HUC SWAT input file generation regardless of which area is selected.
-The “EPIC”, “NDEP”, and DailyWETH” extraction buttons will generate aggregated
-data for all areas listed.
-
-
-
-
-
-
Figure 20. The
-EPIC to SWAT interface.
-
-
The button tools with descriptions
-in this subinterface are:
Table 7. Conversion of EPIC
-daily output to SWAT point source input
-
-
-
-
-
-
Notes: Area is for the crop area in a specific
-grid. ∑ is the summation for all grids
-in a region (e.g. HUC8).
-
-
-
-
-
-
·
-NDEP - aggregate daily N deposition variables required by
-SWAT (Table 8) from daily deposition NetCDF file generated from CMAQ to all
-areas listed on the interface (Domain, State, County, HUC8, HUC6, and HUC2). This
-tool uses the R program epic2swat_extract_daily_ndepCMAQ.R stored under ${FESTC_HOME}/epic/util/swat.
-After clicking the NDEP button, a script file is generated to run the program
-using all information defined by environment variables. The user submits the
-script file to the queue by clicking OK. After the job is finished, users
-should check the queue job and log file in the “scenario name”/scripts
-directory, based on the information provided in the Message Box (shown in
-Figure 20). The output files from the tool are stored under the sub-directories
-with corresponding area names in the “scenario name”/output4SWAT/NDEP directory.
-
-
-
-
-
-
-
-
-
-
Table 8. CMAQ N Deposition
-to SWAT
-
-
-
-
-
-
Note: N is the total
-number of grid cells in a specific region (e.g. HUC8).
-
-
-
-
·
-DailyWETH -aggregate
-daily weather variables required by SWAT (Table 9) from daily weather NetCDF
-file generated from WRF to all areas listed on the interface (Domain, State,
-County, HUC8, HUC6, and HUC2). This tool uses the R program epic2swat_extract_daily_metCMAQ.R
-stored under ${FESTC_HOME}/epic/util/swat. After clicking the DailyWETH
-button, a script file is generated to run the program using all information
-defined by environment variables. The user submits the script file to the
-queue by clicking OK. After the job is finished, users should check the queue
-job and log file in the “scenario name”/scripts directory, based on the
-information provided in the Message Box (shown in Figure 20). The output files
-from the tool are stored under the sub-directories with corresponding area
-names in the “scenario name”/output4SWAT/dailyWETH directory.
-
-
-
-
-
-
-
-
-
Table 9. WRF daily weather to
-SWAT
-
-
-
-
-
-
Note: N is the total
-number of grid cells in a specific region (e.g. HUC8).
-
-
-
-
-
-
·
-SWAT INPUTS– generate SWAT-ready input files from aggregated
-daily EPIC, weather, and N deposition files by the previous three button tools
-for the watersheds specified in the “HUC8 Delivery Ratio File” field. This
-tool calls the R program extract_swatInputs.R stored under ${FESTC_HOME}/epic/util/swat.
-After clicking the “SWAT INPUTS” button, a script file is generated to run the program
-using all information defined by environment variables. The user submits the
-script file to the queue by clicking OK. After the job is finished, users
-should check the queue job and log file in the “scenario name”/scripts
-directory, based on the information provided in the Message Box (shown in
-Figure 20). The output files from the tool are stored under the
-sub-directories for EPIC, weather, and N deposition individually in the “scenario
-name”/output4SWAT/swat_inputs directory.
The Visualization
-tool interface is used to invoke the VERDI interface to view a selected NetCDF
-data set. Figure 21 shows the appearance of the tool interface before an input
-file has been selected. Users can select the data type on the left side of the
-interface window and then by browse through the file systems to select a NetCDF
-file created or used within the FEST-C system (e.g., an EPIC output NetCDF file
-created by the previous two tools, a BELD4 data set, MCIP and CMAQ data sets, a
-daily weather and N deposition NetCDF output file). Clicking the Display button
-invokes the VERDI interface to visualize the selected NetCDF file. Note:
-For this to work properly, the user has to have set the VERDI system in the
-FEST-C configuration file config.properties (see Section 1.3).
-Information on how to use the VERDI system can be obtained from the CMAS VERDI
-site: http://www.cmascenter.org/verdi/.
-
In this release,
-2011 NLCD/MODIS data is available to produce crop fractions for Canada and the
-US. To accompany this data, a future release will include an updated
-fertilizer type scenario for 2011. In addition, we will continue to improve
-the crop fraction coverage with the upcoming NLCD 2016 release using the USDA
-2017 census data and corresponding crop census data for Canada and Mexico. We
-are continuing our efforts to improve the C-N-P budgets within this systems for
-different crops. We are also exploring the possibility of moving to computing
-crop land use data directly from USDA National Agricultural Statistics Service (NASS)
-Cropland Data Layer (CDL) data. This would provide higher-resolution crop
-spatial information, however, CDL data do not include some information that is
-critical for FEST-C EPIC (such as differentiation between irrigated and
-rain-fed crops). Thus, further exploration on using this data set in
-combination with other irrigation data is needed.
-
-
-
-
-
-
-
-
+
+
+
+
+
+NOTE: Review and QA of all work products is included with the hours for
+those work products
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
User’s Guide for the Fertilizer
+Emission Scenario Tool for CMAQ (FEST-C) Version 1.4
+
+
+
+
+
+
+
+
+
+
Limei Ran1, Ellen Cooter1,
+Dongmei Yang2, Verel Benson3, Yongping Yuan4, Adel
+Hanna2, Val Garcia1
+
+
+
+
+
+
1Atmospheric Model Application and
+Analysis Branch, Computational Exposure Division, USEPA/ORD/NERL, Research
+Triangle Park, NC 27711
+
+
+
+
2Institute for the Environment, University
+of North Carolina at Chapel Hill, 100 Europa Dr., Chapel Hill, NC 27517
+
+
+
+
3Benson Consulting, Columbia, Missouri,
+USA
+
+
+
+
4Integrated Environmental Modeling Branch,
+Systems Exposure Division, USEPA/ORD/NERL, Research Triangle Park, NC 27711
+
+
+
+
+
+
+
+
+
+
Date: September
+20, 2018
+
+
+
+
+
+
+
Disclaimer
+
+
+
+
The information in this operational guidance document has
+been funded wholly or in part by the United States Environmental Protection
+Agency. The draft version of this document has not been subjected to the
+Agency’s peer and administrative review, nor has it been approved for
+publication as an EPA document. The draft document has been subjected to review
+by the Community Modeling and Analysis System Center only; this content has not
+yet been approved by the EPA. Mention of trade names or commercial products
+does not constitute endorsement or recommendation for use.
+
+
+
+
Acknowledgments
+
+
+
+
The development of the FEST-C
+system is currently being supported by the U.S. EPA’s Computational Exposure
+Division (CED) under U.S. EPA contract EP-W-16-014, “Operation of the Center
+for Community Air Quality Modeling and Analysis (CMAS)” in support of Office of
+Research and Development Air Climate and Energy, Safe and Sustainable Waters
+and Safe and Healthy Communities Research Programs. This work was also
+supported under prior U.S. EPA contracts: EP W 09 023, “Operation of the Center
+for Community Air Quality Modeling and Analysis (CMAS),” and EP D-12-044,
+“Emissions, Air Quality, and Meteorological Modeling Support (EMAQ).” We
+greatly appreciate the continuing and generous intellectual support we have
+received from Dr. Jimmy R. Williams at Texas A&M AgriLife Research,
+Blackland Research & Extension Center (Temple, TX). We thank Joe Slater,
+Manager of Fertilizer/AG Lime Control Services, University of Missouri
+Agricultural Experiment Station at Columbia, MO, for his invaluable insights
+regarding fertilizer sales and use. Finally, we thank Dr. Qun He for his
+design and support on the FEST-C interface.
The Fertilizer
+Emission Scenario Tool for CMAQ (FEST-C) (http://www.cmascenter.org/fest-c/)
+is a Java-based interface system that facilitates the integration of
+agriculture, atmosphere, and hydrology simulations at large scales. With an
+adapted Environmental Policy Integrated Climate (EPIC) model (http://epicapex.tamu.edu/
+epic/) for grassland and crop production, the system is primarily
+used to simulate daily soil carbon (C), nitrogen (N), and phosphorus (P) cycles
+on agricultural lands with atmospheric conditions and management practices
+including fertilization and irrigation. The FEST-C interface
+with simple tool buttons guides users through EPIC simulations and output
+extractions to generate the required input for bidirectional NH3
+modeling performed using the Community
+Multiscale Air Quality (CMAQ) modeling system (http://www.cmascenter.org/cmaq/). In addition to its application for air quality
+modeling, the system has been enhanced to integrate with the Soil and Water
+Assessment Tool (SWAT, https://swat.tamu.edu/)
+for watershed hydrological simulations. FEST-C enables the extraction of
+SWAT-ready input files with nutrients and water runoffs from agricultural lands
+and weather and N deposition from atmospheric models for simulating nitrogen
+fate and transport in watersheds. The FEST-C system is developed by EPA
+scientists, Institute for the Environment at the University of North Carolina
+at Chapel Hill (UNC), and Benson Consulting with the help from the Texas A&M AgriLife Research. UNC and Benson
+Consulting were supported under contract to the U.S. EPA Office of Research and
+Development.
+
+
The EPA EPIC
+implementation requires no previous estimates of fertilizer application; it estimates
+daily soil N conditions with fertilizer applications based entirely on
+simulated plant demand in response to local soil and weather conditions. The
+FEST-C interface associates EPIC simulations spatially to the CMAQ domain covering
+the conterminous United States (CONUS) and resolution through the current
+release of the Spatial Allocator (SA) Raster Tools system (http://www.cmascenter.org/sa-tools/)
+that has been developed under the Community Modeling and Analysis System (CMAS)
+Center. Figure 1 displays the process diagram of FEST-C linkage with the Weather
+Research and Forecasting (WRF, http://www2.mmm.ucar.edu/wrf/users/),
+CMAQ, and SWAT modeling systems. The Biogenic Emissions Landcover Database
+version 4 (BELD4), which is generated using the BELD4 tool in the SA Raster
+Tools system, is consistently used in the FEST-C system as well as the WRF/CMAQ
+modeling system. Previous WRF/CMAQ system results provide daily weather inputs
+and N deposition (optional), to the FEST-C system. In return, FEST-C generates
+soil properties (e.g. texture, moisture, and pH) and daily ammonium and nitrate
+N pool status for specific crops assigned to agricultural land areas in each of
+the CMAQ bidirectional NH3 modeling grids. With the integrated
+land-air-water models, FEST-C can be used in assessing not only the impacts of
+agricultural fertilization and management practices on water quantity and
+quality, air quality (NH3), and climate (N2O), but also
+the impacts of meteorology/climate and air quality (N deposition) on crop
+yield, soil erosion, watershed hydrology and quality, and overall C-N-P
+biogeochemical status of the agricultural ecosystem.
+
+
+
+
Figure 1. The FEST-C process diagram. The system
+works for any domains covering the CONUS and for any of the four WRF
+projections (longitude/latitude, Lambert Conformal Conic, Universal Polar Stereographic,
+and Mercator).
The version 1.4 release
+of the FEST-C system (FEST-C v1.4), which includes Java interface programs,
+EPIC FORTRAN codes, and associated data sets, was developed for Linux-based
+operating systems. The FEST-C Java interface is licensed under the Gnu Public
+License (GPL) version 3. The downloaded FEST-C system contains the following
+two directories:
+
+
·
+festc – contains the Java-based interface.
+
+
·
+epic – stores EPIC model version 0509, which has been modified to
+meet CMAQ input requirements; and related utilities and data for FEST-C v1.4.
+The original EPIC model description can be obtained from the Texas A&M
+AgriLife Research web site (http://epicapex.tamu.edu/files/2013/02/epic0509usermanualupdated.pdf
+). The documentation of the modified EPIC modeling system for CMAQ is included
+in the release of the FEST-C system. It provides detailed information on how
+this particular application of EPIC was developed.
+
+
The FEST-C system
+requires that the SA Raster Tools system be installed on the same computer system
+where FEST-C resides. For visualization, users can configure FEST-C to view NetCDF
+files using the Visualization Environment for Rich Data Interpretation (VERDI)
+or NCVIEW. Both the SA Raster Tools and the VERDI system and their
+documentation can be obtained from the CMAS web site (https://www.cmascenter.org/).
Users need to
+untar the obtained FEST-C and SA packages in their system from the CMAS Center
+Software Clearinghouse, https://www.cmascenter.org. The
+programs under FEST-C do not need any compiling, as the system comes with
+static compiled tools. The Raster Tools under SA, which are required by
+FEST-C, are not statically pre-compiled with the package. Depending on the
+system configuration, users may need to recompile the SA Raster tools if there
+is a library call error when running the tools using FEST-C. Assuming the
+downloaded FEST-C system is installed under the ${FESTC_HOME} directory
+and the Spatial Allocator is installed under the ${SA_HOME} directory,
+users should perform the following steps:
+
+
1.
+Modify ${FESTC_HOME}/festc/config.properties to set:
+
+
·
+work.dir – working directory for scenarios.
+
+
·
+epic.home – epic home directory, which should be ${FESTC_HOME}/epic;
+includes common data and executables for both EPIC and utilities.
+
+
·
+sa.home – installed Spatial Allocator directory, which should be ${SA_HOME}.
+
+
·
+visual.program.home – directory containing VERDI program.
+
+
·
+queue.cmd – queue job submission command such as qsub or bsub.
+Queue configuration (includes queue.name and queue.bigmem as well) for job
+submission has to be modified based on the user’s Linux system. Comment out
+(place # sign in the front) the three queue configurations if user’s systems do
+not have batch job queuing systems.
+
+
·
+queue.name – queue name.
+
+
·
+queue.bigmem – big memory setup to be used by the EPIC-to-CMAQ
+tool.
+
+
·
+debug – set to “true” to print out debug message. It is
+recommended that users not change this setting.
+
+
·
+allow.diff.check – set to “true” for checking consistent input in
+"Minimum Crop Acres" and "Fertilizer Year" fields
+from different subinterfaces. It is recommended that users not change this
+setting.
+
+
2.
+Make a directory called “festc” under the user’s home directory,
+which is assumed to be ${USER_HOME}, then copy ${FESTC_HOME}/config.properties
+to the ${USER_HOME}/festc directory. Change the work.dir setting if
+needed.
+
+
3.
+Modify ${FESTC_HOME}/festc/festc.sh file to set:
+
+
·
+FESTC_HOME to ${FESTC_HOME}/festc.
+
+
·
+-Xmx1024M to -Xmx2048M (optional) if users want to use 2 GB of
+RAM to run the interface.
+
+
·
+JAVA path (optional) if users do not want to use the Standard
+Edition Runtime Environment (JRE) version 8 for Linux 32-bit and 64-bit systems
+that is included in the FEST-C release.
+
+
4.
+Modify ${FESTC_HOME}/festc/festc_setup.csh to:
+
+
·
+Set the ${FESTC_HOME} and ${SA_HOME} directories.
+
+
·
+Source the file in the user’s .cshrc file.
+
+
5.
+Launch FEST-C 1.4 interface by typing:
+
+
·
+Type festc in any directory with the x-window capability.
+
+
Troubleshooting
+for the SA Raster Tools:
+
+
The SA Raster
+Tools have compiled tools which are stored under ${SA_HOME}/bin/64bits.
+The executable tools may not work depending on the system configuration. If
+there is a library error in running the SA Raster Tools within FEST-C, users
+should:
+
+
·
+Recompile all libraries under ${SA_HOME}/src/libs
+following instructions in the ${SA_HOME}/src/libs/README file.
+
+
·
+Modiy ${SA_HOME}/src/raster/Makefile for correct paths.
+
+
·
+Type “make clean” to clean previous compiled programs.
+
+
·
+Type “make” to compile the tools.
+
+
·
+Type “make -B install” or “make install” to install compiled
+tools.
The FEST-C
+interface facilitates the creation of the spatial associations, input files,
+soil initialization, and application processes required by EPIC. After
+preliminary site information and soils are assigned to each grid cell, a
+25-year “spin-up” simulation is required to generate initial soil and annual
+nitrogen demand conditions that represent the management system the user has
+defined. These initial conditions are provided to the year-specific
+application and management scheme.To launch the FEST-C interface
+system, type:
+
+
·
+festc or ${FESTC_HOME}/festc/festc.sh
+
+
+
+
The FEST-C interface allows the
+user to create, select, and manage different scenario management schemes under
+the File menu for EPIC modeling and sub-interface tools (see Figure 2).
+
+
+
+
Figure 2. The
+FEST-C interface system.
+
+
The system is described in detail
+in the remaining sections of this document:
+
+
+
Section 2: File Structures
+ for EPIC Modeling
+
Section 3:
+ Scenario Management Selections under the File Menu
+
Section 4: The Pre-EPIC File Generation Tools
+
+
+
1.
+BELD4 Data Generation
+
+
2.
+Crop Site Info Generation
+
+
3.
+WRF/CMAQ to EPIC
+
+
+
Section 5: EPIC
+ Spin-up Run Tools:
+
+
+
1.EPIC
+Site File Generation
+
+
2.Soil
+Match for EPIC Spin-up
+
+
3.
+Management File Generation for Spin-up
+
+
4.
+View/Edit EPIC Inputs
+
+
5.
+EPIC Runs for Spin-up
+
+
+
Section 6: EPIC
+ Application Run Tools
+
+
+
1.
+Management File Generation for Application
+
+
2.
+EPIC Runs for Application
+
+
+
Section 7:
+ Output Processing and Visualizing Tools:
The EPIC model
+and related utilities and data are stored under the ${FESTC_HOME}/epic directory.
+The working directory, which is named “scenarios”, is defined by work.dir
+in the user’s config.properties file. In the released tar, “scenarios”
+with a sample “test_case” scenario is provided for users to test the
+system under the epic directory. After the installation, users can move
+the “scenarios” directory to their working space and modify the work.dir
+entry for the new location. The file structure for EPIC modeling within the
+FEST-C system is displayed in Figure 3.
+
+
+
+
Figure 3. File
+structure for EPIC modeling (directory names in black and files in blue)
+
+
The epic
+directory contains four subdirectories: model, util, common_data, and doc;
+scenarios is under work.dir, which is specified in config file under home
+directory. These are described below.
+
+
·
+model – used to store the EPIC0509 model for FESTCv1.4. It
+includes one subdirectory:
+
+
-
+current: contains two EPIC models for spin-up and
+application simulations modified from EPIC0509 for CMAQ modeling. The EPIC0509
+with many updates were obtained from the Texas A&M AgriLife Research.
+
+
·
+doc – contains the documentation on the development of the
+EPIC modeling system for CMAQ (EPA_EPIC_application_v1_10252013.pdf).
+
+
·
+util – contains utility programs developed by Benson
+Consulting to generate site, soil, and management input files required by EPIC.
+It has four subdirectories:
+
+
-
+siteCreate: contains two programs used by the EPIC Site
+File Generation tool. The programs will not only generate EPIC site files but
+also link EPIC sites (grid cell centroids) to the BELD4 crop grid assignments
+and the 8-digit hydrologic cataloging units (HUCs) that contain the grid cells
+to be used in the soil matching program. Based on BELD4, this program assigns
+only those crops to a grid cell that BELD4 indicates are present at that
+location. This minimizes the number of crop-specific simulations performed
+across large domains. Users need to input the minimum crop acres, usually 0 or
+40 acres, but can be any value, to be included in EPIC simulations. The larger
+the cropland area minimum, the fewer crops that will be identified within a
+grid for EPIC, the fewer the grid-level simulations and the faster the overall
+system execution time.
+
+
-
+soilMatch: contains six soil matching programs used by the
+Soil Match for EPIC Spinup tool. Soils are selected based on the U.S.
+Department of Agriculture (USDA) 1997 Natural Resource Inventory (NRI)
+assignment of each crop in each 8-digit HUC to its most common HUC-8 soil type.
+
+
+
-
+manageCreate: contains programs to create EPIC management
+files for spin-up and application simulations by the Management File
+Generation for Spinup and Management File Generation for Application
+tools.
+
+
-
+swat: contains R codes and associated sample c-shell
+scripts to extract daily EPIC outputs, nitrogen deposition, and daily weather
+and to transfer them to SWAT input by clicking “EPIC”, “NDEP”, “DailyWETH”, and
+“SWAT INPUTS” sequentially. “SWAT INPUTS” is the last button users should click
+for aggregating all input data generated from the first three buttons into SWAT
+input format. The tool associated with “SWAT INPUTS” button requires a text
+file including delivery ratios for EPIC to SWAT integration. The sample text
+file is provided in the “share_data” directory under the test_case
+scenario as “subbasins-mapping_test_case.csv”. Users need to create this file
+for their corresponding watershed SWAT simulations.
+
+
-
+misc: contains utility programs for converting the
+generated BELD4 land use file in NetCDF format to be in IO/API format for the
+CMAQ bi-directional modeling (used by the BELD4 tool script), aggregating EPIC
+variables from yearly average extraction output by regions (e.g. 8-digit
+hydrologic units, states, counties, and the whole domain) and by crops (e.g. 42
+crops), summarizing N fertilizer application from extracted daily files for
+CMAQ, and generating files with selected EPIC daily output variables for the
+8-digit HUC areas. Users can access the README file in the directory and modify
+the C shell scripts in the subdirectories to use the tools. Users must have the
+required R libraries installed to run the R tool utilities.
+
+
·
+common_data – contains data sets needed for EPIC and
+utility programs. Also provided under this subdirectory is the file EPIC_42crop_names.txt,
+which contains the crop names and numbers, used in the FEST-C system. This
+directory has the following subdirectories:
+
+
-
+BaumerSoils: contains the soil data sets (22,838 soils) built
+with soil parameters from the Baumer database developed by Dr. Otto Baumer of National
+Soil Survey Laboratory (NSSL) at USDA. Dr. Baumer used the SOILS5 database and
+soil pedon data to develop the representative EPIC data sets. Benson
+Consulting utilized this information to create a subset of soil parameters in
+22,838 soil files to be used with EPIC. Detailed information on the data set
+creation can be obtained from the documentation of the EPIC modeling system for
+CMAQ. The raw soil profiles have been QA’d and missing descriptors have been
+filled so that they may be similar, but are not identical to the profiles available
+through the USGS STATSGO and SURRGO databases.
+
+
-
+EPIC_model: contains two 5-year average CMAQ N deposition
+daily and NetCDF files and the following two directories, which have common
+data files required by EPIC spin-up and application runs. The two 5-year
+average N deposition daily files under dailyNDep_2004 and dailyNDep_2008
+directories provide 5-year average CMAQ-simulated N deposition estimates for
+each calendar day over the periods 2002-2006 (referred to as “2002-2006 5-year
+CMAQ average” and 2006-2010 (referred to as “2006-2010 5-year CMAQ average”. These
+periods are provided to reflect the documented non-stationarity of N deposition
+trends. The average N deposition data are from the U.S. CMAQ domain which has
+the following properties:
The
+N deposition data from the nearest grid point in the average daily sets is selected
+in EPIC simulations.
+
+
·
+spinup – has common files used for EPIC spin-up
+simulations. For all crops except potatoes, the spin-up is set to run for 25
+years using the EPIC statistical weather generator (see the weather generator discussion
+in the EPIC documentation from the Texas A&M AgriLife Research). We have
+arbitrarily set the starting year as 1978 in EPICCONT.DAT. The termination
+date is not used by any subsequent codes and, since the driving data are
+statistically generated, do not exactly correspond to any observation year. For
+potatoes, the spin-up is set to run for 100 years from 1903 in EPICCONT_POTATOES.DAT.
+
+
+
·
+app – contains common files used for EPIC application
+simulations. In the FEST-C system, users input the target year (1 year only)
+for the EPIC application simulation. When a new scenario is created,
+EPICCONT.DAT from this directory is copied to the scenarios/“scenario
+name”/share_data directory and the simulation period is changed to 2 years
+starting from the year previous to the simulation year. Two years’ worth of
+weather data are needed to support production of fall-sown crops. At present,
+the same weather is used for both years. In the future, an option may be added
+to support input of two unique weather time series.
+
+
-
+gisFiles: includes U.S. counties, U.S. states plus some
+boundary areas in Canada and Mexico, U.S. 8-digit HUC shapefiles, and elevation
+and slope raster files. The readme file in the directory describes each file
+and associated attributes in detail.
+
+
-
+statWeath: contains weather station climate statistics
+files distributed with the standard EPIC package.
+
+
-
+util: includes common files used by the utility programs.
+This directory has two subdirectories:
+
+
·
+soilMatch – has input files used by the soil matching
+program to create EPIC soil files for the EPIC Runs for Spinup tool.
+
+
·
+manageCreate – contain files to be used in generating EPIC
+spin-up and application management files. We developed management data with
+fertilizer types applied in 2001 and 2006 for each of 10 production regions
+(Northeast, Appalachia, Southeast, Lake States, Corn Belt, Delta States,
+Northern Plains, Southern Plains, Mountain, and Pacific) (see the region map in
+Cooter et al. [2012], which is listed in the “Online Resources” section of the
+FEST-C web site (http://www.cmascenter.org/fest-c/).
+Fertilizer types (but not amounts) applied are based on fertilizer sales of 62
+major fertilizer types by state. Users can obtain detailed information from
+the documentation for the EPIC modeling system for CMAQ. It is recommended
+that 2001 be used for applications prior to 2006, and that 2006 be used for
+applications from 2006 through 2010. We anticipate that a 2011 fertilizer type
+file will be included in the next interim release. Fertilizer types applied
+are used by the EPIC management file generation for application, and they are
+stored under the following two subdirectories:
+
+
-
+2001: for 2001 fertilizer year management file
+generation.
+
+
-
+2006: for 2006 fertilizer year management file
+generation.
+
+
In
+both cases, regional fertilizer data information is stored under the directory:
+
+
-
+regionFert
+
+
·
+scenarios – contains EPIC application scenarios and it is
+the working directory for a user. The directory is described separately below
+this bulleted list.
+
+
+
+
In general, users should not change
+the data files described in the above directories. All files generated by
+users’ applications are stored under the scenarios directory. When the
+user creates a scenario by selecting “New Scenario” under the File menu,
+the following items are created:
+
+
·
+scenariosInfo – a metadata file that stores information for
+the created scenario, which is assumed to be named by the user as “scenario
+name”. This directory contains:
+
+
-
+“scenario name”: an XML file that stores the scenario information.
+
+
+
-
+logs: directory containing the script file used to create (or
+copy or delete as well) the scenario and execution log file.
+
+
·
+“scenario name” – scenario directory that will contain all
+generated files for this scenario.
+
+
Under each scenario directory, the
+following directories are created for EPIC modeling:
+
+
·
+share_data – contains all data sets generated for EPIC
+modeling and to be used by all crops modeled. The following two data subdirectories
+which store generated EPIC site files and daily weather files are included
+under this directory:
+
+
-
+SIT: contains EPIC site files.
+
+
-
+dailyWETH: contains daily weather and N files for EPIC
+modeling.
+
+
·
+scripts – stores script and log files created to run the
+tools within the FEST-C interface. All tools are executed through the Linux
+queue system. Users should always check the log file to make sure that the
+queue job completed correctly. Unwanted files under this directory should be
+cleaned out periodically.
+
+
·
+work_dir – contains some intermediate or temporary files
+created by the FEST-C tools. Not many files are created under this directory.
+
+
+
·
+21 crop dirs ( "HAY", "ALFALFA",
+"OTHER_GRASS", "BARLEY", "EBEANS",
+"CORNG", "CORNS", "COTTON", "OATS",
+"PEANUTS", "POTATOES", "RICE", "RYE",
+"SORGHUMG", "SORGHUMS", "SOYBEANS",
+"SWHEAT", "WWHEAT", "OTHER_CROP",
+"CANOLA", "BEANS") – the 21 crop directories are
+created by the EPIC Site File Generation tool. Under each crop
+directory there are many files that are created for generating EPIC input
+files. The spinup and app subdirectories described below are
+also created from management file generation and EPIC runs for spin-up and
+application:
+
+
-
+spinup: contains files created from the EPIC management
+file generation and EPIC runs for spin-up tools. It contains the following
+three subdirectories:
+
+
·
+manage – contains EPIC run files, EPIC site management
+files created by the Management File Generation for Spinup tool, and
+tile drain soil list file. The management files and tile drain soil list file are
+contained under the following subdirectories:
+
+
-
+OPC: contains the management schedule for each domain grid
+cell containing rain-fed and irrigated crop. Variables (schedule) can be
+interpreted using the documentation for the EPIC modeling system for CMAQ.
+
+
-
+tileDrain: contains the SOILLIST.DAT which has soil tile
+drain information for EPIC spinup runs. In general, if a soil is classified as
+hydric, then it is assumed to drain.
+
+
·
+rainf – contains files for each domain grid cell that are created
+by the EPIC Runs for Spinup tool from rain-fed crops. It contains the
+following output directories (see the EPIC documentation from the Texas A&M
+AgriLife Research):
+
+
-
+DFA: daily fertilizer and other output.
+
+
-
+NCM: monthly fertilizer and other output.
+
+
-
+NCS: monthly soil output.
+
+
-
+OUT: standard EPIC output file that contains various
+budget tables and summaries of the simulation which are useful for debugging.
+
+
-
+SOL: soil output files that are used as initial values for
+the application.
+
+
-
+TNA: annual fertilizer and other outputs.
+
+
-
+TNS: annual soil output.
+
+
·
+irr – contains files for each domain grid cell containing the
+particular crop that were created by the EPIC Runs for Spinup tool from
+irrigated crops. It contains the following output directories:
+
+
-
+DFA: daily fertilizer and other output.
+
+
-
+NCM: monthly fertilizer and other output.
+
+
-
+NCS: monthly soil output.
+
+
-
+OUT: standard EPIC output file that contains various
+budget tables and summaries of the simulation that are useful for debugging.
+
+
-
+SOL: soil output files.
+
+
-
+TNA: annual fertilizer and other outputs that are useful
+for debugging.
+
+
-
+TNS: annual soil output.
+
+
-
+app: contains files created from the management file
+generation and EPIC runs for application tools. It contains the following
+three subdirectories:
+
+
·
+manage – contains EPIC run files, EPIC site management
+files created by the Management File Generation for Application tool,
+and tile drain soil list file. Management files and the tile drain soil list
+file are contained under the following subdirectories:
+
+
-
+OPC: contains the management schedule for each domain grid
+cell containing rain-fed and irrigated crop. Variables (schedule) can be
+interpreted using the documentation for the EPIC modeling system for CMAQ.
+
+
-
+tileDrain: contains the SOILLIST.DAT which has soil tile
+drain information for EPIC application runs.
+
+
·
+rainf – contains files created by the EPIC Runs for
+Application tool from rain-fed crops. It contains the following output
+directories (see the EPIC documentation from the Texas A&M AgriLife
+Research):
+
+
-
+DFA: daily fertilizer and other output.
+
+
-
+NCM: monthly fertilizer and other output.
+
+
-
+NCS: monthly soil output.
+
+
-
+OUT: standard EPIC output file that contains various
+budget tables and summaries of the simulation (useful for debugging).
+
+
-
+SOL: soil output files.
+
+
-
+TNA: annual fertilizer and other outputs.
+
+
-
+TNS: annual soil output.
+
+
·
+irr – contains files created by the EPIC Runs for
+Application tool from rain-fed crops. It contains the following output
+directories:
+
+
-
+DFA: daily fertilizer and other output.
+
+
-
+NCM: monthly fertilizer and other output.
+
+
-
+NCS: monthly soil output.
+
+
-
+OUT: standard EPIC output file that contains various
+budget tables and summaries of the simulation (useful for debugging).
+
+
-
+SOL: soil output files.
+
+
-
+TNA: annual fertilizer and other output.
+
+
-
+TNS: annual soil output.
+
+
·
+output4CMAQ – stores EPIC output files and extracted NetCDF
+files for quality assurance (QA) and CMAQ bidirectional NH3
+modeling. This directory contains the two following subdirectories:
+
+
-
+spinup: contains all files created from EPIC spin-up
+simulations for CMAQ. It contains the following three subdirectories:
+
+
·
+5years – contains extracted average EPIC output for each
+crop from the last five years of the spin-up simulation. Files are named as
+“BELD4 Crop Number”.dat (see Table 1 in Section 4.1 for crop numbers).
+
+
·
+daily – stores daily EPIC output files for the EPIC spin-up
+simulation of each crop. “BELD4 Crop Number”.NCS is for soil output and “BELD4
+Crop Number”.NCD is for fertilizer and other daily output.
+
+
·
+toCMAQ – contains created NetCDF and IO/API files with
+EPIC spin-up output for selected modeling grid cells with crop data. The NetCDF
+output files are created using the FEST-C tools by extracting data files stored
+under the 5years or daily directories listed above.
+
+
-
+app: stores files created from EPIC application simulations
+for CMAQ. It contains the following three subdirectories:
+
+
·
+year – contains extracted average EPIC output for the EPIC
+application year. Files are named as “BELD4 Crop Number”.dat.
+
+
·
+daily – stores daily EPIC output files for the EPIC application
+simulation of each crop. “BELD4 Crop Number”.NCS is for soil output and “BELD4
+Crop Number”.NCD is for fertilizer and other daily output.
+
+
·
+toCMAQ – contains created NetCDF and CMAQ-ready IO/API
+files with the BELD4 data and EPIC application simulation results for the
+modeling domain. The NetCDF output files are created using the FEST-C tools by
+extracting data files stored under the year or daily directories
+listed above.
+
+
·
+output4SWAT – stores daily EPIC, N deposition, and
+meteorology files summarized by regions and SWAT-ready input files for SWAT
+simulation. This directory contains four subdirectories:
+
+
-
+dailyEPIC – contains runoff data extracted from EPIC daily
+output files. The extracted data are summarized by the domain, county, state, HUC2,
+HUC6, and HUC8.
-
+swat_inputs – contains SWAT-ready EPIC, weather, and N
+deposition input files in subdirectories named as dailydep, dailyweath,
+and EPICinputPoint.
There are five scenario management
+selections (as well as Exit) under the File menu at the upper left of the
+FEST-C tool bar: Open Scenario, New Scenario, Copy Scenario,
+Save Scenario, and Delete Scenario. Each of these is described
+below.
+
+
·
+Open Scenario – to open an already-created scenario. Users
+always need to either open or create (see next bullet) a scenario to work on.
+Users can select any one of the scenarios under the scenarios/scenariosInfo
+directory. After users open a scenario, information for the scenario, such as
+the domain description, will be automatically filled in by the FEST-C tool
+interface. Within the FEST-C system, users have to work within a scenario to
+execute any of the tools except the Visualization tool. Figure 4 shows
+the interface used to open the test case created in the FEST-C system (The test_case
+scenario is described at the beginning of Section 4).
+
+
+
+
Figure 4. Open Scenario selection
+window used to open the test_case scenario.
+
+
+
+
·
+New Scenario – to create a new scenario (versus opening
+one that’s already been created). In creating a new scenario, the user has to
+provide the following information for a CMAQ modeling domain and EPIC
+simulation year (see Figure 5):
+
+
-
+Rows, Columns: the number of rows and columns for the
+domain.
+
+
-
+XCellSize, YCellSize: x and y resolution for
+the grid cell.
+
+
-
+XMin, YMin: x and y coordinates of the lower
+left corner of the lower left grid cell. Users can often find this information
+in the GRIDDESC file in the Meteorology-Chemistry Interface Processor (MCIP)
+output.
+
+
+
+
Figure
+5. New Scenario selection window with input to create the test_case
+scenario within FEST-C.
+
+
+
+
-
+Proj4Projection: domain projection defined in Proj4 format
+(see details at http://geotiff.maptools.org/proj_list/).
+The interface sets the Lambert Conformal Conic projection, which is used by the
+CMAQ U.S. 12-km domain as the default. Users can change it to any projection
+supported for CMAQ modeling.
+
+
-
+Grid Name: user-supplied name for the domain, using no
+more than 16 alphanumeric characters and no spaces.
+
+
-
+Simulation Year: year (YYYY) for the EPIC simulation.
+FEST-C is designed to simulate yearly fertilizer application information for
+CMAQ bidirectional NH3 modeling.
+
+
-
+NLCD/MODIS Data Year: year (YYYY) for the NLCD/MODIS land
+cover data used for the EPIC simulation. NLCD/MODIS land cover data are required
+in the EPIC simulation within FEST-C for CMAQ bidirectional NH3
+modeling. Currently, users can select 2001, 2006, or 2011 NLCD/MODIS data
+year. 2016 NLCD/MODIS data selection will be added to the system in the
+future.
+
+
-
+Scenario Name: name for the scenario, using alphanumeric
+characters and no spaces.
+
+
When a new scenario is
+created, the following files and directories are created:
+
+
-
+scenarios/scenariosInfo/“scenario name”: XML file to store the scenario information.
+
+
-
+scenarios/“scenario name”: directory
+to store all generated information for this scenario. Some subdirectories are
+also generated under this scenario directory (see Section 2 for file
+structures).
+
+
-
+scenarios/“scenario name”/share_data/EPICCONT.DAT: contains
+EPIC constant parameters. The simulation period is a two-year period starting with
+the year before the simulation year.
+
+
·
+Copy Scenario – to copy an existing scenario under the scenarios/scenariosInfo
+directory to a new scenario with a defined simulation year, which can be the same
+as or different from the existing scenario year (see Figure 6). Note that if
+the existing scenario contains many crop simulations, this action can take a
+long time to complete in a background queue job.
+
+
+
+
+
+
Figure 6. Copy Scenario selection window.
+
+
+
+
·
+Save Scenario – to save a scenario after a user has worked
+on it. Only the input information for the scenario tool interfaces is saved.
+When the user performs the FEST-C tool actions, generated files are always
+saved under different directories, described in Section 2.
+
+
·
+Delete Scenario – to
+delete a scenario. This is also run as a background submission and can
+take some time. All directories and subdirectories for that scenario are
+deleted completely.
+
+
·
+Exit – to exit the FEST-C interface. You will be asked if
+you want to save the scenario you were working on before exiting the tool.
+
+
The action performed by making a selection
+under the File menu (e.g., copy, create, delete) is executed by a script file
+through the queue job. The script and log files are stored under the scenarios/scenariosInfo/logs
+directory.Users should check the log files under the directory to
+make sure that the selected action completely correctly.
Before describing the various
+FEST-C tools in Sections 4 through 7, we must first discuss the test_case
+scenario in the FEST-C system, because we use this scenario to demonstrate the
+input and output components on the tool interface. The test_case
+scenario is a small 12-km domain with 25 rows and 25 columns in the CMAQ
+standard projection. The domain is located in the northwest corner of Iowa and
+crosses into Minnesota, South Dakota, and Nebraska. Figure 7 illustrates the
+domain grid cells with the identification numbers (GRIDID) used in the FEST-C
+system; colors are used to indicate the crop percentage for each grid cell as generated
+from 2006 NLCD data. All 625 (25´25)
+12-km grid cells in this test domain have crop coverage, and most of them have
+more than 75% crop coverage. The GRIDID for a grid cell with row and column
+starting from 1 is defined as:
+
+
+(1)
+
+
where columns is the number
+of columns for the domain. Row and column start from 1 at the lower left
+corner cell in the domain. Users can compute the row and column for a grid
+cell with GRIDID as:
+
+
+ (2)
+
+
+
(3)
+
+
where floor is for rounding
+down the value and remainder is for taking the remainder from the
+division.
+
+
+
+
Figure 7.
+FEST-C test_case scenario 12-km domain in the U.S. northern Central Plains.
+Associated with each grid cell is an identification number (GRIDID) and a color
+that indicates crop coverage percentage. The domain’s cells are numbered from
+1 for the lower left corner cell to 625 for the upper right corner cell.
+
+
+
+
In Section 4,
+we discuss the first three tools in the FEST-C interface: the BELD4 Data
+Generation tool, the Crop Site Info Generation tool, and the WRF/CMAQ-to-EPIC
+tool. These are used to prepare site crop and spatial data for EPIC input file
+generation and to generate required daily weather data and optional nitrogen
+deposition data for the EPIC simulation year. All three tools were developed
+in the SA Raster Tools system.
EPIC modeling for a CMAQ domain requires BELD4 data, which are used for
+selecting grid cells with crop coverage. The BELD4 Data Generation tool
+allows users to compute the BELD4 dataset for a selected scenario. For detailed
+information, users can consult the SA Raster Tools documentation: https://www.cmascenter.org/sa-tools/.
+Figure 8 shows the interface used to compute the BELD4 dataset for the test_case
+scenario.
+
+
+
+
Figure 8. The BELD4 Data Generation tool
+interface for the test_case scenario.
+
+
Before running this tool, users
+need only to make sure that the following two entries are correct for their
+scenarios:
+
+
·
+NLCD/MODIS Data Year – the year defined when creating the
+scenario; it can be either 2001, 2006, or 2011. Processed 2001, 2006, and 2011
+crop tables from the U.S. and Canada are stored under the ${SA_HOME}/data
+directory for this tool. The 42 rain-fed and irrigated crops generated from
+the BELD4 tool and modeled in the FEST-C system are displayed in Table 1. In
+addition to crop numbers used in BELD4 (new version of BELD), the table also
+lists BELD3 (older version) numbers, because we started building the FEST-C
+system using the BELD3 data. Crop numbers used in EPIC modeling often follow
+the BELD3 crop numbers (from 22 to 63), but the output files from EPIC modeling
+for use in CMAQ use the BELD4 crop numbers (from 1 to 42). If a new crop is to
+be modeled in the FEST-C system, new crop tables under the SA data
+directory must be generated and the BELD4 tool has to be modified as well.
+Table 2 provides additional information on how crops are mapped to each EPIC crop
+type.
+
+
Table 1. The 42 rain-fed and
+irrigated crops modeled in the FEST-C system.
+
+
+
+
+
+
+
BELD4
+
+
+
BELD3
+
+
+
Crop Name
+
+
+
BELD4
+
+
+
BELD3
+
+
+
Crop Name
+
+
+
BELD4
+
+
+
BELD3
+
+
+
Crop Name
+
+
+
+
+
1
+
+
+
22
+
+
+
Hay
+
+
+
15
+
+
+
36
+
+
+
Cotton
+
+
+
29
+
+
+
50
+
+
+
SorghumSilage
+
+
+
+
+
2
+
+
+
23
+
+
+
Hay_ir
+
+
+
16
+
+
+
37
+
+
+
Cotton_ir
+
+
+
30
+
+
+
51
+
+
+
SorghumSilage_ir
+
+
+
+
+
3
+
+
+
24
+
+
+
Alfalfa
+
+
+
17
+
+
+
38
+
+
+
Oats
+
+
+
31
+
+
+
52
+
+
+
Soybeans
+
+
+
+
+
4
+
+
+
25
+
+
+
Alfalfa_ir
+
+
+
18
+
+
+
39
+
+
+
Oats_ir
+
+
+
32
+
+
+
53
+
+
+
Soybeans_ir
+
+
+
+
+
5
+
+
+
26
+
+
+
Other_Grass
+
+
+
19
+
+
+
40
+
+
+
Peanuts
+
+
+
33
+
+
+
54
+
+
+
Wheat_Spring
+
+
+
+
+
6
+
+
+
27
+
+
+
Other_Grass_ir
+
+
+
20
+
+
+
41
+
+
+
Peanuts_ir
+
+
+
34
+
+
+
55
+
+
+
Wheat_Spring_ir
+
+
+
+
+
7
+
+
+
28
+
+
+
Barley
+
+
+
21
+
+
+
42
+
+
+
Potatoes
+
+
+
35
+
+
+
56
+
+
+
Wheat_Winter
+
+
+
+
+
8
+
+
+
29
+
+
+
Barley_ir
+
+
+
22
+
+
+
43
+
+
+
Potatoes_ir
+
+
+
36
+
+
+
57
+
+
+
Wheat_Winter_ir
+
+
+
+
+
9
+
+
+
30
+
+
+
BeansEdible
+
+
+
23
+
+
+
44
+
+
+
Rice
+
+
+
37
+
+
+
58
+
+
+
Other_Crop
+
+
+
+
+
10
+
+
+
31
+
+
+
BeansEdible_ir
+
+
+
24
+
+
+
45
+
+
+
Rice_ir
+
+
+
38
+
+
+
59
+
+
+
Other_Crop_ir
+
+
+
+
+
11
+
+
+
32
+
+
+
CornGrain
+
+
+
25
+
+
+
46
+
+
+
Rye
+
+
+
39
+
+
+
60
+
+
+
Canola
+
+
+
+
+
12
+
+
+
33
+
+
+
CornGrain_ir
+
+
+
26
+
+
+
47
+
+
+
Rye_ir
+
+
+
40
+
+
+
61
+
+
+
Canola_ir
+
+
+
+
+
13
+
+
+
34
+
+
+
CornSilage
+
+
+
27
+
+
+
48
+
+
+
SorghumGrain
+
+
+
41
+
+
+
62
+
+
+
Beans
+
+
+
+
+
14
+
+
+
35
+
+
+
CornSilage_ir
+
+
+
28
+
+
+
49
+
+
+
SorghumGrain_ir
+
+
+
42
+
+
+
63
+
+
+
Beans_ir
+
+
+
+
+
+
+
Table 2. Mapping of the 42 rain-fed and
+irrigated crops for U.S. and Canada (Mexico will be available in a future
+release).
=Irrland – sum of irr crops
+ (if irrland is larger)
+
+
+
N/A
+
+
+
+
+
39
+
+
+
Canola
+
+
+
CANOLA
+
+
+
Canola (rapeseed)
+
+
+
+
+
40
+
+
+
Canola_ir
+
+
+
CANOLA, IRRIGATED
+
+
+
N/A
+
+
+
+
+
41
+
+
+
Beans
+
+
+
PEAS, DRY EDIBLE
+
+
+
Dry field peas; Lentils;
+ Chick peas
+
+
+
+
+
42
+
+
+
Beans_ir
+
+
+
PEAS, DRY EDIBLE, IRRIGATED
+
+
+
N/A
+
+
+
+
+
+
+
+
+
·
+NLCD/MODIS List File – set to the fixed-format text file that
+contains downloaded NLCD land use, imperviousness, and canopy data files and
+downloaded tiled MODIS land cover (MCD12Q1) data sets. The interface sets the
+file ${SA_HOME}/data/ nlcd_modis_files_{NLCD/MODIS Data Year}.txt as the default
+file. Users need to download NLCD and MODIS land cover data sets and modify
+the text file accordingly using the paths and names for the downloaded data
+sets. The text file must have the same fixed titles and format as in the
+default file. ${SA_HOME}/data/sat/README contains instructions on downloading
+the data sets. If users want to generate a 2001 BELD4 data set, 2001 NLCD and
+MODIS land cover data sets have to be downloaded from the NLCD web site (https://www.mrlc.gov/finddata.php)
+and MODIS land products web site (https://lpdaac.usgs.gov/products/modis_products_
+table/mcd12q1 ), and the nlcd_modis_files_2001.txt list file has to
+be modified following the format in this sample file.
+
+
+
+
When the Run button on the BELD4
+Data Generation tool interface is clicked, a c-shell (csh) script file is
+generated under the scenarios/”scenario name”/scripts directory.This
+file is submitted to the system as a queue job after the user clicks OK, and a
+log file for the job execution will be generated after the queue job is finished.
+Users should always check for error messages in the log file, based on the
+information provided in the Message Box (shown in Figure 8).
+
+
+
+
The outputs produced by the tool
+are the following files, which are stored under the ”scenario
+name”/share_data and ”scenario name”/output4CMAQ/app/ toCMAQ directories:
+
+
·
+beld4_{Gird Name}_{NLCD/MODIS Data Year}.nc (beld4_TESTGRIDS_2006.nc
+for the test_case scenario) – both NetCDF and I/O API formatted files
+containing gridded percentage data for imperviousness, canopy, 194 tree species,
+40 NLCD/MODIS land cover classes, and 42 BELD4 crops are created. The NetCDF domain-
+and resolution-specific data file is a required input to the Crop Site Info
+Generation tool discussed in the next section. CMAQ bi-directional NH3
+modeling requires the I/O API formatted BELD4 output file under the ”scenario name”/output4CMAQ/app/toCMAQdirectory.
+
+
·
+beld4_{Grid Name}_{ NLCD/MODIS Data Year}.txt
+(beld4_TESTGRIDS_2006.txt for the test_case scenario) – a text table
+containing gridded percentage data for imperviousness, canopy, and 40 NLCD/MODIS
+land cover classes for a specific domain and grid resolution.
The Crop Site Info Generation tool is used to
+compute EPIC site (grid cells) and crop information for EPIC modeling. The
+tool processes spatial boundary shapefiles and elevation and slope image data
+to generate site information data needed in EPIC modeling. Figure 9 displays
+the tool interface used to compute the crop site information for the test_case
+scenario. The tool uses the spatial data sets stored under ${FESTC_HOME}/epic/common_data/gisFiles
+and input files from the ${SA_HOME}/data directory. Before running this
+tool, users need only to choose the following two entries for this tool:
+
+
·
+BELD4 NetCDF File – this is the BELD4 NetCDF file generated
+using the BELD4 tool described above. The file name should be of the form beld4_{Gird
+Name}_{NLCD/MODIS Data Year}.nc (e.g. beld4_TESTGRIDS_2006.nc for the test_case
+scenario). If this file does not exist, the interface will indicate this after
+Run is clicked. If this is the case, users need to either run the BELD4 tool to
+generate this data set or input anywhere within the computer system a BELD4 NetCDF
+file that is based on the same domain as the domain of the scenarios with which
+the users are working.
+
+
·
+Minimum Crop Acres – this is the minimum crop area for at
+least one of the 42 possible crops in a grid cell, if the grid cell is to be
+selected for EPIC simulation. For instance, users can set it to be 40 acres for
+representing the smallest commercially viable farm size. For finer grid
+resolutions or for domains in which smaller commercial enterprises make up a
+significant fraction of farms (e.g., orchards, some vegetable and specialty
+crops), users may need to reduce this minimum to adequately characterize the
+distribution of agricultural lands. For including all cropland in simulations,
+users should set it to be 0.0. Doing so may increase the number of simulated
+grid cells (sites), which can also increase run time.
+
+
+
+
Figure 9. The Crop Site Info Generation tool
+interface used for the test_case scenario.
+
+
After Run has
+been clicked and the queue job has completed, users should check the log file
+under their scenario’s scripts directory to see whether any errors occurred
+during execution. The tool generates the following three text output files
+stored under scenarios/”scenario name”/share_data:
·
+EPICSites_Crop.csv – contains the GRIDID, acreages of 42 possible
+crops within each grid cell, COUNTRY, and HUC8 items used in EPIC site and soil
+file generation.
+
+
·
+allSites_Info.csv – contains the GRIDID, XLONG, YLAT, ELEVATION,
+SLOPE_P, HUC8, REG10, STFIPS, CNTYFIPS, GRASS, CROPS, CROP_P, COUNTRY, and
+COUNTRY-PROVINCE items for all grid cells to be used in the SWAT watershed
+extraction.
The WRF/CMAQ-to-EPIC
+tool is used to generate EPIC daily weather data and, if the option is
+selected, N deposition inputs to be used in EPIC application simulations. The
+tool reads EPIC grid cell information stored in the allSites_Info.csv file
+generated using the Crop Site Info Generation tool (the previous tool).
+It extracts daily weather input data from WRF simulation output (METCOR2D data
+arrays) into a NetCDF file and EPIC-ready text files. Users need to make sure
+that the right version of the WRF/CMAQ-to-EPIC tools are compiled under
+the Spatial Allocator. There are two versions of this tool: one for CMAQ before
+version 5.2 and one for CMAQ v5.2 or above version.
+
+
There are up to
+four options currently available for the inclusion of daily atmospheric deposition
+data in EPIC simulations: (1) no N deposition, (2) the original EPIC
+default (assumes a constant N concentration of 0.8 ppm in precipitation and no
+dry deposition), and (3) CMAQ hourly output files (DRYDEP, WETDEP1) from a
+previous CMAQ run (unidirectional or bidirectional), and (4) a pre-processed
+set of 5-yr average CMAQ deposition estimates for the period 2002-2006 (labeled
+as 2004) and 2006-2010 (labeled as 2008). In the vicinity of areas receiving
+significant atmospheric dry deposition, such as areas immediately surrounding
+large animal feeding operations, this information can impact EPIC
+biogeochemistry and subsequent estimates of plant N application needs. If
+speciated N deposition is available, oxidized wet and dry deposition are
+assumed to enter the EPIC soil nitrate pool, and reduced wet and dry deposition
+is assumed to enter the EPIC soil ammonium pool. If CMAQ hourly output files
+are selected for this tool, the MCIP and CMAQ domains must be the same as the
+domain defined in the EPIC scenario. Figure 10 shows this tool interface as used
+for the test_case scenario.
+
+
+
+
Figure 10. The WRF/CMAQ-to-EPIC tool interface
+used for the test_case scenario.
+
+
Before running this tool, users must
+provide input for the following three items in the interface:
+
+
·
+MCIP Data Directory – this directory contains processed
+WRF files output by MCIP for the EPIC simulation year. This tool requires only
+MCIP METCRO2D output files. METCRO2D output files must have names of the
+format METCRO2D*{DATE} in which * can be any non-digit characters and {DATE}
+can be in one of four date formats: YYYYMMDD, YYMMDD, YYYYDDD, or YYDDD (e.g., METCRO2D_051226)
+
+
·
+Deposition Selection – used to select one of the following
+three options:
+
+
-
+CMAQ deposition directory: select this option to use CMAQ
+deposition output files. If this is selected, users must set the CMAQ
+deposition file directory in the next field on the interface.
+
+
-
+Default: this option assumes that the N mixing ratio is 0.8 ppm
+for wet oxidized N deposition. The tool computes wet oxidized N deposition based
+only on WRF rainfall, and other N deposition variables are assumed to be zero.
+
+
-
+Zero: this option assumes that there is no atmospheric N.
+
+
·
+CMAQ Deposition Directory – used to set the directory
+containing the CMAQ dry and wet deposition output files for the simulation year
+if “CMAQ deposition directory” was chosen in the previous field. The dry and
+wet deposition file names must contain the string “DRYDEP” or “WETDEP”. In
+addition, the deposition file names must end with “*{DATE}” in the format that
+is described for the MCIP files above (e.g., an MCIP file can be named as METCRO2D_20030416
+and the deposition files can be named CCTM_M2f_v14soa_v3.4beta3_2003.DRYDEP.20030416
+and CCTM_M2f_v14soa_v3.4beta3_2003.WETDEP1.20030416).
+
+
After Run has
+been clicked and the queue job has finished, users should check the log file
+under their scenario’s scripts directory to see whether any errors
+occurred during execution. The tool generates the following three output files
+stored under scenarios/”scenario name”/share_data:
+
+
·
+dailyWETH/“GRIDID”.dly – daily weather and N
+files for each selected grid cell for EPIC modeling. “GRIDID” is the
+identification number for a selected grid cell (see Figure 7). Each daily file
+contains 14 formatted data items (listed in Table 3) to be used in the EPIC
+runs for the simulation year (same as the weather year). This daily weather
+file is duplicated for the year before the simulation year because we run the
+EPIC model for a two-year period using daily time steps.
+
+
·
+EPICW2YR.2YR – daily weather file list to be used in EPIC
+application modeling. It is defined in ${FESTC_HOME}/epic/common_data/EPIC_model/app/EPICFILE.DAT.
+
+
·
+site_weather_dep_${YEAR}0101_to_${YEAR}1231.nc – a single NetCDF
+file with daily time steps for the simulation year. It contains extracted
+daily weather and N deposition data for the all grid cells from the allSites_Info.csv
+file. Users can use the Visualization tool (discussed in Section 7) to
+display the values of a selected variable spatially.
+
+
+
+
Table 3. EPIC daily weather and nitrogen deposition
+variables.
Users must run EPIC spin-up
+simulations to generate initial soil files and annual plant N demand data,
+which are used in EPIC application-year simulations. Described in this section
+are the five EPIC spin-up run tools: EPIC Site File Generation, Soil
+Match for EPIC Spinup, Management File Generation for Spinup, View/Edit
+EPIC Inputs, and EPIC Runs for Spinup. Users can use these tools
+sequentially to generate files needed for the spin-up and launch the EPIC
+spinup run. Users can obtain detailed information on the EPIC databases from
+the documentation for the EPIC modeling system for CMAQ, and on the file
+formats and parameter descriptions from the EPIC model documentation at the Texas
+A&M AgriLife Research (http://epicapex.tamu.edu/files/
+2013/02/epic0509usermanualupdated.pdf).
The EPIC Site
+File Generation tool uses the FORTRAN programs stored under ${FESTC_HOME}/epic/util/siteCreate.
+This tool generates EPIC site files for the selected grid cells with the
+minimum crop acreage limit criterion. It also creates 21 crop directories with
+a crop site list file that is to be used in the other tools. As simulations
+are performed, irrigated and rainfed results are maintained as separate
+subdirectories under the overall crop directory. Figure 11 displays the tool
+interface for the test_case scenario with the Minimum Crop Acres set
+to 40. Users should use the same Minimum Crop Acres set in the Crop
+Site Info Generation tool.
+
+
+
+
Figure
+11. The EPIC Site File Generation interface for the test_case
+scenario.
+
+
After the queue job run has finished,
+users should check the log file under their scenario’s scripts directory
+to see whether any errors occurred during execution. The tool generates the
+following files and directories:
+
+
·
+“scenario name”/share_data/SIT/“GRIDID”0.SIT – EPIC site
+files to be used for all EPIC crop modeling. A description of the file format
+can be obtained from the EPIC model documentation.
+
+
·
+“scenario name”/share_data/SITELIST.DAT – EPIC site list
+file for all crops to be used in EPIC modeling.
+
+
·
+“scenario name”/“crop name”/“crop name”-LIST.DAT – EPIC
+site list for the particular crop, to be used in the Soil Match for EPIC
+Spinup tool discussed in the following section. If there are no grid cells
+that contain that crop, this file will be empty.
The Soil Match
+for EPIC Spinup tool selects a soil for each crop within a grid cell and
+creates the EPIC soil input file. The EPIC soil datasets are built to
+represent the sample point soils selected for USDA NRI data points at the HUC-8
+spatial scale. This tool links built EPIC soil datasets contained in the BaumerSoils
+subdirectory to the soil series from the USDA NRI for the crop and grid cell. It
+uses the FORTRAN programs stored under ${FESTC_HOME}/epic/util /soilMatch
+with the common data files stored under ${FESTC_HOME}/epic/common_data/ util/soilMatch
+and the generated soil list data under each crop directory. Figure 12 shows
+the tool interface used to match soils for all crops (as explained at the
+beginning of Section 5) for the current version of FEST-C. After selecting the
+crops, users click the Run button to run the tool in the queue. After the job
+has finished, users should check the queue job and log file in the “scenario
+name”/scripts directory, based on the information provided in the Message
+Box (shown in Figure 12).
+
+
+
+
The tool generates many output
+files under each crop directory, but most of them are intermediate files. The
+final data file created for the EPIC spin-up simulation is “scenario name”/
+“crop name”/SOILLIST.DAT, which contains the matched BaumerSoils
+soil file with other parameters for each grid cell under each crop directory.
+This step can take substantial time to complete.
+
+
+
+
Figure
+12. The Soil Match for EPIC Spinup tool interface used for the test_case
+scenario.
+Users can select single or multiple crops for the current FEST-C version.
The Management
+File Generation for Spinup tool interface is used to create the EPIC management
+for each crop within a grid cell. The EPICRUN file that has the linkages for
+the grid cell, statistical weather and wind files, soil files, and management
+files is also created for the rain-fed and irrigated forms of the crop. This
+tool uses the FORTRAN programs ManGenSU.exe and soildrain.exe stored under ${FESTC_HOME}/epic/util/manageCreate
+with the common data files stored under ${FESTC_HOME}/epic/common_data/util/manageCreate
+and many other data files generated under each crop directory. Figure 13 shows
+the tool interface used to generate management files for the test_case
+scenario.
+
+
+
+
Figure
+13. The Management File Generation for Spinup tool used for the test_case
+scenario.
+
+
Users need to make sure that the
+following two fields are selected correctly:
+
+
·
+Fertilizer Year – select either 2001 or 2006 for choosing the
+correct common data sets stored under ${FESTC_HOME}/epic/common_data/util/manageCreate.
+ 2011 fertilizer year will be available in future releases. NLCD/MODIS
+2011 is available in this release and can be used (e.g. changes in crop
+fraction) with the 2006 fertilizer year but changes to fertilizer types for
+2011 will not be realized in these simulations.
+
+
·
+Selected Crops – select one crop or multiple crops.
+
+
After the user clicks the Run
+button and then “OK”, a queue job to generate management files for each
+selected crop is submitted. After the job has finished, users should check the
+queue job and log file in the “scenario name”/scripts directory, based
+on the information provided in the Message Box (shown in Figure 13).
+
+
+
+
There are many output files
+generated under each crop, but many of these are used just for verification.
+The tool generates the following files to be used for the EPIC spin-up
+simulations under the directory “scenario name”/“crop name”/spinup/manage for
+each crop:
+
+
·
+EPICRUNFILERAIN.DAT – EPIC run file for rain-fed spin-up
+simulation of this crop.
+
+
·
+EPICRUNFILEIRR.DAT – EPIC run file for irrigated spin-up
+simulation of this crop.
+
+
·
+GRIDS_OPC.DAT – the list of management file names to be used in
+EPIC modeling.
+
+
·
+OPC/“GRIDID”0“BELD3 Crop Number”.OPC – grid cell EPIC
+management files under the OPC directory. Table 1 in Section 4.1 lists
+the crop numbers in the BELD data and how they are mapped, Table 2.
+
+
·
+tileDrain/SOILLIST.DAT – soil list file which contains
+tile drain information for EPIC simulations and is used when “tileDrain” is
+selected when running EPIC spinup simulations.
The View/Edit
+EPIC Inputs interface allows users to view or edit five main EPIC
+simulation files (listed in Figure 14). Users generally do not need to edit these
+files, but viewing them can be helpful for debugging. The user has to select a
+crop first and then select the EPIC simulation type. The simulation type can
+be SPINUP if the Management File Generation for Spinup tool (previous
+section) has been executed for the selected crop; or the user can select the
+simulation type APP after the Management File Generation for Application
+tool (discussed in Section 6.1) has been executed for the crop. Figure 14 shows
+the View/Edit EPIC Inputs tool interface for the test_case
+scenario.
+
+
+
+
Figure
+14. The View/Edit EPIC Inputs tool for the test_case
+scenario.
The EPIC Runs
+for Spinup tool interface is used to run the EPIC model for spin-up (EPICsu.exe
+program), which is stored under the directory ${FESTC_HOME}/epic/model/current.
+The tool uses input files stored primarily in the following directories:
+
+
·
+${FESTC_HOME}/epic/common_data/EPIC_model/spinup – contains
+the common model input files.
+
+
·
+scenarios/“scenario name”/share_data – contains site files
+and list file.
+
+
·
+${FESTC_HOME}/epic/common_data/statWeath – contains
+observed climate station statistical data (see http://epicapex.tamu.edu/epic/)
+
+
·
+scenarios/“scenario name”/“crop name”/spinup/manage – contains
+the run files, management files, and management list file.
Spin-up
+simulations generate EPIC soil files reflecting the user-defined management to be
+used as initial conditions in the application run for the simulation year. Soil
+erosion (wind and water) is “turned off” during the spin-up period to avoid
+loss of productive soil layers. These losses are “turned on” during
+application year simulation. As discussed in Section 2, the spin-up simulation
+is run for 25 years starting from 1978 for all crops except potatoes; for potatoes
+it is run for 100 years starting from 1903. These dates are strictly used for
+“bookkeeping” and are not used in subsequent steps. Statistically generated
+weather conditions for Cooperative Observer Weather Stations during the period
+1980-2010 drive these simulations. Future releases are expected to support
+input of alternative sources of long-term weather information (i.e., 25 years
+or more). Figure 15 displays the tool interface used for the test_case
+scenario. Users can select one or more crops for the simulation. After
+clicking the Run button, a script file is generated to run the rain-fed and
+irrigated EPIC spin-up simulations for each crop. The user submits the script
+file to the queue by clicking OK. After the job has finished, users should
+check the queue job and log file in the “scenario name”/scripts directory,
+based on the information provided in the Message Box (shown in Figure 15).
+
+
+
+
Figure 15. The EPIC
+Runs for Spinup tool used for the test_case scenario.
+
+
Users need to make sure that the
+following three fields are selected correctly:
+
+
·
+CO2 Level (ppm) - input the correct CO2
+level for the simulation (e.g. 380). The input level overwrites the CO2
+level defined in EPICCONT.DAT and site file.
+
+
·
+Daily Average N Deposition – select N input to be used in
+the simulation. Users can select using 1) the values defined in EPIC input files,
+2) daily average N input from 5-year CMAQ simulations from 2002 to 2006, or 3) daily
+average N input from 5-year CMAQ simulations from 2006 to 2010. The 5-year
+CMAQ N daily input files are stored under ${FESTC_HOME}/epic/common_data/EPIC_model.
+Future releases will include daily average N input from 5-year CMAQ simulations
+from 2011 to 2015.
+
+
·
+Run TileDrain – select whether tile drain is applied for
+saturated soils. If YES is selected, SOILLIST file under scenarios/“scenario
+name”/“crop name”/spinup/manage/tileDrain will be used. The tile drain
+process is applied for all crops except hay (1, 2), alfalfa (3, 4), Other_Grass
+(5, 6) and rice (23, 24).
+
+
The tool generates many directories
+and files for each crop. The original EPIC output files are stored under the
+two following subdirectories in the “scenario name”/“crop name”/spinup directory:
+
+
·
+rainf – contains output from EPIC rain-fed spin-up
+simulations for this crop.
+
+
·
+irr – contains output from EPIC irrigated spin-up
+simulations for this crop.
+
+
In both cases,
+soil files to be used in the EPIC application simulation are:
+
+
-
+SOL/“GRIDID”0“BELD3 Crop Number”.SOL
+
+
The output data created for CMAQ
+modeling are used primarily for QA purposes, and are stored under the following
+two directories in the “scenario name”/output4CMAQ/spinup directory:
+
+
·
+5years – contains average EPIC output data from the last
+five years of the spin-up simulations for the crops.
+
+
·
+daily – stores daily EPIC output data from EPIC spin-up
+runs for the crops simulated.
After users
+complete the EPIC simulations for spin-up, they can proceed to the EPIC
+application run tools for the simulation (or application) year. The spin-up
+simulations need to be run only once for a given domain and grid resolution—in other
+words, the initial conditions can be re-used for multiple application years.
+The first step in running an EPIC application is to generate management files
+for the application year (as described in Section 6.1). The application
+management program needs to be run only once for a given domain and grid
+resolution; it is not year-specific. The user can then run the EPIC model for
+the application year (as described in Section 6.2) if the daily weather and N
+deposition files for the scenario have already been generated using the tool described
+in Section 4.3.
The Management
+File Generation for Application tool interface is used to create (1) the
+EPIC management files for each crop to be used in the EPIC application-year
+modeling; and (2) the EPICRUN file for the rain-fed and irrigated simulations,
+which contains the linkages for the statistical weather and wind files, the
+soil files, and the management files for EPIC grid cells. The tool uses the
+FORTRAN programs ManGenFERT.exe and soildrain.exe stored under the ${FESTC_HOME}/
+epic/util/manageCreate directory with the common data files stored under ${FESTC_HOME}
+/epic/common_data/util/manageCreate and many other data files generated
+under each crop directory. Figure 16 shows the tool interface used to generate
+management files for the test_case scenario. Users must make sure that
+the following two entries are selected correctly:
+
+
·
+Fertilizer Year – select 2001 or 2006. The common
+management and fertilizer data sets created under the ${FESTC_HOME}/epic/common_data/util/manageCreate
+will be usedaccordingly. This management tool uses the created
+fertilizer data types for the 10 crop production regions. Fertilizer for 2011
+will be available in a future release.
+
+
·
+Selected Crops – select one or more crops.
+
+
+
+
+
+
Figure 16. The Management
+File Generation for Application tool interface used
+for the test_case scenario.
+
+
After clicking the Run button, a
+script file is generated to compute the management files for the selected
+crops. The user submits the script file to the queue by clicking OK. After
+the job has finished, users should check the queue job and log file in the “scenario
+name”/scripts directory, based on the information provided in the Message
+Box (shown in Figure 16).
+
+
+
+
The tool will generate many output
+files under each crop (many of these are used just for verification). The tool
+generates the following files under the “scenario name”/“crop name”/app/manage
+directory:
+
+
·
+EPICRUNFILERAINDW.DAT – EPIC run file for rain-fed application
+simulation.
+
+
·
+EPICRUNFILEIRRDW.DAT – EPIC run file for irrigated application
+simulation.
+
+
·
+GRIDS_OPC.DAT – the list of management file names to be used in
+EPIC modeling.
+
+
·
+OPC/“GRIDID”0“BELD3 Crop Number”.OPC – grid cell EPIC
+management files under the OPC directory. Table 1 in Section 4.1 lists
+the crop numbers in the BELD data.
+
+
·
+tileDrain/SOILLIST.DAT – soil list file which contains
+tile drain information for EPIC simulations and is used when “tileDrain” is
+selected when running EPIC application simulations.
The EPIC Runs
+for Application tool interface is used to run the EPIC model for the
+simulation year (EPICapp.exe program), which is stored under the directory ${FESTC_HOME}/epic/
+model/current. Users must already have generated the site daily weather
+and N deposition files using the WRF/CMAQ-to-EPIC tool interface (see
+Section 4.3). N deposition input can be selected from the four available
+options – CMAQ, EPIC parameter input file, 2002-2006 5-year CMAQ average,
+and 2006-2010 5-year CMAQ average. Thetool uses input files stored primarily
+in the following directories:
+
+
·
+${FESTC_HOME}/epic/common_data/EPIC_model/app – contains
+the common model input files.
+
+
·
+scenarios/“scenario name”/share_data – contains the EPICCONT.DAT
+file, site files, site list file, daily weather and N deposition files, and
+weather list file.
+
+
·
+ ${FESTC_HOME}/epic/common_data/statWeath – contains observed
+climate station statistical data.
+
+
·
+scenarios/“scenario name”/ “crop name” /app/manage – contains
+the run files, management files, and management list file.
+
+
·
+scenarios/“scenario name”/ “crop name”/spinup/rainf/SOL – contains
+the soil files to be used in the rain-fed simulations.
+
+
·
+scenarios/“scenario name”/ “crop name”/spinup/irr/SOL – contains
+the soil files to be used in the irrigated simulations.
+
+
Figure 17 shows
+the tool interface used for the test_case scenario. The Simulation Year
+is defined when the user creates the scenario. Users can select one or
+multiple crops for the simulation. After clicking the Run button, a script
+file is generated to run the rain-fed and irrigated EPIC application
+simulations for each crop. The EPIC application simulations will run for a two-year
+period (the previous year and the simulation year) using the same daily weather
+and N deposition files for the simulation year; the two-year period is needed to
+simulate a full growing season for fall-sown crops. The user submits the script
+file to the queue by clicking OK. After the job has finished, users should
+check the queue job and log file in the “scenario name”/scripts directory,
+based on the information provided in the Message Box (shown in Figure 17).
+
+
Users need to
+make sure that the following three fields are selected correctly:
+
+
·
+CO2 Level (ppm) - input the correct CO2
+level for the simulation (e.g. 380). The input level overwrites the CO2
+level defined in EPICCONT.DAT and site file.
+
+
·
+Daily Average N Deposition – select N input to be used in
+the simulation. Users can select using 1) the CMAQ N values in daily weather
+files, 2) values defined in EPIC input files, 3) daily average N input from the
+5-year CMAQ simulations from 2002 to 2006, or 4) daily average N input from the
+5-year CMAQ simulations from 2006 to 2010. The 5-year CMAQ N daily input files
+are stored under ${FESTC_HOME}/epic/common_data/EPIC_model. Future
+releases will include daily average N input from 5-year CMAQ simulations from
+2011 to 2015.
+
+
·
+Run TileDrain – select whether tile drain is applied for
+saturated soils. If YES is selected, SOILLIST file under scenarios/“scenario
+name”/“crop name”/app/manage/tileDrain will be used. The tile drain
+process is applied for all crops except hay (1, 2), alfalfa (3, 4), Other_Grass
+(5, 6) and rice (23, 24).
+
+
+
+
+
+
Figure 17. The EPIC
+Runs for Application tool interface used for the test_case scenario.
+
+
The tool generates many directories
+and files for each crop. The original EPIC output files are stored under the
+following two subdirectories in the “scenario name”/“crop name”/app directory:
+
+
·
+rainf – contains output from EPIC rain-fed application
+simulations for this crop.
+
+
·
+irr – contains output from EPIC irrigated application
+simulations for this crop.
+
+
The output data created for CMAQ
+modeling are stored under the following two subdirectories in the “scenario
+name”/output4CMAQ/app directory:
+
+
·
+year – contains average EPIC output data for the
+simulation year (one year) run for the crops simulated. These data are used
+primarily for QA purposes.
+
+
·
+daily – stores daily EPIC output data from EPIC
+application runs for the crops simulated. These data are used to extract the
+input for CMAQ bidirectional NH3 modeling and SWAT simulations.
EPIC is a field-based
+model that generates output in formatted text files. In the domain-based EPIC
+modeling within FEST-C, the crops in each grid cell are modeled individually.
+Thus, there are many text output files generated for each crop in each grid
+cell selected for EPIC modeling. In this section we first describe the EPIC
+Yearly Extraction tool and the EPIC-to-CMAQ tool. Developed in the
+SA Raster Tools system, these two tools extract yearly or daily EPIC output
+variables into NetCDF-format files for QA purposes and for CMAQ modeling. We
+then discuss the EPIC to SWAT tool which prepares SWAT input files from
+EPIC output and WRF/CMAQ weather and N deposition NetCDF file using many R
+codes. The Visualization tool interface, which allows users to prepare
+spatial views of the EPIC output variables in the created NetCDF files over
+their modeling scenario domain, is presented last in this section.
The EPIC
+Yearly Extraction tool is used to extract 48 crop-specific variables and 39
+crop-area-weighted variables into two NetCDF files from the yearly average EPIC
+output files for all simulated crops within the grid cells that were selected.
+The output from this tool is used primarily for QA purposes, to make sure that the
+EPIC simulation results appear to be spatially reasonable over the domain
+area. Figure 18 shows the tool interface used for the test_case
+scenario. The only item users need to select is an “Output Type”:
+
+
·
+EPIC SPINUP – select this to extract yearly average
+variables from the EPIC spin-up simulations. Yearly average variables from the
+last five years of the simulations are from the output stored under the “scenario
+name”/output4CMAQ/spinup/5years directory.
+
+
·
+EPIC APP – select this to extract yearly average variables
+from the EPIC simulations for the application year. The yearly average
+variables are from the output stored under the “scenario
+name”/output4CMAQ/app/year directory.
+
+
+
+
+
+
Figure 18. The EPIC
+Yearly Extraction tool interface used for the test_case scenario.
+
+
Table 4 lists all variables that
+are in the two EPIC output files created by the tool: epic2cmaq_year.nc
+(crop-specific output) and epic2cmaq_year_total.nc (crop-weighted output).
+These files are stored in one of the following two directories:
+
+
·
+scenarios/“scenario name”/output4CMAQ/spinup/toCMAQ – if
+the EPIC SPINUP output type is selected.
+
+
·
+scenarios/“scenario name”/output4CMAQ/app/toCMAQ – if the
+EPIC APP output type is selected.
+
+
+
+
Users should check the log file
+under their scenario’s scripts directory to see whether any errors
+occurred when the tool was run. If the user is visualizing the data using the
+VERDI tool for visualization, there is no time dimension. Data layers are assigned
+to individual crops (see Table 1 in Section 4.1 for the BELD crop numbers).
The EPIC to CMAQ
+tool is used to extract 13 variables from EPIC soil output files and 41
+variables from EPIC daily output files into NetCDF files for all simulated
+crops within the grid cells that were selected. The output from this tool is
+used as input to CMAQ bidirectional NH3 modeling over the domain
+area. Figure 19 shows the tool interface used for the test_case
+scenario.
+
+
The user needs to
+input the following two items:
+
+
·
+Output File Prefix – this is used as the file prefix for
+all of the NetCDF output file names
+
+
·
+Output Type – select “EPIC SPINUP” to extract
+yearly average variables from the EPIC spin-up simulations under the “scenario
+name”/output4CMAQ/spinup/5years directory and “EPIC APP” to extract
+yearly average variables from the EPIC simulations for the application year
+under the “scenario name”/output4CMAQ/app/year directory.
+
+
The following output files produced
+by the tool are stored under the scenarios/“scenario
+name”/output4CMAQ/app/toCMAQ directory:
+
+
·
+“Output File Prefix”_soil.nc – soil output file that
+contains 13 soil variables extracted from the EPIC soil output files (“scenario
+name”/output4CMAQ /app/daily/“BELD4 Crop Number”.NCS); these variables are
+listed in Table 5. L1 and L2 are for the soil depth from 0 to 1 cm and from 1 cm
+to 10 cm, respectively.
+
+
·
+“Output File Prefix”_timeYYYYMMDD.nc – daily NetCDF files
+for the simulation year. A daily NetCDF file contains 41 variables extracted
+from the EPIC daily output files (e.g. “scenario name”/output4CMAQ
+/app/daily/“BELD4 Crop Number”.NCD”); these variables are listed in Table 6.
+L1, L2, and T1 are for the soil depth from 0 to 1 cm, from 1 cm to 10 cm,
+and from 0 cm to the full Baumer soil profile depth, which can be more than
+1 m.
+
+
+
+
+
+
Figure
+19. The EPIC to CMAQ tool interface used for the test_case
+scenario.
+
+
+
+
Table 5. EPIC to CMAQ soil output variables
+
+
+
+
+
+
+
Index
+
+
+
Name
+
+
+
Soil
+ Variable
+
+
+
Index
+
+
+
Name
+
+
+
Soil
+ Variable
+
+
+
+
+
1
+
+
+
L1_SoilNum
+
+
+
Soil Number (none)
+
+
+
8
+
+
+
L2_Bulk_D
+
+
+
Layer2 Bulk Density (t/m**3)
+
+
+
+
+
2
+
+
+
L1_Bulk_D
+
+
+
Layer1 Bulk Density (t/m**3)
+
+
+
9
+
+
+
L2_Wilt_P
+
+
+
Layer2 Wilting Point (m/m)
+
+
+
+
+
3
+
+
+
L1_Wilt_P
+
+
+
Layer1 Wilting Point(m/m)
+
+
+
10
+
+
+
L2_Field_C
+
+
+
Layer2 Field Capacity (m/m)
+
+
+
+
+
4
+
+
+
L1_Field_C
+
+
+
Layer1 Field Capacity (m/m)
+
+
+
11
+
+
+
L2_Porosity
+
+
+
Layer2 Porosity (%)
+
+
+
+
+
5
+
+
+
L1_Porosity
+
+
+
Layer1 Porosity (%)
+
+
+
12
+
+
+
L2_PH
+
+
+
Layer2 PH (none)
+
+
+
+
+
6
+
+
+
L1_PH
+
+
+
Layer1 PH (none)
+
+
+
13
+
+
+
L2_Cation
+
+
+
Layer2 Cation Ex (cmol/kg)
+
+
+
+
+
7
+
+
+
L1_Cation
+
+
+
Layer1 Cation Ex (cmol/kg)
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Table 6. EPIC to CMAQ daily output variables
+
+
+
+
+
+
+
Index
+
+
+
Name
+
+
+
Variable
+
+
+
Index
+
+
+
Name
+
+
+
Variable
+
+
+
+
+
1
+
+
+
DN
+
+
+
N-NO3 Denitrification (kg/ha)
+
+
+
22
+
+
+
L2_NH3
+
+
+
Layer2 N - Ammonia (kg/ha)
+
+
+
+
+
2
+
+
+
DN2
+
+
+
N-N2O from NO3 Denitrification
+ (kg/ha)
+
+
+
23
+
+
+
L2_ON
+
+
+
Layer2 Organic N (kg/ha)
+
+
+
+
+
3
+
+
+
HMN
+
+
+
OC Change by Soil Respiration
+ (kg/ha)
+
+
+
24
+
+
+
L2_C
+
+
+
Layer2 Carbon (kg/ha)
+
+
+
+
+
4
+
+
+
NFIX
+
+
+
N Fixation (kg/ha)
+
+
+
25
+
+
+
L2_NITR
+
+
+
Layer2 N - Nitrified NH3
+ (kg/ha)
+
+
+
+
+
5
+
+
+
GMN
+
+
+
N Mineralized (kg/ha)
+
+
+
26
+
+
+
T1_DEP
+
+
+
Layert Depth (m)
+
+
+
+
+
6
+
+
+
YW
+
+
+
Wind Erosion (ton/ha)
+
+
+
27
+
+
+
T1_BD
+
+
+
Layert Bulk Density (t/m**3)
+
+
+
+
+
7
+
+
+
FPO
+
+
+
Organic P Fertilizer (kg/ha)
+
+
+
28
+
+
+
T1_NO3
+
+
+
Layert N - Nitrate (kg/ha)
+
+
+
+
+
8
+
+
+
FPL
+
+
+
Labile P Fertilizer (kg/ha)
+
+
+
29
+
+
+
T1_NH3
+
+
+
Layert N - Ammonia (kg/ha)
+
+
+
+
+
9
+
+
+
MNP
+
+
+
P Mineralized (kg/ha)
+
+
+
30
+
+
+
T1_ON
+
+
+
Layert Organic N (kg/ha)
+
+
+
+
+
10
+
+
+
L1_DEP
+
+
+
Layer1 Depth (m)
+
+
+
31
+
+
+
T1_C
+
+
+
Layert Carbon (kg/ha)
+
+
+
+
+
11
+
+
+
L1_BD
+
+
+
Layer1 Bulk Density (t/m**3)
+
+
+
32
+
+
+
T1_NITR
+
+
+
Layert N - Nitrified NH3
+ (kg/ha)
+
+
+
+
+
12
+
+
+
L1_SW
+
+
+
Layer 1 Soil Moisture (mm)
+
+
+
33
+
+
+
L1_ANO3
+
+
+
Layer1 N-NO3 AppRate (kg/ha)
+
+
+
+
+
13
+
+
+
L1_NO3
+
+
+
Layer1 N - Nitrate (kg/ha)
+
+
+
34
+
+
+
L1_ANH3
+
+
+
Layer1 N-NH3 AppRate (kg/ha)
+
+
+
+
+
14
+
+
+
L1_NH3
+
+
+
Layer1 N - Ammonia (kg/ha)
+
+
+
35
+
+
+
L1_AON
+
+
+
Layer1 ON AppRate (kg/ha)
+
+
+
+
+
15
+
+
+
L1_ON
+
+
+
Layer1 Organic N (kg/ha)
+
+
+
36
+
+
+
L2_ANO3
+
+
+
Layer2 N-NO3 AppRate (kg/ha)
+
+
+
+
+
16
+
+
+
L1_C
+
+
+
Layer1 Carbon (kg/ha)
+
+
+
37
+
+
+
L2_ANH3
+
+
+
Layer2 N-NH3 AppRate (kg/ha)
+
+
+
+
+
17
+
+
+
L1_NITR
+
+
+
Layer1 N - Nitrified NH3
+ (kg/ha)
+
+
+
38
+
+
+
L2_AON
+
+
+
Layer2 ON AppRate (kg/ha)
+
+
+
+
+
18
+
+
+
L2_DEP
+
+
+
Layer2 Depth (m)
+
+
+
39
+
+
+
LAI
+
+
+
Leaf Area Index (none)
+
+
+
+
+
19
+
+
+
L2_BD
+
+
+
Layer2 Bulk Density (t/m**3)
+
+
+
40
+
+
+
CPHT
+
+
+
Crop Height (m)
+
+
+
+
+
20
+
+
+
L2_SW
+
+
+
Layer 2 Soil Moisture (mm)
+
+
+
41
+
+
+
FBARE
+
+
+
Bare Land Fraction for Wind
+ Erosion (Fraction)
+
+
+
+
+
21
+
+
+
L2_NO3
+
+
+
Layer2 N - Nitrate (kg/ha)
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Note:
+ EPIC is a daily time step model while the CMAQ bidirectional NH3
+ flux model is at a time scale which could be less than 10 minutes.
+
+
+
+
+
+
+
+
+
When the user clicks the Run
+button, a script file is generated under the scenario’s scripts directory.
+The script file is submitted to the queue for execution after the user clicks
+OK. A CMAQ-ready file is generated for each day and is viewable in VERDI. After
+the queue job has completed, users should check the log file under the scripts
+directory to see whether any errors occurred during execution.
The EPIC to SWAT tool is used
+to extract EPIC output and WRF/CMAQ weather and N deposition data for SWAT
+simulations in 8-digit HUC watersheds defined by users. “EPIC”, “NDEP”, and “DailyWETH”
+are tools which users can click in any order to aggregate EPIC daily output and
+N deposition and weather data in CMAQ grid format into the different areas listed.
+After aggregated EPIC, N deposition, and weather files are created, users can
+click “SWAT INPUTS” to generate SWAT-ready input files. The output from
+“SWAT INPUTS” can be used by SWAT modelers to replace default or “traditional”
+SWAT weather, atmospheric deposition and agricultural land nutrient and runoff input.
+ Figure 20 shows the tool interface which is used for the test_case
+scenario. Users need to make sure that the following fields are filled and selected
+correctly:
+
+
·
+HUC8 Delivery Ratio File – EPIC to SWAT integration file.
+This text file contains SWAT 8-digit HUC watershed information with average
+delivery ratios from EPIC edge-of-field output to SWAT watershed output. Users
+can view the delivery ratio file – “test_case/share_data/subbasins-mapping_test_case.csv”
+included for the test_case scenario for items and format required.
+
+
·
+Daily Average N Deposition – select the source of N
+deposition for SWAT extraction. Users can select CMAQ application year N
+deposition or one of the 5-year average CMAQ N deposition.
+
+
·
+Area Selection – select area for generating SWAT-ready
+input files by the “SWAT INPUTS” button. The current system only works for
+8-digit HUC SWAT input file generation regardless of which area is selected.
+The “EPIC”, “NDEP”, and DailyWETH” extraction buttons will generate aggregated
+data for all areas listed.
+
+
+
+
+
+
Figure 20. The
+EPIC to SWAT interface.
+
+
The button tools with descriptions
+in this subinterface are:
Table 7. Conversion of EPIC
+daily output to SWAT point source input
+
+
+
+
+
+
Notes: Area is for the crop area in a specific
+grid. ∑ is the summation for all grids
+in a region (e.g. HUC8).
+
+
+
+
+
+
·
+NDEP - aggregate daily N deposition variables required by
+SWAT (Table 8) from daily deposition NetCDF file generated from CMAQ to all
+areas listed on the interface (Domain, State, County, HUC8, HUC6, and HUC2). This
+tool uses the R program epic2swat_extract_daily_ndepCMAQ.R stored under ${FESTC_HOME}/epic/util/swat.
+After clicking the NDEP button, a script file is generated to run the program
+using all information defined by environment variables. The user submits the
+script file to the queue by clicking OK. After the job is finished, users
+should check the queue job and log file in the “scenario name”/scripts
+directory, based on the information provided in the Message Box (shown in
+Figure 20). The output files from the tool are stored under the sub-directories
+with corresponding area names in the “scenario name”/output4SWAT/NDEP directory.
+
+
+
+
+
+
+
+
+
+
Table 8. CMAQ N Deposition
+to SWAT
+
+
+
+
+
+
Note: N is the total
+number of grid cells in a specific region (e.g. HUC8).
+
+
+
+
·
+DailyWETH -aggregate
+daily weather variables required by SWAT (Table 9) from daily weather NetCDF
+file generated from WRF to all areas listed on the interface (Domain, State,
+County, HUC8, HUC6, and HUC2). This tool uses the R program epic2swat_extract_daily_metCMAQ.R
+stored under ${FESTC_HOME}/epic/util/swat. After clicking the DailyWETH
+button, a script file is generated to run the program using all information
+defined by environment variables. The user submits the script file to the
+queue by clicking OK. After the job is finished, users should check the queue
+job and log file in the “scenario name”/scripts directory, based on the
+information provided in the Message Box (shown in Figure 20). The output files
+from the tool are stored under the sub-directories with corresponding area
+names in the “scenario name”/output4SWAT/dailyWETH directory.
+
+
+
+
+
+
+
+
+
Table 9. WRF daily weather to
+SWAT
+
+
+
+
+
+
Note: N is the total
+number of grid cells in a specific region (e.g. HUC8).
+
+
+
+
+
+
·
+SWAT INPUTS– generate SWAT-ready input files from aggregated
+daily EPIC, weather, and N deposition files by the previous three button tools
+for the watersheds specified in the “HUC8 Delivery Ratio File” field. This
+tool calls the R program extract_swatInputs.R stored under ${FESTC_HOME}/epic/util/swat.
+After clicking the “SWAT INPUTS” button, a script file is generated to run the program
+using all information defined by environment variables. The user submits the
+script file to the queue by clicking OK. After the job is finished, users
+should check the queue job and log file in the “scenario name”/scripts
+directory, based on the information provided in the Message Box (shown in
+Figure 20). The output files from the tool are stored under the
+sub-directories for EPIC, weather, and N deposition individually in the “scenario
+name”/output4SWAT/swat_inputs directory.
The Visualization
+tool interface is used to invoke the VERDI interface to view a selected NetCDF
+data set. Figure 21 shows the appearance of the tool interface before an input
+file has been selected. Users can select the data type on the left side of the
+interface window and then by browse through the file systems to select a NetCDF
+file created or used within the FEST-C system (e.g., an EPIC output NetCDF file
+created by the previous two tools, a BELD4 data set, MCIP and CMAQ data sets, a
+daily weather and N deposition NetCDF output file). Clicking the Display button
+invokes the VERDI interface to visualize the selected NetCDF file. Note:
+For this to work properly, the user has to have set the VERDI system in the
+FEST-C configuration file config.properties (see Section 1.3).
+Information on how to use the VERDI system can be obtained from the CMAS VERDI
+site: http://www.cmascenter.org/verdi/.
+
In this release,
+2011 NLCD/MODIS data is available to produce crop fractions for Canada and the
+US. To accompany this data, a future release will include an updated
+fertilizer type scenario for 2011. In addition, we will continue to improve
+the crop fraction coverage with the upcoming NLCD 2016 release using the USDA
+2017 census data and corresponding crop census data for Canada and Mexico. We
+are continuing our efforts to improve the C-N-P budgets within this systems for
+different crops. We are also exploring the possibility of moving to computing
+crop land use data directly from USDA National Agricultural Statistics Service (NASS)
+Cropland Data Layer (CDL) data. This would provide higher-resolution crop
+spatial information, however, CDL data do not include some information that is
+critical for FEST-C EPIC (such as differentiation between irrigated and
+rain-fed crops). Thus, further exploration on using this data set in
+combination with other irrigation data is needed.
+
+
+
+
diff --git a/festc_bootstrap/help/userManual_files/props056.xml b/festc_bootstrap/help/userManual_files/props056.xml
index c9b8bb6..8196ca7 100644
--- a/festc_bootstrap/help/userManual_files/props056.xml
+++ b/festc_bootstrap/help/userManual_files/props056.xml
@@ -1,2 +1,2 @@
-
+
\ No newline at end of file
diff --git a/festc_bootstrap/lib/c2dm.jar b/festc_bootstrap/lib/c2dm.jar
new file mode 100644
index 0000000..1075f51
Binary files /dev/null and b/festc_bootstrap/lib/c2dm.jar differ
diff --git a/festc_bootstrap/lib/jaxb-api-2.3.0.jar b/festc_bootstrap/lib/jaxb-api-2.3.0.jar
new file mode 100644
index 0000000..0817c08
Binary files /dev/null and b/festc_bootstrap/lib/jaxb-api-2.3.0.jar differ
diff --git a/festc_bootstrap/lib/jgoodies.jar b/festc_bootstrap/lib/jgoodies.jar
new file mode 100644
index 0000000..5cc43a7
Binary files /dev/null and b/festc_bootstrap/lib/jgoodies.jar differ
diff --git a/festc_bootstrap/lib/log4j-1.2-api-2.0-rc1.jar b/festc_bootstrap/lib/log4j-1.2-api-2.0-rc1.jar
deleted file mode 100644
index 5353055..0000000
Binary files a/festc_bootstrap/lib/log4j-1.2-api-2.0-rc1.jar and /dev/null differ
diff --git a/festc_bootstrap/lib/log4j-1.2-api-2.22.1.jar b/festc_bootstrap/lib/log4j-1.2-api-2.22.1.jar
new file mode 100644
index 0000000..de57f34
Binary files /dev/null and b/festc_bootstrap/lib/log4j-1.2-api-2.22.1.jar differ
diff --git a/festc_bootstrap/lib/log4j-api-2.0-rc1.jar b/festc_bootstrap/lib/log4j-api-2.0-rc1.jar
deleted file mode 100644
index a8b9261..0000000
Binary files a/festc_bootstrap/lib/log4j-api-2.0-rc1.jar and /dev/null differ
diff --git a/festc_bootstrap/lib/log4j-api-2.22.1.jar b/festc_bootstrap/lib/log4j-api-2.22.1.jar
new file mode 100644
index 0000000..b77e55e
Binary files /dev/null and b/festc_bootstrap/lib/log4j-api-2.22.1.jar differ
diff --git a/festc_bootstrap/lib/log4j-core-2.0-rc1.jar b/festc_bootstrap/lib/log4j-core-2.0-rc1.jar
deleted file mode 100644
index 5a9f29a..0000000
Binary files a/festc_bootstrap/lib/log4j-core-2.0-rc1.jar and /dev/null differ
diff --git a/festc_bootstrap/lib/log4j-core-2.22.1.jar b/festc_bootstrap/lib/log4j-core-2.22.1.jar
new file mode 100644
index 0000000..0be3f1f
Binary files /dev/null and b/festc_bootstrap/lib/log4j-core-2.22.1.jar differ
diff --git a/festc_bootstrap/lib/plugin.xml b/festc_bootstrap/lib/plugin.xml
index 00e5a6c..0eff73e 100644
--- a/festc_bootstrap/lib/plugin.xml
+++ b/festc_bootstrap/lib/plugin.xml
@@ -1,15 +1,15 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/festc_bootstrap/src/gov/epa/festc/boot/FestcClassLoader.java b/festc_bootstrap/src/gov/epa/festc/boot/FestcClassLoader.java
index 132d97d..20621c2 100644
--- a/festc_bootstrap/src/gov/epa/festc/boot/FestcClassLoader.java
+++ b/festc_bootstrap/src/gov/epa/festc/boot/FestcClassLoader.java
@@ -1,56 +1,56 @@
-package gov.epa.festc.boot;
-
-import java.security.AllPermission;
-import java.security.CodeSource;
-import java.security.PermissionCollection;
-import java.security.Permissions;
-
-import org.java.plugin.PluginManager;
-import org.java.plugin.registry.PluginDescriptor;
-import org.java.plugin.standard.StandardPluginClassLoader;
-
-/**
- * Classloader used by FEST-C. This extends jpf's StandardPluginClassLoader
- * but overrides getPermissions to return all permissions. This allows jpf to
- * work with webstart.
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-
-public class FestcClassLoader extends StandardPluginClassLoader {
-
- public FestcClassLoader(PluginManager pluginManager, PluginDescriptor pluginDescriptor, ClassLoader classLoader) {
- super(pluginManager, pluginDescriptor, classLoader);
- }
-
-
- /**
- * Returns the permissions for the given codesource object.
- * The implementation of this method first calls super.getPermissions
- * and then adds permissions based on the URL of the codesource.
- *
- * If the protocol of this URL is "jar", then the permission granted
- * is based on the permission that is required by the URL of the Jar
- * file.
- *
- * If the protocol is "file"
- * and the path specifies a file, then permission to read that
- * file is granted. If protocol is "file" and the path is
- * a directory, permission is granted to read all files
- * and (recursively) all files and subdirectories contained in
- * that directory.
- *
- * If the protocol is not "file", then
- * to connect to and accept connections from the URL's host is granted.
- *
- * @param codesource the codesource
- * @return the permissions granted to the codesource
- */
- @Override
- protected PermissionCollection getPermissions(CodeSource codesource) {
- Permissions permissions = new Permissions();
- permissions.add(new AllPermission());
- return permissions;
- }
-}
+package gov.epa.festc.boot;
+
+import java.security.AllPermission;
+import java.security.CodeSource;
+import java.security.PermissionCollection;
+import java.security.Permissions;
+
+import org.java.plugin.PluginManager;
+import org.java.plugin.registry.PluginDescriptor;
+import org.java.plugin.standard.StandardPluginClassLoader;
+
+/**
+ * Classloader used by FEST-C. This extends jpf's StandardPluginClassLoader
+ * but overrides getPermissions to return all permissions. This allows jpf to
+ * work with webstart.
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+
+public class FestcClassLoader extends StandardPluginClassLoader {
+
+ public FestcClassLoader(PluginManager pluginManager, PluginDescriptor pluginDescriptor, ClassLoader classLoader) {
+ super(pluginManager, pluginDescriptor, classLoader);
+ }
+
+
+ /**
+ * Returns the permissions for the given codesource object.
+ * The implementation of this method first calls super.getPermissions
+ * and then adds permissions based on the URL of the codesource.
+ *
+ * If the protocol of this URL is "jar", then the permission granted
+ * is based on the permission that is required by the URL of the Jar
+ * file.
+ *
+ * If the protocol is "file"
+ * and the path specifies a file, then permission to read that
+ * file is granted. If protocol is "file" and the path is
+ * a directory, permission is granted to read all files
+ * and (recursively) all files and subdirectories contained in
+ * that directory.
+ *
+ * If the protocol is not "file", then
+ * to connect to and accept connections from the URL's host is granted.
+ *
+ * @param codesource the codesource
+ * @return the permissions granted to the codesource
+ */
+ @Override
+ protected PermissionCollection getPermissions(CodeSource codesource) {
+ Permissions permissions = new Permissions();
+ permissions.add(new AllPermission());
+ return permissions;
+ }
+}
diff --git a/festc_bootstrap/src/gov/epa/festc/boot/FestcLifecycleHandler.java b/festc_bootstrap/src/gov/epa/festc/boot/FestcLifecycleHandler.java
index 886f805..c0c2d22 100644
--- a/festc_bootstrap/src/gov/epa/festc/boot/FestcLifecycleHandler.java
+++ b/festc_bootstrap/src/gov/epa/festc/boot/FestcLifecycleHandler.java
@@ -1,23 +1,23 @@
-package gov.epa.festc.boot;
-
-import org.java.plugin.PluginClassLoader;
-import org.java.plugin.registry.PluginDescriptor;
-import org.java.plugin.standard.StandardPluginLifecycleHandler;
-
-import simphony.util.messages.MessageCenter;
-
-/**
- * LifecycleHandler that creates PavePluginClassLoaders.
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-public class FestcLifecycleHandler extends StandardPluginLifecycleHandler {
-
- private static final MessageCenter msgCenter = MessageCenter.getMessageCenter(FestcLifecycleHandler.class);
-
- protected PluginClassLoader createPluginClassLoader(PluginDescriptor descriptor) {
- msgCenter.debug("Creating class loader");
- return new FestcClassLoader(getPluginManager(), descriptor, getClass().getClassLoader());
- }
-}
+package gov.epa.festc.boot;
+
+import org.java.plugin.PluginClassLoader;
+import org.java.plugin.registry.PluginDescriptor;
+import org.java.plugin.standard.StandardPluginLifecycleHandler;
+
+import simphony.util.messages.MessageCenter;
+
+/**
+ * LifecycleHandler that creates PavePluginClassLoaders.
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+public class FestcLifecycleHandler extends StandardPluginLifecycleHandler {
+
+ private static final MessageCenter msgCenter = MessageCenter.getMessageCenter(FestcLifecycleHandler.class);
+
+ protected PluginClassLoader createPluginClassLoader(PluginDescriptor descriptor) {
+ msgCenter.debug("Creating class loader");
+ return new FestcClassLoader(getPluginManager(), descriptor, getClass().getClassLoader());
+ }
+}
diff --git a/festc_bootstrap/ui.properties b/festc_bootstrap/ui.properties
index 5edee0e..1d17b6f 100644
--- a/festc_bootstrap/ui.properties
+++ b/festc_bootstrap/ui.properties
@@ -1,9 +1,9 @@
-# menu order -- elements are menu ids, or menu labels, sub menus are not
-# supported yet
-menu.order=File, Plots, Window, Help
-
-# toolbar group order. "," separates groups but does NOT insert a
-# toolbar separator. ":" separates groups and does insert a separator
-toolbar.group.order= file : window : runGraph, anl.verdi.core.bar.formula_group
-
-
+# menu order -- elements are menu ids, or menu labels, sub menus are not
+# supported yet
+menu.order=File, Plots, Window, Help
+
+# toolbar group order. "," separates groups but does NOT insert a
+# toolbar separator. ":" separates groups and does insert a separator
+toolbar.group.order= file : window : runGraph, anl.verdi.core.bar.formula_group
+
+
diff --git a/festc_core/.project b/festc_core/.project
index 68a6dc2..8ac7f5b 100644
--- a/festc_core/.project
+++ b/festc_core/.project
@@ -1,17 +1,17 @@
-
-
- festc_core
-
-
-
-
-
- org.eclipse.jdt.core.javabuilder
-
-
-
-
-
- org.eclipse.jdt.core.javanature
-
-
+
+
+ festc_core
+
+
+
+
+
+ org.eclipse.jdt.core.javabuilder
+
+
+
+
+
+ org.eclipse.jdt.core.javanature
+
+
diff --git a/festc_core/bin/gov/epa/festc/core/FestcApplication$1.class b/festc_core/bin/gov/epa/festc/core/FestcApplication$1.class
deleted file mode 100644
index 6c55d8f..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/FestcApplication$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/FestcApplication$ProjectEvent.class b/festc_core/bin/gov/epa/festc/core/FestcApplication$ProjectEvent.class
deleted file mode 100644
index 5d130da..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/FestcApplication$ProjectEvent.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/FestcApplication.class b/festc_core/bin/gov/epa/festc/core/FestcApplication.class
deleted file mode 100644
index d99892b..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/FestcApplication.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/FestcConfigurator.class b/festc_core/bin/gov/epa/festc/core/FestcConfigurator.class
deleted file mode 100644
index e4c81de..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/FestcConfigurator.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/FestcConstants.class b/festc_core/bin/gov/epa/festc/core/FestcConstants.class
deleted file mode 100644
index 6906e26..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/FestcConstants.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/FestcGUI.class b/festc_core/bin/gov/epa/festc/core/FestcGUI.class
deleted file mode 100644
index 7132927..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/FestcGUI.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/FestcPlugin.class b/festc_core/bin/gov/epa/festc/core/FestcPlugin.class
deleted file mode 100644
index 91e14b2..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/FestcPlugin.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/Project.class b/festc_core/bin/gov/epa/festc/core/Project.class
deleted file mode 100644
index b770e4c..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/Project.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/VersionInfo.class b/festc_core/bin/gov/epa/festc/core/VersionInfo.class
deleted file mode 100644
index cc86ea0..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/VersionInfo.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/WriteVersionInfo.class b/festc_core/bin/gov/epa/festc/core/WriteVersionInfo.class
deleted file mode 100644
index dbef987..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/WriteVersionInfo.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/action/About.class b/festc_core/bin/gov/epa/festc/core/action/About.class
deleted file mode 100644
index 9e26912..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/action/About.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/action/CopyAction.class b/festc_core/bin/gov/epa/festc/core/action/CopyAction.class
deleted file mode 100644
index dfd6737..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/action/CopyAction.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/action/CreateAction.class b/festc_core/bin/gov/epa/festc/core/action/CreateAction.class
deleted file mode 100644
index 60ff190..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/action/CreateAction.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/action/DeleteAction.class b/festc_core/bin/gov/epa/festc/core/action/DeleteAction.class
deleted file mode 100644
index e4aa1a0..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/action/DeleteAction.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/action/ExitAction.class b/festc_core/bin/gov/epa/festc/core/action/ExitAction.class
deleted file mode 100644
index 6333a79..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/action/ExitAction.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/action/Help.class b/festc_core/bin/gov/epa/festc/core/action/Help.class
deleted file mode 100644
index c0dbcdc..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/action/Help.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/action/OpenAction.class b/festc_core/bin/gov/epa/festc/core/action/OpenAction.class
deleted file mode 100644
index a3ed3b5..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/action/OpenAction.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/action/SaveAction.class b/festc_core/bin/gov/epa/festc/core/action/SaveAction.class
deleted file mode 100644
index d4f0a95..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/action/SaveAction.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/Beld4DataGenFields.class b/festc_core/bin/gov/epa/festc/core/proj/Beld4DataGenFields.class
deleted file mode 100644
index 3fa08aa..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/Beld4DataGenFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/CallBack.class b/festc_core/bin/gov/epa/festc/core/proj/CallBack.class
deleted file mode 100644
index 4050f5f..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/CallBack.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/DomainFields.class b/festc_core/bin/gov/epa/festc/core/proj/DomainFields.class
deleted file mode 100644
index c6da34b..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/DomainFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/Epic2CMAQFields.class b/festc_core/bin/gov/epa/festc/core/proj/Epic2CMAQFields.class
deleted file mode 100644
index af41d96..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/Epic2CMAQFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/EpicAppFields.class b/festc_core/bin/gov/epa/festc/core/proj/EpicAppFields.class
deleted file mode 100644
index 22a7919..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/EpicAppFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/EpicSpinupFields.class b/festc_core/bin/gov/epa/festc/core/proj/EpicSpinupFields.class
deleted file mode 100644
index e39171f..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/EpicSpinupFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/EpicYearlyAverage2CMAQFields.class b/festc_core/bin/gov/epa/festc/core/proj/EpicYearlyAverage2CMAQFields.class
deleted file mode 100644
index b17bac9..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/EpicYearlyAverage2CMAQFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/ManFileModFields.class b/festc_core/bin/gov/epa/festc/core/proj/ManFileModFields.class
deleted file mode 100644
index c642e0a..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/ManFileModFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/ManageAppFields.class b/festc_core/bin/gov/epa/festc/core/proj/ManageAppFields.class
deleted file mode 100644
index f5172f8..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/ManageAppFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/ManageSpinupFields.class b/festc_core/bin/gov/epa/festc/core/proj/ManageSpinupFields.class
deleted file mode 100644
index 7206d4f..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/ManageSpinupFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/Mcip2EpicFields.class b/festc_core/bin/gov/epa/festc/core/proj/Mcip2EpicFields.class
deleted file mode 100644
index 7fdbe17..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/Mcip2EpicFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/PageFields.class b/festc_core/bin/gov/epa/festc/core/proj/PageFields.class
deleted file mode 100644
index 679e45c..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/PageFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/ProjectLoader.class b/festc_core/bin/gov/epa/festc/core/proj/ProjectLoader.class
deleted file mode 100644
index 189bf6d..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/ProjectLoader.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/SiteFilesFields.class b/festc_core/bin/gov/epa/festc/core/proj/SiteFilesFields.class
deleted file mode 100644
index 8c79a46..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/SiteFilesFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/SiteInfoGenFields.class b/festc_core/bin/gov/epa/festc/core/proj/SiteInfoGenFields.class
deleted file mode 100644
index 23d83aa..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/SiteInfoGenFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/SoilFilesFields.class b/festc_core/bin/gov/epa/festc/core/proj/SoilFilesFields.class
deleted file mode 100644
index abfc832..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/SoilFilesFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/core/proj/VisualizationFields.class b/festc_core/bin/gov/epa/festc/core/proj/VisualizationFields.class
deleted file mode 100644
index 61073d2..0000000
Binary files a/festc_core/bin/gov/epa/festc/core/proj/VisualizationFields.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/AboutDialog$1.class b/festc_core/bin/gov/epa/festc/gui/AboutDialog$1.class
deleted file mode 100644
index d67952a..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/AboutDialog$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/AboutDialog.class b/festc_core/bin/gov/epa/festc/gui/AboutDialog.class
deleted file mode 100644
index 3d9b7ae..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/AboutDialog.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel$1.class b/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel$1.class
deleted file mode 100644
index 88c7efe..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel$2.class b/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel$2.class
deleted file mode 100644
index 695f66d..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel.class b/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel.class
deleted file mode 100644
index 2e79557..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Beld4DataGenPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CopyProjectPanel.class b/festc_core/bin/gov/epa/festc/gui/CopyProjectPanel.class
deleted file mode 100644
index 102cac3..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CopyProjectPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel$1.class b/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel$1.class
deleted file mode 100644
index 9147604..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel$2.class b/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel$2.class
deleted file mode 100644
index 4f2f52a..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel.class b/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel.class
deleted file mode 100644
index ec4e414..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateAppManFilesPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateSiteFilesPanel.class b/festc_core/bin/gov/epa/festc/gui/CreateSiteFilesPanel.class
deleted file mode 100644
index 982b355..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateSiteFilesPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel$1.class b/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel$1.class
deleted file mode 100644
index a9245d9..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel$2.class b/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel$2.class
deleted file mode 100644
index 5bae925..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel.class b/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel.class
deleted file mode 100644
index 471d43b..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateSiteInfoPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateSoilFilesPanel.class b/festc_core/bin/gov/epa/festc/gui/CreateSoilFilesPanel.class
deleted file mode 100644
index 552563a..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateSoilFilesPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel$1.class b/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel$1.class
deleted file mode 100644
index 54ed415..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel$2.class b/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel$2.class
deleted file mode 100644
index 2a1b2fc..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel.class b/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel.class
deleted file mode 100644
index bbeecf8..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CreateSpinupManFilesPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel$1.class b/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel$1.class
deleted file mode 100644
index a65d54a..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel$2.class b/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel$2.class
deleted file mode 100644
index 0fb9f38..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel.class b/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel.class
deleted file mode 100644
index 526d505..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/CropSelectionPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/DeleteProjectPanel.class b/festc_core/bin/gov/epa/festc/gui/DeleteProjectPanel.class
deleted file mode 100644
index f58e17b..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/DeleteProjectPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/DomainPanel.class b/festc_core/bin/gov/epa/festc/gui/DomainPanel.class
deleted file mode 100644
index 18f0658..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/DomainPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$1.class b/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$1.class
deleted file mode 100644
index a0b95b3..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$2.class b/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$2.class
deleted file mode 100644
index 2a76165..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$3$1.class b/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$3$1.class
deleted file mode 100644
index cd0ecae..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$3$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$3.class b/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$3.class
deleted file mode 100644
index 6f40065..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel$3.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel.class b/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel.class
deleted file mode 100644
index a43e396..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Epic2CMAQPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel$1.class b/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel$1.class
deleted file mode 100644
index b26ea08..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel$2.class b/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel$2.class
deleted file mode 100644
index 344009e..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel.class b/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel.class
deleted file mode 100644
index 0c4e394..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicRunAppPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel$1.class b/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel$1.class
deleted file mode 100644
index 7b7b464..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel$2.class b/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel$2.class
deleted file mode 100644
index 87085dd..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel.class b/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel.class
deleted file mode 100644
index 0120696..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicSpinupPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$1.class b/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$1.class
deleted file mode 100644
index bfd130a..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$2.class b/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$2.class
deleted file mode 100644
index c60b459..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$3.class b/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$3.class
deleted file mode 100644
index 4b6cec7..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$3.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$4.class b/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$4.class
deleted file mode 100644
index 7f35645..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel$4.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel.class b/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel.class
deleted file mode 100644
index 9020530..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$1.class b/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$1.class
deleted file mode 100644
index 450f0bf..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$2.class b/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$2.class
deleted file mode 100644
index 8b5bfb3..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$3.class b/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$3.class
deleted file mode 100644
index 859cd23..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents$3.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents.class b/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents.class
deleted file mode 100644
index 2c4d338..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/HelpWindowWithContents.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ListWidget.class b/festc_core/bin/gov/epa/festc/gui/ListWidget.class
deleted file mode 100644
index 78ff410..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ListWidget.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$1.class b/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$1.class
deleted file mode 100644
index 8680108..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$2.class b/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$2.class
deleted file mode 100644
index 690c42e..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$3.class b/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$3.class
deleted file mode 100644
index 9537ffe..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$3.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$4.class b/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$4.class
deleted file mode 100644
index d601bea..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel$4.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel.class b/festc_core/bin/gov/epa/festc/gui/ManFileModPanel.class
deleted file mode 100644
index 7d7cc75..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ManFileModPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$1.class b/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$1.class
deleted file mode 100644
index f050998..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$2.class b/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$2.class
deleted file mode 100644
index 7b00040..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$3.class b/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$3.class
deleted file mode 100644
index 5debae3..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$3.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$4.class b/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$4.class
deleted file mode 100644
index b161d5d..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel$4.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel.class b/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel.class
deleted file mode 100644
index 270b0d9..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/Mcip2EpicPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/MessageBoard.class b/festc_core/bin/gov/epa/festc/gui/MessageBoard.class
deleted file mode 100644
index 9292447..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/MessageBoard.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/MessagePanel.class b/festc_core/bin/gov/epa/festc/gui/MessagePanel.class
deleted file mode 100644
index c26c225..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/MessagePanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/PlotEventListener.class b/festc_core/bin/gov/epa/festc/gui/PlotEventListener.class
deleted file mode 100644
index a4c56f9..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/PlotEventListener.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/SaveProjectPanel.class b/festc_core/bin/gov/epa/festc/gui/SaveProjectPanel.class
deleted file mode 100644
index 6cb7aa6..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/SaveProjectPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$IncrementInfo.class b/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$IncrementInfo.class
deleted file mode 100644
index 7b96a1e..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$IncrementInfo.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$IncrementType.class b/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$IncrementType.class
deleted file mode 100644
index ba8a164..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$IncrementType.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$ScrollableSizeHint.class b/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$ScrollableSizeHint.class
deleted file mode 100644
index 7b6c9d3..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ScrollablePanel$ScrollableSizeHint.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ScrollablePanel.class b/festc_core/bin/gov/epa/festc/gui/ScrollablePanel.class
deleted file mode 100644
index 4df7963..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ScrollablePanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/SingleLineMessagePanel.class b/festc_core/bin/gov/epa/festc/gui/SingleLineMessagePanel.class
deleted file mode 100644
index 0df38b3..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/SingleLineMessagePanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ToolsPanel$1.class b/festc_core/bin/gov/epa/festc/gui/ToolsPanel$1.class
deleted file mode 100644
index d75b290..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ToolsPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ToolsPanel$JGradientButton.class b/festc_core/bin/gov/epa/festc/gui/ToolsPanel$JGradientButton.class
deleted file mode 100644
index 1291aec..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ToolsPanel$JGradientButton.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ToolsPanel.class b/festc_core/bin/gov/epa/festc/gui/ToolsPanel.class
deleted file mode 100644
index 2399263..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ToolsPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/UtilFieldsPanel.class b/festc_core/bin/gov/epa/festc/gui/UtilFieldsPanel.class
deleted file mode 100644
index 749d085..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/UtilFieldsPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel$1.class b/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel$1.class
deleted file mode 100644
index 4ae7089..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel$2.class b/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel$2.class
deleted file mode 100644
index c1676ee..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel.class b/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel.class
deleted file mode 100644
index cf4eb73..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSiteFilesPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel$1.class b/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel$1.class
deleted file mode 100644
index 6cec1eb..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel$2.class b/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel$2.class
deleted file mode 100644
index 54ef1b0..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel.class b/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel.class
deleted file mode 100644
index 596c967..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/UtilGenerateSoilMatchPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ViewFileDialog$1.class b/festc_core/bin/gov/epa/festc/gui/ViewFileDialog$1.class
deleted file mode 100644
index a132bbb..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ViewFileDialog$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ViewFileDialog$2.class b/festc_core/bin/gov/epa/festc/gui/ViewFileDialog$2.class
deleted file mode 100644
index 9808b58..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ViewFileDialog$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/ViewFileDialog.class b/festc_core/bin/gov/epa/festc/gui/ViewFileDialog.class
deleted file mode 100644
index b411d4e..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/ViewFileDialog.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$1$1.class b/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$1$1.class
deleted file mode 100644
index 61ae2b1..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$1$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$1.class b/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$1.class
deleted file mode 100644
index 6cc0939..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$2.class b/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$2.class
deleted file mode 100644
index 6b7fc02..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$3.class b/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$3.class
deleted file mode 100644
index efd9f85..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$3.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$4.class b/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$4.class
deleted file mode 100644
index baefec9..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel$4.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel.class b/festc_core/bin/gov/epa/festc/gui/VisualizationPanel.class
deleted file mode 100644
index 65f0046..0000000
Binary files a/festc_core/bin/gov/epa/festc/gui/VisualizationPanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/test/TestCropDataTablePanel$1.class b/festc_core/bin/gov/epa/festc/test/TestCropDataTablePanel$1.class
deleted file mode 100644
index e1cc3cf..0000000
Binary files a/festc_core/bin/gov/epa/festc/test/TestCropDataTablePanel$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/test/TestCropDataTablePanel.class b/festc_core/bin/gov/epa/festc/test/TestCropDataTablePanel.class
deleted file mode 100644
index 3a14414..0000000
Binary files a/festc_core/bin/gov/epa/festc/test/TestCropDataTablePanel.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/BrowseAction$1.class b/festc_core/bin/gov/epa/festc/util/BrowseAction$1.class
deleted file mode 100644
index b9bbd1d..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/BrowseAction$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/BrowseAction.class b/festc_core/bin/gov/epa/festc/util/BrowseAction.class
deleted file mode 100644
index 334f3fa..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/BrowseAction.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/Constants$1.class b/festc_core/bin/gov/epa/festc/util/Constants$1.class
deleted file mode 100644
index 1ee6200..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/Constants$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/Constants.class b/festc_core/bin/gov/epa/festc/util/Constants.class
deleted file mode 100644
index 173fe9a..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/Constants.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/CustomDialog.class b/festc_core/bin/gov/epa/festc/util/CustomDialog.class
deleted file mode 100644
index e3fcd9d..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/CustomDialog.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/DateFormat.class b/festc_core/bin/gov/epa/festc/util/DateFormat.class
deleted file mode 100644
index 200b870..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/DateFormat.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/FileAction$1.class b/festc_core/bin/gov/epa/festc/util/FileAction$1.class
deleted file mode 100644
index 634e802..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/FileAction$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/FileAction$2.class b/festc_core/bin/gov/epa/festc/util/FileAction$2.class
deleted file mode 100644
index bdbd211..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/FileAction$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/FileAction.class b/festc_core/bin/gov/epa/festc/util/FileAction.class
deleted file mode 100644
index aa9671c..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/FileAction.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/FileRunner$1.class b/festc_core/bin/gov/epa/festc/util/FileRunner$1.class
deleted file mode 100644
index 2fab8f7..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/FileRunner$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/FileRunner$2.class b/festc_core/bin/gov/epa/festc/util/FileRunner$2.class
deleted file mode 100644
index 58e97c0..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/FileRunner$2.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/FileRunner.class b/festc_core/bin/gov/epa/festc/util/FileRunner.class
deleted file mode 100644
index e84fe1f..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/FileRunner.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/FormattedTextFieldDemo$1.class b/festc_core/bin/gov/epa/festc/util/FormattedTextFieldDemo$1.class
deleted file mode 100644
index d3f074d..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/FormattedTextFieldDemo$1.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/FormattedTextFieldDemo.class b/festc_core/bin/gov/epa/festc/util/FormattedTextFieldDemo.class
deleted file mode 100644
index 9a50236..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/FormattedTextFieldDemo.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/Messenger.class b/festc_core/bin/gov/epa/festc/util/Messenger.class
deleted file mode 100644
index 2611e65..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/Messenger.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/ModelYearInconsistantException.class b/festc_core/bin/gov/epa/festc/util/ModelYearInconsistantException.class
deleted file mode 100644
index d50e31e..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/ModelYearInconsistantException.class and /dev/null differ
diff --git a/festc_core/bin/gov/epa/festc/util/SpringLayoutGenerator.class b/festc_core/bin/gov/epa/festc/util/SpringLayoutGenerator.class
deleted file mode 100644
index 7d78a5d..0000000
Binary files a/festc_core/bin/gov/epa/festc/util/SpringLayoutGenerator.class and /dev/null differ
diff --git a/festc_core/core.iml b/festc_core/core.iml
index d1df568..fc56568 100644
--- a/festc_core/core.iml
+++ b/festc_core/core.iml
@@ -1,46 +1,46 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/festc_core/core.jar b/festc_core/core.jar
new file mode 100644
index 0000000..01b6aa1
Binary files /dev/null and b/festc_core/core.jar differ
diff --git a/festc_core/dist_plugin.xml b/festc_core/dist_plugin.xml
index d1f8b1a..3ebd377 100644
--- a/festc_core/dist_plugin.xml
+++ b/festc_core/dist_plugin.xml
@@ -1,174 +1,174 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/festc_core/lib/log4j-1.2-api-2.0-rc1.jar b/festc_core/lib/log4j-1.2-api-2.0-rc1.jar
deleted file mode 100644
index 5353055..0000000
Binary files a/festc_core/lib/log4j-1.2-api-2.0-rc1.jar and /dev/null differ
diff --git a/festc_core/lib/log4j-1.2-api-2.22.1.jar b/festc_core/lib/log4j-1.2-api-2.22.1.jar
new file mode 100644
index 0000000..de57f34
Binary files /dev/null and b/festc_core/lib/log4j-1.2-api-2.22.1.jar differ
diff --git a/festc_core/lib/log4j-api-2.0-rc1.jar b/festc_core/lib/log4j-api-2.0-rc1.jar
deleted file mode 100644
index a8b9261..0000000
Binary files a/festc_core/lib/log4j-api-2.0-rc1.jar and /dev/null differ
diff --git a/festc_core/lib/log4j-api-2.22.1.jar b/festc_core/lib/log4j-api-2.22.1.jar
new file mode 100644
index 0000000..b77e55e
Binary files /dev/null and b/festc_core/lib/log4j-api-2.22.1.jar differ
diff --git a/festc_core/lib/log4j-core-2.0-rc1.jar b/festc_core/lib/log4j-core-2.0-rc1.jar
deleted file mode 100644
index 5a9f29a..0000000
Binary files a/festc_core/lib/log4j-core-2.0-rc1.jar and /dev/null differ
diff --git a/festc_core/lib/log4j-core-2.22.1.jar b/festc_core/lib/log4j-core-2.22.1.jar
new file mode 100644
index 0000000..0be3f1f
Binary files /dev/null and b/festc_core/lib/log4j-core-2.22.1.jar differ
diff --git a/festc_core/lib/log4j-jcl-2.0-rc1.jar b/festc_core/lib/log4j-jcl-2.0-rc1.jar
deleted file mode 100644
index 66c7369..0000000
Binary files a/festc_core/lib/log4j-jcl-2.0-rc1.jar and /dev/null differ
diff --git a/festc_core/lib/log4j-jcl-2.22.1.jar b/festc_core/lib/log4j-jcl-2.22.1.jar
new file mode 100644
index 0000000..3b509ac
Binary files /dev/null and b/festc_core/lib/log4j-jcl-2.22.1.jar differ
diff --git a/festc_core/lib/log4j-taglib-2.0-rc1.jar b/festc_core/lib/log4j-taglib-2.0-rc1.jar
deleted file mode 100644
index be6d1cd..0000000
Binary files a/festc_core/lib/log4j-taglib-2.0-rc1.jar and /dev/null differ
diff --git a/festc_core/lib/log4j-taglib-2.21.1.jar b/festc_core/lib/log4j-taglib-2.21.1.jar
new file mode 100644
index 0000000..fb00f74
Binary files /dev/null and b/festc_core/lib/log4j-taglib-2.21.1.jar differ
diff --git a/festc_core/plugin.xml b/festc_core/plugin.xml
index d927212..a2ea022 100644
--- a/festc_core/plugin.xml
+++ b/festc_core/plugin.xml
@@ -1,179 +1,179 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/festc_core/src/gov/epa/festc/core/FestcApplication.java b/festc_core/src/gov/epa/festc/core/FestcApplication.java
index 67cfa17..d5993ed 100644
--- a/festc_core/src/gov/epa/festc/core/FestcApplication.java
+++ b/festc_core/src/gov/epa/festc/core/FestcApplication.java
@@ -1,607 +1,628 @@
-package gov.epa.festc.core;
-
-import gov.epa.festc.core.proj.CallBack;
-import gov.epa.festc.core.proj.DomainFields;
-import gov.epa.festc.core.proj.ProjectLoader;
-import gov.epa.festc.core.proj.SiteInfoGenFields;
-import gov.epa.festc.gui.CopyProjectPanel;
-import gov.epa.festc.gui.DeleteProjectPanel;
-import gov.epa.festc.gui.DomainPanel;
-import gov.epa.festc.gui.HelpWindowWithContents;
-import gov.epa.festc.gui.PlotEventListener;
-import gov.epa.festc.gui.SaveProjectPanel;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.CustomDialog;
-import gov.epa.festc.util.FileRunner;
-
-import java.io.BufferedWriter;
-import java.io.File;
-import java.io.FileWriter;
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.event.ListDataEvent;
-import javax.swing.event.ListDataListener;
-import javax.swing.event.ListSelectionEvent;
-import javax.swing.event.ListSelectionListener;
-
-import org.apache.log4j.Level;
-
-import saf.core.ui.util.FileChooserUtilities;
-import simphony.util.messages.MessageCenter;
-import simphony.util.messages.MessageEvent;
-import simphony.util.messages.MessageEventListener;
-
-/**
- * Main FEST-C application facade.
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-public class FestcApplication implements ListSelectionListener,
- ListDataListener, CallBack {
-
- private static MessageCenter msg = MessageCenter
- .getMessageCenter(FestcApplication.class);
-
- private FestcGUI gui;
-
- private Project project;
-
- private File currentDir;
- private File infoDir;
-
- private File projFile;
-
- private String epicHome;
- private String workdir;
-
- private String sSimYear;
- private String sFertYear;
- private String sMinAcre;
-
- private boolean allowDiffCheck;
-
- private enum ProjectEvent {CREATED, OPENED, SAVE, SAVED};
-
- private List plotListeners = new ArrayList();
-
- public FestcApplication() {
- project = new Project();
- }
-
- public FestcGUI getGui() {
- return gui;
- }
-
- public void init(FestcGUI gui) {
- this.gui = gui;
- MessageCenter.addMessageListener(new MessageEventListener() {
- public void messageReceived(MessageEvent messageEvent) {
- if (messageEvent.getLevel().equals(Level.ERROR)) {
- FestcApplication.this.gui.showMessage("Error",
- (messageEvent.getMessage() != null ? messageEvent.getMessage().toString() : "")
- + ": "
- + messageEvent.getThrowable().getMessage());
- }
- }
- });
-
- // String curdir = Constants.getProperty(Constants.EPIC_HOME, msg);
- // String usrhome = Constants.getProperty(Constants.USER_HOME, msg);
- epicHome = Constants.getProperty(Constants.EPIC_HOME, msg);
- workdir = Constants.getProperty(Constants.WORK_DIR, msg);
- this.currentDir = new File(workdir + "/scenarios/scenariosInfo/");
- this.infoDir = new File(workdir + "/scenarios/scenariosInfo/");
- File logdir = new File(workdir + "/scenarios/scenariosInfo/logs");
- if ( !logdir.exists())
- logdir.mkdirs();
- String allow = Constants.getProperty(Constants.ALLOW_DIFF_CHECK, msg);
- allowDiffCheck = (allow != null && allow.equalsIgnoreCase("true")) ? true : false;
- //System.out.println("Allow: " + allow + allowDiffCheck);
- }
-
- /**
- * Gets the currently loaded Project.
- *
- * @return the currently loaded Project.
- */
- public Project getProject() {
- return project;
- }
-
- /**
- * Gets the currently browsed directory.
- *
- * @return the currently browsed directory.
- */
- public File getCurrentDir() {
- return currentDir;
- }
-
- /**
- * Sets the current directory for next browsing.
- *
- * @return the current directory.
- */
- public void setCurrentDir(File curdir) {
- currentDir = curdir;
- }
-
- /***
- * Gets the modeling year associated with the app
- */
-
-// public String getSSimYear() {
-// return this.sSimYear;
-// }
-//
-// public void setSSimYear(String year) {
-// this.sSimYear = year;
-// }
-
- /***
- * Sets the fertilizer year associated with the app
- */
-
-// public String getSFertYear() {
-// return this.sFertYear;
-// }
-//
-// public void setSFertYear(String year) {
-// this.sFertYear = year;
-// }
-
- /***
- * Sets the minimum crop acres associated with the app
- */
-
-// public String getSMinAcre() {
-// return this.sMinAcre;
-// }
-//
-// public void setSMinAcre(String minAcre) {
-// this.sMinAcre = minAcre;
-// }
-
- /**
- * Exits the application.
- *
- * @return true if the exit was successful and the application should be
- * terminated, otherwise false.
- */
- public boolean exit() {
- //
- return true;
- }
-
- public void valueChanged(ListSelectionEvent e) {
- //
- }
-
- // listeners for the formula model
- public void contentsChanged(ListDataEvent e) {
- }
-
- /**
- * Shows help.
- */
- public void showHelp() {
- String helpDir = System.getProperty("user.dir");
- if (helpDir == null)
- return;
- helpDir = helpDir + "/help";
- //String helpName1 = helpDir + "/userManualIndex.htm";
- String helpName2 = helpDir + "/userManual.htm";
- HelpWindowWithContents.showContents(null, "FEST-C User Guide",
- null, helpName2);
-
- //msg.warn("help: " + helpName1);
- msg.warn("help: " + helpName2);
- }
-
- @Override
- public void intervalAdded(ListDataEvent e) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void intervalRemoved(ListDataEvent e) {
- // TODO Auto-generated method stub
-
- }
-
- /**
- * Create a new project -- this is to create a new scenario from scratch.
- *
- */
- public void createProject() {
- new CustomDialog(this, gui.getFrame(), true, new DomainPanel(this),
- Constants.NEW_SCENARIO, "Create a New Scenario", projFile);
- }
-
- /**
- * Copy from an existing project -- This opens a dialog.
- *
- */
- public void copyProject() {
- new CustomDialog(this, gui.getFrame(), true, new CopyProjectPanel(this),
- Constants.COPY_SCENARIO, "Copy from an Existing Scenario", projFile);
- }
-
- public void deleteProject() {
- new CustomDialog(this, gui.getFrame(), true, new DeleteProjectPanel(this),
- Constants.DELETE_SCENARIO, "Delete an Existing Scenario", projFile);
- }
-
- public static MessageCenter getMsg() {
- return msg;
- }
-
- public File getProjFile() {
- return projFile;
- }
-
- public String getEpicHome() {
- return epicHome;
- }
-
- public String getWorkDir() {
- return workdir;
- }
-
- public List getPlotListeners() {
- return plotListeners;
- }
-
- /**
- * Opens a saved project -- a set of text fields and combobox selections. This opens a
- * file dialog.
- */
- public void openProject() {
- if (projFile != null ) {
-// int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
-// if ( option == 0 )
- saveProject();
- }
- File file = FileChooserUtilities.getOpenFile(infoDir);
- openProject(file);
- }
-
- /**
- * Opens the specified file as a project.
- *
- * @param file the project file
- */
- public void openProject(File file) {
- if (file != null) {
- try {
- ProjectLoader projLoader = new ProjectLoader();
- project = new Project();
- projLoader.load(file, project);
- projFile = file;
- currentDir = file.getParentFile();
- firePlotEvent(ProjectEvent.OPENED);
- } catch (Exception e) {
- msg.error("Error while loading project: ", e);
- }
- }
- }
-
- /**
- * Saves the current project -- the current set of text fields and comboboxes.
- * @throws Exception
- */
- public void saveProject() {
- new CustomDialog(this, gui.getFrame(), true, new SaveProjectPanel(projFile), Constants.SAVE_SCENARIO, "Save Scenario", projFile);
- }
-
- /**
- * Saves the current project as -- the current set of text fields and comboboxes.
- */
- public void saveProjectAs() {
- File file = FileChooserUtilities.getSaveFile(currentDir);
- //if (file != null) {
- saveProj(file);
- //}
- }
-
- private void saveProj(File file) {
- if (file != null) {
- firePlotEvent(ProjectEvent.SAVE);
-
- try {
- ProjectLoader projLoader = new ProjectLoader();
- projLoader.save(file, project);
- projFile = file;
- currentDir = file.getParentFile();
- } catch (Exception e) {
- e.printStackTrace();
- msg.error("Error while saving project", e);
- }
- }
- }
-
- public void showTab(String tabId) {
- gui.setActive(tabId);
- }
-
- public static MessageCenter getMessageCenter() {
- return msg;
- }
-
- public void addPlotListener(PlotEventListener listener) {
- plotListeners.add(listener);
- }
-
- public void firePlotEvent(ProjectEvent event) {
- for (PlotEventListener listener : plotListeners) {
- if (event == ProjectEvent.CREATED)
- listener.newProjectCreated();
-
- if (event == ProjectEvent.OPENED)
- listener.projectLoaded();
-
- if (event == ProjectEvent.SAVE)
- listener.saveProjectRequested();
- }
- }
-
- public void showMessage(String title, String message) {
- this.gui.showMessage(title, message);
- }
-
- @Override
- public void onCall(String cmd, JPanel contentPanel) throws Exception {
- if (cmd.equals(Constants.NEW_SCENARIO)) {
-
- DomainPanel panel = (DomainPanel)contentPanel;
- panel.validateFields();
- String newScenario = panel.getScenaName();
-
- projFile = new File(workdir + "/scenarios/scenariosInfo/", newScenario);
- if ( projFile.isFile() )
- throw new Exception("New scenario name already exist.");
-
- DomainFields domain =(DomainFields) project.getPage(DomainFields.class.getCanonicalName());
- if (domain == null ){
- domain = new DomainFields();
- project.addPage(domain);
- }
- domain.setGridName(panel.getGridName());
- domain.setProj(panel.getProj4proj());
-
- domain.setCols(panel.getCols());
- domain.setRows(panel.getRows());
- domain.setXcellSize(panel.getxSize());
- domain.setYcellSize(panel.getySize());
- domain.setXmin(panel.getXmin());
- domain.setYmin(panel.getYmin());
- domain.setSimYear(panel.getSimuYear());
- domain.setNlcdYear(panel.getNlcdYear());
- domain.setCMinAcres("40.0");
- domain.setScenarioDir(workdir + "/scenarios/" + newScenario);
-
- project.setName(newScenario);
-
- /***
- * NOTE: to populate all the domain info from newly created scenario,
- * a new method newProjectCreated() is added to PlotEventListener interface.
- */
-
- firePlotEvent(ProjectEvent.CREATED);
- saveProj(projFile);
-
- newScenarioFold(newScenario, panel.getSimuYear());
- System.out.println("Created New Scenario: " + newScenario);
- }
-
- if (cmd.equals(Constants.COPY_SCENARIO)) {
- CopyProjectPanel panel = (CopyProjectPanel)contentPanel;
- panel.validateFields();
- String existScenNameWdir = panel.getExistScenario();
- String newScenName = panel.getNewScenName();
- File existScenFile = new File(existScenNameWdir);
- //copyScenarioFold( existScenNameWdir, newScenName, panel.getSimuYear());
- if ( ! existScenFile.isFile() )
- throw new Exception("Scenario " + existScenNameWdir + " does not exist. " );
-
- try {
- openProject(existScenFile);
- } catch (Exception e) {
- msg.warn("Error copying scenario " + existScenNameWdir + ".", e.getMessage());
- }
- SiteInfoGenFields fields = (SiteInfoGenFields) project.getPage(SiteInfoGenFields.class.getCanonicalName());
- DomainFields domain =(DomainFields) project.getPage(DomainFields.class.getCanonicalName());
- if (domain == null ){
- domain = new DomainFields();
- project.addPage(domain);
- }
- domain.setGridName(fields.getGridName());
- domain.setProj(fields.getProj());
- domain.setCols(fields.getCols());
- domain.setRows(fields.getRows());
- domain.setXcellSize(fields.getXcellSize());
- domain.setYcellSize(fields.getYcellSize());
- domain.setXmin(fields.getXmin());
- domain.setYmin(fields.getYmin());
- domain.setScenarioDir(workdir + "/scenarios/" + newScenName);
- domain.setSimYear(panel.getSimuYear());
- // get default nlcd year from simulation year
- domain.setNlcdYear();
- domain.setCMinAcres(domain.getCMinAcres());
- project.setName(newScenName);
-
- projFile = new File(workdir + "/scenarios/scenariosInfo/", newScenName);
- if ( projFile.isFile() )
- throw new Exception("New scenario \"" + newScenName + "\" already exist.");
-
- System.out.println("Creating Scenario: " + newScenName);
- firePlotEvent(ProjectEvent.CREATED);
- System.out.println("Saving Scenario: " + newScenName);
- saveProj(projFile);
- /***
- * NOTE: We still need to copy all the files from the existing scenario folder to the new scenario folder
- */
- System.out.println("Coping Scenario: " + newScenName);
- copyScenarioFold( existScenNameWdir, newScenName, panel.getSimuYear());
- //System.out.println("Finished Coping Scenario: " + newScenName);
- }
-
- if (cmd.equals(Constants.DELETE_SCENARIO)) {
- DeleteProjectPanel panel = (DeleteProjectPanel)contentPanel;
- panel.validateFields();
- String existScenName = panel.getExistScenario();
-
- File existScenFile = new File(workdir + "/scenarios/scenariosInfo/", existScenName);
- if ( ! existScenFile.isFile() )
- throw new Exception("Scenario " + existScenName + " does not exist. " );
- int option = JOptionPane.showConfirmDialog(null, "Confirm that you want to delete scenario: " + existScenName + "? ", "Confirmation", JOptionPane.YES_NO_OPTION);
- if ( option == 0 )
- deleteScenarioFold(existScenName);
- }
-
- if (cmd.equals(Constants.SAVE_SCENARIO)) {
- if (projFile != null) {
- firePlotEvent(ProjectEvent.SAVE);
- saveProj(projFile);
- }
- }
- }
-
- private void deleteScenarioFold(String oldName) {
- String file = workdir + "/scenarios/scenariosInfo/logs/delete_" +oldName + ".csh";
- String scenFile = workdir + "/scenarios/scenariosInfo/" +oldName;
- String oldScenDir = workdir + "/scenarios/" + oldName ;
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to delete an existing scenario" + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
- sb.append("# in support of the CMAS project, 2013" + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("#***************************************************************************************" + ls + ls);
- sb.append("rm -rf " + oldScenDir + ls);
- sb.append("rm -f " + scenFile + ls);
- try {
- File script = new File(file);
- Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- } catch (IOException e) {
- msg.error("Error generating delete scenario script file", e);
- return;
- }
-
- String log = file + ".log";
- FileRunner.runScript(file, log, msg);
-
- }
-
- private void copyScenarioFold(String oldNameWdir, String newName, String year) {
- Integer lIndex = oldNameWdir.lastIndexOf("/");
- String oldName = oldNameWdir.substring(lIndex+1);
- Integer sIndex = oldNameWdir.indexOf("scenarios");
- String oldDir = oldNameWdir.substring(0, sIndex);
- //System.out.printf(oldDir + " " + oldName);
-
- String file = workdir + "/scenarios/scenariosInfo/logs/copyScenario_" + newName+ "_from_" +oldName + ".csh"; ;
- String oldScenDir = oldDir + "/scenarios/" + oldName ;
- String newScenDir = workdir + "/scenarios/" + newName ;
- String commonDir = epicHome + "/common_data" ;
-
- year = "2"+(Integer.parseInt(year)-1);
-
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to copy all files from an existing scenario" + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
- sb.append("# in support of the CMAS project, 2010" + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("setenv EPIC_DIR " +epicHome +ls );
- sb.append("setenv SCEN_DIR " +newScenDir +ls );
- sb.append("setenv COMM_DIR " +commonDir +ls + ls );
- sb.append("#***************************************************************************************" + ls + ls);
- sb.append("cp -R " + oldScenDir + " " + newScenDir + ls);
- sb.append("sed -i '1s/^.\\{,8\\}/ " + year+ "/' $SCEN_DIR/share_data/EPICCONT.DAT" +ls ) ;
-
- try {
- File script = new File(file);
- Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- } catch (IOException e) {
- msg.error("Error generating copy scenario script file", e);
- return;
- }
-
- String log = file + ".log";
- FileRunner.runScript(file, log, msg);
-
- }
-
- private void newScenarioFold(String newName, String year) {
- String file = workdir + "/scenarios/scenariosInfo/logs/createScenario_"+ newName + ".csh";
- String newScenDir = workdir + "/scenarios/" + newName ;
- String commonDir = epicHome + "/common_data" ;
- year = "2"+(Integer.parseInt(year)-1);
-
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to copy all files from an existing scenario" + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
- sb.append("# in support of the CMAS project, 2010" + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("#***************************************************************************************" + ls + ls);
- sb.append("setenv EPIC_DIR " +epicHome +ls );
- sb.append("setenv SCEN_DIR " +newScenDir +ls );
- sb.append("setenv COMM_DIR " +commonDir +ls + ls );
-
- sb.append("# mkdir case dirs " +ls );
- sb.append("mkdir -p $SCEN_DIR/share_data" +ls );
- sb.append("mkdir -p $SCEN_DIR/scripts" +ls );
- sb.append("mkdir -p $SCEN_DIR/work_dir" +ls );
- sb.append("cp $COMM_DIR/EPIC_model/app/EPICCONT.DAT $SCEN_DIR/share_data/." +ls );
- sb.append("sed -i '1s/^.\\{,8\\}/ " + year+ "/' $SCEN_DIR/share_data/EPICCONT.DAT" +ls ) ;
-
- try {
- File script = new File(file);
- Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- } catch (IOException e) {
- msg.error("Error generating new scenario script file", e);
- return;
- }
-
- String log = file + ".log";
- FileRunner.runScript(file, log, msg);
-// msg.warn("Please modify " + newScenDir + "/share_data/EPICCONT.DAT ", "");
- }
-
- public boolean allowDiffCheck() {
- return allowDiffCheck;
- }
-
-}
+package gov.epa.festc.core;
+
+import gov.epa.festc.core.proj.CallBack;
+import gov.epa.festc.core.proj.DomainFields;
+import gov.epa.festc.core.proj.ProjectLoader;
+import gov.epa.festc.core.proj.SiteInfoGenFields;
+import gov.epa.festc.gui.CopyProjectPanel;
+import gov.epa.festc.gui.DeleteProjectPanel;
+import gov.epa.festc.gui.DomainPanel;
+import gov.epa.festc.gui.HelpWindowWithContents;
+import gov.epa.festc.gui.PlotEventListener;
+import gov.epa.festc.gui.SaveProjectPanel;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.CustomDialog;
+import gov.epa.festc.util.FileRunner;
+
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.List;
+
+import javax.swing.JOptionPane;
+import javax.swing.JPanel;
+import javax.swing.event.ListDataEvent;
+import javax.swing.event.ListDataListener;
+import javax.swing.event.ListSelectionEvent;
+import javax.swing.event.ListSelectionListener;
+
+import org.apache.log4j.Level;
+
+import saf.core.ui.util.FileChooserUtilities;
+import simphony.util.messages.MessageCenter;
+import simphony.util.messages.MessageEvent;
+import simphony.util.messages.MessageEventListener;
+
+/**
+ * Main FEST-C application facade.
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+public class FestcApplication implements ListSelectionListener,
+ ListDataListener, CallBack {
+
+ private static MessageCenter msg = MessageCenter
+ .getMessageCenter(FestcApplication.class);
+
+ private FestcGUI gui;
+
+ private Project project;
+
+ private File currentDir;
+ private File infoDir;
+
+ private File projFile;
+
+ private String epicHome;
+ private String workdir;
+
+ private String sSimYear;
+ private String sFertYear;
+ private String sMinAcre;
+
+ private boolean allowDiffCheck;
+
+ private enum ProjectEvent {CREATED, OPENED, SAVE, SAVED};
+
+ private List plotListeners = new ArrayList();
+
+ public FestcApplication() {
+ project = new Project();
+ }
+
+ public FestcGUI getGui() {
+ return gui;
+ }
+
+ public void init(FestcGUI gui) {
+ this.gui = gui;
+ MessageCenter.addMessageListener(new MessageEventListener() {
+ public void messageReceived(MessageEvent messageEvent) {
+ if (messageEvent.getLevel().equals(Level.ERROR)) {
+ FestcApplication.this.gui.showMessage("Error",
+ (messageEvent.getMessage() != null ? messageEvent.getMessage().toString() : "")
+ + ": "
+ + messageEvent.getThrowable().getMessage());
+ }
+ }
+ });
+
+ // String curdir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ // String usrhome = Constants.getProperty(Constants.USER_HOME, msg);
+ epicHome = Constants.getProperty(Constants.EPIC_HOME, msg);
+ workdir = Constants.getProperty(Constants.WORK_DIR, msg);
+ this.currentDir = new File(workdir + "/scenarios/scenariosInfo/");
+ this.infoDir = new File(workdir + "/scenarios/scenariosInfo/");
+ File logdir = new File(workdir + "/scenarios/scenariosInfo/logs");
+ if ( !logdir.exists())
+ logdir.mkdirs();
+ String allow = Constants.getProperty(Constants.ALLOW_DIFF_CHECK, msg);
+ allowDiffCheck = (allow != null && allow.equalsIgnoreCase("true")) ? true : false;
+ //System.out.println("Allow: " + allow + allowDiffCheck);
+ }
+
+ /**
+ * Gets the currently loaded Project.
+ *
+ * @return the currently loaded Project.
+ */
+ public Project getProject() {
+ return project;
+ }
+
+ /**
+ * Gets the currently browsed directory.
+ *
+ * @return the currently browsed directory.
+ */
+ public File getCurrentDir() {
+ return currentDir;
+ }
+
+ /**
+ * Sets the current directory for next browsing.
+ *
+ * @return the current directory.
+ */
+ public void setCurrentDir(File curdir) {
+ currentDir = curdir;
+ }
+
+ /***
+ * Gets the modeling year associated with the app
+ */
+
+// public String getSSimYear() {
+// return this.sSimYear;
+// }
+//
+// public void setSSimYear(String year) {
+// this.sSimYear = year;
+// }
+
+ /***
+ * Sets the fertilizer year associated with the app
+ */
+
+// public String getSFertYear() {
+// return this.sFertYear;
+// }
+//
+// public void setSFertYear(String year) {
+// this.sFertYear = year;
+// }
+
+ /***
+ * Sets the minimum crop acres associated with the app
+ */
+
+// public String getSMinAcre() {
+// return this.sMinAcre;
+// }
+//
+// public void setSMinAcre(String minAcre) {
+// this.sMinAcre = minAcre;
+// }
+
+ /**
+ * Exits the application.
+ *
+ * @return true if the exit was successful and the application should be
+ * terminated, otherwise false.
+ */
+ public boolean exit() {
+ //
+ return true;
+ }
+
+ public void valueChanged(ListSelectionEvent e) {
+ //
+ }
+
+ // listeners for the formula model
+ public void contentsChanged(ListDataEvent e) {
+ }
+
+ /**
+ * Shows help.
+ */
+ public void showHelp() {
+ String helpDir = System.getProperty("user.dir");
+ if (helpDir == null)
+ return;
+ helpDir = helpDir + "/help";
+ //String helpName1 = helpDir + "/userManualIndex.htm";
+ String helpName2 = helpDir + "/userManual.htm";
+ HelpWindowWithContents.showContents(null, "FEST-C User Guide",
+ null, helpName2);
+
+ //msg.warn("help: " + helpName1);
+ msg.warn("help: " + helpName2);
+ }
+
+ @Override
+ public void intervalAdded(ListDataEvent e) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void intervalRemoved(ListDataEvent e) {
+ // TODO Auto-generated method stub
+
+ }
+
+ /**
+ * Create a new project -- this is to create a new scenario from scratch.
+ *
+ */
+ public void createProject() {
+ new CustomDialog(this, gui.getFrame(), true, new DomainPanel(this),
+ Constants.NEW_SCENARIO, "Create a New Scenario", projFile);
+ }
+
+ /**
+ * Copy from an existing project -- This opens a dialog.
+ *
+ */
+ public void copyProject() {
+ new CustomDialog(this, gui.getFrame(), true, new CopyProjectPanel(this),
+ Constants.COPY_SCENARIO, "Copy from an Existing Scenario", projFile);
+ }
+
+ public void deleteProject() {
+ new CustomDialog(this, gui.getFrame(), true, new DeleteProjectPanel(this),
+ Constants.DELETE_SCENARIO, "Delete an Existing Scenario", projFile);
+ }
+
+ public static MessageCenter getMsg() {
+ return msg;
+ }
+
+ public File getProjFile() {
+ return projFile;
+ }
+
+ public String getEpicHome() {
+ return epicHome;
+ }
+
+ public String getWorkDir() {
+ return workdir;
+ }
+
+ public List getPlotListeners() {
+ return plotListeners;
+ }
+
+ /**
+ * Opens a saved project -- a set of text fields and combobox selections. This opens a
+ * file dialog.
+ */
+ public void openProject() {
+ if (projFile != null ) {
+// int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
+// if ( option == 0 )
+ saveProject();
+ }
+ File file = FileChooserUtilities.getOpenFile(infoDir);
+ openProject(file);
+ }
+
+ /**
+ * Opens the specified file as a project.
+ *
+ * @param file the project file
+ */
+ public void openProject(File file) {
+ if (file != null) {
+ try {
+ ProjectLoader projLoader = new ProjectLoader();
+ project = new Project();
+ projLoader.load(file, project);
+ projFile = file;
+ currentDir = file.getParentFile();
+ firePlotEvent(ProjectEvent.OPENED);
+ } catch (Exception e) {
+ msg.error("Error while loading project: ", e);
+ }
+ }
+ }
+
+ /**
+ * Saves the current project -- the current set of text fields and comboboxes.
+ * @throws Exception
+ */
+ public void saveProject() {
+ new CustomDialog(this, gui.getFrame(), true, new SaveProjectPanel(projFile), Constants.SAVE_SCENARIO, "Save Scenario", projFile);
+ }
+
+ /**
+ * Saves the current project as -- the current set of text fields and comboboxes.
+ */
+ public void saveProjectAs() {
+ File file = FileChooserUtilities.getSaveFile(currentDir);
+ //if (file != null) {
+ saveProj(file);
+ //}
+ }
+
+ private void saveProj(File file) {
+ if (file != null) {
+ firePlotEvent(ProjectEvent.SAVE);
+
+ try {
+ ProjectLoader projLoader = new ProjectLoader();
+ projLoader.save(file, project);
+ projFile = file;
+ currentDir = file.getParentFile();
+ } catch (Exception e) {
+ e.printStackTrace();
+ msg.error("Error while saving project", e);
+ }
+ }
+ }
+
+ public void showTab(String tabId) {
+ gui.setActive(tabId);
+ }
+
+ public static MessageCenter getMessageCenter() {
+ return msg;
+ }
+
+ public void addPlotListener(PlotEventListener listener) {
+ plotListeners.add(listener);
+ }
+
+ public void firePlotEvent(ProjectEvent event) {
+ for (PlotEventListener listener : plotListeners) {
+ if (event == ProjectEvent.CREATED)
+ listener.newProjectCreated();
+
+ if (event == ProjectEvent.OPENED)
+ listener.projectLoaded();
+
+ if (event == ProjectEvent.SAVE)
+ listener.saveProjectRequested();
+ }
+ }
+
+ public void showMessage(String title, String message) {
+ this.gui.showMessage(title, message);
+ }
+
+ @Override
+ public void onCall(String cmd, JPanel contentPanel) throws Exception {
+ if (cmd.equals(Constants.NEW_SCENARIO)) {
+
+ DomainPanel panel = (DomainPanel)contentPanel;
+ panel.validateFields();
+ String newScenario = panel.getScenaName();
+
+ projFile = new File(workdir + "/scenarios/scenariosInfo/", newScenario);
+ if ( projFile.isFile() )
+ throw new Exception("New scenario name already exist.");
+
+ DomainFields domain =(DomainFields) project.getPage(DomainFields.class.getCanonicalName());
+ if (domain == null ){
+ domain = new DomainFields();
+ project.addPage(domain);
+ }
+ domain.setGridName(panel.getGridName());
+ domain.setProj(panel.getProj4proj());
+
+ domain.setCols(panel.getCols());
+ domain.setRows(panel.getRows());
+ domain.setXcellSize(panel.getxSize());
+ domain.setYcellSize(panel.getySize());
+ domain.setXmin(panel.getXmin());
+ domain.setYmin(panel.getYmin());
+ domain.setSimYear(panel.getSimuYear());
+ domain.setNlcdYear(panel.getNlcdYear());
+ domain.setCMinAcres("0.0");
+ domain.setScenarioDir(workdir + "/scenarios/" + newScenario);
+
+ project.setName(newScenario);
+
+ /***
+ * NOTE: to populate all the domain info from newly created scenario,
+ * a new method newProjectCreated() is added to PlotEventListener interface.
+ */
+
+ firePlotEvent(ProjectEvent.CREATED);
+ saveProj(projFile);
+
+ newScenarioFold(newScenario, panel.getSimuYear());
+ System.out.println("Created New Scenario: " + newScenario);
+ }
+
+ if (cmd.equals(Constants.COPY_SCENARIO)) {
+ CopyProjectPanel panel = (CopyProjectPanel)contentPanel;
+ panel.validateFields();
+ String existScenNameWdir = panel.getExistScenario();
+ String newScenName = panel.getNewScenName();
+ File existScenFile = new File(existScenNameWdir);
+ //copyScenarioFold( existScenNameWdir, newScenName, panel.getSimuYear());
+ if ( ! existScenFile.isFile() )
+ throw new Exception("Scenario " + existScenNameWdir + " does not exist. " );
+
+ try {
+ openProject(existScenFile);
+ } catch (Exception e) {
+ msg.warn("Error copying scenario " + existScenNameWdir + ".", e.getMessage());
+ }
+ SiteInfoGenFields fields = (SiteInfoGenFields) project.getPage(SiteInfoGenFields.class.getCanonicalName());
+ DomainFields domain =(DomainFields) project.getPage(DomainFields.class.getCanonicalName());
+ if (domain == null ){
+ domain = new DomainFields();
+ project.addPage(domain);
+ }
+ domain.setGridName(fields.getGridName());
+ domain.setProj(fields.getProj());
+ domain.setCols(fields.getCols());
+ domain.setRows(fields.getRows());
+ domain.setXcellSize(fields.getXcellSize());
+ domain.setYcellSize(fields.getYcellSize());
+ domain.setXmin(fields.getXmin());
+ domain.setYmin(fields.getYmin());
+ domain.setScenarioDir(workdir + "/scenarios/" + newScenName);
+ domain.setSimYear(panel.getSimuYear());
+ // get default nlcd year from simulation year
+ domain.setNlcdYear();
+ domain.setCMinAcres(domain.getCMinAcres());
+ project.setName(newScenName);
+
+ projFile = new File(workdir + "/scenarios/scenariosInfo/", newScenName);
+ if ( projFile.isFile() )
+ throw new Exception("New scenario \"" + newScenName + "\" already exist.");
+
+ System.out.println("Creating Scenario: " + newScenName);
+ firePlotEvent(ProjectEvent.CREATED);
+ System.out.println("Saving Scenario: " + newScenName);
+ saveProj(projFile);
+ /***
+ * NOTE: We still need to copy all the files from the existing scenario folder to the new scenario folder
+ */
+ System.out.println("Coping Scenario: " + newScenName);
+ copyScenarioFold( existScenNameWdir, newScenName, panel.getSimuYear());
+ //System.out.println("Finished Coping Scenario: " + newScenName);
+ }
+
+ if (cmd.equals(Constants.DELETE_SCENARIO)) {
+ DeleteProjectPanel panel = (DeleteProjectPanel)contentPanel;
+ panel.validateFields();
+ String existScenName = panel.getExistScenario();
+
+ File existScenFile = new File(workdir + "/scenarios/scenariosInfo/", existScenName);
+ if ( ! existScenFile.isFile() )
+ throw new Exception("Scenario " + existScenName + " does not exist. " );
+ int option = JOptionPane.showConfirmDialog(null, "Confirm that you want to delete scenario: " + existScenName + "? ", "Confirmation", JOptionPane.YES_NO_OPTION);
+ if ( option == 0 )
+ deleteScenarioFold(existScenName);
+ }
+
+ if (cmd.equals(Constants.SAVE_SCENARIO)) {
+ if (projFile != null) {
+ firePlotEvent(ProjectEvent.SAVE);
+ saveProj(projFile);
+ }
+ }
+ }
+
+ private void deleteScenarioFold(String oldName) {
+ String file = workdir + "/scenarios/scenariosInfo/logs/delete_" +oldName + ".csh";
+ String scenFile = workdir + "/scenarios/scenariosInfo/" +oldName;
+ String oldScenDir = workdir + "/scenarios/" + oldName ;
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh -f" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to delete an existing scenario" + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
+ sb.append("# in support of the CMAS project, 2013" + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+ sb.append("rm -rf " + oldScenDir + ls);
+ sb.append("rm -f " + scenFile + ls);
+ try {
+ File script = new File(file);
+ Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ } catch (IOException e) {
+ msg.error("Error generating delete scenario script file", e);
+ return;
+ }
+
+ String log = file + ".log";
+ FileRunner.runScript(file, log, msg);
+
+ }
+
+ private void copyScenarioFold(String oldNameWdir, String newName, String year) {
+ Integer lIndex = oldNameWdir.lastIndexOf("/");
+ String oldName = oldNameWdir.substring(lIndex+1);
+ Integer sIndex = oldNameWdir.indexOf("scenarios");
+ String oldDir = oldNameWdir.substring(0, sIndex);
+ //System.out.printf(oldDir + " " + oldName);
+
+ String file = workdir + "/scenarios/scenariosInfo/logs/copyScenario_" + newName+ "_from_" +oldName + ".csh"; ;
+ String oldScenDir = oldDir + "/scenarios/" + oldName ;
+ String newScenDir = workdir + "/scenarios/" + newName ;
+ String commonDir = epicHome + "/common_data" ;
+
+ year = "2"+(Integer.parseInt(year)-1);
+
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh -f" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to copy all files from an existing scenario" + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
+ sb.append("# in support of the CMAS project, 2010" + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("setenv EPIC_DIR " +epicHome +ls );
+ sb.append("setenv SCEN_DIR " +newScenDir +ls );
+ sb.append("setenv COMM_DIR " +commonDir +ls + ls );
+ sb.append("#***************************************************************************************" + ls + ls);
+ sb.append("cp -R " + oldScenDir + " " + newScenDir + ls);
+ sb.append("sed -i '1s/^.\\{,8\\}/ " + year+ "/' $SCEN_DIR/share_data/EPICCONT.DAT" +ls ) ;
+
+ try {
+ File script = new File(file);
+ Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ } catch (IOException e) {
+ msg.error("Error generating copy scenario script file", e);
+ return;
+ }
+
+ String log = file + ".log";
+ FileRunner.runScript(file, log, msg);
+
+ }
+
+ private void newScenarioFold(String newName, String year) {
+ String file = workdir + "/scenarios/scenariosInfo/logs/createScenario_"+ newName + ".csh";
+ String newScenDir = workdir + "/scenarios/" + newName ;
+ String commonDir = epicHome + "/common_data" ;
+ year = "2"+(Integer.parseInt(year)-1);
+
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh " + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to copy all files from an existing scenario" + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
+ sb.append("# in support of the CMAS project, 2010" + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+ sb.append("setenv EPIC_DIR " +epicHome +ls );
+ sb.append("setenv SCEN_DIR " +newScenDir +ls );
+ sb.append("setenv COMM_DIR " +commonDir +ls + ls );
+
+ sb.append("# mkdir case dirs " +ls );
+ sb.append("mkdir -p $SCEN_DIR/share_data" +ls );
+ sb.append("mkdir -p $SCEN_DIR/scripts" +ls );
+ sb.append("mkdir -p $SCEN_DIR/work_dir" +ls );
+
+ String copyCmd = "cp $COMM_DIR/EPIC_model/app/EPICCONT.DAT $SCEN_DIR/share_data/." +ls;
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+ }
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage != null && !qSingModule.trim().isEmpty()) {
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + copyCmd);
+ } else {
+ sb.append(copyCmd);
+ }
+ sb.append("sed -i '1s/^.\\{,8\\}/ " + year+ "/' $SCEN_DIR/share_data/EPICCONT.DAT" +ls ) ;
+
+ try {
+ File script = new File(file);
+ Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ } catch (IOException e) {
+ msg.error("Error generating new scenario script file", e);
+ return;
+ }
+
+ String log = file + ".log";
+
+ FileRunner.runScript(file, log, msg);
+
+
+// msg.warn("Please modify " + newScenDir + "/share_data/EPICCONT.DAT ", "");
+ }
+
+ public boolean allowDiffCheck() {
+ return allowDiffCheck;
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/FestcConfigurator.java b/festc_core/src/gov/epa/festc/core/FestcConfigurator.java
index 60efbe8..6ff4395 100644
--- a/festc_core/src/gov/epa/festc/core/FestcConfigurator.java
+++ b/festc_core/src/gov/epa/festc/core/FestcConfigurator.java
@@ -1,303 +1,303 @@
-package gov.epa.festc.core;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Font;
-
-import javax.swing.Box;
-import javax.swing.BoxLayout;
-import javax.swing.JLabel;
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-import javax.swing.JTextField;
-import javax.swing.UIManager;
-
-import gov.epa.festc.gui.Beld4DataGenPanel;
-import gov.epa.festc.gui.CreateAppManFilesPanel;
-import gov.epa.festc.gui.CreateSiteFilesPanel;
-import gov.epa.festc.gui.CreateSiteInfoPanel;
-import gov.epa.festc.gui.CreateSoilFilesPanel;
-import gov.epa.festc.gui.CreateSpinupManFilesPanel;
-import gov.epa.festc.gui.Epic2CMAQPanel;
-import gov.epa.festc.gui.Epic2SWATPanel;
-import gov.epa.festc.gui.EpicRunAppPanel;
-import gov.epa.festc.gui.EpicSpinupPanel;
-import gov.epa.festc.gui.EpicYearlyAverage2CMAQPanel;
-import gov.epa.festc.gui.ManFileModPanel;
-import gov.epa.festc.gui.Mcip2EpicPanel;
-import gov.epa.festc.gui.ToolsPanel;
-import gov.epa.festc.gui.VisualizationPanel;
-import saf.core.ui.GUIBarManager;
-import saf.core.ui.IAppConfigurator;
-import saf.core.ui.ISAFDisplay;
-import saf.core.ui.IWindowCustomizer;
-import saf.core.ui.dock.DefaultDockableFrame;
-import saf.core.ui.dock.DefaultDockingManager;
-import saf.core.ui.dock.DockingManager.MinimizeLocation;
-
-/**
- * Application configurator for FEST-C.
- *
- *
The methods in this interface are called by the SAF application
- * initialization mechanism during points in the applications lifecycle. On
- * application start up, the order in which they are called is:
- *
- *
#preWindowOpen
- *
#createLayout
- *
#fillBars
- *
#postWindowOpen
- *
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-public class FestcConfigurator implements IAppConfigurator {
-
- private FestcApplication festcApp;
-
- private DefaultDockingManager DockingManager;
-// private int CLOSE = 1;
-// int MINIMIZE = 2;
-// int MAXIMIZE = 4;
-// int FLOAT = 8;
-
- /**
- * Creates a FestcConfigurator.
- *
- * @param appthe main FEST-C application object
- *
- */
- public FestcConfigurator(FestcApplication app) {
- festcApp = app;
- }
-
-
- /**
- * Creates the initial layout in the main application window. Typically,
- * implementors would add the initial application views here, setting up the
- * initial gui layout.
- *
- * @param DockingManager
- * the DockingManager used to create the initial layout
- */
- public void createLayout(DefaultDockingManager DockingManager) {
- this.DockingManager = DockingManager;
-
- ToolsPanel toolsPanel = new ToolsPanel(festcApp);
- DefaultDockableFrame activeview = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.TOOLS_VIEW,
- new JScrollPane(toolsPanel), MinimizeLocation.UNSPECIFIED, 4 );
- activeview.setTitle("Tools");
- activeview.setToolTip("Tools");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.TOOLS_GROUP, activeview);
-
- Beld4DataGenPanel beld4Gen = new Beld4DataGenPanel(festcApp);
- DefaultDockableFrame fview = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.BELD4_VIEW,
- new JScrollPane(beld4Gen),MinimizeLocation.UNSPECIFIED, 2|4|8 );
- fview.setTitle("Beld4 Data...");
- fview.setToolTip("BELD4 Data Generation");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, fview);
-
- CreateSiteInfoPanel siteInfo = new CreateSiteInfoPanel(festcApp);
- DefaultDockableFrame view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.SITE_INFO_VIEW,
- new JScrollPane(siteInfo), MinimizeLocation.UNSPECIFIED, 2|4|8);
- view.setTitle("Crop Site Info...");
- view.setToolTip("Site Utilities");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- Mcip2EpicPanel mcip2epic = new Mcip2EpicPanel(festcApp);
- JScrollPane pane = new JScrollPane(mcip2epic);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.MCIP2EPIC_VIEW, pane);
- view.setTitle("MCIP/CMAQ to EPIC");
- view.setToolTip("MCIP/CMAQ to EPIC");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- CreateSiteFilesPanel siteMan = new CreateSiteFilesPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.SITE_FILE_VIEW, new JScrollPane(siteMan));
- view.setTitle("EPIC Site file...");
- view.setToolTip("EPIC Site Utilities");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- CreateSoilFilesPanel soilMatchpanel = new CreateSoilFilesPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.GEN_SOIL_MAN_FILES_VIEW, new JScrollPane(soilMatchpanel));
- view.setTitle("EPIC Soil ...");
- view.setToolTip("EPIC Soil Utilities");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- CreateSpinupManFilesPanel manfilespinup = new CreateSpinupManFilesPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.MAN_FILE_SPINUP_VIEW, new JScrollPane(manfilespinup) );
- view.setTitle("Management Spinup...");
- view.setToolTip("Management File Generation for Spinup");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- ManFileModPanel managePanel = new ManFileModPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.MANAGE_VIEW, new JScrollPane(managePanel) );
- view.setTitle("View/Edit EPIC...");
- view.setToolTip("View/Edit EPIC Inputs");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- EpicSpinupPanel epicSuPanel = new EpicSpinupPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC_VIEW, new JScrollPane(epicSuPanel) );
- view.setTitle("EPIC Runs for Spinup");
- view.setToolTip("EPIC Runs for Spinup");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- EpicYearlyAverage2CMAQPanel epicYearlyAverage2cmaqPanel = new EpicYearlyAverage2CMAQPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC_YEARLY_AVERAGE2CMAQ_VIEW, new JScrollPane(epicYearlyAverage2cmaqPanel) );
- view.setTitle("EPIC Yearly Extraction"); //EPIC Yearly Ave. to CMAQ");
- view.setToolTip("EPIC Yearly Extraction"); //EPIC Yearly Ave. to CMAQ");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- CreateAppManFilesPanel manfileapp = new CreateAppManFilesPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.MAN_FILE_APP_VIEW, new JScrollPane(manfileapp) );
- view.setTitle("Management File...");
- view.setToolTip("Management File Generation for Application");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- EpicRunAppPanel epicrunapp = new EpicRunAppPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC4APP_VIEW, new JScrollPane(epicrunapp) );
- view.setTitle("EPIC Runs...");
- view.setToolTip("EPIC Runs for Application");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- Epic2CMAQPanel epic2cmaqPanel = new Epic2CMAQPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC2CMAQ_VIEW, new JScrollPane(epic2cmaqPanel) );
- view.setTitle("EPIC to CMAQ");
- view.setToolTip("EPIC to CMAQ");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- Epic2SWATPanel epic2swatPanel = new Epic2SWATPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC2SWAT_VIEW, new JScrollPane(epic2swatPanel) );
- view.setTitle("EPIC to SWAT");
- view.setToolTip("EPIC to SWAT");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
- VisualizationPanel visPanel = new VisualizationPanel(festcApp);
- view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.VISUALIZE_VIEW, new JScrollPane(visPanel) );
- view.setTitle("Visualization");
- view.setToolTip("Visualization");
- DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
-
-// Beld4DataGenPanel beld4Gen = new Beld4DataGenPanel(festcApp);
-// DefaultDockableFrame fview = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.BELD4_VIEW,
-// new JScrollPane(beld4Gen),MinimizeLocation.UNSPECIFIED, 2|4|8 );
-// fview.setTitle("Beld4 Data...");
-// fview.setToolTip("BELD4 Data Generation");
-// DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, fview);
-//
- festcApp.init(new FestcGUI(DockingManager));
- managePanel.setParent(festcApp.getGui());
- //epicSuPanel.setParent(festcApp.getGui());
- //System.out.println(activeview.getID());
- festcApp.showTab(fview.getID());
- toolsPanel.requestFocusInWindow();
- //DockingManager.setActiveDockable(fview.getID());
- }
-
- public void setStatusOneText(String text) {
- DockingManager.getBarManager().setStatusBarText("festc.status.one", text);
- }
-
- public void setStatusTwoText(String text) {
- DockingManager.getBarManager().setStatusBarText("festc.status.two", text);
- }
-
- /**
- * Optionally adds menu items and actions to the menu and tool bars. This
- * can be used to programmatically add tool bar and menus / menu items for
- * those that are not described in an xml plugin file.
- *
- * @param guiBarManager
- * the GUIBarManager used to configure tool and menu bars.
- */
- public void fillBars(GUIBarManager guiBarManager) {
- //DockingManager.createWindowMenu();
- JTextField fld = new JTextField();
- Font font = fld.getFont().deriveFont(Font.BOLD);
- guiBarManager.setStatusBarFont("festc.status.two", font);
- guiBarManager.setStatusBarFont("festc.status.one", font);
- guiBarManager.addToolBarComponent(FestcConstants.FORMULA_BAR_GROUP, "", Box.createHorizontalGlue());
-
- JPanel panel = new JPanel();
- panel.setLayout(new BoxLayout(panel, BoxLayout.X_AXIS));
- panel.add(new JLabel("Selected Formula:"));
- panel.add(Box.createRigidArea(new Dimension(5, 0)));
- JLabel label = new JLabel(" ");
- label.setForeground(Color.BLUE);
- label.setFont(label.getFont().deriveFont(Font.BOLD));
- panel.add(label);
- guiBarManager.addToolBarComponent(FestcConstants.FORMULA_BAR_GROUP, FestcConstants.FORMULA_LABEL, panel);
- guiBarManager.addToolBarComponent(FestcConstants.FORMULA_BAR_GROUP, "", Box
- .createRigidArea(new Dimension(10, 0)));
- }
-
- /**
- * Performs some arbitrary clean up type actions immediately prior to
- * closing the main application window.
- */
- public void postWindowClose() {
- }
-
- /**
- * Performs some arbitrary actions immediately after the main application
- * window has been open.
- *
- * @param display
- * the display representing the main application window.
- */
- public void postWindowOpen(ISAFDisplay display) {
- festcApp.getGui().setFrame(display.getFrame());
- }
-
- /**
- * Performs some arbitrary clean up type actions immediately prior to
- * closing the main application window. The calls the pave application to
- * determine whether the app should exit or not.
- *
- * @return true if the window can continue to close, false to veto the
- * window close.
- */
- public boolean preWindowClose() {
- if ( festcApp.getProjFile() != null ){
-// int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
-// if ( option == 0 )
- festcApp.saveProject();
- }
- return festcApp.exit();
- }
-
- /**
- * Performs some arbitrary actions prior to the main application window
- * opening. This can be setting the application's look and feel, using the
- * customizer parameter to set the initial window's size, title and so on.
- *
- * @param customizer
- * the customizer used to customize the initial application
- * window
- * @return true if the application should continue to open, or false to
- * close stop application initialization. Note that return false can
- * be a normal condition, such as a login failing.
- */
- public boolean preWindowOpen(IWindowCustomizer customizer) {
- try {
- String lf = UIManager.getSystemLookAndFeelClassName();
- if (lf.toLowerCase().contains("gtk"))
- lf = UIManager.getCrossPlatformLookAndFeelClassName();
- UIManager.setLookAndFeel(lf);
- } catch (Exception ex) {
- ex.printStackTrace();
- }
-
- //PlafManager.setPreferredTheme("repast.simphony", DockingManager.class.getResource("/saf/core/ui/saf-themes.xml"));
- customizer.useStoredFrameBounds(600, 600);
- customizer.useSavedLayout();
- customizer.setTitle(
- //"FEST-C"
- "Fertilizer Emission Scenario Tool for CMAQ (FEST-C v1.4)"
- );
- return true;
- }
-
-
-
-}
+package gov.epa.festc.core;
+
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.Font;
+
+import javax.swing.Box;
+import javax.swing.BoxLayout;
+import javax.swing.JLabel;
+import javax.swing.JOptionPane;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.JTextField;
+import javax.swing.UIManager;
+
+import gov.epa.festc.gui.Beld4DataGenPanel;
+import gov.epa.festc.gui.CreateAppManFilesPanel;
+import gov.epa.festc.gui.CreateSiteFilesPanel;
+import gov.epa.festc.gui.CreateSiteInfoPanel;
+import gov.epa.festc.gui.CreateSoilFilesPanel;
+import gov.epa.festc.gui.CreateSpinupManFilesPanel;
+import gov.epa.festc.gui.Epic2CMAQPanel;
+import gov.epa.festc.gui.Epic2SWATPanel;
+import gov.epa.festc.gui.EpicRunAppPanel;
+import gov.epa.festc.gui.EpicSpinupPanel;
+import gov.epa.festc.gui.EpicYearlyAverage2CMAQPanel;
+import gov.epa.festc.gui.ManFileModPanel;
+import gov.epa.festc.gui.Mcip2EpicPanel;
+import gov.epa.festc.gui.ToolsPanel;
+import gov.epa.festc.gui.VisualizationPanel;
+import saf.core.ui.GUIBarManager;
+import saf.core.ui.IAppConfigurator;
+import saf.core.ui.ISAFDisplay;
+import saf.core.ui.IWindowCustomizer;
+import saf.core.ui.dock.DefaultDockableFrame;
+import saf.core.ui.dock.DefaultDockingManager;
+import saf.core.ui.dock.DockingManager.MinimizeLocation;
+
+/**
+ * Application configurator for FEST-C.
+ *
+ *
The methods in this interface are called by the SAF application
+ * initialization mechanism during points in the applications lifecycle. On
+ * application start up, the order in which they are called is:
+ *
+ *
#preWindowOpen
+ *
#createLayout
+ *
#fillBars
+ *
#postWindowOpen
+ *
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+public class FestcConfigurator implements IAppConfigurator {
+
+ private FestcApplication festcApp;
+
+ private DefaultDockingManager DockingManager;
+// private int CLOSE = 1;
+// int MINIMIZE = 2;
+// int MAXIMIZE = 4;
+// int FLOAT = 8;
+
+ /**
+ * Creates a FestcConfigurator.
+ *
+ * @param appthe main FEST-C application object
+ *
+ */
+ public FestcConfigurator(FestcApplication app) {
+ festcApp = app;
+ }
+
+
+ /**
+ * Creates the initial layout in the main application window. Typically,
+ * implementors would add the initial application views here, setting up the
+ * initial gui layout.
+ *
+ * @param DockingManager
+ * the DockingManager used to create the initial layout
+ */
+ public void createLayout(DefaultDockingManager DockingManager) {
+ this.DockingManager = DockingManager;
+
+ ToolsPanel toolsPanel = new ToolsPanel(festcApp);
+ DefaultDockableFrame activeview = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.TOOLS_VIEW,
+ new JScrollPane(toolsPanel), MinimizeLocation.UNSPECIFIED, 4 );
+ activeview.setTitle("Tools");
+ activeview.setToolTip("Tools");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.TOOLS_GROUP, activeview);
+
+ Beld4DataGenPanel beld4Gen = new Beld4DataGenPanel(festcApp);
+ DefaultDockableFrame fview = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.BELD4_VIEW,
+ new JScrollPane(beld4Gen),MinimizeLocation.UNSPECIFIED, 2|4|8 );
+ fview.setTitle("Beld4 Data...");
+ fview.setToolTip("BELD4 Data Generation");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, fview);
+
+ CreateSiteInfoPanel siteInfo = new CreateSiteInfoPanel(festcApp);
+ DefaultDockableFrame view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.SITE_INFO_VIEW,
+ new JScrollPane(siteInfo), MinimizeLocation.UNSPECIFIED, 2|4|8);
+ view.setTitle("Crop Site Info...");
+ view.setToolTip("Site Utilities");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ Mcip2EpicPanel mcip2epic = new Mcip2EpicPanel(festcApp);
+ JScrollPane pane = new JScrollPane(mcip2epic);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.MCIP2EPIC_VIEW, pane);
+ view.setTitle("MCIP/CMAQ to EPIC");
+ view.setToolTip("MCIP/CMAQ to EPIC");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ CreateSiteFilesPanel siteMan = new CreateSiteFilesPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.SITE_FILE_VIEW, new JScrollPane(siteMan));
+ view.setTitle("EPIC Site file...");
+ view.setToolTip("EPIC Site Utilities");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ CreateSoilFilesPanel soilMatchpanel = new CreateSoilFilesPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.GEN_SOIL_MAN_FILES_VIEW, new JScrollPane(soilMatchpanel));
+ view.setTitle("EPIC Soil ...");
+ view.setToolTip("EPIC Soil Utilities");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ CreateSpinupManFilesPanel manfilespinup = new CreateSpinupManFilesPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.MAN_FILE_SPINUP_VIEW, new JScrollPane(manfilespinup) );
+ view.setTitle("Management Spinup...");
+ view.setToolTip("Management File Generation for Spinup");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ ManFileModPanel managePanel = new ManFileModPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.MANAGE_VIEW, new JScrollPane(managePanel) );
+ view.setTitle("View/Edit EPIC...");
+ view.setToolTip("View/Edit EPIC Inputs");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ EpicSpinupPanel epicSuPanel = new EpicSpinupPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC_VIEW, new JScrollPane(epicSuPanel) );
+ view.setTitle("EPIC Runs for Spinup");
+ view.setToolTip("EPIC Runs for Spinup");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ EpicYearlyAverage2CMAQPanel epicYearlyAverage2cmaqPanel = new EpicYearlyAverage2CMAQPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC_YEARLY_AVERAGE2CMAQ_VIEW, new JScrollPane(epicYearlyAverage2cmaqPanel) );
+ view.setTitle("EPIC Yearly Extraction"); //EPIC Yearly Ave. to CMAQ");
+ view.setToolTip("EPIC Yearly Extraction"); //EPIC Yearly Ave. to CMAQ");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ CreateAppManFilesPanel manfileapp = new CreateAppManFilesPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.MAN_FILE_APP_VIEW, new JScrollPane(manfileapp) );
+ view.setTitle("Management File...");
+ view.setToolTip("Management File Generation for Application");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ EpicRunAppPanel epicrunapp = new EpicRunAppPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC4APP_VIEW, new JScrollPane(epicrunapp) );
+ view.setTitle("EPIC Runs...");
+ view.setToolTip("EPIC Runs for Application");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ Epic2CMAQPanel epic2cmaqPanel = new Epic2CMAQPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC2CMAQ_VIEW, new JScrollPane(epic2cmaqPanel) );
+ view.setTitle("EPIC to CMAQ");
+ view.setToolTip("EPIC to CMAQ");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ Epic2SWATPanel epic2swatPanel = new Epic2SWATPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.EPIC2SWAT_VIEW, new JScrollPane(epic2swatPanel) );
+ view.setTitle("EPIC to SWAT");
+ view.setToolTip("EPIC to SWAT");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+ VisualizationPanel visPanel = new VisualizationPanel(festcApp);
+ view = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.VISUALIZE_VIEW, new JScrollPane(visPanel) );
+ view.setTitle("Visualization");
+ view.setToolTip("Visualization");
+ DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, view);
+
+// Beld4DataGenPanel beld4Gen = new Beld4DataGenPanel(festcApp);
+// DefaultDockableFrame fview = (DefaultDockableFrame) DockingManager.createDockable(FestcConstants.BELD4_VIEW,
+// new JScrollPane(beld4Gen),MinimizeLocation.UNSPECIFIED, 2|4|8 );
+// fview.setTitle("Beld4 Data...");
+// fview.setToolTip("BELD4 Data Generation");
+// DockingManager.addDockableToGroup(FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID, fview);
+//
+ festcApp.init(new FestcGUI(DockingManager));
+ managePanel.setParent(festcApp.getGui());
+ //epicSuPanel.setParent(festcApp.getGui());
+ //System.out.println(activeview.getID());
+ festcApp.showTab(fview.getID());
+ toolsPanel.requestFocusInWindow();
+ //DockingManager.setActiveDockable(fview.getID());
+ }
+
+ public void setStatusOneText(String text) {
+ DockingManager.getBarManager().setStatusBarText("festc.status.one", text);
+ }
+
+ public void setStatusTwoText(String text) {
+ DockingManager.getBarManager().setStatusBarText("festc.status.two", text);
+ }
+
+ /**
+ * Optionally adds menu items and actions to the menu and tool bars. This
+ * can be used to programmatically add tool bar and menus / menu items for
+ * those that are not described in an xml plugin file.
+ *
+ * @param guiBarManager
+ * the GUIBarManager used to configure tool and menu bars.
+ */
+ public void fillBars(GUIBarManager guiBarManager) {
+ //DockingManager.createWindowMenu();
+ JTextField fld = new JTextField();
+ Font font = fld.getFont().deriveFont(Font.BOLD);
+ guiBarManager.setStatusBarFont("festc.status.two", font);
+ guiBarManager.setStatusBarFont("festc.status.one", font);
+ guiBarManager.addToolBarComponent(FestcConstants.FORMULA_BAR_GROUP, "", Box.createHorizontalGlue());
+
+ JPanel panel = new JPanel();
+ panel.setLayout(new BoxLayout(panel, BoxLayout.X_AXIS));
+ panel.add(new JLabel("Selected Formula:"));
+ panel.add(Box.createRigidArea(new Dimension(5, 0)));
+ JLabel label = new JLabel(" ");
+ label.setForeground(Color.BLUE);
+ label.setFont(label.getFont().deriveFont(Font.BOLD));
+ panel.add(label);
+ guiBarManager.addToolBarComponent(FestcConstants.FORMULA_BAR_GROUP, FestcConstants.FORMULA_LABEL, panel);
+ guiBarManager.addToolBarComponent(FestcConstants.FORMULA_BAR_GROUP, "", Box
+ .createRigidArea(new Dimension(10, 0)));
+ }
+
+ /**
+ * Performs some arbitrary clean up type actions immediately prior to
+ * closing the main application window.
+ */
+ public void postWindowClose() {
+ }
+
+ /**
+ * Performs some arbitrary actions immediately after the main application
+ * window has been open.
+ *
+ * @param display
+ * the display representing the main application window.
+ */
+ public void postWindowOpen(ISAFDisplay display) {
+ festcApp.getGui().setFrame(display.getFrame());
+ }
+
+ /**
+ * Performs some arbitrary clean up type actions immediately prior to
+ * closing the main application window. The calls the pave application to
+ * determine whether the app should exit or not.
+ *
+ * @return true if the window can continue to close, false to veto the
+ * window close.
+ */
+ public boolean preWindowClose() {
+ if ( festcApp.getProjFile() != null ){
+// int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
+// if ( option == 0 )
+ festcApp.saveProject();
+ }
+ return festcApp.exit();
+ }
+
+ /**
+ * Performs some arbitrary actions prior to the main application window
+ * opening. This can be setting the application's look and feel, using the
+ * customizer parameter to set the initial window's size, title and so on.
+ *
+ * @param customizer
+ * the customizer used to customize the initial application
+ * window
+ * @return true if the application should continue to open, or false to
+ * close stop application initialization. Note that return false can
+ * be a normal condition, such as a login failing.
+ */
+ public boolean preWindowOpen(IWindowCustomizer customizer) {
+ try {
+ String lf = UIManager.getSystemLookAndFeelClassName();
+ if (lf.toLowerCase().contains("gtk"))
+ lf = UIManager.getCrossPlatformLookAndFeelClassName();
+ UIManager.setLookAndFeel(lf);
+ } catch (Exception ex) {
+ ex.printStackTrace();
+ }
+
+ //PlafManager.setPreferredTheme("repast.simphony", DockingManager.class.getResource("/saf/core/ui/saf-themes.xml"));
+ customizer.useStoredFrameBounds(600, 600);
+ customizer.useSavedLayout();
+ customizer.setTitle(
+ //"FEST-C"
+ "Fertilizer Emission Scenario Tool for CMAQ (FEST-C v2.1)"
+ );
+ return true;
+ }
+
+
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/FestcConstants.java b/festc_core/src/gov/epa/festc/core/FestcConstants.java
index e7b4f46..4c0e203 100644
--- a/festc_core/src/gov/epa/festc/core/FestcConstants.java
+++ b/festc_core/src/gov/epa/festc/core/FestcConstants.java
@@ -1,35 +1,35 @@
-package gov.epa.festc.core;
-
-/**
- * Constants used by the FEST-C application
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-public interface FestcConstants {
- String MAIN_GROUP_ID = "gov.epa.festc.core.main_group";
- String DATASET_VIEW = "gov.epa.festc.core.dataset_view";
- String PERSPECTIVE_ID = "gov.epa.festc.core.perspective_one";
- String TOOLS_GROUP = "gov.epa.festc.core.tools_group";
- String FORMULA_VIEW = "gov.epa.festc.core.formula_view";
- String BELD4_VIEW = "gov.epa.festc.core.landuse_view";
- String MCIP2EPIC_VIEW = "gov.epa.festc.core.mcip2epic_view";
- String SITE_INFO_VIEW = "gov.epa.festc.core.siteinfo_gen_view";
- String SITE_FILE_VIEW = "gov.epa.festc.core.siteinfo_file_view";
- String GEN_SOIL_MAN_FILES_VIEW = "gov.epa.festc.core.gen_soil_man_files_view";
- String MAN_FILE_SPINUP_VIEW = "gov.epa.festc.core.man_file_spinup_view";
- String MAN_FILE_APP_VIEW = "gov.epa.festc.core.man_file_app_view";
- String EPIC4APP_VIEW = "gov.epa.festc.core.epic4app_view";
- String TOOLS_VIEW = "gov.epa.festc.core.tools_view";
- String MANAGE_VIEW = "gov.epa.festc.core.manage_view";
- String FORMULA_BAR_GROUP = "gov.epa.festc.core.bar.formula_group";
- String FORMULA_LABEL = "gov.epa.festc.core.bar.formula_label";
- String APP_LOG_FILE = System.getProperty("user.home") + "/festc/velocity.log";
- String OUTPUT_LOG_FILR = System.getProperty("user.home") + "/festc/festc.log";
- String EPIC_VIEW = "gov.epa.festc.core.epic_view";
- String PROCESS_EPIC_SPINUP_VIEW = "gov.epa.festc.core.proc_spinup_view";
- String EPIC2CMAQ_VIEW = "gov.epa.festc.core.epic2cmaq_view";
- String EPIC2SWAT_VIEW = "gov.epa.festc.core.epic2swat_view";
- String EPIC_YEARLY_AVERAGE2CMAQ_VIEW = "gov.epa.festc.core.epic_yearly_average2cmaq_view";
- String VISUALIZE_VIEW = "gov.epa.festc.core.visualize_view";
-}
+package gov.epa.festc.core;
+
+/**
+ * Constants used by the FEST-C application
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+public interface FestcConstants {
+ String MAIN_GROUP_ID = "gov.epa.festc.core.main_group";
+ String DATASET_VIEW = "gov.epa.festc.core.dataset_view";
+ String PERSPECTIVE_ID = "gov.epa.festc.core.perspective_one";
+ String TOOLS_GROUP = "gov.epa.festc.core.tools_group";
+ String FORMULA_VIEW = "gov.epa.festc.core.formula_view";
+ String BELD4_VIEW = "gov.epa.festc.core.landuse_view";
+ String MCIP2EPIC_VIEW = "gov.epa.festc.core.mcip2epic_view";
+ String SITE_INFO_VIEW = "gov.epa.festc.core.siteinfo_gen_view";
+ String SITE_FILE_VIEW = "gov.epa.festc.core.siteinfo_file_view";
+ String GEN_SOIL_MAN_FILES_VIEW = "gov.epa.festc.core.gen_soil_man_files_view";
+ String MAN_FILE_SPINUP_VIEW = "gov.epa.festc.core.man_file_spinup_view";
+ String MAN_FILE_APP_VIEW = "gov.epa.festc.core.man_file_app_view";
+ String EPIC4APP_VIEW = "gov.epa.festc.core.epic4app_view";
+ String TOOLS_VIEW = "gov.epa.festc.core.tools_view";
+ String MANAGE_VIEW = "gov.epa.festc.core.manage_view";
+ String FORMULA_BAR_GROUP = "gov.epa.festc.core.bar.formula_group";
+ String FORMULA_LABEL = "gov.epa.festc.core.bar.formula_label";
+ String APP_LOG_FILE = System.getProperty("user.home") + "/festc/velocity.log";
+ String OUTPUT_LOG_FILR = System.getProperty("user.home") + "/festc/festc.log";
+ String EPIC_VIEW = "gov.epa.festc.core.epic_view";
+ String PROCESS_EPIC_SPINUP_VIEW = "gov.epa.festc.core.proc_spinup_view";
+ String EPIC2CMAQ_VIEW = "gov.epa.festc.core.epic2cmaq_view";
+ String EPIC2SWAT_VIEW = "gov.epa.festc.core.epic2swat_view";
+ String EPIC_YEARLY_AVERAGE2CMAQ_VIEW = "gov.epa.festc.core.epic_yearly_average2cmaq_view";
+ String VISUALIZE_VIEW = "gov.epa.festc.core.visualize_view";
+}
diff --git a/festc_core/src/gov/epa/festc/core/FestcGUI.java b/festc_core/src/gov/epa/festc/core/FestcGUI.java
index 08336ff..f870f9b 100644
--- a/festc_core/src/gov/epa/festc/core/FestcGUI.java
+++ b/festc_core/src/gov/epa/festc/core/FestcGUI.java
@@ -1,240 +1,242 @@
-package gov.epa.festc.core;
-
-import java.awt.Image;
-import java.awt.Toolkit;
-import java.awt.event.WindowListener;
-import java.util.ArrayList;
-import java.util.Date;
-
-import javax.swing.JFrame;
-import javax.swing.JOptionPane;
-
-import com.sun.glass.events.ViewEvent;
-
-import saf.core.ui.dock.DefaultDockingManager;
-import saf.core.ui.dock.DockableFrame;
-import saf.core.ui.dock.DockingManager;
-import saf.core.ui.event.DockableFrameEvent;
-import saf.core.ui.event.DockableFrameListener;
-import simphony.util.messages.MessageCenter;
-
-/**
- * Facade for gui related application operations.
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-public class FestcGUI implements DockableFrameListener {
-
- private static final MessageCenter ctr = MessageCenter
- .getMessageCenter(FestcGUI.class);
-
- private DefaultDockingManager viewManager;
- private JFrame frame;
- private java.util.List viewList = new ArrayList();
- private java.util.List framesToDisplay = new ArrayList();
-
- public FestcGUI(DefaultDockingManager viewManager) {
- this.viewManager = viewManager;
- }
-
- public void undockAllPlots() {
- java.util.List views = viewManager.getDockableFrames(
- FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID);
- for (DockableFrame view : views) {
- view.doFloat();
- }
- }
-
- public void setStatusTwoText(String text) {
- viewManager.getBarManager().setStatusBarText("festc.status.two", text);
- }
-
- public void setStatusOneText(String text) {
- viewManager.getBarManager().setStatusBarText("festc.status.one", text);
- }
-
- public JFrame getFrame() {
- return frame;
- }
-
- public void setFrame(JFrame frame) {
- this.frame = frame;
- Image image = Toolkit.getDefaultToolkit().getImage(getClass().getResource("/epa_logo.JPG"));
- this.frame.setIconImage(image);
-
- for (JFrame f : framesToDisplay) {
- f.setLocationRelativeTo(FestcGUI.this.frame);
- f.setVisible(true);
- }
- framesToDisplay.clear();
- }
-
- public DockingManager getViewManager() {
- return viewManager;
- }
-
- public void showMessage(String title, String message) {
- JOptionPane.showMessageDialog(frame, message, title,
- JOptionPane.INFORMATION_MESSAGE);
- }
-
- public boolean askMessage(String title, String message) {
- return JOptionPane.showConfirmDialog(frame, message + ". Continue?",
- title, JOptionPane.YES_NO_OPTION) == JOptionPane.YES_OPTION;
- }
-
- /**
- * Invoked when a view is closed.
- *
- * @param evt
- */
-
- public void viewClosed(ViewEvent evt) {
- ctr.info("View closed at: ", new Date());
- }
-
- /**
- * Invoked when a view receives a float request. The float can be overriden
- * by setting the events handled property to true.
- *
- * @param evt
- * details the float request
- */
- public void floatRequested(ViewEvent evt) {
- }
-
- /**
- * Invoked when a view receives a restore request. The restore can be
- * overriden by setting the events handled property to true.
- *
- * @param evt
- * details the restore request
- */
- public void restoreRequested(ViewEvent evt) {
- }
-
- /**
- * Invoked when a user attempts to close a view. The close can be overriden
- * by setting the events handled property to true.
- *
- * @param evt
- * the event describing the view etc.
- */
- public void closeRequested(ViewEvent evt) {
- }
-
- /**
- * Invoked when a view is floated.
- *
- * @param evt
- */
- public void viewFloated(ViewEvent evt) {
- //
- }
-
- /**
- * Invoked when a view is maximized.
- *
- * @param evt
- */
- public void viewMaximized(ViewEvent evt) {
- // todo implement method
- }
-
- /**
- * Invoked when a view is minimized.
- *
- * @param evt
- */
- public void viewMinimized(ViewEvent evt) {
- // todo implement method
- }
-
- /**
- * Invoked when a view is restored to its default docking position from a
- * floated, minimized, or maximized state.
- *
- * @param evt
- */
- public void viewRestored(ViewEvent evt) {
- }
-
- /**
- * Returns the list of open plot view ids
- *
- * @return ArrayList
- */
- public java.util.List getViewList() {
- return viewList;
- }
-
- public void setActive(String tabId) {
- viewManager.setActiveDockable(tabId);
- }
-
- public void refreshViews() {
-
- }
-
- @Override
- public void dockableClosed(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableClosing(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableFloating(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableRestoring(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableMinimizing(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableMinimized(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableFloated(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableMaximizing(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableMaximized(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void dockableRestored(DockableFrameEvent evt) {
- // TODO Auto-generated method stub
-
- }
-
-}
+package gov.epa.festc.core;
+
+import java.awt.Image;
+import java.awt.Toolkit;
+import java.awt.event.WindowListener;
+import java.util.ArrayList;
+import java.util.Date;
+
+import javax.swing.JFrame;
+import javax.swing.JOptionPane;
+
+import javafx.event.Event;
+
+//import com.sun.glass.events.ViewEvent;
+
+import saf.core.ui.dock.DefaultDockingManager;
+import saf.core.ui.dock.DockableFrame;
+import saf.core.ui.dock.DockingManager;
+import saf.core.ui.event.DockableFrameEvent;
+import saf.core.ui.event.DockableFrameListener;
+import simphony.util.messages.MessageCenter;
+
+/**
+ * Facade for gui related application operations.
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+public class FestcGUI implements DockableFrameListener {
+
+ private static final MessageCenter ctr = MessageCenter
+ .getMessageCenter(FestcGUI.class);
+
+ private DefaultDockingManager viewManager;
+ private JFrame frame;
+ private java.util.List viewList = new ArrayList();
+ private java.util.List framesToDisplay = new ArrayList();
+
+ public FestcGUI(DefaultDockingManager viewManager) {
+ this.viewManager = viewManager;
+ }
+
+ public void undockAllPlots() {
+ java.util.List views = viewManager.getDockableFrames(
+ FestcConstants.PERSPECTIVE_ID, FestcConstants.MAIN_GROUP_ID);
+ for (DockableFrame view : views) {
+ view.doFloat();
+ }
+ }
+
+ public void setStatusTwoText(String text) {
+ viewManager.getBarManager().setStatusBarText("festc.status.two", text);
+ }
+
+ public void setStatusOneText(String text) {
+ viewManager.getBarManager().setStatusBarText("festc.status.one", text);
+ }
+
+ public JFrame getFrame() {
+ return frame;
+ }
+
+ public void setFrame(JFrame frame) {
+ this.frame = frame;
+ Image image = Toolkit.getDefaultToolkit().getImage(getClass().getResource("/epa_logo.JPG"));
+ this.frame.setIconImage(image);
+
+ for (JFrame f : framesToDisplay) {
+ f.setLocationRelativeTo(FestcGUI.this.frame);
+ f.setVisible(true);
+ }
+ framesToDisplay.clear();
+ }
+
+ public DockingManager getViewManager() {
+ return viewManager;
+ }
+
+ public void showMessage(String title, String message) {
+ JOptionPane.showMessageDialog(frame, message, title,
+ JOptionPane.INFORMATION_MESSAGE);
+ }
+
+ public boolean askMessage(String title, String message) {
+ return JOptionPane.showConfirmDialog(frame, message + ". Continue?",
+ title, JOptionPane.YES_NO_OPTION) == JOptionPane.YES_OPTION;
+ }
+
+ /**
+ * Invoked when a view is closed.
+ *
+ * @param evt
+ */
+
+ public void viewClosed(Event evt) {
+ ctr.info("View closed at: ", new Date());
+ }
+
+ /**
+ * Invoked when a view receives a float request. The float can be overriden
+ * by setting the events handled property to true.
+ *
+ * @param evt
+ * details the float request
+ */
+ public void floatRequested(Event evt) {
+ }
+
+ /**
+ * Invoked when a view receives a restore request. The restore can be
+ * overriden by setting the events handled property to true.
+ *
+ * @param evt
+ * details the restore request
+ */
+ public void restoreRequested(Event evt) {
+ }
+
+ /**
+ * Invoked when a user attempts to close a view. The close can be overriden
+ * by setting the events handled property to true.
+ *
+ * @param evt
+ * the event describing the view etc.
+ */
+ public void closeRequested(Event evt) {
+ }
+
+ /**
+ * Invoked when a view is floated.
+ *
+ * @param evt
+ */
+ public void viewFloated(Event evt) {
+ //
+ }
+
+ /**
+ * Invoked when a view is maximized.
+ *
+ * @param evt
+ */
+ public void viewMaximized(Event evt) {
+ // todo implement method
+ }
+
+ /**
+ * Invoked when a view is minimized.
+ *
+ * @param evt
+ */
+ public void viewMinimized(Event evt) {
+ // todo implement method
+ }
+
+ /**
+ * Invoked when a view is restored to its default docking position from a
+ * floated, minimized, or maximized state.
+ *
+ * @param evt
+ */
+ public void viewRestored(Event evt) {
+ }
+
+ /**
+ * Returns the list of open plot view ids
+ *
+ * @return ArrayList
+ */
+ public java.util.List getViewList() {
+ return viewList;
+ }
+
+ public void setActive(String tabId) {
+ viewManager.setActiveDockable(tabId);
+ }
+
+ public void refreshViews() {
+
+ }
+
+ @Override
+ public void dockableClosed(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableClosing(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableFloating(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableRestoring(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableMinimizing(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableMinimized(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableFloated(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableMaximizing(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableMaximized(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void dockableRestored(DockableFrameEvent evt) {
+ // TODO Auto-generated method stub
+
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/FestcPlugin.java b/festc_core/src/gov/epa/festc/core/FestcPlugin.java
index bd268c7..9e303a9 100644
--- a/festc_core/src/gov/epa/festc/core/FestcPlugin.java
+++ b/festc_core/src/gov/epa/festc/core/FestcPlugin.java
@@ -1,54 +1,54 @@
-package gov.epa.festc.core;
-
-import java.util.Properties;
-
-import org.apache.velocity.app.Velocity;
-import org.java.plugin.Plugin;
-import org.java.plugin.PluginLifecycleException;
-
-import saf.core.runtime.IApplicationRunnable;
-import saf.core.ui.GUICreator;
-import saf.core.ui.IAppConfigurator;
-import saf.core.ui.ISAFDisplay;
-import saf.core.ui.Workspace;
-import simphony.util.messages.MessageCenter;
-
-public class FestcPlugin extends Plugin implements IApplicationRunnable {
-
- @Override
- protected void doStart() throws Exception {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- protected void doStop() throws Exception {
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public void run(String[] arg0) {
- try {
- // initialize velocity
- Properties p = new Properties();
- p.setProperty("resource.loader", "class");
- p.setProperty("class.resource.loader.class",
- "org.apache.velocity.runtime.resource.loader.ClasspathResourceLoader");
-
- p.setProperty("runtime.log", FestcConstants.APP_LOG_FILE);
- Velocity.init(p);
-
- // The typical pattern for a SAF application is followed below.
- FestcApplication festc = new FestcApplication();
- IAppConfigurator configurator = new FestcConfigurator(festc);
- Workspace workspace = new Workspace(festc);
- ISAFDisplay display = GUICreator.createDisplay(configurator, workspace);
-
- GUICreator.runDisplay(configurator, display);
- } catch (Exception ex) {
- MessageCenter.getMessageCenter(getClass()).error("Error", ex);
- }
- }
-
-}
+package gov.epa.festc.core;
+
+import java.util.Properties;
+
+import org.apache.velocity.app.Velocity;
+import org.java.plugin.Plugin;
+import org.java.plugin.PluginLifecycleException;
+
+import saf.core.runtime.IApplicationRunnable;
+import saf.core.ui.GUICreator;
+import saf.core.ui.IAppConfigurator;
+import saf.core.ui.ISAFDisplay;
+import saf.core.ui.Workspace;
+import simphony.util.messages.MessageCenter;
+
+public class FestcPlugin extends Plugin implements IApplicationRunnable {
+
+ @Override
+ protected void doStart() throws Exception {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ protected void doStop() throws Exception {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void run(String[] arg0) {
+ try {
+ // initialize velocity
+ Properties p = new Properties();
+ p.setProperty("resource.loader", "class");
+ p.setProperty("class.resource.loader.class",
+ "org.apache.velocity.runtime.resource.loader.ClasspathResourceLoader");
+
+ p.setProperty("runtime.log", FestcConstants.APP_LOG_FILE);
+ Velocity.init(p);
+
+ // The typical pattern for a SAF application is followed below.
+ FestcApplication festc = new FestcApplication();
+ IAppConfigurator configurator = new FestcConfigurator(festc);
+ Workspace workspace = new Workspace(festc);
+ ISAFDisplay display = GUICreator.createDisplay(configurator, workspace);
+
+ GUICreator.runDisplay(configurator, display);
+ } catch (Exception ex) {
+ MessageCenter.getMessageCenter(getClass()).error("Error", ex);
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/Project.java b/festc_core/src/gov/epa/festc/core/Project.java
index f9aba6a..1df2833 100644
--- a/festc_core/src/gov/epa/festc/core/Project.java
+++ b/festc_core/src/gov/epa/festc/core/Project.java
@@ -1,68 +1,68 @@
-package gov.epa.festc.core;
-
-import gov.epa.festc.core.proj.PageFields;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.xml.bind.annotation.XmlElementRef;
-import javax.xml.bind.annotation.XmlRootElement;
-
-
-/**
- * FESTC scenario's data collection.
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-
-//This statement means that class "Project.java" is the root-element of our java object to xml mapping
-@XmlRootElement(namespace = "gov.epa.festc.core")
-public class Project {
- List pageList;
-
- String name;
-
-
- public String getName() {
- return name;
- }
-
- public void setName(String name) {
- this.name = name;
- }
-
- public Project() {
- pageList = new ArrayList();
- }
-
- public void addPage(PageFields page) {
- pageList.add(page);
- //System.out.print("Add field:" +page.getName() + "\n");
-
- }
-
- public PageFields getPage(String name) {
- if (name == null || name.trim().length() == 0)
- return null;
-
- for (PageFields page : pageList) {
- if (page.getName() != null && page.getName().equalsIgnoreCase(name)){
- //System.out.print("field:" +page.getName() + "\n");
- return page;
- }
- }
-
- return null;
- }
-
- @XmlElementRef
- public List getPageList() {
- return pageList;
- }
-
- public void setPageList(List pageList) {
- this.pageList = pageList;
- }
-
-}
+package gov.epa.festc.core;
+
+import gov.epa.festc.core.proj.PageFields;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import javax.xml.bind.annotation.XmlElementRef;
+import javax.xml.bind.annotation.XmlRootElement;
+
+
+/**
+ * FESTC scenario's data collection.
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+
+//This statement means that class "Project.java" is the root-element of our java object to xml mapping
+@XmlRootElement(namespace = "gov.epa.festc.core")
+public class Project {
+ List pageList;
+
+ String name;
+
+
+ public String getName() {
+ return name;
+ }
+
+ public void setName(String name) {
+ this.name = name;
+ }
+
+ public Project() {
+ pageList = new ArrayList();
+ }
+
+ public void addPage(PageFields page) {
+ pageList.add(page);
+ //System.out.print("Add field:" +page.getName() + "\n");
+
+ }
+
+ public PageFields getPage(String name) {
+ if (name == null || name.trim().length() == 0)
+ return null;
+
+ for (PageFields page : pageList) {
+ if (page.getName() != null && page.getName().equalsIgnoreCase(name)){
+ //System.out.print("field:" +page.getName() + "\n");
+ return page;
+ }
+ }
+
+ return null;
+ }
+
+ @XmlElementRef
+ public List getPageList() {
+ return pageList;
+ }
+
+ public void setPageList(List pageList) {
+ this.pageList = pageList;
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/VersionInfo.java b/festc_core/src/gov/epa/festc/core/VersionInfo.java
index a8cdd64..1871651 100644
--- a/festc_core/src/gov/epa/festc/core/VersionInfo.java
+++ b/festc_core/src/gov/epa/festc/core/VersionInfo.java
@@ -1,19 +1,19 @@
-package gov.epa.festc.core;
-
-/**
- * NOTE: Auto-generated file. Please don't try to change.
- * @version $Revision$ $Date$
- */
-public class VersionInfo {
- public static final String version = "1.3";
- public static final String date = "2018-10-17";
-
- public static String getVersion() {
- return version;
- }
-
- public static String getDate() {
- return date;
- }
-
+package gov.epa.festc.core;
+
+/**
+ * NOTE: Auto-generated file. Please don't try to change.
+ * @version $Revision$ $Date$
+ */
+public class VersionInfo {
+ public static final String version = "2.1";
+ public static final String date = "2025-05-05";
+
+ public static String getVersion() {
+ return version;
+ }
+
+ public static String getDate() {
+ return date;
+ }
+
}
\ No newline at end of file
diff --git a/festc_core/src/gov/epa/festc/core/WriteVersionInfo.java b/festc_core/src/gov/epa/festc/core/WriteVersionInfo.java
index 1db57b4..0efc288 100644
--- a/festc_core/src/gov/epa/festc/core/WriteVersionInfo.java
+++ b/festc_core/src/gov/epa/festc/core/WriteVersionInfo.java
@@ -1,44 +1,44 @@
-package gov.epa.festc.core;
-
-import java.io.File;
-import java.io.FileWriter;
-import java.io.IOException;
-import java.sql.Date;
-
-public class WriteVersionInfo {
- private static String version = "1.3";
- private static String timestamp = new Date(new java.util.Date().getTime()).toString(); //in the yyyy-mm-dd format
- private static String ls = System.getProperty("line.separator");
-
- /**
- * @param args
- */
- public static void main(String[] args) {
- String versionInfoClass = "package gov.epa.festc.core;" + ls + ls
- + "/**" + ls
- + " * NOTE: Auto-generated file. Please don't try to change." + ls
- + " * @version $Revision$ $Date$" + ls
- + " */" + ls
- + "public class VersionInfo {" + ls
- + " public static final String version = \"" + version + "\";" + ls
- + " public static final String date = \"" + timestamp + "\";" + ls + ls
- + " public static String getVersion() {" + ls
- + " return version;" + ls
- + " }" + ls + ls
- + " public static String getDate() {" + ls
- + " return date;" + ls
- + " }" + ls + ls
- + "}";
-
- File file = new File(System.getProperty("user.dir") + "/../festc_core/src/gov/epa/festc/core/VersionInfo.java");
-
- try {
- FileWriter writer = new FileWriter(file);
- writer.write(versionInfoClass);
- writer.close();
- } catch (IOException e) {
- System.out.println("Error writting VersionInfo.java file. " + e.getMessage());
- }
- }
-
-}
+package gov.epa.festc.core;
+
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.sql.Date;
+
+public class WriteVersionInfo {
+ private static String version = "2.1";
+ private static String timestamp = new Date(new java.util.Date().getTime()).toString(); //in the yyyy-mm-dd format
+ private static String ls = System.getProperty("line.separator");
+
+ /**
+ * @param args
+ */
+ public static void main(String[] args) {
+ String versionInfoClass = "package gov.epa.festc.core;" + ls + ls
+ + "/**" + ls
+ + " * NOTE: Auto-generated file. Please don't try to change." + ls
+ + " * @version $Revision$ $Date$" + ls
+ + " */" + ls
+ + "public class VersionInfo {" + ls
+ + " public static final String version = \"" + version + "\";" + ls
+ + " public static final String date = \"" + timestamp + "\";" + ls + ls
+ + " public static String getVersion() {" + ls
+ + " return version;" + ls
+ + " }" + ls + ls
+ + " public static String getDate() {" + ls
+ + " return date;" + ls
+ + " }" + ls + ls
+ + "}";
+
+ File file = new File(System.getProperty("user.dir") + "/../festc_core/src/gov/epa/festc/core/VersionInfo.java");
+
+ try {
+ FileWriter writer = new FileWriter(file);
+ writer.write(versionInfoClass);
+ writer.close();
+ } catch (IOException e) {
+ System.out.println("Error writting VersionInfo.java file. " + e.getMessage());
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/action/About.java b/festc_core/src/gov/epa/festc/core/action/About.java
index c83353c..822e1d9 100644
--- a/festc_core/src/gov/epa/festc/core/action/About.java
+++ b/festc_core/src/gov/epa/festc/core/action/About.java
@@ -1,32 +1,32 @@
-package gov.epa.festc.core.action;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.gui.AboutDialog;
-
-import java.awt.event.ActionEvent;
-
-import javax.swing.JFrame;
-
-import saf.core.ui.actions.AbstractSAFAction;
-
-/**
- * Action to show the about dialog.
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-public class About extends AbstractSAFAction {
-
- private static final long serialVersionUID = 4707751873774402860L;
-
- /**
- * Invoked when an action occurs.
- */
- public void actionPerformed(ActionEvent e) {
- JFrame frame = workspace.getApplicationMediator().getGui().getFrame();
- AboutDialog dialog = new AboutDialog(frame);
- dialog.pack();
- dialog.setLocationRelativeTo(frame);
- dialog.setVisible(true);
- }
-}
+package gov.epa.festc.core.action;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.gui.AboutDialog;
+
+import java.awt.event.ActionEvent;
+
+import javax.swing.JFrame;
+
+import saf.core.ui.actions.AbstractSAFAction;
+
+/**
+ * Action to show the about dialog.
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+public class About extends AbstractSAFAction {
+
+ private static final long serialVersionUID = 4707751873774402860L;
+
+ /**
+ * Invoked when an action occurs.
+ */
+ public void actionPerformed(ActionEvent e) {
+ JFrame frame = workspace.getApplicationMediator().getGui().getFrame();
+ AboutDialog dialog = new AboutDialog(frame);
+ dialog.pack();
+ dialog.setLocationRelativeTo(frame);
+ dialog.setVisible(true);
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/action/CopyAction.java b/festc_core/src/gov/epa/festc/core/action/CopyAction.java
index f3394d1..fe60d16 100644
--- a/festc_core/src/gov/epa/festc/core/action/CopyAction.java
+++ b/festc_core/src/gov/epa/festc/core/action/CopyAction.java
@@ -1,34 +1,34 @@
-package gov.epa.festc.core.action;
-
-import gov.epa.festc.core.FestcApplication;
-
-import java.awt.event.ActionEvent;
-
-import javax.swing.JOptionPane;
-
-import saf.core.ui.actions.AbstractSAFAction;
-
-/**
- * Action for opening files.
- *
- * @author Qun He
- * @version $Revision$ $Date$
- */
-public class CopyAction extends AbstractSAFAction {
- private static final long serialVersionUID = 2948227677960767437L;
-
- /**
- * Invoked when an action occurs.
- */
- public void actionPerformed(ActionEvent e) {
- FestcApplication app = workspace.getApplicationMediator();
- if ( app.getProjFile() != null ){
-// int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
-// if ( option == 0 )
- app.saveProject();
- app.copyProject();
- }
- else
- app.copyProject();
- }
-}
+package gov.epa.festc.core.action;
+
+import gov.epa.festc.core.FestcApplication;
+
+import java.awt.event.ActionEvent;
+
+import javax.swing.JOptionPane;
+
+import saf.core.ui.actions.AbstractSAFAction;
+
+/**
+ * Action for opening files.
+ *
+ * @author Qun He
+ * @version $Revision$ $Date$
+ */
+public class CopyAction extends AbstractSAFAction {
+ private static final long serialVersionUID = 2948227677960767437L;
+
+ /**
+ * Invoked when an action occurs.
+ */
+ public void actionPerformed(ActionEvent e) {
+ FestcApplication app = workspace.getApplicationMediator();
+ if ( app.getProjFile() != null ){
+// int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
+// if ( option == 0 )
+ app.saveProject();
+ app.copyProject();
+ }
+ else
+ app.copyProject();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/action/CreateAction.java b/festc_core/src/gov/epa/festc/core/action/CreateAction.java
index 15ec5a5..6af232a 100644
--- a/festc_core/src/gov/epa/festc/core/action/CreateAction.java
+++ b/festc_core/src/gov/epa/festc/core/action/CreateAction.java
@@ -1,34 +1,34 @@
-package gov.epa.festc.core.action;
-
-import gov.epa.festc.core.FestcApplication;
-
-import java.awt.event.ActionEvent;
-
-import javax.swing.JOptionPane;
-
-import saf.core.ui.actions.AbstractSAFAction;
-
-/**
- * Action for opening files.
- *
- * @author Nick Collier
- * @version $Revision$ $Date$
- */
-public class CreateAction extends AbstractSAFAction {
- private static final long serialVersionUID = 2948227677960767437L;
-
- /**
- * Invoked when an action occurs.
- */
- public void actionPerformed(ActionEvent e) {
- FestcApplication app = workspace.getApplicationMediator();
- if ( app.getProjFile() != null ){
-// int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
-// if ( option == 0 )
- app.saveProject();
- app.createProject();
- }
- else
- app.createProject();
- }
-}
+package gov.epa.festc.core.action;
+
+import gov.epa.festc.core.FestcApplication;
+
+import java.awt.event.ActionEvent;
+
+import javax.swing.JOptionPane;
+
+import saf.core.ui.actions.AbstractSAFAction;
+
+/**
+ * Action for opening files.
+ *
+ * @author Nick Collier
+ * @version $Revision$ $Date$
+ */
+public class CreateAction extends AbstractSAFAction {
+ private static final long serialVersionUID = 2948227677960767437L;
+
+ /**
+ * Invoked when an action occurs.
+ */
+ public void actionPerformed(ActionEvent e) {
+ FestcApplication app = workspace.getApplicationMediator();
+ if ( app.getProjFile() != null ){
+// int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
+// if ( option == 0 )
+ app.saveProject();
+ app.createProject();
+ }
+ else
+ app.createProject();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/action/DeleteAction.java b/festc_core/src/gov/epa/festc/core/action/DeleteAction.java
index 8443250..fa40709 100644
--- a/festc_core/src/gov/epa/festc/core/action/DeleteAction.java
+++ b/festc_core/src/gov/epa/festc/core/action/DeleteAction.java
@@ -1,24 +1,24 @@
-package gov.epa.festc.core.action;
-
-import gov.epa.festc.core.FestcApplication;
-
-import java.awt.event.ActionEvent;
-
-import saf.core.ui.actions.AbstractSAFAction;
-
-/**
- * Action for opening files.
- *
- * @author Qun He
- * @version $Revision$ $Date$
- */
-public class DeleteAction extends AbstractSAFAction {
- private static final long serialVersionUID = 2948227677960767437L;
-
- /**
- * Invoked when an action occurs.
- */
- public void actionPerformed(ActionEvent e) {
- workspace.getApplicationMediator().deleteProject();
- }
-}
+package gov.epa.festc.core.action;
+
+import gov.epa.festc.core.FestcApplication;
+
+import java.awt.event.ActionEvent;
+
+import saf.core.ui.actions.AbstractSAFAction;
+
+/**
+ * Action for opening files.
+ *
+ * @author Qun He
+ * @version $Revision$ $Date$
+ */
+public class DeleteAction extends AbstractSAFAction {
+ private static final long serialVersionUID = 2948227677960767437L;
+
+ /**
+ * Invoked when an action occurs.
+ */
+ public void actionPerformed(ActionEvent e) {
+ workspace.getApplicationMediator().deleteProject();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/action/ExitAction.java b/festc_core/src/gov/epa/festc/core/action/ExitAction.java
index 1a5c51a..4453a05 100644
--- a/festc_core/src/gov/epa/festc/core/action/ExitAction.java
+++ b/festc_core/src/gov/epa/festc/core/action/ExitAction.java
@@ -1,31 +1,31 @@
-package gov.epa.festc.core.action;
-
-import gov.epa.festc.core.FestcApplication;
-
-import java.awt.event.ActionEvent;
-
-import javax.swing.JOptionPane;
-
-import saf.core.ui.actions.AbstractSAFAction;
-
-/**
- * Action for exit files.
- *
- * @version $Revision$ $Date$
- */
-public class ExitAction extends AbstractSAFAction {
- private static final long serialVersionUID = 4008068827373247119L;
-
- /**
- * Invoked when an action occurs.
- */
- public void actionPerformed(ActionEvent e) {
- FestcApplication app = workspace.getApplicationMediator();
- if ( app.getProjFile() != null ){
- // int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
- // if ( option == 0 )
- app.saveProject();
- }
- System.exit(0);
- }
-}
+package gov.epa.festc.core.action;
+
+import gov.epa.festc.core.FestcApplication;
+
+import java.awt.event.ActionEvent;
+
+import javax.swing.JOptionPane;
+
+import saf.core.ui.actions.AbstractSAFAction;
+
+/**
+ * Action for exit files.
+ *
+ * @version $Revision$ $Date$
+ */
+public class ExitAction extends AbstractSAFAction {
+ private static final long serialVersionUID = 4008068827373247119L;
+
+ /**
+ * Invoked when an action occurs.
+ */
+ public void actionPerformed(ActionEvent e) {
+ FestcApplication app = workspace.getApplicationMediator();
+ if ( app.getProjFile() != null ){
+ // int option = JOptionPane.showConfirmDialog(null, "Do you want to save scenario? ", "Confirmation", JOptionPane.YES_NO_OPTION);
+ // if ( option == 0 )
+ app.saveProject();
+ }
+ System.exit(0);
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/action/Help.java b/festc_core/src/gov/epa/festc/core/action/Help.java
index 2ee2ff5..33e7c18 100644
--- a/festc_core/src/gov/epa/festc/core/action/Help.java
+++ b/festc_core/src/gov/epa/festc/core/action/Help.java
@@ -1,25 +1,25 @@
-package gov.epa.festc.core.action;
-
-import gov.epa.festc.core.FestcApplication;
-
-import java.awt.event.ActionEvent;
-
-import saf.core.ui.actions.AbstractSAFAction;
-
-/**
- * Action to show the help
- *
- * @author IE, UNC
- * @version $Revision$ $Date$
- */
-public class Help extends AbstractSAFAction {
-
- private static final long serialVersionUID = -6430759498830546714L;
-
- /**
- * Invoked when an action occurs.
- */
- public void actionPerformed(ActionEvent e) {
- workspace.getApplicationMediator().showHelp();
- }
-}
+package gov.epa.festc.core.action;
+
+import gov.epa.festc.core.FestcApplication;
+
+import java.awt.event.ActionEvent;
+
+import saf.core.ui.actions.AbstractSAFAction;
+
+/**
+ * Action to show the help
+ *
+ * @author IE, UNC
+ * @version $Revision$ $Date$
+ */
+public class Help extends AbstractSAFAction {
+
+ private static final long serialVersionUID = -6430759498830546714L;
+
+ /**
+ * Invoked when an action occurs.
+ */
+ public void actionPerformed(ActionEvent e) {
+ workspace.getApplicationMediator().showHelp();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/action/OpenAction.java b/festc_core/src/gov/epa/festc/core/action/OpenAction.java
index c2c5735..471cd3c 100644
--- a/festc_core/src/gov/epa/festc/core/action/OpenAction.java
+++ b/festc_core/src/gov/epa/festc/core/action/OpenAction.java
@@ -1,24 +1,24 @@
-package gov.epa.festc.core.action;
-
-import gov.epa.festc.core.FestcApplication;
-
-import java.awt.event.ActionEvent;
-
-import saf.core.ui.actions.AbstractSAFAction;
-
-/**
- * Action for opening files.
- *
- * @author Nick Collier
- * @version $Revision$ $Date$
- */
-public class OpenAction extends AbstractSAFAction {
- private static final long serialVersionUID = 2948227677960767437L;
-
- /**
- * Invoked when an action occurs.
- */
- public void actionPerformed(ActionEvent e) {
- workspace.getApplicationMediator().openProject();
- }
-}
+package gov.epa.festc.core.action;
+
+import gov.epa.festc.core.FestcApplication;
+
+import java.awt.event.ActionEvent;
+
+import saf.core.ui.actions.AbstractSAFAction;
+
+/**
+ * Action for opening files.
+ *
+ * @author Nick Collier
+ * @version $Revision$ $Date$
+ */
+public class OpenAction extends AbstractSAFAction {
+ private static final long serialVersionUID = 2948227677960767437L;
+
+ /**
+ * Invoked when an action occurs.
+ */
+ public void actionPerformed(ActionEvent e) {
+ workspace.getApplicationMediator().openProject();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/action/SaveAction.java b/festc_core/src/gov/epa/festc/core/action/SaveAction.java
index 16cd8ac..0598578 100644
--- a/festc_core/src/gov/epa/festc/core/action/SaveAction.java
+++ b/festc_core/src/gov/epa/festc/core/action/SaveAction.java
@@ -1,23 +1,23 @@
-package gov.epa.festc.core.action;
-
-import gov.epa.festc.core.FestcApplication;
-
-import java.awt.event.ActionEvent;
-
-import saf.core.ui.actions.AbstractSAFAction;
-
-/**
- * Action for opening files.
- *
- * @version $Revision$ $Date$
- */
-public class SaveAction extends AbstractSAFAction {
- private static final long serialVersionUID = 8373565559359050502L;
-
- /**
- * Invoked when an action occurs.
- */
- public void actionPerformed(ActionEvent e) {
- workspace.getApplicationMediator().saveProject();
- }
-}
+package gov.epa.festc.core.action;
+
+import gov.epa.festc.core.FestcApplication;
+
+import java.awt.event.ActionEvent;
+
+import saf.core.ui.actions.AbstractSAFAction;
+
+/**
+ * Action for opening files.
+ *
+ * @version $Revision$ $Date$
+ */
+public class SaveAction extends AbstractSAFAction {
+ private static final long serialVersionUID = 8373565559359050502L;
+
+ /**
+ * Invoked when an action occurs.
+ */
+ public void actionPerformed(ActionEvent e) {
+ workspace.getApplicationMediator().saveProject();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/Beld4DataGenFields.java b/festc_core/src/gov/epa/festc/core/proj/Beld4DataGenFields.java
index f5cb05b..f99de50 100644
--- a/festc_core/src/gov/epa/festc/core/proj/Beld4DataGenFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/Beld4DataGenFields.java
@@ -1,46 +1,46 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.Beld4DataGenFields")
-
-public class Beld4DataGenFields extends DomainFields{
- //private String nlcdYear;
- private String nlcdFile;
- private boolean nlcdDataSelected;
- private boolean modisDataSelected;
-
- public Beld4DataGenFields() {
- //NOTE: no-op
- }
-
- public void setNLCDfile(String nlcdFile) {
- this.nlcdFile = nlcdFile;
- }
- public String getNLCDfile() {
- return nlcdFile;
- }
-
- public boolean isNlcdDataSelected() {
- return nlcdDataSelected;
- }
-
- public void setNlcdDataSelected(boolean nlcdDataSelected) {
- this.nlcdDataSelected = nlcdDataSelected;
- }
-
- public boolean isModisDataSelected() {
- return modisDataSelected;
- }
-
- public void setModisDataSelected(boolean modisDataSelected) {
- this.modisDataSelected = modisDataSelected;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return Beld4DataGenFields.class.getCanonicalName();
- }
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.Beld4DataGenFields")
+
+public class Beld4DataGenFields extends DomainFields{
+ //private String nlcdYear;
+ private String nlcdFile;
+ private boolean nlcdDataSelected;
+ private boolean modisDataSelected;
+
+ public Beld4DataGenFields() {
+ //NOTE: no-op
+ }
+
+ public void setNLCDfile(String nlcdFile) {
+ this.nlcdFile = nlcdFile;
+ }
+ public String getNLCDfile() {
+ return nlcdFile;
+ }
+
+ public boolean isNlcdDataSelected() {
+ return nlcdDataSelected;
+ }
+
+ public void setNlcdDataSelected(boolean nlcdDataSelected) {
+ this.nlcdDataSelected = nlcdDataSelected;
+ }
+
+ public boolean isModisDataSelected() {
+ return modisDataSelected;
+ }
+
+ public void setModisDataSelected(boolean modisDataSelected) {
+ this.modisDataSelected = modisDataSelected;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return Beld4DataGenFields.class.getCanonicalName();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/DomainFields.java b/festc_core/src/gov/epa/festc/core/proj/DomainFields.java
index 2b9d003..43a2608 100644
--- a/festc_core/src/gov/epa/festc/core/proj/DomainFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/DomainFields.java
@@ -1,62 +1,71 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.DomainFields")
-public class DomainFields extends PageFields {
-
- protected String simYear;
- protected String nlcdYear;
- protected String cfertYear;
- protected String cminAcres;
- //protected String csimYear;
-
-
- public String getCMinAcres() {
- return cminAcres;
- }
-
- public String getCFertYear() {
- return cfertYear;
- }
-
- public String getSimYear() {
- return simYear;
- }
-
- public String getNlcdYear() {
- return nlcdYear;
- }
-
-
- public void setCMinAcres(String acres) {
- this.cminAcres = acres;
- }
-
- public void setCFertYear(String cfertYear) {
- this.cfertYear = cfertYear;
- }
-
- public void setSimYear(String year) {
- this.simYear = year;
- }
-
- public void setNlcdYear(String year) {
- this.nlcdYear = year;
- }
-
- public void setNlcdYear() {
- Integer sYear = Integer.parseInt(simYear);
- if ( sYear < 2006 ) this.nlcdYear = "2001";
- if ( sYear >= 2006 ) this.nlcdYear = "2006"; // sYear >= 2006 && sYear < 2011
- //if ( sYear >= 2011 ) this.nlcdYear = "2011";
- }
-
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return DomainFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.DomainFields")
+public class DomainFields extends PageFields {
+
+ protected String simYear;
+ protected String simEndYear;
+ protected String nlcdYear;
+ protected String cfertYear;
+ protected String cminAcres;
+ //protected String csimYear;
+
+
+ public String getCMinAcres() {
+ return cminAcres;
+ }
+
+ public String getCFertYear() {
+ return cfertYear;
+ }
+
+ public String getSimYear() {
+ return simYear;
+ }
+
+ public String getSimEndYear() {
+ return simEndYear;
+ }
+
+ public String getNlcdYear() {
+ return nlcdYear;
+ }
+
+
+ public void setCMinAcres(String acres) {
+ this.cminAcres = acres;
+ }
+
+ public void setCFertYear(String cfertYear) {
+ this.cfertYear = cfertYear;
+ }
+
+ public void setSimYear(String year) {
+ this.simYear = year;
+ }
+
+ public void setSimEndYear(String year) {
+ this.simEndYear = year;
+ }
+
+ public void setNlcdYear(String year) {
+ this.nlcdYear = year;
+ }
+
+ public void setNlcdYear() {
+ Integer sYear = Integer.parseInt(simYear);
+ if ( sYear < 2006 ) this.nlcdYear = "2001";
+ if ( sYear >= 2006 ) this.nlcdYear = "2006"; // sYear >= 2006 && sYear < 2011
+ //if ( sYear >= 2011 ) this.nlcdYear = "2011";
+ }
+
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return DomainFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/Epic2CMAQFields.java b/festc_core/src/gov/epa/festc/core/proj/Epic2CMAQFields.java
index acfb417..f8e1736 100644
--- a/festc_core/src/gov/epa/festc/core/proj/Epic2CMAQFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/Epic2CMAQFields.java
@@ -1,50 +1,50 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-//import gov.epa.festc.gui.Epic2CMAQPanel;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.Epic2CMAQFields")
-public class Epic2CMAQFields extends PageFields{
-
- private String startdate;
- private String enddate;
-
- private String outfileprefix;
-
- public Epic2CMAQFields() {
- //NOTE: no-op
- }
-
- public String getStartdate() {
- return startdate;
- }
-
- public void setStartdate(String startdate) {
- this.startdate = startdate;
- }
-
- public String getEnddate() {
- return enddate;
- }
-
- public void setEnddate(String enddate) {
- this.enddate = enddate;
- }
-
- public String getOutfileprefix() {
- return outfileprefix;
- }
-
- public void setOutfileprefix(String outfileprefix) {
- this.outfileprefix = outfileprefix;
- }
-
-
- @Override
- public String getName() {
- return Epic2CMAQFields.class.getCanonicalName();
- }
-
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+//import gov.epa.festc.gui.Epic2CMAQPanel;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.Epic2CMAQFields")
+public class Epic2CMAQFields extends PageFields{
+
+ private String startdate;
+ private String enddate;
+
+ private String outfileprefix;
+
+ public Epic2CMAQFields() {
+ //NOTE: no-op
+ }
+
+ public String getStartdate() {
+ return startdate;
+ }
+
+ public void setStartdate(String startdate) {
+ this.startdate = startdate;
+ }
+
+ public String getEnddate() {
+ return enddate;
+ }
+
+ public void setEnddate(String enddate) {
+ this.enddate = enddate;
+ }
+
+ public String getOutfileprefix() {
+ return outfileprefix;
+ }
+
+ public void setOutfileprefix(String outfileprefix) {
+ this.outfileprefix = outfileprefix;
+ }
+
+
+ @Override
+ public String getName() {
+ return Epic2CMAQFields.class.getCanonicalName();
+ }
+
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/Epic2SWATFields.java b/festc_core/src/gov/epa/festc/core/proj/Epic2SWATFields.java
index 7f7c7d0..ce487c2 100644
--- a/festc_core/src/gov/epa/festc/core/proj/Epic2SWATFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/Epic2SWATFields.java
@@ -1,73 +1,73 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-import gov.epa.festc.gui.Epic2CMAQPanel;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.Epic2SWATFields")
-public class Epic2SWATFields extends PageFields{
-
- private String beld4ncf;
- private String metdep;
- private String nDepSelection;
- private String hucSelection;
- private String ratioFile;
- private String outfileprefix;
-
- public Epic2SWATFields() {
- //NOTE: no-op
- }
-
- public String getNDepSelection() {
- return nDepSelection;
- }
-
- public void setNDepSelection(String nDepSelection) {
- this.nDepSelection = nDepSelection;
- }
-
- public String getHucSelection() {
- return hucSelection;
- }
-
- public void setHucSelection(String hucSelection) {
- this.hucSelection = hucSelection;
- }
-
- public String getRatioFile() {
- return ratioFile;
- }
-
- public void setRatioFile(String ratioFile) {
- this.ratioFile = ratioFile;
- }
-
- public void setBeld4ncf(String beld4ncf) {
- this.beld4ncf = beld4ncf;
- }
- public String getBeld4ncf() {
- return beld4ncf;
- }
-
- public void setMetdep(String metdep) {
- this.metdep = metdep;
- }
- public String getMetdep() {
- return metdep;
- }
-
- public String getOutfileprefix() {
- return outfileprefix;
- }
-
- public void setOutfileprefix(String outfileprefix) {
- this.outfileprefix = outfileprefix;
- }
-
-
- @Override
- public String getName() {
- return Epic2SWATFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+import gov.epa.festc.gui.Epic2CMAQPanel;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.Epic2SWATFields")
+public class Epic2SWATFields extends PageFields{
+
+ private String beld4ncf;
+ private String metdep;
+ private String nDepSelection;
+ private String hucSelection;
+ private String ratioFile;
+ private String outfileprefix;
+
+ public Epic2SWATFields() {
+ //NOTE: no-op
+ }
+
+ public String getNDepSelection() {
+ return nDepSelection;
+ }
+
+ public void setNDepSelection(String nDepSelection) {
+ this.nDepSelection = nDepSelection;
+ }
+
+ public String getHucSelection() {
+ return hucSelection;
+ }
+
+ public void setHucSelection(String hucSelection) {
+ this.hucSelection = hucSelection;
+ }
+
+ public String getRatioFile() {
+ return ratioFile;
+ }
+
+ public void setRatioFile(String ratioFile) {
+ this.ratioFile = ratioFile;
+ }
+
+ public void setBeld4ncf(String beld4ncf) {
+ this.beld4ncf = beld4ncf;
+ }
+ public String getBeld4ncf() {
+ return beld4ncf;
+ }
+
+ public void setMetdep(String metdep) {
+ this.metdep = metdep;
+ }
+ public String getMetdep() {
+ return metdep;
+ }
+
+ public String getOutfileprefix() {
+ return outfileprefix;
+ }
+
+ public void setOutfileprefix(String outfileprefix) {
+ this.outfileprefix = outfileprefix;
+ }
+
+
+ @Override
+ public String getName() {
+ return Epic2SWATFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/EpicAppFields.java b/festc_core/src/gov/epa/festc/core/proj/EpicAppFields.java
index b4d3372..f6144cc 100644
--- a/festc_core/src/gov/epa/festc/core/proj/EpicAppFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/EpicAppFields.java
@@ -1,55 +1,55 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.EpicAppFields")
-public class EpicAppFields extends DomainFields {
-
- private String finishedCrops;
- //private String simYear;
- private String nDepDir;
- private String co2Fac;
- private String runTiledrain;
-
- public EpicAppFields() {
- //NOTE: no-op
- }
-
- public String getFinishedCrops() {
- return finishedCrops;
- }
-
- public void setFinishedCrops(String finishedCrops) {
- this.finishedCrops = finishedCrops;
- }
-
- public String getNDepDir() {
- return nDepDir;
- }
-
- public void setNDepDir(String nDepDir) {
- this.nDepDir = nDepDir;
- }
-
- public void setCO2Fac(String co2fac) {
- this.co2Fac = co2fac;
- }
- public String getCO2Fac() {
- return co2Fac;
- }
-
- public void setRunTiledrain(String runTiledrain) {
- this.runTiledrain = runTiledrain;
- }
-
- public String getRunTiledrain() {
- return runTiledrain;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return EpicAppFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.EpicAppFields")
+public class EpicAppFields extends DomainFields {
+
+ private String finishedCrops;
+ //private String simYear;
+ private String nDepDir;
+ private String co2Fac;
+ private String runTiledrain;
+
+ public EpicAppFields() {
+ //NOTE: no-op
+ }
+
+ public String getFinishedCrops() {
+ return finishedCrops;
+ }
+
+ public void setFinishedCrops(String finishedCrops) {
+ this.finishedCrops = finishedCrops;
+ }
+
+ public String getNDepDir() {
+ return nDepDir;
+ }
+
+ public void setNDepDir(String nDepDir) {
+ this.nDepDir = nDepDir;
+ }
+
+ public void setCO2Fac(String co2fac) {
+ this.co2Fac = co2fac;
+ }
+ public String getCO2Fac() {
+ return co2Fac;
+ }
+
+ public void setRunTiledrain(String runTiledrain) {
+ this.runTiledrain = runTiledrain;
+ }
+
+ public String getRunTiledrain() {
+ return runTiledrain;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return EpicAppFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/EpicSpinupFields.java b/festc_core/src/gov/epa/festc/core/proj/EpicSpinupFields.java
index 2765ab6..ae335bd 100644
--- a/festc_core/src/gov/epa/festc/core/proj/EpicSpinupFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/EpicSpinupFields.java
@@ -1,53 +1,53 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.EpicSpinupFields")
-public class EpicSpinupFields extends DomainFields {
-
- private String finishedCrops;
- private String nDepDir;
- private String co2Fac;
- private String runTiledrain;
- public EpicSpinupFields() {
- //NOTE: no-op
- }
-
- public String getFinishedCrops() {
- return finishedCrops;
- }
-
- public void setFinishedCrops(String finishedCrops) {
- this.finishedCrops = finishedCrops;
- }
-
- public String getNDepDir() {
- return nDepDir;
- }
-
- public void setRunTiledrain(String runTiledrain) {
- this.runTiledrain = runTiledrain;
- }
-
- public String getRunTiledrain() {
- return runTiledrain;
- }
-
- public void setNDepDir(String nDepDir) {
- this.nDepDir = nDepDir;
- }
-
- public void setCO2Fac(String co2fac) {
- this.co2Fac = co2fac;
- }
- public String getCO2Fac() {
- return co2Fac;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return EpicSpinupFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.EpicSpinupFields")
+public class EpicSpinupFields extends DomainFields {
+
+ private String finishedCrops;
+ private String nDepDir;
+ private String co2Fac;
+ private String runTiledrain;
+ public EpicSpinupFields() {
+ //NOTE: no-op
+ }
+
+ public String getFinishedCrops() {
+ return finishedCrops;
+ }
+
+ public void setFinishedCrops(String finishedCrops) {
+ this.finishedCrops = finishedCrops;
+ }
+
+ public String getNDepDir() {
+ return nDepDir;
+ }
+
+ public void setRunTiledrain(String runTiledrain) {
+ this.runTiledrain = runTiledrain;
+ }
+
+ public String getRunTiledrain() {
+ return runTiledrain;
+ }
+
+ public void setNDepDir(String nDepDir) {
+ this.nDepDir = nDepDir;
+ }
+
+ public void setCO2Fac(String co2fac) {
+ this.co2Fac = co2fac;
+ }
+ public String getCO2Fac() {
+ return co2Fac;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return EpicSpinupFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/ManFileModFields.java b/festc_core/src/gov/epa/festc/core/proj/ManFileModFields.java
index 415e406..030c63c 100644
--- a/festc_core/src/gov/epa/festc/core/proj/ManFileModFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/ManFileModFields.java
@@ -1,18 +1,18 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.ManFileModFields")
-public class ManFileModFields extends PageFields{
-
- public ManFileModFields() {
- //NOTE: no-op
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return ManFileModFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.ManFileModFields")
+public class ManFileModFields extends PageFields{
+
+ public ManFileModFields() {
+ //NOTE: no-op
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return ManFileModFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/ManageAppFields.java b/festc_core/src/gov/epa/festc/core/proj/ManageAppFields.java
index 1275c4a..c4a56c2 100644
--- a/festc_core/src/gov/epa/festc/core/proj/ManageAppFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/ManageAppFields.java
@@ -1,28 +1,28 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.ManageAppFields")
-public class ManageAppFields extends DomainFields {
-
- private String fertYear;
-
- public ManageAppFields() {
- //NOTE: no-op
- }
-
- public String getFertYear() {
- return fertYear;
- }
-
- public void setFertYear(String fertYear) {
- this.fertYear = fertYear;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return ManageAppFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.ManageAppFields")
+public class ManageAppFields extends DomainFields {
+
+ private String fertYear;
+
+ public ManageAppFields() {
+ //NOTE: no-op
+ }
+
+ public String getFertYear() {
+ return fertYear;
+ }
+
+ public void setFertYear(String fertYear) {
+ this.fertYear = fertYear;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return ManageAppFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/ManageSpinupFields.java b/festc_core/src/gov/epa/festc/core/proj/ManageSpinupFields.java
index d4c8c7c..39844f2 100644
--- a/festc_core/src/gov/epa/festc/core/proj/ManageSpinupFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/ManageSpinupFields.java
@@ -1,28 +1,28 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.ManageSpinupFields")
-public class ManageSpinupFields extends DomainFields {
-
- private String fertYear; // used for check consistent with app
-
- public ManageSpinupFields() {
- //NOTE: no-op
- }
-
- public String getFertYear() {
- return fertYear;
- }
-
- public void setFertYear(String fertYear) {
- this.fertYear = fertYear;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return ManageSpinupFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.ManageSpinupFields")
+public class ManageSpinupFields extends DomainFields {
+
+ private String fertYear; // used for check consistent with app
+
+ public ManageSpinupFields() {
+ //NOTE: no-op
+ }
+
+ public String getFertYear() {
+ return fertYear;
+ }
+
+ public void setFertYear(String fertYear) {
+ this.fertYear = fertYear;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return ManageSpinupFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/Mcip2EpicFields.java b/festc_core/src/gov/epa/festc/core/proj/Mcip2EpicFields.java
index 9d92f9c..a83adac 100644
--- a/festc_core/src/gov/epa/festc/core/proj/Mcip2EpicFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/Mcip2EpicFields.java
@@ -1,73 +1,73 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.Mcip2EpicFields")
-public class Mcip2EpicFields extends PageFields{
-
- private String startdate;
- private String enddate;
- private String mcipDataDir;
- private String depSelection;
- private String cmaqDepsDir;
-
- public Mcip2EpicFields() {
- //NOTE: no-op
- }
-
- public String getStartdate() {
- return startdate;
- }
-
- public void setStartdate(String startdate) {
- this.startdate = startdate;
- }
-
- public String getEnddate() {
- return enddate;
- }
-
- public void setEnddate(String enddate) {
- this.enddate = enddate;
- }
-
- public String getDatadir() {
- return mcipDataDir;
- }
-
- public void setDatadir(String datadir) {
- this.mcipDataDir = datadir;
- }
-
- public String getCmaqDepsDir() {
- return cmaqDepsDir;
- }
-
- public void setCmaqDepsDir(String cmaqDepsDir) {
- this.cmaqDepsDir = cmaqDepsDir;
- }
-
- public String getDepSelection() {
- return depSelection;
- }
-
- public void setDepSelection(String depSelection) {
- this.depSelection = depSelection;
- }
-
-
- public void setGridName(String gridName) {
- this.gridName = gridName;
- }
-
- public String getGridName() {
- return gridName;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return Mcip2EpicFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.Mcip2EpicFields")
+public class Mcip2EpicFields extends PageFields{
+
+ private String startdate;
+ private String enddate;
+ private String mcipDataDir;
+ private String depSelection;
+ private String cmaqDepsDir;
+
+ public Mcip2EpicFields() {
+ //NOTE: no-op
+ }
+
+ public String getStartdate() {
+ return startdate;
+ }
+
+ public void setStartdate(String startdate) {
+ this.startdate = startdate;
+ }
+
+ public String getEnddate() {
+ return enddate;
+ }
+
+ public void setEnddate(String enddate) {
+ this.enddate = enddate;
+ }
+
+ public String getDatadir() {
+ return mcipDataDir;
+ }
+
+ public void setDatadir(String datadir) {
+ this.mcipDataDir = datadir;
+ }
+
+ public String getCmaqDepsDir() {
+ return cmaqDepsDir;
+ }
+
+ public void setCmaqDepsDir(String cmaqDepsDir) {
+ this.cmaqDepsDir = cmaqDepsDir;
+ }
+
+ public String getDepSelection() {
+ return depSelection;
+ }
+
+ public void setDepSelection(String depSelection) {
+ this.depSelection = depSelection;
+ }
+
+
+ public void setGridName(String gridName) {
+ this.gridName = gridName;
+ }
+
+ public String getGridName() {
+ return gridName;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return Mcip2EpicFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/PageFields.java b/festc_core/src/gov/epa/festc/core/proj/PageFields.java
index 4878fb5..dc40cab 100644
--- a/festc_core/src/gov/epa/festc/core/proj/PageFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/PageFields.java
@@ -1,84 +1,84 @@
-package gov.epa.festc.core.proj;
-
-public abstract class PageFields {
- protected String message;
- protected String scenarioDir;
-
- protected int rows;
- protected int cols;
- protected float xcellsize;
- protected float ycellsize;
- protected float xmin;
- protected float ymin;
-
- protected String proj4projection;
- protected String gridName;
-
- public String getMessage() {
- return message;
- }
-
- public void setMessage(String msg) {
- this.message = msg;
- }
-
- public void setScenarioDir(String scenarioDir) {
- this.scenarioDir = scenarioDir;
- }
-
- public String getScenarioDir() {
- return scenarioDir;
- }
-
- public void setRows(int rows) {
- this.rows = rows;
- }
- public int getRows() {
- return rows;
- }
- public void setCols(int cols) {
- this.cols = cols;
- }
- public int getCols() {
- return cols;
- }
- public void setXcellSize(float xcellsize) {
- this.xcellsize = xcellsize;
- }
- public float getXcellSize() {
- return xcellsize;
- }
- public void setYcellSize(float ycellsize) {
- this.ycellsize = ycellsize;
- }
- public float getYcellSize() {
- return ycellsize;
- }
- public void setXmin(float xmin) {
- this.xmin = xmin;
- }
- public float getXmin() {
- return xmin;
- }
- public void setYmin(float ymin) {
- this.ymin = ymin;
- }
- public float getYmin() {
- return ymin;
- }
-
- public void setProj(String proj) {
- this.proj4projection = proj;
- }
- public String getProj() {
- return proj4projection;
- }
- public void setGridName(String gridName) {
- this.gridName = gridName;
- }
- public String getGridName() {
- return gridName;
- }
-
- public abstract String getName();
-}
+package gov.epa.festc.core.proj;
+
+public abstract class PageFields {
+ protected String message;
+ protected String scenarioDir;
+
+ protected int rows;
+ protected int cols;
+ protected float xcellsize;
+ protected float ycellsize;
+ protected float xmin;
+ protected float ymin;
+
+ protected String proj4projection;
+ protected String gridName;
+
+ public String getMessage() {
+ return message;
+ }
+
+ public void setMessage(String msg) {
+ this.message = msg;
+ }
+
+ public void setScenarioDir(String scenarioDir) {
+ this.scenarioDir = scenarioDir;
+ }
+
+ public String getScenarioDir() {
+ return scenarioDir;
+ }
+
+ public void setRows(int rows) {
+ this.rows = rows;
+ }
+ public int getRows() {
+ return rows;
+ }
+ public void setCols(int cols) {
+ this.cols = cols;
+ }
+ public int getCols() {
+ return cols;
+ }
+ public void setXcellSize(float xcellsize) {
+ this.xcellsize = xcellsize;
+ }
+ public float getXcellSize() {
+ return xcellsize;
+ }
+ public void setYcellSize(float ycellsize) {
+ this.ycellsize = ycellsize;
+ }
+ public float getYcellSize() {
+ return ycellsize;
+ }
+ public void setXmin(float xmin) {
+ this.xmin = xmin;
+ }
+ public float getXmin() {
+ return xmin;
+ }
+ public void setYmin(float ymin) {
+ this.ymin = ymin;
+ }
+ public float getYmin() {
+ return ymin;
+ }
+
+ public void setProj(String proj) {
+ this.proj4projection = proj;
+ }
+ public String getProj() {
+ return proj4projection;
+ }
+ public void setGridName(String gridName) {
+ this.gridName = gridName;
+ }
+ public String getGridName() {
+ return gridName;
+ }
+
+ public abstract String getName();
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/ProjectLoader.java b/festc_core/src/gov/epa/festc/core/proj/ProjectLoader.java
index 5d5ee68..ac35a57 100644
--- a/festc_core/src/gov/epa/festc/core/proj/ProjectLoader.java
+++ b/festc_core/src/gov/epa/festc/core/proj/ProjectLoader.java
@@ -1,76 +1,76 @@
-package gov.epa.festc.core.proj;
-
-import gov.epa.festc.core.Project;
-
-import java.io.File;
-import java.io.FileReader;
-import java.io.IOException;
-
-import javax.xml.bind.JAXBContext;
-import javax.xml.bind.JAXBException;
-import javax.xml.bind.Marshaller;
-import javax.xml.bind.Unmarshaller;
-
-/**
- * Saves elements of the application to disk so they can be loaded later.
- *
- * @author IE, UNC Chapel Hill
- * @version $Revision$ $Date$
- */
-public class ProjectLoader {
- private JAXBContext context;
- private Marshaller m;
- private Unmarshaller um;
-
- public ProjectLoader() throws JAXBException {
- // create JAXB context and instantiate marshaller/unmarshaller
- // SiteInfoGenFields: EPIC Site Info:
- // Mcip2EpicFields: MCIP/EPIC to EPIC
-
- // SiteFilesFields : EPIC Site file generation ( run two executables )
- // SoilFilesFields : EPIC Soil file generation ( run soil match)
- // ManageSpinupFields: Management file generation for spinup
- // ManFileModFields: View/Edit EPIC Inputs
- // EpicSpinupFields : Epic runs for spinup
- // EpicYearlyAverage2CMAQFields: EPIC Yearly Output
- // Epic2CMAQFields:
- // Epic2SWATFields:
- context = JAXBContext.newInstance(Project.class, Beld4DataGenFields.class, Mcip2EpicFields.class, SiteFilesFields.class,
- SoilFilesFields.class, ManageSpinupFields.class, ManFileModFields.class, EpicSpinupFields.class,
- EpicYearlyAverage2CMAQFields.class, ManageAppFields.class, EpicAppFields.class,
- VisualizationFields.class, SiteInfoGenFields.class, Epic2CMAQFields.class,
- Epic2SWATFields.class,DomainFields.class);
- m = context.createMarshaller();
- m.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
- um = context.createUnmarshaller();
- }
-
- /**
- * Saves the specified project to the specified file.
- *
- * @param file the file to save the model to
- * @param project the project to save
- * @throws IOException if there is an error duing saving
- * @throws JAXBException
- * @throws JAXBException if the xml mapping error occurs
- */
- public void save(File file, Project project) throws IOException, JAXBException {
- m.marshal(project, file);
- }
-
- /**
- * Loads the project data in specified file into the
- * specified project.
- *
- * @param file the file containing the data to load
- * @param project the project to load the data into
- * @param manager used to create the Datasets
- * @param creator the creator used to properly create the formula items
- * @throws IOException if there is an error during loading.
- * @throws JAXBException if the xml mapping error occurs
- */
- public void load(File file, Project project) throws JAXBException, IOException {
- Project loaded = (Project) um.unmarshal(new FileReader(file));
- project.setPageList(loaded.getPageList());
- }
-}
+package gov.epa.festc.core.proj;
+
+import gov.epa.festc.core.Project;
+
+import java.io.File;
+import java.io.FileReader;
+import java.io.IOException;
+
+import javax.xml.bind.JAXBContext;
+import javax.xml.bind.JAXBException;
+import javax.xml.bind.Marshaller;
+import javax.xml.bind.Unmarshaller;
+
+/**
+ * Saves elements of the application to disk so they can be loaded later.
+ *
+ * @author IE, UNC Chapel Hill
+ * @version $Revision$ $Date$
+ */
+public class ProjectLoader {
+ private JAXBContext context;
+ private Marshaller m;
+ private Unmarshaller um;
+
+ public ProjectLoader() throws JAXBException {
+ // create JAXB context and instantiate marshaller/unmarshaller
+ // SiteInfoGenFields: EPIC Site Info:
+ // Mcip2EpicFields: MCIP/EPIC to EPIC
+
+ // SiteFilesFields : EPIC Site file generation ( run two executables )
+ // SoilFilesFields : EPIC Soil file generation ( run soil match)
+ // ManageSpinupFields: Management file generation for spinup
+ // ManFileModFields: View/Edit EPIC Inputs
+ // EpicSpinupFields : Epic runs for spinup
+ // EpicYearlyAverage2CMAQFields: EPIC Yearly Output
+ // Epic2CMAQFields:
+ // Epic2SWATFields:
+ context = JAXBContext.newInstance(Project.class, Beld4DataGenFields.class, Mcip2EpicFields.class, SiteFilesFields.class,
+ SoilFilesFields.class, ManageSpinupFields.class, ManFileModFields.class, EpicSpinupFields.class,
+ EpicYearlyAverage2CMAQFields.class, ManageAppFields.class, EpicAppFields.class,
+ VisualizationFields.class, SiteInfoGenFields.class, Epic2CMAQFields.class,
+ Epic2SWATFields.class,DomainFields.class);
+ m = context.createMarshaller();
+ m.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
+ um = context.createUnmarshaller();
+ }
+
+ /**
+ * Saves the specified project to the specified file.
+ *
+ * @param file the file to save the model to
+ * @param project the project to save
+ * @throws IOException if there is an error duing saving
+ * @throws JAXBException
+ * @throws JAXBException if the xml mapping error occurs
+ */
+ public void save(File file, Project project) throws IOException, JAXBException {
+ m.marshal(project, file);
+ }
+
+ /**
+ * Loads the project data in specified file into the
+ * specified project.
+ *
+ * @param file the file containing the data to load
+ * @param project the project to load the data into
+ * @param manager used to create the Datasets
+ * @param creator the creator used to properly create the formula items
+ * @throws IOException if there is an error during loading.
+ * @throws JAXBException if the xml mapping error occurs
+ */
+ public void load(File file, Project project) throws JAXBException, IOException {
+ Project loaded = (Project) um.unmarshal(new FileReader(file));
+ project.setPageList(loaded.getPageList());
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/SiteFilesFields.java b/festc_core/src/gov/epa/festc/core/proj/SiteFilesFields.java
index 1b42673..883abb6 100644
--- a/festc_core/src/gov/epa/festc/core/proj/SiteFilesFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/SiteFilesFields.java
@@ -1,26 +1,26 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.SiteFilesFields")
-public class SiteFilesFields extends DomainFields {
-
- private String minAcres;
-
- public SiteFilesFields() {
- //NOTE: no-op
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return SiteFilesFields.class.getCanonicalName();
- }
-
- public void setMinAcres(String acres) {
- this.minAcres = acres;
- }
- public String getMinAcres() {
- return minAcres;
- }
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.SiteFilesFields")
+public class SiteFilesFields extends DomainFields {
+
+ private String minAcres;
+
+ public SiteFilesFields() {
+ //NOTE: no-op
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return SiteFilesFields.class.getCanonicalName();
+ }
+
+ public void setMinAcres(String acres) {
+ this.minAcres = acres;
+ }
+ public String getMinAcres() {
+ return minAcres;
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/SiteInfoGenFields.java b/festc_core/src/gov/epa/festc/core/proj/SiteInfoGenFields.java
index 6a0939a..416bbaa 100644
--- a/festc_core/src/gov/epa/festc/core/proj/SiteInfoGenFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/SiteInfoGenFields.java
@@ -1,34 +1,34 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.SiteInfoGenFields")
-public class SiteInfoGenFields extends PageFields{
-
- private String beld4ncf;
- private String minAcres;
-
- public SiteInfoGenFields() {
- //NOTE: no-op
- }
-
- public void setBeld4ncf(String beld4ncf) {
- this.beld4ncf = beld4ncf;
- }
- public String getBeld4ncf() {
- return beld4ncf;
- }
-
- public void setMinAcres(String acres) {
- this.minAcres = acres;
- }
- public String getMinAcres() {
- return minAcres;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return SiteInfoGenFields.class.getCanonicalName();
- }
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.SiteInfoGenFields")
+public class SiteInfoGenFields extends PageFields{
+
+ private String beld4ncf;
+ private String minAcres;
+
+ public SiteInfoGenFields() {
+ //NOTE: no-op
+ }
+
+ public void setBeld4ncf(String beld4ncf) {
+ this.beld4ncf = beld4ncf;
+ }
+ public String getBeld4ncf() {
+ return beld4ncf;
+ }
+
+ public void setMinAcres(String acres) {
+ this.minAcres = acres;
+ }
+ public String getMinAcres() {
+ return minAcres;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return SiteInfoGenFields.class.getCanonicalName();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/SoilFilesFields.java b/festc_core/src/gov/epa/festc/core/proj/SoilFilesFields.java
index 664d993..c7f1960 100644
--- a/festc_core/src/gov/epa/festc/core/proj/SoilFilesFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/SoilFilesFields.java
@@ -1,28 +1,28 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.SoilFilesFields")
-public class SoilFilesFields extends PageFields {
-
- private String finishedCrops;
-
- public SoilFilesFields() {
- //NOTE: no-op
- }
-
- public String getFinishedCrops() {
- return finishedCrops;
- }
-
- public void setFinishedCrops(String finishedCrops) {
- this.finishedCrops = finishedCrops;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return SoilFilesFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.SoilFilesFields")
+public class SoilFilesFields extends PageFields {
+
+ private String finishedCrops;
+
+ public SoilFilesFields() {
+ //NOTE: no-op
+ }
+
+ public String getFinishedCrops() {
+ return finishedCrops;
+ }
+
+ public void setFinishedCrops(String finishedCrops) {
+ this.finishedCrops = finishedCrops;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return SoilFilesFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/core/proj/VisualizationFields.java b/festc_core/src/gov/epa/festc/core/proj/VisualizationFields.java
index 46dd58a..18ba67f 100644
--- a/festc_core/src/gov/epa/festc/core/proj/VisualizationFields.java
+++ b/festc_core/src/gov/epa/festc/core/proj/VisualizationFields.java
@@ -1,73 +1,73 @@
-package gov.epa.festc.core.proj;
-
-import javax.xml.bind.annotation.XmlRootElement;
-
-@XmlRootElement(name = "gov.epa.festc.core.proj.VisualizationFields")
-public class VisualizationFields extends PageFields{
-
- private String mcipDataDir;
- private String beldDataDir;
- private String epicDataDir;
- private boolean mcipDataSelected;
- private boolean beldDataSelected;
- private boolean epicDataSelected;
-
- public VisualizationFields() {
- //NOTE: no-op
- }
-
- public String getMcipDataDir() {
- return mcipDataDir;
- }
-
- public void setMcipDataDir(String mcipDataDir) {
- this.mcipDataDir = mcipDataDir;
- }
-
- public String getBeldDataDir() {
- return beldDataDir;
- }
-
- public void setBeldDataDir(String beldDataDir) {
- this.beldDataDir = beldDataDir;
- }
-
- public String getEpicDataDir() {
- return epicDataDir;
- }
-
- public void setEpicDataDir(String epicDataDir) {
- this.epicDataDir = epicDataDir;
- }
-
- public boolean isMcipDataSelected() {
- return mcipDataSelected;
- }
-
- public void setMcipDataSelected(boolean mcipDataSelected) {
- this.mcipDataSelected = mcipDataSelected;
- }
-
- public boolean isBeldDataSelected() {
- return beldDataSelected;
- }
-
- public void setBeldDataSelected(boolean beldDataSelected) {
- this.beldDataSelected = beldDataSelected;
- }
-
- public boolean isEpicDataSelected() {
- return epicDataSelected;
- }
-
- public void setEpicDataSelected(boolean epicDataSelected) {
- this.epicDataSelected = epicDataSelected;
- }
-
- @Override
- public String getName() {
- // TODO Auto-generated method stub
- return VisualizationFields.class.getCanonicalName();
- }
-
-}
+package gov.epa.festc.core.proj;
+
+import javax.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "gov.epa.festc.core.proj.VisualizationFields")
+public class VisualizationFields extends PageFields{
+
+ private String mcipDataDir;
+ private String beldDataDir;
+ private String epicDataDir;
+ private boolean mcipDataSelected;
+ private boolean beldDataSelected;
+ private boolean epicDataSelected;
+
+ public VisualizationFields() {
+ //NOTE: no-op
+ }
+
+ public String getMcipDataDir() {
+ return mcipDataDir;
+ }
+
+ public void setMcipDataDir(String mcipDataDir) {
+ this.mcipDataDir = mcipDataDir;
+ }
+
+ public String getBeldDataDir() {
+ return beldDataDir;
+ }
+
+ public void setBeldDataDir(String beldDataDir) {
+ this.beldDataDir = beldDataDir;
+ }
+
+ public String getEpicDataDir() {
+ return epicDataDir;
+ }
+
+ public void setEpicDataDir(String epicDataDir) {
+ this.epicDataDir = epicDataDir;
+ }
+
+ public boolean isMcipDataSelected() {
+ return mcipDataSelected;
+ }
+
+ public void setMcipDataSelected(boolean mcipDataSelected) {
+ this.mcipDataSelected = mcipDataSelected;
+ }
+
+ public boolean isBeldDataSelected() {
+ return beldDataSelected;
+ }
+
+ public void setBeldDataSelected(boolean beldDataSelected) {
+ this.beldDataSelected = beldDataSelected;
+ }
+
+ public boolean isEpicDataSelected() {
+ return epicDataSelected;
+ }
+
+ public void setEpicDataSelected(boolean epicDataSelected) {
+ this.epicDataSelected = epicDataSelected;
+ }
+
+ @Override
+ public String getName() {
+ // TODO Auto-generated method stub
+ return VisualizationFields.class.getCanonicalName();
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/AboutDialog.java b/festc_core/src/gov/epa/festc/gui/AboutDialog.java
index 141dbec..9f98c3e 100644
--- a/festc_core/src/gov/epa/festc/gui/AboutDialog.java
+++ b/festc_core/src/gov/epa/festc/gui/AboutDialog.java
@@ -1,117 +1,117 @@
-package gov.epa.festc.gui;
-
-import gov.epa.festc.core.VersionInfo;
-
-import java.awt.BorderLayout;
-import java.awt.Container;
-import java.awt.Dialog;
-import java.awt.Frame;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-import javax.swing.JButton;
-import javax.swing.JDialog;
-import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-import javax.swing.WindowConstants;
-
-import org.jdesktop.swingx.JXHeader;
-
-import com.jgoodies.forms.factories.Borders;
-import com.jgoodies.forms.factories.FormFactory;
-import com.jgoodies.forms.layout.CellConstraints;
-import com.jgoodies.forms.layout.ColumnSpec;
-import com.jgoodies.forms.layout.FormLayout;
-import com.jgoodies.forms.layout.RowSpec;
-
-/**
- * @author IE, UNC
- */
-public class AboutDialog extends JDialog {
- //private static final long serialVersionUID = -3158674310794549095L;
- public AboutDialog(Frame owner) {
- super(owner);
- initComponents();
- xHeader1.setDescription("Version: " + VersionInfo.getVersion() + " " + VersionInfo.getDate());
- }
-
- public AboutDialog(Dialog owner) {
- super(owner);
- initComponents();
- xHeader1.setDescription("Version: " + VersionInfo.getVersion() + " " + VersionInfo.getDate());
- }
-
- private void okButtonActionPerformed(ActionEvent e) {
- this.dispose();
- }
-
- private void initComponents() {
- dialogPane = new JPanel();
- contentPanel = new JPanel();
- scrollPane1 = new JScrollPane();
- xHeader1 = new JXHeader();
- buttonBar = new JPanel();
- okButton = new JButton();
- CellConstraints cc = new CellConstraints();
-
- //======== this ========
- setTitle("About FEST-C");
- setResizable(false);
- setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
- Container contentPane = getContentPane();
- contentPane.setLayout(new BorderLayout());
-
- //======== dialogPane ========
- {
- dialogPane.setBorder(Borders.DIALOG_BORDER);
- dialogPane.setLayout(new BorderLayout());
-
- //======== contentPanel ========
- {
- contentPanel.setLayout(new FormLayout(
- "default:grow",
- "default"));
-
- //======== scrollPane1 ========
- {
- xHeader1.setTitle("Fertilizer Emission Scenario Tool for CMAQ (FEST-C)");
- scrollPane1.setViewportView(xHeader1);
- }
- contentPanel.add(scrollPane1, cc.xy(1, 1));
- }
- dialogPane.add(contentPanel, BorderLayout.CENTER);
-
- //======== buttonBar ========
- {
- buttonBar.setBorder(Borders.BUTTON_BAR_GAP_BORDER);
- buttonBar.setLayout(new FormLayout(
- new ColumnSpec[] {
- FormFactory.GLUE_COLSPEC,
- FormFactory.BUTTON_COLSPEC
- },
- RowSpec.decodeSpecs("pref")));
-
- //---- okButton ----
- okButton.setText("OK");
- okButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- okButtonActionPerformed(e);
- }
- });
- buttonBar.add(okButton, cc.xy(2, 1));
- }
- dialogPane.add(buttonBar, BorderLayout.SOUTH);
- }
- contentPane.add(dialogPane, BorderLayout.CENTER);
- pack();
- setLocationRelativeTo(getOwner());
- }
-
- private JPanel dialogPane;
- private JPanel contentPanel;
- private JScrollPane scrollPane1;
- private JXHeader xHeader1;
- private JPanel buttonBar;
- private JButton okButton;
-}
-
+package gov.epa.festc.gui;
+
+import gov.epa.festc.core.VersionInfo;
+
+import java.awt.BorderLayout;
+import java.awt.Container;
+import java.awt.Dialog;
+import java.awt.Frame;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+
+import javax.swing.JButton;
+import javax.swing.JDialog;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.WindowConstants;
+
+import org.jdesktop.swingx.JXHeader;
+
+import com.jgoodies.forms.factories.Borders;
+import com.jgoodies.forms.factories.FormFactory;
+import com.jgoodies.forms.layout.CellConstraints;
+import com.jgoodies.forms.layout.ColumnSpec;
+import com.jgoodies.forms.layout.FormLayout;
+import com.jgoodies.forms.layout.RowSpec;
+
+/**
+ * @author IE, UNC
+ */
+public class AboutDialog extends JDialog {
+ //private static final long serialVersionUID = -3158674310794549095L;
+ public AboutDialog(Frame owner) {
+ super(owner);
+ initComponents();
+ xHeader1.setDescription("Version: " + VersionInfo.getVersion() + " " + VersionInfo.getDate());
+ }
+
+ public AboutDialog(Dialog owner) {
+ super(owner);
+ initComponents();
+ xHeader1.setDescription("Version: " + VersionInfo.getVersion() + " " + VersionInfo.getDate());
+ }
+
+ private void okButtonActionPerformed(ActionEvent e) {
+ this.dispose();
+ }
+
+ private void initComponents() {
+ dialogPane = new JPanel();
+ contentPanel = new JPanel();
+ scrollPane1 = new JScrollPane();
+ xHeader1 = new JXHeader();
+ buttonBar = new JPanel();
+ okButton = new JButton();
+ CellConstraints cc = new CellConstraints();
+
+ //======== this ========
+ setTitle("About FEST-C");
+ setResizable(false);
+ setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
+ Container contentPane = getContentPane();
+ contentPane.setLayout(new BorderLayout());
+
+ //======== dialogPane ========
+ {
+ dialogPane.setBorder(Borders.DIALOG_BORDER);
+ dialogPane.setLayout(new BorderLayout());
+
+ //======== contentPanel ========
+ {
+ contentPanel.setLayout(new FormLayout(
+ "default:grow",
+ "default"));
+
+ //======== scrollPane1 ========
+ {
+ xHeader1.setTitle("Fertilizer Emission Scenario Tool for CMAQ (FEST-C)");
+ scrollPane1.setViewportView(xHeader1);
+ }
+ contentPanel.add(scrollPane1, cc.xy(1, 1));
+ }
+ dialogPane.add(contentPanel, BorderLayout.CENTER);
+
+ //======== buttonBar ========
+ {
+ buttonBar.setBorder(Borders.BUTTON_BAR_GAP_BORDER);
+ buttonBar.setLayout(new FormLayout(
+ new ColumnSpec[] {
+ FormFactory.GLUE_COLSPEC,
+ FormFactory.BUTTON_COLSPEC
+ },
+ RowSpec.decodeSpecs("pref")));
+
+ //---- okButton ----
+ okButton.setText("OK");
+ okButton.addActionListener(new ActionListener() {
+ public void actionPerformed(ActionEvent e) {
+ okButtonActionPerformed(e);
+ }
+ });
+ buttonBar.add(okButton, cc.xy(2, 1));
+ }
+ dialogPane.add(buttonBar, BorderLayout.SOUTH);
+ }
+ contentPane.add(dialogPane, BorderLayout.CENTER);
+ pack();
+ setLocationRelativeTo(getOwner());
+ }
+
+ private JPanel dialogPane;
+ private JPanel contentPanel;
+ private JScrollPane scrollPane1;
+ private JXHeader xHeader1;
+ private JPanel buttonBar;
+ private JButton okButton;
+}
+
diff --git a/festc_core/src/gov/epa/festc/gui/Beld4DataGenPanel.java b/festc_core/src/gov/epa/festc/gui/Beld4DataGenPanel.java
index 9bce3bf..9a636ec 100644
--- a/festc_core/src/gov/epa/festc/gui/Beld4DataGenPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/Beld4DataGenPanel.java
@@ -32,7 +32,7 @@
import gov.epa.festc.util.SpringLayoutGenerator;
import simphony.util.messages.MessageCenter;
-public class Beld4DataGenPanel extends UtilFieldsPanel implements PlotEventListener{
+public class Beld4DataGenPanel extends UtilFieldsPanel implements PlotEventListener {
/**
*
@@ -40,17 +40,17 @@ public class Beld4DataGenPanel extends UtilFieldsPanel implements PlotEventListe
private static final long serialVersionUID = 1403169880186710184L;
private MessageCenter msg;
-// private FestcApplication app;
+ // private FestcApplication app;
private Beld4DataGenFields fields;
- //private DomainFields domain;
- private JCheckBox nlcdBox;
+ // private DomainFields domain;
+ private JCheckBox nlcdBox;
private JCheckBox modisBox;
-// private JCheckBox beld4ncBox;
-// private JCheckBox nc2apiBox;
+ // private JCheckBox beld4ncBox;
+ // private JCheckBox nc2apiBox;
private JComboBox nlcdYear;
private JTextField inputDir;
private JButton inputDirBrowser;
-
+
public Beld4DataGenPanel(FestcApplication festcApp) {
app = festcApp;
msg = app.getMessageCenter();
@@ -59,24 +59,24 @@ public Beld4DataGenPanel(FestcApplication festcApp) {
app.addPlotListener(this);
add(createPanel());
}
-
+
private JPanel createPanel() {
JPanel main = new JPanel();
- try{
+ try {
init();
main.setLayout(new BoxLayout(main, BoxLayout.Y_AXIS));
main.add(getNorthPanel());
main.add(getCenterPanel());
main.add(getSouthPanel());
main.add(messageBox());
-
+
} catch (Exception exc) {
exc.printStackTrace();
}
return main;
}
-
+
private JPanel getNorthPanel() {
JPanel panel = new JPanel();
JLabel title = new JLabel(Constants.BELD4_GEN, SwingConstants.CENTER);
@@ -87,41 +87,42 @@ private JPanel getNorthPanel() {
return panel;
}
-
+
private JPanel getCenterPanel() {
JPanel panel = new JPanel(new SpringLayout());
SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
+
JPanel dataPanel = new JPanel();
- this.nlcdBox = new JCheckBox("NLCD ", true);
+ this.nlcdBox = new JCheckBox("NLCD ", true);
this.modisBox = new JCheckBox("MODIS ", true);
-// this.beld4ncBox = new JCheckBox("Run_beld4nc", true);
-// this.nc2apiBox = new JCheckBox("Run_nc2api", true);
-
+ // this.beld4ncBox = new JCheckBox("Run_beld4nc", true);
+ // this.nc2apiBox = new JCheckBox("Run_nc2api", true);
+
dataPanel.add(this.nlcdBox);
dataPanel.add(this.modisBox);
-// dataPanel.add(this.beld4ncBox);
-// dataPanel.add(this.nc2apiBox);
-
- JPanel yearPanel = new JPanel( );
+ // dataPanel.add(this.beld4ncBox);
+ // dataPanel.add(this.nc2apiBox);
+
+ JPanel yearPanel = new JPanel();
nlcdYear = new JComboBox(Constants.NLCDYEARS);
- //nlcdYear.setEditable(false);
+ // nlcdYear.setEditable(false);
yearPanel.add(nlcdYear);
-
+
JPanel inputDirPanel = new JPanel();
inputDir = new JTextField(40);
inputDir.setToolTipText("I.E. ../data/nlcd_modis_files_2006.txt");
-
- inputDirBrowser = new JButton(BrowseAction.browseAction(this, app.getCurrentDir(),"NLCD/MODIS list file", inputDir));
+
+ inputDirBrowser = new JButton(
+ BrowseAction.browseAction(this, app.getCurrentDir(), "NLCD/MODIS list file", inputDir));
inputDirPanel.add(inputDir);
- inputDirPanel.add(inputDirBrowser);
+ inputDirPanel.add(inputDirBrowser);
layout.addLabelWidgetPair("Grid Description: ", getGridDescPanel(false), panel);
layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
layout.addLabelWidgetPair("NLCD/MODIS Data Year:", yearPanel, panel);
layout.addLabelWidgetPair("NLCD/MODIS List File:", inputDirPanel, panel);
layout.addLabelWidgetPair("Data Selection:", dataPanel, panel);
- //layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
+ // layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
layout.makeCompactGrid(panel, 5, 2, // number of rows and cols
10, 10, // initial X and Y
@@ -129,9 +130,7 @@ private JPanel getCenterPanel() {
return panel;
}
-
-
private JPanel getSouthPanel() {
JPanel panel = new JPanel();
JButton display = new JButton(runAction());
@@ -140,242 +139,346 @@ private JPanel getSouthPanel() {
panel.setBorder(BorderFactory.createEmptyBorder(30, 0, 10, 0));
return panel;
- }
-
+ }
+
private Action runAction() {
return new AbstractAction("Run") {
private static final long serialVersionUID = 8573618661168062193L;
public void actionPerformed(ActionEvent e) {
-
- try {
+
+ try {
generateRunScript();
} catch (Exception exc) {
- //msg.error("ERROR", exc);
+ // msg.error("ERROR", exc);
app.showMessage("Run script", exc.getMessage());
}
}
};
}
-
+
private void generateRunScript() throws Exception {
String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- if (baseDir == null || baseDir.isEmpty())
+ if (baseDir == null || baseDir.isEmpty())
throw new Exception("Base dir is empty, please specify it in the configuration file!");
-
+
String scenarioDir = this.scenarioDir.getText();
- if (scenarioDir == null || scenarioDir.isEmpty())
+ if (scenarioDir == null || scenarioDir.isEmpty())
throw new Exception("Scenario dir is empty!");
-// if (scenarioDir.trim().contains(" ") )
-// throw new Exception(" New scenario name has space in between.");
-//
+ // if (scenarioDir.trim().contains(" ") )
+ // throw new Exception(" New scenario name has space in between.");
+ //
validateGrids();
-
-
- String dYear = (String)this.nlcdYear.getSelectedItem();
- if ( dYear.trim().isEmpty() )
- throw new Exception("NLCD/MODIS data year is empty!");
-
+
+ String dYear = (String) this.nlcdYear.getSelectedItem();
+ if (dYear.trim().isEmpty())
+ throw new Exception("NLCD/MODIS data year is empty!");
+
String inputFile = this.inputDir.getText();
- if (inputFile == null || inputFile.isEmpty())
- throw new Exception("Please select input file!");
-
- String sahome = Constants.getProperty(Constants.SA_HOME, msg);
- if (sahome == null || sahome.trim().isEmpty() || !(new File(sahome).exists()))
- throw new Exception("SA dir is empty, please specify it in the configuration file!");
-
- outMessages += ls + "Epic base: " + baseDir + ls;
+ if (inputFile == null || inputFile.isEmpty())
+ throw new Exception("Please select input file!");
+
+ String sahome = Constants.getProperty(Constants.SA_HOME, msg);
+ // if (sahome == null || sahome.trim().isEmpty() || !(new
+ // File(sahome).exists()))
+ if (sahome == null)
+ throw new Exception("SA dir is empty, please specify it in the configuration file!");
+
+ outMessages += ls + "Epic base: " + baseDir + ls;
outMessages += "SA home: " + sahome + ls;
-
- final String file = writeRunScriptScript(baseDir, scenarioDir, sahome, dYear.trim());
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+
+ final String jobFile = writeRunScriptScript(baseDir, scenarioDir, sahome, dYear.trim());
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir);
+ } else {
+ batchFile = null;
+ }
Thread populateThread = new Thread(new Runnable() {
public void run() {
- runScript(file);
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ // final String batchFile = writeBatchFile(jobFile,
+ // scenarioDir);
+ runBatchScript(batchFile, jobFile);
+ }
+
}
});
populateThread.start();
}
-
- protected String writeRunScriptScript(
- String baseDir,
- String scenarioDir,
- String sahome, String dYear ) throws Exception {
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or java.sql.Timestamp!
+ // This is legacy code that has been moved to it's own method
+ protected void writeScriptFile(String file, String content) {
+
+ String mesg = "";
+
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(content);
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ // printStackTrace();
+ // g.error("Error generating EPIC script file", e);
+ app.showMessage("Write script", e.getMessage());
+ }
+
+ app.showMessage("Write script", mesg);
+ }
+
+ protected String writeBatchFile(String jobFile, String scenarioDir) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
- String file = scenarioDir.trim() + "/scripts/";
- file = file.trim() + "generateBeld4Data_"+ gridName.getText().trim()+ "_" + timeStamp +".csh";
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitBeld4Data_" + timeStamp + ".csh";
StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
- //String netcdfout = (netcdfFile.getText() == null || netcdfFile.getText().trim().isEmpty()) ? "NONE" : netcdfFile.getText().trim();
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+ protected String writeRunScriptScript(String baseDir, String scenarioDir, String sahome, String dYear)
+ throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String file = scenarioDir.trim() + "/scripts/";
+ file = file.trim() + "generateBeld4Data_" + gridName.getText().trim() + "_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+
+ // String netcdfout = (netcdfFile.getText() == null ||
+ // netcdfFile.getText().trim().isEmpty()) ? "NONE" :
+ // netcdfFile.getText().trim();
sb.append(getScriptHeader() + ls);
sb.append("#" + ls + "# Set up runtime environment" + ls + "#" + ls);
sb.append("source " + sahome.trim() + Constants.SA_SETUP_FILE + ls + ls);
-
+
sb.append(ls + "#" + ls);
sb.append("# Define environment variables" + ls);
sb.append("#" + ls + ls);
sb.append("setenv EPIC_DIR " + baseDir + ls);
sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv SA_HOME " + sahome +ls);
+ sb.append("setenv SA_HOME " + sahome + ls);
sb.append("setenv COMM_DIR $EPIC_DIR/common_data " + ls);
sb.append("cd $SCEN_DIR/scripts " + ls);
-
+
sb.append("#" + ls + "# Define domain grids" + ls + "#" + ls);
- //sb.append("setenv GRID_PROJ \"+proj=lcc +a=6370000.0 +b=6370000.0 +lat_1=33 +lat_2=45 +lat_0=40 +lon_0=-97\"" + ls + ls);
+ // sb.append("setenv GRID_PROJ \"+proj=lcc +a=6370000.0 +b=6370000.0
+ // +lat_1=33 +lat_2=45 +lat_0=40 +lon_0=-97\"" + ls + ls);
sb.append("setenv GRID_PROJ \"" + proj4proj.getText().trim() + "\"" + ls);
- sb.append("setenv GRID_ROWS " + ((Number)rows.getValue()).intValue() + ls);
- sb.append("setenv GRID_COLUMNS " + ((Number)cols.getValue()).intValue() + ls + ls);
- sb.append("setenv GRID_XMIN " + ((Number)xmin.getValue()).doubleValue() + ls);
- sb.append("setenv GRID_YMIN " + ((Number)ymin.getValue()).doubleValue() + ls + ls);
- sb.append("setenv GRID_XCELLSIZE " + ((Number)xSize.getValue()).doubleValue() + ls);
- sb.append("setenv GRID_YCELLSIZE " + ((Number)ySize.getValue()).doubleValue() + ls + ls);
+ sb.append("setenv GRID_ROWS " + ((Number) rows.getValue()).intValue() + ls);
+ sb.append("setenv GRID_COLUMNS " + ((Number) cols.getValue()).intValue() + ls + ls);
+ sb.append("setenv GRID_XMIN " + ((Number) xmin.getValue()).doubleValue() + ls);
+ sb.append("setenv GRID_YMIN " + ((Number) ymin.getValue()).doubleValue() + ls + ls);
+ sb.append("setenv GRID_XCELLSIZE " + ((Number) xSize.getValue()).doubleValue() + ls);
+ sb.append("setenv GRID_YCELLSIZE " + ((Number) ySize.getValue()).doubleValue() + ls + ls);
String gridN = gridName.getText() == null ? "" : gridName.getText().trim();
sb.append("setenv GRID_NAME \"" + gridN + "\"" + ls + ls);
-
- sb.append("# Define input file which contains NLCD and MODIS land cover files " + ls + ls );
+
+ sb.append("# Define input file which contains NLCD and MODIS land cover files " + ls + ls);
sb.append("setenv INPUT_FILE_LIST " + inputDir.getText() + ls + ls);
-
- String nlcdYN = nlcdBox.isSelected()? "YES" : "NO";
- String modisYN = modisBox.isSelected()? "YES" : "NO";
-// String beld4nc = nlcdBox.isSelected()? "YES" : "NO";
-// String nc2ioapi = modisBox.isSelected()? "YES" : "NO";
- sb.append("# INCLUDE data selection " + ls );
- sb.append("setenv INCLUDE_NLCD " + nlcdYN + ls );
+
+ String nlcdYN = nlcdBox.isSelected() ? "YES" : "NO";
+ String modisYN = modisBox.isSelected() ? "YES" : "NO";
+ // String beld4nc = nlcdBox.isSelected()? "YES" : "NO";
+ // String nc2ioapi = modisBox.isSelected()? "YES" : "NO";
+ sb.append("# INCLUDE data selection " + ls);
+ sb.append("setenv INCLUDE_NLCD " + nlcdYN + ls);
sb.append("setenv INCLUDE_MODIS " + modisYN + ls + ls);
-// sb.append("setenv BELD4NC_YN " + beld4nc + ls );
-// sb.append("setenv BELD4IO_YN " + nc2ioapi + ls + ls);
-
- sb.append("# Define county shapefile " + ls );
- sb.append("setenv COUNTY_SHAPEFILE $SA_HOME/data/county_pophu02_48st.shp" + ls + ls);
- sb.append("setenv COUNTY_FIPS_ATTR CNTYID" + ls + ls );
- sb.append("# BELD3 FIA tree fractions at county level for 1990s" + ls );
+ // sb.append("setenv BELD4NC_YN " + beld4nc + ls );
+ // sb.append("setenv BELD4IO_YN " + nc2ioapi + ls + ls);
+
+ sb.append("# Define county shapefile " + ls);
+ sb.append("setenv COUNTY_SHAPEFILE $SA_HOME/data/county_pophu02_48st.shp" + ls + ls);
+ sb.append("setenv COUNTY_FIPS_ATTR CNTYID" + ls + ls);
+ sb.append("# BELD3 FIA tree fractions at county level for 1990s" + ls);
sb.append("setenv US_COUNTY_FIA_FILE $SA_HOME/data/beld3-fia.dat" + ls + ls);
-
+
sb.append("# new NASS crop/pasture fractions at county level for 2001 or 2006" + ls);
- sb.append("setenv US_COUNTY_NASS_FILE $SA_HOME/data/nass" + dYear +"_beld4_ag.dat" + ls + ls);
-
+ sb.append("setenv US_COUNTY_NASS_FILE $SA_HOME/data/nass" + dYear + "_beld4_ag.dat" + ls + ls);
+
sb.append("# CAN crop division or census division shapefile " + ls);
sb.append("# Only divisions have crop data are incldued " + ls);
- sb.append("setenv CAN_COUNTY_SHAPEFILE $SA_HOME/data/can" + dYear +"_cd_sel.shp" + ls);
- sb.append("setenv CAN_COUNTY_FIPS_ATTR AGUID " + ls + ls );
-
+ sb.append("setenv CAN_COUNTY_SHAPEFILE $SA_HOME/data/can" + dYear + "_cd_sel.shp" + ls);
+ sb.append("setenv CAN_COUNTY_FIPS_ATTR AGUID " + ls + ls);
+
sb.append("# CAN crop fraction table at crop divisions for 2001 or 2006" + ls);
- sb.append("setenv CAN_CROP_FILE $SA_HOME/data/can" + dYear +"_beld4_ag.dat" + ls +ls);
-
+ sb.append("setenv CAN_CROP_FILE $SA_HOME/data/can" + dYear + "_beld4_ag.dat" + ls + ls);
+
sb.append("#table contains class names for land cover data and canopy FIA trees" + ls + ls);
sb.append("setenv BELD4_CLASS_NAMES $SA_HOME/data/beld4_class_names_40classes.txt" + ls + ls);
-
+
sb.append("# Output files" + ls);
- sb.append("setenv OUTPUT_LANDUSE_TEXT_FILE $SCEN_DIR/share_data/beld4_" + gridN +"_"+ dYear +".txt" + ls);
- sb.append("setenv OUTPUT_LANDUSE_NETCDF_FILE $SCEN_DIR/share_data/beld4_" + gridN +"_"+ dYear + ".nc" + ls + ls);
+ sb.append(
+ "setenv OUTPUT_LANDUSE_TEXT_FILE $SCEN_DIR/share_data/beld4_" + gridN + "_" + dYear + ".txt" + ls);
+ sb.append("setenv OUTPUT_LANDUSE_NETCDF_FILE $SCEN_DIR/share_data/beld4_" + gridN + "_" + dYear + ".nc" + ls
+ + ls);
sb.append("time $SA_HOME/bin/64bits/computeGridLandUse_beld4.exe" + ls + ls);
-
+
sb.append(" if ( $status == 0 ) then " + ls);
sb.append(" echo ==== Finished Beld4 data generation. " + ls);
sb.append(" else " + ls);
sb.append(" echo ==== Error in Beld4 data generation." + ls + ls);
- sb.append(" echo " + ls );
+ sb.append(" echo " + ls);
sb.append(" endif " + ls);
-
-
- sb.append(" setenv INFILE ${OUTPUT_LANDUSE_NETCDF_FILE}" + ls );
- sb.append(" setenv OUTDIR $SCEN_DIR/output4CMAQ/app/toCMAQ"+ ls +ls );
-
- sb.append(" if ( ! -e $OUTDIR ) mkdir -p $OUTDIR" + ls );
- sb.append(" setenv OUTFILE ${OUTDIR}/beld4_"+ gridN +"_"+ dYear + ".ncf " + ls );
-
- sb.append(" if ( ! -e $INFILE ) then " + ls );
- sb.append(" echo $INFILE ' doesn't exist! ' " + ls );
- sb.append(" exit(1) " + ls );
- sb.append(" endif " + ls + ls );
- //sb.append(" echo 'Output file name: ' $OUTFILE " + ls + ls );
-
- sb.append(" time $EPIC_DIR/util/misc/beld_nc2ioapi/Beld_nc2ioapi.exe " + ls );
- sb.append(" if ( $status == 0 ) then " + ls );
- sb.append(" echo ==== Finished Beld4 to Ioapi transformation. " + ls );
- sb.append(" endif" + ls );
-
+
+ sb.append(" setenv INFILE ${OUTPUT_LANDUSE_NETCDF_FILE}" + ls);
+ sb.append(" setenv OUTDIR $SCEN_DIR/output4CMAQ/app/toCMAQ" + ls + ls);
+
+ sb.append(" if ( ! -e $OUTDIR ) mkdir -p $OUTDIR" + ls);
+ sb.append(" setenv OUTFILE ${OUTDIR}/beld4_" + gridN + "_" + dYear + ".ncf " + ls);
+
+ sb.append(" if ( ! -e $INFILE ) then " + ls);
+ sb.append(" echo $INFILE ' does not exist! ' " + ls);
+ sb.append(" exit(1) " + ls);
+ sb.append(" endif " + ls + ls);
+ // sb.append(" echo 'Output file name: ' $OUTFILE " + ls + ls );
+
+ sb.append(" time $EPIC_DIR/util/misc/beld_nc2ioapi/Beld_nc2ioapi.exe " + ls);
+ sb.append(" if ( $status == 0 ) then " + ls);
+ sb.append(" echo ==== Finished Beld4 to Ioapi transformation. " + ls);
+ sb.append(" endif" + ls);
+
sb.append("#===================================================================" + ls);
-
+
String mesg = "";
try {
File script = new File(file);
Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- mesg = "Created a script file: " + file + ls;
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception(e.getMessage());
- }
-
-
- String ncfile = scenarioDir.trim() + "/share_data/beld4_" + gridN +"_"+ dYear +".txt";
- //String nctxtfile = scenarioDir.trim() + "/share_data/beld4_" + gridN +"_"+ dYear + ".nc";
- String ioapifile = scenarioDir.trim() + "/output4CMAQ/app/toCMAQ/beld4_"+ gridN +"_"+ dYear + ".ncf ";
-
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ mesg = "Created a script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
+
+ String ncfile = scenarioDir.trim() + "/share_data/beld4_" + gridN + "_" + dYear + ".txt";
+ // String nctxtfile = scenarioDir.trim() + "/share_data/beld4_" + gridN
+ // +"_"+ dYear + ".nc";
+ String ioapifile = scenarioDir.trim() + "/output4CMAQ/app/toCMAQ/beld4_" + gridN + "_" + dYear + ".ncf ";
+
outMessages += "Script file: " + file + ls;
outMessages += "Output netcdf file: " + ncfile + ls;
outMessages += "Output ioapi file: " + ioapifile + ls;
-
- app.showMessage("Write script", mesg);
+
+ app.showMessage("Write script", mesg);
return file;
}
-
+
private String getScriptHeader() {
StringBuilder sb = new StringBuilder();
String ls = "\n";
sb.append("#!/bin/csh -f" + ls);
sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: generate landuse information for a given modeling " + ls );
- sb.append("# domain grids from:" + ls);
+ sb.append("# Purpose: generate landuse information for a given modeling " + ls);
+ sb.append("# domain grids from:" + ls);
- sb.append("# 1. USGS NLCD 30m Landuse Files " + ls);
- sb.append("# 2. USGS NLCD 30m Urban Imperviousness files " + ls);
- sb.append("# 3. USGS NLCD 30m Tree Canopy Files " + ls);
- sb.append("# 4. MODIS Landcove files " + ls + ls );
+ sb.append("# 1. USGS NLCD 30m Landuse Files " + ls);
+ sb.append("# 2. USGS NLCD 30m Urban Imperviousness files " + ls);
+ sb.append("# 3. USGS NLCD 30m Tree Canopy Files " + ls);
+ sb.append("# 4. MODIS Landcove files " + ls + ls);
sb.append("# NLCD data can be downloaded from: " + ls);
- sb.append("# http://www.mrlc.gov/nlcd2001.php " + ls);
- sb.append("# MODIS land cover tiles (e.g. MCD12Q1) can be downloaded from:" + ls);
- sb.append("# http://ladsweb.nascom.nasa.gov/data/search.html" + ls + ls);
-
- sb.append("# Crop and FIA data used for more crop and tree classes " + ls);
+ sb.append("# http://www.mrlc.gov/nlcd2001.php " + ls);
+ sb.append("# MODIS land cover tiles (e.g. MCD12Q1) can be downloaded from:" + ls);
+ sb.append("# http://ladsweb.nascom.nasa.gov/data/search.html" + ls + ls);
+
+ sb.append("# Crop and FIA data used for more crop and tree classes " + ls);
sb.append("# 1. US FIA tree species fractions at county (from census data) " + ls);
sb.append("# 2. US NASS crop fractions at county " + ls);
sb.append("# 3. CAN crop fractions at crop divisions " + ls);
- sb.append("# 4. Class names for all crops and trees " + ls +ls);
-
- sb.append("# Shapefiles used:" + ls);
+ sb.append("# 4. Class names for all crops and trees " + ls + ls);
+
+ sb.append("# Shapefiles used:" + ls);
sb.append("# 1. US county shapefile and ID attribute" + ls);
sb.append("# 2. CAN census division shapefile and ID attribute " + ls);
-
+
sb.append("# Written by: L. R., 2012-2013 " + ls);
sb.append("# Updated by: D. Yang, 2017 " + ls);
- sb.append("# 1. Transfer netcdf to ioapi " + ls);
+ sb.append("# 1. Transfer netcdf to ioapi " + ls);
sb.append("#" + ls);
sb.append("# Call program: computeGridLandUse.exe" + ls);
- sb.append("# Needed environment variables included in the script file to run." + ls);
- sb.append("#" + ls);
+ sb.append("# Needed environment variables included in the script file to run." + ls);
+ sb.append("#" + ls);
sb.append("#***************************************************************************************" + ls + ls);
-
+
return sb.toString();
}
-
+
private void runScript(final String file) {
- String log = file + ".log";
+ String log = file + ".log";
outMessages += "Log file: " + log + ls;
-
+
runMessages.setText(outMessages);
runMessages.validate();
FileRunner.runScript(file, log, msg);
}
-
+
+ private void runBatchScript(final String batchFile, final String jobFile) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qBeld4 = Constants.getProperty(Constants.QUEUE_BELD4_CMD, msg);
+
+ File script = new File(batchFile.replaceAll("\\\\", "\\\\\\\\"));
+
+ sb.append(qcmd + " " + qBeld4 + " -o " + log + " " + script.getAbsolutePath());
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
@Override
public void newProjectCreated() {
domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
@@ -388,13 +491,13 @@ public void newProjectCreated() {
proj4proj.setText(domain.getProj());
gridName.setText(domain.getGridName());
scenarioDir.setText(domain.getScenarioDir());
- String nlcdY = domain.getNlcdYear();
+ String nlcdY = domain.getNlcdYear();
nlcdYear.setSelectedItem(nlcdY);
- String sahome = Constants.getProperty(Constants.SA_HOME, msg);
+ String sahome = Constants.getProperty(Constants.SA_HOME, msg);
inputDir.setText(sahome.trim() + "/data/nlcd_modis_files_" + nlcdY + ".txt");
-
+
runMessages.setText("");
- if ( fields == null ) {
+ if (fields == null) {
fields = new Beld4DataGenFields();
app.getProject().addPage(fields);
}
@@ -404,11 +507,11 @@ public void newProjectCreated() {
public void projectLoaded() {
fields = (Beld4DataGenFields) app.getProject().getPage(fields.getName());
domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if( fields != null ) {
+ if (fields != null) {
String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length()>0)
+ if (scenloc != null && scenloc.trim().length() > 0)
this.scenarioDir.setText(scenloc);
- else
+ else
this.scenarioDir.setText(fields.getScenarioDir());
this.runMessages.setText(fields.getMessage());
rows.setValue(fields.getRows());
@@ -418,42 +521,54 @@ public void projectLoaded() {
xSize.setValue(fields.getXcellSize());
ySize.setValue(fields.getYcellSize());
proj4proj.setText(fields.getProj());
- gridName.setText(fields.getGridName());
+ gridName.setText(fields.getGridName());
nlcdYear.setSelectedItem(domain.getNlcdYear());
inputDir.setText(fields.getNLCDfile());
nlcdBox.setSelected(fields.isNlcdDataSelected());
modisBox.setSelected(fields.isModisDataSelected());
-
- }else {
+
+ } else {
newProjectCreated();
- }
- //setFalseEditable();
+ }
+ // setFalseEditable();
}
@Override
public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( rows != null ) fields.setRows(Integer.parseInt(rows.getText() == null? "0" : rows.getValue()+""));
- if ( cols != null ) fields.setCols(Integer.parseInt(cols.getText() == null? "0" : cols.getValue()+""));
- if ( xSize != null ) fields.setXcellSize(Float.parseFloat(xSize.getText() == null? "0" : xSize.getValue()+""));
- if ( ySize != null ) fields.setYcellSize(Float.parseFloat(ySize.getText() == null? "0" : ySize.getValue()+""));
- if ( xmin != null ) fields.setXmin(Float.parseFloat(xmin.getText() == null? "0" : xmin.getValue()+""));
- if ( ymin != null ) fields.setYmin(Float.parseFloat(ymin.getText() == null? "0" : ymin.getValue()+""));
- if ( proj4proj != null ) fields.setProj(proj4proj.getText() == null? "" : proj4proj.getText());
- if ( gridName != null ) fields.setGridName(gridName.getText()== null? "" : gridName.getText());
- if ( runMessages != null ) fields.setMessage(runMessages.getText().trim());
- if ( nlcdBox != null ) fields.setNlcdDataSelected(nlcdBox.isSelected());
- if ( modisBox != null ) fields.setModisDataSelected(modisBox.isSelected());
-
- if ( nlcdYear != null ) {
+ if (scenarioDir != null)
+ domain.setScenarioDir(scenarioDir.getText());
+ if (scenarioDir != null)
+ fields.setScenarioDir(scenarioDir.getText());
+ if (rows != null)
+ fields.setRows(Integer.parseInt(rows.getText() == null ? "0" : rows.getValue() + ""));
+ if (cols != null)
+ fields.setCols(Integer.parseInt(cols.getText() == null ? "0" : cols.getValue() + ""));
+ if (xSize != null)
+ fields.setXcellSize(Float.parseFloat(xSize.getText() == null ? "0" : xSize.getValue() + ""));
+ if (ySize != null)
+ fields.setYcellSize(Float.parseFloat(ySize.getText() == null ? "0" : ySize.getValue() + ""));
+ if (xmin != null)
+ fields.setXmin(Float.parseFloat(xmin.getText() == null ? "0" : xmin.getValue() + ""));
+ if (ymin != null)
+ fields.setYmin(Float.parseFloat(ymin.getText() == null ? "0" : ymin.getValue() + ""));
+ if (proj4proj != null)
+ fields.setProj(proj4proj.getText() == null ? "" : proj4proj.getText());
+ if (gridName != null)
+ fields.setGridName(gridName.getText() == null ? "" : gridName.getText());
+ if (runMessages != null)
+ fields.setMessage(runMessages.getText().trim());
+ if (nlcdBox != null)
+ fields.setNlcdDataSelected(nlcdBox.isSelected());
+ if (modisBox != null)
+ fields.setModisDataSelected(modisBox.isSelected());
+
+ if (nlcdYear != null) {
String dYear = (String) this.nlcdYear.getSelectedItem();
domain.setNlcdYear(dYear);
}
- if ( inputDir != null ) fields.setNLCDfile(inputDir.getText().trim());
-
- }
-
-}
+ if (inputDir != null)
+ fields.setNLCDfile(inputDir.getText().trim());
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/gui/CreateAppManFilesPanel.java b/festc_core/src/gov/epa/festc/gui/CreateAppManFilesPanel.java
index 6401e02..84270cb 100644
--- a/festc_core/src/gov/epa/festc/gui/CreateAppManFilesPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/CreateAppManFilesPanel.java
@@ -152,13 +152,35 @@ else if (sFYear != null && !sFYear.trim().isEmpty()
outMessages += ls + "Epic base: " + baseDir + ls;
outMessages += "Fertlizer year: " + fYear + ls;
- final String file = writeRunScript(baseDir, scenarioDir, seCropsString, cropIDs, fYear);
+ final String jobFile = writeRunScript(baseDir, scenarioDir, seCropsString, cropIDs, fYear);
+
+ String cropNums = getChosenCropNums();
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir);
+ } else {
+ batchFile = null;
+ }
+
Thread populateThread = new Thread(new Runnable() {
public void run() {
- runScript(file);
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile, cropNums);
+ }
}
});
populateThread.start();
+//
+// Thread populateThread = new Thread(new Runnable() {
+// public void run() {
+// runScript(file);
+// }
+// });
+// populateThread.start();
}
private void runScript(final String file) {
@@ -171,6 +193,33 @@ private void runScript(final String file) {
FileRunner.runScript(file, log, msg);
}
+ private void runBatchScript(final String batchFile, final String jobFile, final String chosenCrops) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qManApp = Constants.getProperty(Constants.QUEUE_MAN_APP, msg);
+ if (qcmd.contains("sbatch")) {
+ // SLURM
+ sb.append("sbatch --job-name=EPICManAppArrayJob --output=runEpicManApp_JobArray_%A_%a.out --array="
+ + chosenCrops + " " + qManApp + " " + batchFile + ls);
+ } else if (qcmd.contains("qsub")) {
+ // PBS
+ sb.append("qsub -N EPICManAppArrayJob -t " + chosenCrops + " " + qManApp + " " + batchFile + ls);
+ } else if (qcmd.contains("bsub")) {
+ // LSF
+ sb.append("bsub -J EPICManAppArrayJob[" + chosenCrops + "] " + qManApp + " " + batchFile + ls);
+ }
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
protected String writeRunScript(
String baseDir,
String scenarioDir,
@@ -185,36 +234,236 @@ protected String writeRunScript(
if ( !file.endsWith(System.getProperty("file.separator")))
file += System.getProperty("file.separator");
file += "runEPICManApp_" + timeStamp + ".csh";
- String mesg = "";
- try {
- StringBuilder sb = new StringBuilder();
+
+ StringBuilder sb = new StringBuilder();
+
+ //scriptContent contains all run instructions for direct submit, or job array
+ // submit instructions if using a workload manager
+ String scriptContent = null;
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ if (qcmd == null || qcmd.trim().isEmpty()){
+ //no batch system - generate script using legacy code
sb.append(getScriptHeader());
sb.append(getEnvironmentDef(baseDir, scenarioDir, fYear));
- sb.append(getManSu(cropNames, cropIDs));
+ sb.append(getManSu(cropNames, cropIDs, fYear));
//tile drain script
sb.append(getRunTD());
-
- File script = new File(file);
-
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
-
- mesg += "Created a script file: " + file + "\n";
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
-
- } catch (IOException e) {
- //e.printStackTrace();
- throw new Exception(e.getMessage());
- }
+ scriptContent = sb.toString();
+ } else {
+ //assume batch system that supports job arrays (SLURM, PBS, LSF, etc.)
+ //create job array script
+ scriptContent = createArrayTaskScript(baseDir, scenarioDir, fYear);
+ }
- app.showMessage("Write script", mesg);
+ writeScriptFile(file, scriptContent);
+
+// String mesg = "";
+// try {
+// StringBuilder sb = new StringBuilder();
+// sb.append(getScriptHeader());
+// sb.append(getEnvironmentDef(baseDir, scenarioDir, fYear));
+// sb.append(getManSu(cropNames, cropIDs));
+// //tile drain script
+// sb.append(getRunTD());
+//
+// File script = new File(file);
+//
+// BufferedWriter out = new BufferedWriter(new FileWriter(script));
+// out.write(sb.toString());
+// out.close();
+//
+// mesg += "Created a script file: " + file + "\n";
+// boolean ok = script.setExecutable(true, false);
+// mesg += "Set the script file to be executable: ";
+// mesg += ok ? "ok." : "failed.";
+//
+// } catch (IOException e) {
+// //e.printStackTrace();
+// throw new Exception(e.getMessage());
+// }
+//
+// app.showMessage("Write script", mesg);
return file;
}
+ // returns comma separated list of chosen crop numbers to run
+ private String getChosenCropNums() throws Exception{
+ String[] seCrops = cropSelectionPanel.getSelectedCrops();
+ if ( seCrops == null || seCrops.length == 0)
+ throw new Exception( "Please select crop(s) first!");
+ String crop = null;
+ String cropIDs = "";
+ for (int i=0; i= the minimum crop acres " + ls );
- sb.append("# " + ls + ls );
-
- sb.append("setenv MINIMUM_CROP_ACRES " + minAcreas.getText() + ls +ls);
-
- sb.append("# Define BELD4 input file" + ls );
+
+ sb.append("# Set minimum crop acres for site selection " + ls);
+ sb.append("# Grids selected for EPIC modeling will have at " + ls);
+ sb.append("# least one crop with acreage >= the minimum crop acres " + ls);
+ sb.append("# " + ls + ls);
+
+ sb.append("setenv MINIMUM_CROP_ACRES " + minAcreas.getText() + ls + ls);
+
+ sb.append("# Define BELD4 input file" + ls);
sb.append("setenv DOMAIN_BELD4_NETCDF " + beld4Dir.getText() + ls + ls);
-
- sb.append("# Define US county shapefiles with " + ls );
+
+ sb.append("# Define US county shapefiles with " + ls);
sb.append("setenv COUNTY_SHAPEFILE $COMM_DIR/gisFiles/co99_d00_conus_cmaq_epic.shp" + ls + ls);
-
- sb.append("# Define North American State political boundary shapefile" + ls );
+
+ sb.append("# Define North American State political boundary shapefile" + ls);
sb.append("setenv COUNTRY_SHAPEFILE $COMM_DIR/gisFiles/na_bnd_camq_epic.shp" + ls + ls);
-
- sb.append("# US 8-digit HUC shapefile" + ls );
+
+ sb.append("# US 8-digit HUC shapefile" + ls);
sb.append("setenv HUC8_SHAPEFILE $COMM_DIR/gisFiles/conus_hucs_8_cmaq.shp" + ls + ls);
-
+
sb.append("# Define Elevation image" + ls);
sb.append("setenv ELEVATION_IMAGE $COMM_DIR/gisFiles/na_dem_epic.img" + ls + ls);
-
+
sb.append("# Define slope image" + ls);
sb.append("setenv SLOPE_IMAGE $COMM_DIR/gisFiles/na_slope_epic.img" + ls + ls);
-
+
sb.append("#" + ls);
sb.append("# Output files" + ls);
- sb.append("setenv OUTPUT_TEXT_FILE $SCEN_DIR/share_data/EPICSites_Info.csv" + ls );
+ sb.append("setenv OUTPUT_TEXT_FILE $SCEN_DIR/share_data/EPICSites_Info.csv" + ls);
sb.append("setenv OUTPUT_TEXT_FILE2 $SCEN_DIR/share_data/EPICSites_Crop.csv" + ls);
sb.append("setenv OUTPUT_TEXT_FILE3 $SCEN_DIR/share_data/allSites_Info.csv" + ls + ls);
-
+
sb.append("# Run the tool" + ls);
sb.append("$SA_HOME/bin/64bits/compute_EPICSiteData.exe" + ls + ls);
-
+
sb.append(" if ( $status == 0 ) then " + ls);
sb.append(" echo ==== Finished crop site info generation. " + ls);
sb.append(" else " + ls);
sb.append(" echo ==== Error in crop site info generation." + ls + ls);
- sb.append(" echo " + ls );
+ sb.append(" echo " + ls);
sb.append(" endif " + ls);
sb.append("#===================================================================" + ls);
- outMessages += "OUTPUT_TEXT_FILE $SCEN_DIR/share_data/EPICSite_Info.csv" +ls;
- outMessages += "OUTPUT_TEXT_FILE2 $SCEN_DIR/share_data/EPICSite_Crop.csv" +ls;
- outMessages += "OUTPUT_TEXT_FILE3 $SCEN_DIR/share_data/allSite_Info.csv" +ls;
+ outMessages += "OUTPUT_TEXT_FILE $SCEN_DIR/share_data/EPICSite_Info.csv" + ls;
+ outMessages += "OUTPUT_TEXT_FILE2 $SCEN_DIR/share_data/EPICSite_Crop.csv" + ls;
+ outMessages += "OUTPUT_TEXT_FILE3 $SCEN_DIR/share_data/allSite_Info.csv" + ls;
String mesg = "";
try {
File script = new File(file);
Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- mesg += "Created a script file: " + file + ls;
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception(e.getMessage());
- }
- app.showMessage("Write script", mesg);
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ mesg += "Created a script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
+ app.showMessage("Write script", mesg);
return file;
}
-
+
private String getScriptHeader() {
StringBuilder sb = new StringBuilder();
String ls = "\n";
sb.append("#!/bin/csh -f" + ls);
sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to generate EPIC site table for EPIC modeling from:" + ls);
- sb.append("# 1. Grid description " + ls);
- sb.append("# 2. BELD4 NetCDF file - contains CROPF variable - 40 classes " + ls);
- sb.append("# 3. US county shapefile with attributes: STATE(string), COUNTY(string), " + ls);
+ sb.append("# Purpose: to generate EPIC site table for EPIC modeling from:" + ls);
+ sb.append("# 1. Grid description " + ls);
+ sb.append("# 2. BELD4 NetCDF file - contains CROPF variable - 40 classes " + ls);
+ sb.append("# 3. US county shapefile with attributes: STATE(string), COUNTY(string), " + ls);
sb.append("# FIPS(string), COUNTRY(string), STATEABB(string), REGION10(short)" + ls);
sb.append("# 4. North American political state shapefile with attributes: " + ls);
- sb.append("# COUNTRY(string), STATEABB(string) " + ls);
- sb.append("# 5. US 8-digit HUC boundary shapefile with attribute: HUC_8(string)" + ls);
- sb.append("# 6. DEM elevation data: meters and missing value=-9999" + ls);
- sb.append("# 7. DEM slope data: 0 to 90 degree with scalar 0.01 and missing value -9999" + ls);
+ sb.append("# COUNTRY(string), STATEABB(string) " + ls);
+ sb.append("# 5. US 8-digit HUC boundary shapefile with attribute: HUC_8(string)" + ls);
+ sb.append("# 6. DEM elevation data: meters and missing value=-9999" + ls);
+ sb.append("# 7. DEM slope data: 0 to 90 degree with scalar 0.01 and missing value -9999" + ls);
sb.append("#" + ls);
sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
sb.append("# in support of the EPA CMAS project, 2012-2013." + ls);
@@ -319,17 +400,17 @@ private String getScriptHeader() {
sb.append("# Written by: L. R., NOV. 2012" + ls);
sb.append("#" + ls);
sb.append("# Call program: compute_EPICSiteData.exe" + ls);
- sb.append("# Needed environment variables included in the script file to run." + ls);
- sb.append("#" + ls);
+ sb.append("# Needed environment variables included in the script file to run." + ls);
+ sb.append("#" + ls);
sb.append("#***************************************************************************************" + ls + ls);
-
+
return sb.toString();
}
-
+
private void runScript(final String file) {
String log = file + ".log";
-
+
outMessages += "Script file: " + file + ls;
outMessages += "Log file: " + log + ls;
runMessages.setText(outMessages);
@@ -337,6 +418,27 @@ private void runScript(final String file) {
FileRunner.runScript(file, log, msg);
}
+ private void runBatchScript(final String batchFile, final String jobFile) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qSiteInfo = Constants.getProperty(Constants.QUEUE_SITE_INFO, msg);
+
+ File script = new File(batchFile.replaceAll("\\\\", "\\\\\\\\"));
+
+// sb.append(qcmd + " " + qSiteInfo + " -o " + log + " " + script.getAbsolutePath());
+ sb.append(script.getAbsolutePath() + " >& " + log);
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
@Override
public void newProjectCreated() {
domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
@@ -351,18 +453,18 @@ public void newProjectCreated() {
scenarioDir.setText(domain.getScenarioDir());
String scenDir = domain.getScenarioDir().trim();
- String gName = domain.getGridName().trim();
+ String gName = domain.getGridName().trim();
String nlcdY = domain.getNlcdYear().trim();
- String beld4file = scenDir + "/share_data/beld4_" + gName + "_" + nlcdY +".nc";
- //File f = new File(beld4file);
- //if(f.exists()){
- this.beld4Dir.setText(beld4file);
-// }
-// else
-// this.beld4Dir.setText(scenDir);
+ String beld4file = scenDir + "/share_data/beld4_" + gName + "_" + nlcdY + ".nc";
+ // File f = new File(beld4file);
+ // if(f.exists()){
+ this.beld4Dir.setText(beld4file);
+ // }
+ // else
+ // this.beld4Dir.setText(scenDir);
runMessages.setText("");
- minAcreas.setText("40.0");
- if ( fields == null ) {
+ minAcreas.setText("0.0");
+ if (fields == null) {
fields = new SiteInfoGenFields();
app.getProject().addPage(fields);
}
@@ -372,19 +474,19 @@ public void newProjectCreated() {
public void projectLoaded() {
domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
fields = (SiteInfoGenFields) app.getProject().getPage(fields.getName());
-
- if( fields != null ) {
+
+ if (fields != null) {
String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length()>0 )
+ if (scenloc != null && scenloc.trim().length() > 0)
this.scenarioDir.setText(scenloc);
- else
+ else
this.scenarioDir.setText(fields.getScenarioDir());
String scenDir = domain.getScenarioDir().trim();
- String gridNames = domain.getGridName().trim();
- String year = domain.getNlcdYear()==null?"":domain.getNlcdYear().trim();
+ String gridNames = domain.getGridName().trim();
+ String year = domain.getNlcdYear() == null ? "" : domain.getNlcdYear().trim();
String beld4file = fields.getBeld4ncf();
- if ( beld4file == null || beld4file.trim().isEmpty() )
- beld4file = scenDir + "/share_data/beld4_" + gridName + "_" + year +".nc";
+ if (beld4file == null || beld4file.trim().isEmpty())
+ beld4file = scenDir + "/share_data/beld4_" + gridName + "_" + year + ".nc";
this.beld4Dir.setText(beld4file);
this.runMessages.setText(fields.getMessage());
rows.setValue(domain.getRows());
@@ -394,34 +496,45 @@ public void projectLoaded() {
xSize.setValue(domain.getXcellSize());
ySize.setValue(domain.getYcellSize());
proj4proj.setText(domain.getProj());
- gridName.setText(gridNames);
- minAcreas.setText(fields.getMinAcres()==null? "40.0":fields.getMinAcres());
+ gridName.setText(gridNames);
+ minAcreas.setText(fields.getMinAcres() == null ? "0.0" : fields.getMinAcres());
domain.setCMinAcres(domain.getCMinAcres());
- }else {
+ } else {
newProjectCreated();
- }
- //setFalseEditable();
+ }
+ // setFalseEditable();
}
@Override
public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( rows != null ) fields.setRows(Integer.parseInt(rows.getText() == null? "0" : rows.getValue()+""));
- if ( beld4Dir != null ) fields.setBeld4ncf(beld4Dir.getText()== null? "" : beld4Dir.getText());
- if ( cols != null ) fields.setCols(Integer.parseInt(cols.getText() == null? "0" : cols.getValue()+""));
- if ( xSize != null ) fields.setXcellSize(Float.parseFloat(xSize.getText() == null? "0" : xSize.getValue()+""));
- if ( ySize != null ) fields.setYcellSize(Float.parseFloat(ySize.getText() == null? "0" : ySize.getValue()+""));
- if ( xmin != null ) fields.setXmin(Float.parseFloat(xmin.getText() == null? "0" : xmin.getValue()+""));
- if ( ymin != null ) fields.setYmin(Float.parseFloat(ymin.getText() == null? "0" : ymin.getValue()+""));
- if ( proj4proj != null ) fields.setProj(proj4proj.getText() == null? "" : proj4proj.getText());
- if ( gridName != null ) fields.setGridName(gridName.getText()== null? "" : gridName.getText());
- if ( runMessages != null ) fields.setMessage(runMessages.getText());
- if ( minAcreas != null) fields.setMinAcres(minAcreas.getText());
+ if (scenarioDir != null)
+ domain.setScenarioDir(scenarioDir.getText());
+ if (scenarioDir != null)
+ fields.setScenarioDir(scenarioDir.getText());
+ if (rows != null)
+ fields.setRows(Integer.parseInt(rows.getText() == null ? "0" : rows.getValue() + ""));
+ if (beld4Dir != null)
+ fields.setBeld4ncf(beld4Dir.getText() == null ? "" : beld4Dir.getText());
+ if (cols != null)
+ fields.setCols(Integer.parseInt(cols.getText() == null ? "0" : cols.getValue() + ""));
+ if (xSize != null)
+ fields.setXcellSize(Float.parseFloat(xSize.getText() == null ? "0" : xSize.getValue() + ""));
+ if (ySize != null)
+ fields.setYcellSize(Float.parseFloat(ySize.getText() == null ? "0" : ySize.getValue() + ""));
+ if (xmin != null)
+ fields.setXmin(Float.parseFloat(xmin.getText() == null ? "0" : xmin.getValue() + ""));
+ if (ymin != null)
+ fields.setYmin(Float.parseFloat(ymin.getText() == null ? "0" : ymin.getValue() + ""));
+ if (proj4proj != null)
+ fields.setProj(proj4proj.getText() == null ? "" : proj4proj.getText());
+ if (gridName != null)
+ fields.setGridName(gridName.getText() == null ? "" : gridName.getText());
+ if (runMessages != null)
+ fields.setMessage(runMessages.getText());
+ if (minAcreas != null)
+ fields.setMinAcres(minAcreas.getText());
fields.setBeld4ncf(beld4Dir.getText().trim());
domain.setCMinAcres(minAcreas.getText());
}
-
-}
-
+}
diff --git a/festc_core/src/gov/epa/festc/gui/CreateSpinupManFilesPanel.java b/festc_core/src/gov/epa/festc/gui/CreateSpinupManFilesPanel.java
index 84d7803..d72e52f 100644
--- a/festc_core/src/gov/epa/festc/gui/CreateSpinupManFilesPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/CreateSpinupManFilesPanel.java
@@ -1,337 +1,585 @@
-package gov.epa.festc.gui;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.core.proj.DomainFields;
-import gov.epa.festc.core.proj.ManageSpinupFields;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.FileRunner;
-import gov.epa.festc.util.ModelYearInconsistantException;
-import gov.epa.festc.util.SpringLayoutGenerator;
-
-import java.awt.Dimension;
-import java.awt.Font;
-import java.awt.event.ActionEvent;
-import java.io.BufferedWriter;
-import java.io.File;
-import java.io.FileWriter;
-import java.io.IOException;
-import java.text.SimpleDateFormat;
-import java.util.Date;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.BorderFactory;
-import javax.swing.BoxLayout;
-import javax.swing.JButton;
-import javax.swing.JCheckBox;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.SpringLayout;
-import javax.swing.SwingConstants;
-
-import simphony.util.messages.MessageCenter;
-
-public class CreateSpinupManFilesPanel extends UtilFieldsPanel implements PlotEventListener {
-
- /**
- *
- */
- private static final long serialVersionUID = 7631048430725473655L;
-
- private FestcApplication app;
- private MessageCenter msg;
-
- private ManageSpinupFields fields;
- //private DomainFields domain;
-
- private CropSelectionPanel cropSelectionPanel;
-
- public CreateSpinupManFilesPanel(FestcApplication application) {
- app = application;
- fields = new ManageSpinupFields();
- app.getProject().addPage(fields);
- app.addPlotListener(this);
- msg = app.getMessageCenter();
- add(createPanel());
- }
-
- private JPanel createPanel() {
- JPanel mainPanel = new JPanel();
- mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
- mainPanel.add(getNorthPanel());
-
- mainPanel.add(scenPanel());
- mainPanel.add(fertYearPanel());
- mainPanel.add(cropsPanel());
- mainPanel.add(messageBox());
- return mainPanel;
- }
-
- private JPanel cropsPanel(){
- JPanel panel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
- JPanel buttonPanel = new JPanel();
- JButton btn = new JButton(generateManSpinupAction());
- btn.setPreferredSize(new Dimension(100,50));
- buttonPanel.add(btn);
- buttonPanel.setBorder(BorderFactory.createEmptyBorder(70, 30, 70, 30));
- this.cropSelectionPanel = new CropSelectionPanel(app);
-
- layout.addWidgetPair(cropSelectionPanel, buttonPanel, panel);
- layout.makeCompactGrid(panel, 1, 2, // number of rows and cols
- 10, 10, // initial X and Y
- 5, 5); // x and y pading
- return panel;
- }
-
- private JPanel getNorthPanel() {
- JPanel panel = new JPanel();
- JLabel title = new JLabel(Constants.MAN_SPINUP, SwingConstants.CENTER);
- title.setFont(new Font("Default", Font.BOLD, 20));
-
- panel.add(title);
- panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 10, 0));
-
- return panel;
- }
-
- private Action generateManSpinupAction() {
- return new AbstractAction("Run") {
-
- public void actionPerformed(ActionEvent e) {
- try {
- generateRunScript();
- } catch (Exception exc) {
- //exc.printStackTrace();
- app.showMessage("Run script", exc.getMessage());
- }
- }
- };
- }
-
- private void generateRunScript() throws Exception {
- String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- if (baseDir == null || baseDir.isEmpty())
- throw new Exception("Base dir is empty, please specify it in the configuration file!");
-
- String scenarioDir = this.scenarioDir.getText();
- if ( scenarioDir == null || scenarioDir.isEmpty())
- throw new Exception("Please select scenario dir first!");
-
- String fYear = (String) this.fertYearSel.getSelectedItem();
- if ( fYear.trim().isEmpty() )
- throw new Exception("Please select fertilizer year!");
-
- String sFYear = domain.getCFertYear();
- if (sFYear == null || sFYear.trim().isEmpty()) {
- domain.setCFertYear(fYear);
- sFYear = fYear;
- }
- else if (sFYear != null && !sFYear.trim().isEmpty()
- && !sFYear.endsWith(fYear) && app.allowDiffCheck())
- throw new Exception("Current land use year " + fYear + " is inconsistent with previous one (" + sFYear + ")");
- //System.out.println("sfYear: " + sFYear + " " + fYear);
- String seCropsString = cropSelectionPanel.selectedItemTostring();
- //System.out.println();
- String[] seCrops = cropSelectionPanel.getSelectedCrops();
- if ( seCrops == null || seCrops.length == 0 )
- throw new Exception("Please select crop(s) first!");
-
- outMessages += ls + "Epic base: " + baseDir + ls;
- outMessages += "Scen directory: " + scenarioDir + ls;
- outMessages += "Fertlizer year: " + fYear + ls;
- final String file = writeRunScript(baseDir, scenarioDir, seCropsString, fYear);
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- runScript(file);
- }
- });
- populateThread.start();
- }
-
- private void runScript(final String file) {
- String log = file + ".log";
-
- outMessages += "Script file: " + file + ls;
- outMessages += "Log file: " + log + ls;
- runMessages.setText(outMessages);
- runMessages.validate();
- FileRunner.runScript(file, log, msg);
- }
-
- private String writeRunScript(
- String baseDir,
- String scenarioDir,
- String cropNames,
- String fYear) throws Exception {
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or java.sql.Timestamp!
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
-
- String file = scenarioDir.trim() + "/scripts";
-
- if ( !file.endsWith(System.getProperty("file.separator")))
- file += System.getProperty("file.separator");
- file += "runEpicManSpinup_" + timeStamp + ".csh";
- String mesg = "";
- try {
- StringBuilder sb = new StringBuilder();
- sb.append(getScriptHeader());
- sb.append(getEnvironmentDef(baseDir, scenarioDir, fYear));
- sb.append(getManSu(cropNames));
-
- sb.append(getRunTD(baseDir));
-
- File script = new File(file);
-
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
-
- mesg += "Script file: " + file + "\n";
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
-
- } catch (IOException e) {
- //e.printStackTrace();
- //msg.error("Error generating EPIC script file", e);
- throw new Exception(e.getMessage());
- }
-
- app.showMessage("Write script", mesg);
-
- return file;
- }
-
- private String getScriptHeader() {
- StringBuilder sb = new StringBuilder();
-
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to run management spinup utility" + ls);
- sb.append("#" + ls);
- sb.append("# Written by: Fortran by Benson, Script by IE. 2012" + ls);
- sb.append("# Modified by:" + ls);
- sb.append("#" + ls);
- sb.append("# Program: ManGenSU.exe" + ls);
- sb.append("# " + ls);
- sb.append("#***************************************************************************************" + ls + ls);
-
- return sb.toString();
- }
-
- private String getEnvironmentDef(String baseDir, String scenarioDir, String fYear) {
- StringBuilder sb = new StringBuilder();
-
- sb.append(ls + "#" + ls);
- sb.append("# Define environment variables" + ls);
- sb.append("#" + ls + ls);
-
- sb.append("setenv EPIC_DIR " + baseDir + ls);
- sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv SOIL_DIR $EPIC_DIR/common_data/BaumerSoils" +ls);
- sb.append("setenv MANG_DIR $EPIC_DIR/common_data/util/manageCreate/" + fYear + ls);
- sb.append("setenv WEAT_DIR $EPIC_DIR/common_data/statWeath" + ls);
-
- sb.append("" + ls);
- sb.append("set EXEC_DIR = " + baseDir + "/util/manageCreate" + ls);
- sb.append("" + ls);
-
- return sb.toString();
- }
-
- private String getManSu(String cropNames){
- StringBuilder sb = new StringBuilder();
-
- sb.append("#" + ls);
- sb.append("# set input variables" + ls);
- sb.append("set CROPS = " + cropNames + ls);
- sb.append("foreach crop ($CROPS) " + ls);
- sb.append(" setenv CROP_NAME $crop " + ls);
- sb.append(" if ( ! -e $SCEN_DIR/$CROP_NAME/spinup/manage/OPC ) " +
- " mkdir -p $SCEN_DIR/$CROP_NAME/spinup/manage/OPC " + ls);
- sb.append("#" + ls);
- String exe;
- exe = "$EXEC_DIR/ManGenSU.exe";
-
- sb.append(ls + "#" + ls);
- sb.append("# Generate management spinup files " + ls);
- sb.append("#" + ls + ls);
- sb.append(" echo ==== Begin EPIC management spinup run of CROP: $CROP_NAME " + ls);
- sb.append(" time " + exe + ls );
- sb.append(" if ( $status == 0 ) then" + ls);
- sb.append(" echo ==== Finished EPIC management spinup run of CROP: $CROP_NAME" + ls);
- sb.append(" else " + ls);
- sb.append(" echo ==== Error in EPIC management spinup run of CROP: $CROP_NAME" + ls);
- sb.append(" endif " + ls);
- sb.append("end " + ls );
- sb.append(ls);
-
- return sb.toString();
- }
-
- private String getRunTD(String baseDir){
- StringBuilder sb = new StringBuilder();
- sb.append(ls + "#" + ls);
-
- sb.append("# Run tile drain " + ls + ls);
- sb.append("setenv WORK_DIR $SCEN_DIR/work_dir" + ls);
- sb.append("setenv COMM_DIR $EPIC_DIR/common_data" + ls);
- sb.append("setenv TYPE_NAME spinup" + ls);
- //sb.append("set EXEC_DIR = " + baseDir + "/util/tileDrain" + ls +ls);
- sb.append("foreach crop ($CROPS) " + ls);
- sb.append(" setenv CROP_NAME $crop " + ls);
- sb.append(" if ( ! -e $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain ) " +
- "mkdir -p $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain" + ls);
- sb.append(" time $EXEC_DIR/soilDrain.exe" + ls);
- sb.append(" if ( $status == 0 ) then" + ls);
- sb.append(" echo ==== Finished soil drain run for crop $CROP_NAME. " + ls);
- sb.append(" else " + ls);
- sb.append(" echo ==status== Error in soil drain run for crop $CROP_NAME. " + ls);
- sb.append(" exit 1 " + ls);
- sb.append(" endif " + ls);
-
- sb.append(" mv $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain/SOILLISTALLSU.DAT " +
- "$SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain/SOILLIST.DAT" + ls);
-
- sb.append("end " + ls );
- sb.append(ls);
- return sb.toString();
- }
-
-
- public void projectLoaded() {
- fields = (ManageSpinupFields) app.getProject().getPage(fields.getName());
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if ( fields != null ){
- String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length()>0 )
- this.scenarioDir.setText(scenloc);
- else
- this.scenarioDir.setText(fields.getScenarioDir());
- fertYearSel.setSelectedItem(fields.getFertYear());
- runMessages.setText(fields.getMessage());
- }else{
- newProjectCreated();
- }
- }
-
- public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( fertYearSel != null) fields.setFertYear((String)fertYearSel.getSelectedItem());
- if ( runMessages != null ) fields.setMessage(runMessages.getText());
- }
-
- @Override
- public void newProjectCreated() {
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
-
- scenarioDir.setText(domain.getScenarioDir());
- runMessages.setText("");
- if ( fields == null ) {
- fields = new ManageSpinupFields();
- app.getProject().addPage(fields);
- }
- }
-}
+package gov.epa.festc.gui;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.proj.DomainFields;
+import gov.epa.festc.core.proj.ManageSpinupFields;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.FileRunner;
+import gov.epa.festc.util.ModelYearInconsistantException;
+import gov.epa.festc.util.SpringLayoutGenerator;
+
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.text.SimpleDateFormat;
+import java.util.Date;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.BoxLayout;
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.SpringLayout;
+import javax.swing.SwingConstants;
+
+import simphony.util.messages.MessageCenter;
+
+public class CreateSpinupManFilesPanel extends UtilFieldsPanel implements PlotEventListener {
+
+ /**
+ *
+ */
+ private static final long serialVersionUID = 7631048430725473655L;
+
+ private FestcApplication app;
+ private MessageCenter msg;
+
+ private ManageSpinupFields fields;
+ // private DomainFields domain;
+
+ private CropSelectionPanel cropSelectionPanel;
+
+ public CreateSpinupManFilesPanel(FestcApplication application) {
+ app = application;
+ fields = new ManageSpinupFields();
+ app.getProject().addPage(fields);
+ app.addPlotListener(this);
+ msg = app.getMessageCenter();
+ add(createPanel());
+ }
+
+ private JPanel createPanel() {
+ JPanel mainPanel = new JPanel();
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
+ mainPanel.add(getNorthPanel());
+
+ mainPanel.add(scenPanel());
+ mainPanel.add(fertYearPanel());
+ mainPanel.add(cropsPanel());
+ mainPanel.add(messageBox());
+ return mainPanel;
+ }
+
+ private JPanel cropsPanel() {
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+ JPanel buttonPanel = new JPanel();
+ JButton btn = new JButton(generateManSpinupAction());
+ btn.setPreferredSize(new Dimension(100, 50));
+ buttonPanel.add(btn);
+ buttonPanel.setBorder(BorderFactory.createEmptyBorder(70, 30, 70, 30));
+ this.cropSelectionPanel = new CropSelectionPanel(app);
+
+ layout.addWidgetPair(cropSelectionPanel, buttonPanel, panel);
+ layout.makeCompactGrid(panel, 1, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+ return panel;
+ }
+
+ private JPanel getNorthPanel() {
+ JPanel panel = new JPanel();
+ JLabel title = new JLabel(Constants.MAN_SPINUP, SwingConstants.CENTER);
+ title.setFont(new Font("Default", Font.BOLD, 20));
+
+ panel.add(title);
+ panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 10, 0));
+
+ return panel;
+ }
+
+ private Action generateManSpinupAction() {
+ return new AbstractAction("Run") {
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+ generateRunScript();
+ } catch (Exception exc) {
+ // exc.printStackTrace();
+ app.showMessage("Run script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private void generateRunScript() throws Exception {
+ String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ if (baseDir == null || baseDir.isEmpty())
+ throw new Exception("Base dir is empty, please specify it in the configuration file!");
+
+ String scenarioDir = this.scenarioDir.getText();
+ if (scenarioDir == null || scenarioDir.isEmpty())
+ throw new Exception("Please select scenario dir first!");
+
+ String fYear = (String) this.fertYearSel.getSelectedItem();
+ if (fYear.trim().isEmpty())
+ throw new Exception("Please select fertilizer year!");
+
+ String sFYear = domain.getCFertYear();
+ if (sFYear == null || sFYear.trim().isEmpty()) {
+ domain.setCFertYear(fYear);
+ sFYear = fYear;
+ } else if (sFYear != null && !sFYear.trim().isEmpty() && !sFYear.endsWith(fYear) && app.allowDiffCheck())
+ throw new Exception(
+ "Current land use year " + fYear + " is inconsistent with previous one (" + sFYear + ")");
+ // System.out.println("sfYear: " + sFYear + " " + fYear);
+ String seCropsString = cropSelectionPanel.selectedItemTostring();
+ // System.out.println();
+ String[] seCrops = cropSelectionPanel.getSelectedCrops();
+ if (seCrops == null || seCrops.length == 0)
+ throw new Exception("Please select crop(s) first!");
+
+ outMessages += ls + "Epic base: " + baseDir + ls;
+ outMessages += "Scen directory: " + scenarioDir + ls;
+ outMessages += "Fertlizer year: " + fYear + ls;
+ final String jobFile = writeRunScript(baseDir, scenarioDir, seCropsString, fYear);
+
+ String cropNums = getChosenCropNums();
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir);
+ } else {
+ batchFile = null;
+ }
+
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile, cropNums);
+ }
+ }
+ });
+ populateThread.start();
+
+ // Thread populateThread = new Thread(new Runnable() {
+ // public void run() {
+ // runScript(file);
+ // }
+ // });
+ // populateThread.start();
+ }
+
+ private void runScript(final String file) {
+ String log = file + ".log";
+
+ outMessages += "Script file: " + file + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+ FileRunner.runScript(file, log, msg);
+ }
+
+ private void runBatchScript(final String batchFile, final String jobFile, final String chosenCrops) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qManSpinup = Constants.getProperty(Constants.QUEUE_MAN_SPINUP, msg);
+ if (qcmd.contains("sbatch")) {
+ // SLURM
+ sb.append("sbatch --job-name=EPICManSpinupArrayJob --output=runEpicManSpinup_JobArray_%A_%a.out --array="
+ + chosenCrops + " " + qManSpinup + " " + batchFile + ls);
+ } else if (qcmd.contains("qsub")) {
+ // PBS
+ sb.append("qsub -N EPICManSpinupArrayJob -t " + chosenCrops + " " + qManSpinup + " " + batchFile + ls);
+ } else if (qcmd.contains("bsub")) {
+ // LSF
+ sb.append("bsub -J EPICManSpinupArrayJob[" + chosenCrops + "] " + qManSpinup + " " + batchFile + ls);
+ }
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
+ private String writeRunScript(String baseDir, String scenarioDir, String cropNames, String fYear) throws Exception {
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+
+ String file = scenarioDir.trim() + "/scripts";
+
+ if (!file.endsWith(System.getProperty("file.separator")))
+ file += System.getProperty("file.separator");
+ file += "runEpicManSpinup_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+
+ // scriptContent contains all run instructions for direct submit, or job
+ // array
+ // submit instructions if using a workload manager
+ String scriptContent = null;
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ // no batch system - generate script using legacy code
+ sb.append(getScriptHeader());
+ sb.append(getEnvironmentDef(baseDir, scenarioDir, fYear));
+ sb.append(getManSu(cropNames));
+ sb.append(getRunTD(baseDir));
+ scriptContent = sb.toString();
+ } else {
+ // assume batch system that supports job arrays (SLURM, PBS, LSF,
+ // etc.)
+ // create job array script
+ scriptContent = createArrayTaskScript(baseDir, scenarioDir, fYear);
+ }
+
+ writeScriptFile(file, scriptContent);
+ // String mesg = "";
+ // try {
+ // StringBuilder sb = new StringBuilder();
+ // sb.append(getScriptHeader());
+ // sb.append(getEnvironmentDef(baseDir, scenarioDir, fYear));
+ // sb.append(getManSu(cropNames));
+ //
+ // sb.append(getRunTD(baseDir));
+ //
+ // File script = new File(file);
+ //
+ // BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ // out.write(sb.toString());
+ // out.close();
+ //
+ // mesg += "Script file: " + file + "\n";
+ // boolean ok = script.setExecutable(true, false);
+ // mesg += "Set the script file to be executable: ";
+ // mesg += ok ? "ok." : "failed.";
+ //
+ // } catch (IOException e) {
+ // //e.printStackTrace();
+ // //msg.error("Error generating EPIC script file", e);
+ // throw new Exception(e.getMessage());
+ // }
+ //
+ // app.showMessage("Write script", mesg);
+
+ return file;
+ }
+
+ // This is legacy code that has been moved to it's own method
+ protected void writeScriptFile(String file, String content) {
+
+ String mesg = "";
+
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(content);
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ // printStackTrace();
+ // g.error("Error generating EPIC script file", e);
+ app.showMessage("Write script", e.getMessage());
+ }
+
+ app.showMessage("Write script", mesg);
+ }
+
+ protected String writeBatchFile(String jobFile, String scenarioDir) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitEpicManSpinup" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
+
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+ // returns comma separated list of chosen crop numbers to run
+ private String getChosenCropNums() throws Exception {
+ String[] seCrops = cropSelectionPanel.getSelectedCrops();
+ if (seCrops == null || seCrops.length == 0)
+ throw new Exception("Please select crop(s) first!");
+ String crop = null;
+ String cropIDs = "";
+ for (int i = 0; i < seCrops.length; i++) {
+ crop = seCrops[i];
+ Integer cropID = Constants.CROPS.get(crop);
+ if (cropID == null || cropID <= 0)
+ throw new Exception("crop id is null for crop " + crop);
+ // Integer cropIrID = cropID +1;
+ if (i != 0) {
+ cropIDs += "," + cropID;
+ } else {
+ cropIDs = "" + cropID;
+ }
+ // cropIDs += "," + cropIrID;
+ }
+
+ return cropIDs;
+ }
+
+ private String createArrayTaskScript(String baseDir, String scenarioDir, String fYear) {
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ String arrayIdEnvVar = "";
+
+ if (qcmd.contains("sbatch")) {
+ // SLURM
+ arrayIdEnvVar = "$SLURM_ARRAY_TASK_ID";
+ } else if (qcmd.contains("qsub")) {
+ // PBS
+ arrayIdEnvVar = "$PBS_ARRAYID";
+ } else if (qcmd.contains("bsub")) {
+ // LSF
+ arrayIdEnvVar = "$LSB_JOBINDEX";
+ }
+
+ StringBuilder sb = new StringBuilder();
+
+ // header
+ sb.append("#!/bin/csh -f" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to run management spinup utility job array task" + ls);
+ sb.append("# SLURM example cmd:" + ls);
+ sb.append(
+ "# sbatch --job-name=EPICManSpinupArrayJob --output=submitEPICManSpinup_JobArray_%A_%a.out --array=1,31 --time=2:00:00"
+ + ls);
+ sb.append("# /PATH_TO_SCRIPT/runEpicManSpinup_TIMESTAMP.csh" + ls);
+ sb.append("# where 1,31 are rainfed (odd) crop numbers only" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by: Fortran by Benson, Original Script by IE. 2012" + ls);
+ sb.append("# Modified by: EMVL " + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: ManGenSU.exe" + ls);
+ sb.append("# " + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ sb.append(getEnvironmentDef(baseDir, scenarioDir, fYear));
+
+ sb.append("set CROPS = (HAY ALFALFA OTHGRASS BARLEY EBEANS CORNG CORNS COTTON OATS PEANUTS POTATOES RICE RYE)"
+ + ls);
+ sb.append("set CROPS = ($CROPS SORGHUMG SORGHUMS SOYBEANS SWHEAT WWHEAT OTHER CANOLA BEANS)" + ls + ls);
+
+ sb.append("# Set output dir" + ls);
+
+ // sb.append("setenv CROP_NUM $SLURM_ARRAY_TASK_ID" + ls);
+ sb.append("setenv CROP_NUM " + arrayIdEnvVar + ls);
+ sb.append("@ rem = $CROP_NUM % 2" + ls);
+ sb.append("@ ind = ($CROP_NUM + $rem) / 2" + ls);
+ sb.append("setenv CROP_NAME $CROPS[$ind]" + ls);
+ sb.append("if ( ! -e $SCEN_DIR/$CROP_NAME/spinup/manage/OPC ) mkdir -p $SCEN_DIR/$CROP_NAME/spinup/manage/OPC"
+ + ls);
+
+ sb.append("#" + ls);
+ sb.append("## Generate management spinup files" + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("echo ==== Begin EPIC management spinup run of CROP: $CROP_NAME" + ls);
+ sb.append("time $EXEC_DIR/ManGenSU.exe" + ls);
+ sb.append("if ( $status == 0 ) then" + ls);
+ sb.append(" echo ==== Finished EPIC management spinup run of CROP: $CROP_NAME" + ls);
+ sb.append("else" + ls);
+ sb.append(" echo ==== Error in EPIC management spinup run of CROP: $CROP_NAME" + ls);
+ sb.append("endif" + ls);
+
+ sb.append("#" + ls);
+ sb.append("## Run tile drain" + ls);
+
+ sb.append("setenv WORK_DIR $SCEN_DIR/work_dir" + ls);
+ sb.append("setenv COMM_DIR $EPIC_DIR/common_data" + ls);
+ sb.append("setenv TYPE_NAME spinup" + ls);
+ sb.append(
+ "if ( ! -e $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain ) mkdir -p $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain"
+ + ls);
+ sb.append("time $EXEC_DIR/soilDrain.exe" + ls);
+ sb.append(" if ( $status == 0 ) then" + ls);
+ sb.append(" echo ==== Finished soil drain run for crop $CROP_NAME." + ls);
+ sb.append(" else" + ls);
+ sb.append(" echo ==status== Error in soil drain run for crop $CROP_NAME." + ls);
+ sb.append(" exit 1" + ls);
+ sb.append(" endif" + ls);
+ sb.append(
+ "mv $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain/SOILLISTALLSU.DAT $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain/SOILLIST.DAT"
+ + ls);
+
+ return sb.toString();
+
+ }
+
+ private String getScriptHeader() {
+ StringBuilder sb = new StringBuilder();
+
+ sb.append("#!/bin/csh -f" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to run management spinup utility" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by: Fortran by Benson, Script by IE. 2012" + ls);
+ sb.append("# Modified by:" + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: ManGenSU.exe" + ls);
+ sb.append("# " + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ return sb.toString();
+ }
+
+ private String getEnvironmentDef(String baseDir, String scenarioDir, String fYear) {
+ StringBuilder sb = new StringBuilder();
+
+ sb.append(ls + "#" + ls);
+ sb.append("# Define environment variables" + ls);
+ sb.append("#" + ls + ls);
+
+ sb.append("setenv EPIC_DIR " + baseDir + ls);
+ sb.append("setenv SCEN_DIR " + scenarioDir + ls);
+ sb.append("setenv SOIL_DIR $EPIC_DIR/common_data/BaumerSoils" + ls);
+ sb.append("setenv MANG_DIR $EPIC_DIR/common_data/util/manageCreate/" + fYear + ls);
+ sb.append("setenv WEAT_DIR $EPIC_DIR/common_data/statWeath" + ls);
+
+ sb.append("" + ls);
+ sb.append("set EXEC_DIR = " + baseDir + "/util/manageCreate" + ls);
+ sb.append("" + ls);
+
+ return sb.toString();
+ }
+
+ private String getManSu(String cropNames) {
+ StringBuilder sb = new StringBuilder();
+
+ sb.append("#" + ls);
+ sb.append("# set input variables" + ls);
+ sb.append("set CROPS = " + cropNames + ls);
+ sb.append("foreach crop ($CROPS) " + ls);
+ sb.append(" setenv CROP_NAME $crop " + ls);
+ sb.append(" if ( ! -e $SCEN_DIR/$CROP_NAME/spinup/manage/OPC ) "
+ + " mkdir -p $SCEN_DIR/$CROP_NAME/spinup/manage/OPC " + ls);
+ sb.append("#" + ls);
+ String exe;
+ exe = "$EXEC_DIR/ManGenSU.exe";
+
+ sb.append(ls + "#" + ls);
+ sb.append("# Generate management spinup files " + ls);
+ sb.append("#" + ls + ls);
+ sb.append(" echo ==== Begin EPIC management spinup run of CROP: $CROP_NAME " + ls);
+ sb.append(" time " + exe + ls);
+ sb.append(" if ( $status == 0 ) then" + ls);
+ sb.append(" echo ==== Finished EPIC management spinup run of CROP: $CROP_NAME" + ls);
+ sb.append(" else " + ls);
+ sb.append(" echo ==== Error in EPIC management spinup run of CROP: $CROP_NAME" + ls);
+ sb.append(" endif " + ls);
+ sb.append("end " + ls);
+ sb.append(ls);
+
+ return sb.toString();
+ }
+
+ private String getRunTD(String baseDir) {
+ StringBuilder sb = new StringBuilder();
+ sb.append(ls + "#" + ls);
+
+ sb.append("# Run tile drain " + ls + ls);
+ sb.append("setenv WORK_DIR $SCEN_DIR/work_dir" + ls);
+ sb.append("setenv COMM_DIR $EPIC_DIR/common_data" + ls);
+ sb.append("setenv TYPE_NAME spinup" + ls);
+ // sb.append("set EXEC_DIR = " + baseDir + "/util/tileDrain" + ls +ls);
+ sb.append("foreach crop ($CROPS) " + ls);
+ sb.append(" setenv CROP_NAME $crop " + ls);
+ sb.append(" if ( ! -e $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain ) "
+ + "mkdir -p $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain" + ls);
+ sb.append(" time $EXEC_DIR/soilDrain.exe" + ls);
+ sb.append(" if ( $status == 0 ) then" + ls);
+ sb.append(" echo ==== Finished soil drain run for crop $CROP_NAME. " + ls);
+ sb.append(" else " + ls);
+ sb.append(" echo ==status== Error in soil drain run for crop $CROP_NAME. " + ls);
+ sb.append(" exit 1 " + ls);
+ sb.append(" endif " + ls);
+
+ sb.append(" mv $SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain/SOILLISTALLSU.DAT "
+ + "$SCEN_DIR/$CROP_NAME/spinup/manage/tileDrain/SOILLIST.DAT" + ls);
+
+ sb.append("end " + ls);
+ sb.append(ls);
+ return sb.toString();
+ }
+
+ public void projectLoaded() {
+ fields = (ManageSpinupFields) app.getProject().getPage(fields.getName());
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ if (fields != null) {
+ String scenloc = domain.getScenarioDir();
+ if (scenloc != null && scenloc.trim().length() > 0)
+ this.scenarioDir.setText(scenloc);
+ else
+ this.scenarioDir.setText(fields.getScenarioDir());
+ fertYearSel.setSelectedItem(fields.getFertYear());
+ runMessages.setText(fields.getMessage());
+ } else {
+ newProjectCreated();
+ }
+ }
+
+ public void saveProjectRequested() {
+ if (scenarioDir != null)
+ domain.setScenarioDir(scenarioDir.getText());
+ if (scenarioDir != null)
+ fields.setScenarioDir(scenarioDir.getText());
+ if (fertYearSel != null)
+ fields.setFertYear((String) fertYearSel.getSelectedItem());
+ if (runMessages != null)
+ fields.setMessage(runMessages.getText());
+ }
+
+ @Override
+ public void newProjectCreated() {
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+
+ scenarioDir.setText(domain.getScenarioDir());
+ runMessages.setText("");
+ if (fields == null) {
+ fields = new ManageSpinupFields();
+ app.getProject().addPage(fields);
+ }
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/gui/CropSelectionPanel.java b/festc_core/src/gov/epa/festc/gui/CropSelectionPanel.java
index 533c72b..453056e 100644
--- a/festc_core/src/gov/epa/festc/gui/CropSelectionPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/CropSelectionPanel.java
@@ -1,159 +1,159 @@
-package gov.epa.festc.gui;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.util.Constants;
-
-import java.awt.BorderLayout;
-import java.awt.Dimension;
-import java.awt.event.ActionEvent;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.Box;
-import javax.swing.BoxLayout;
-import javax.swing.JButton;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-
-public class CropSelectionPanel extends JPanel {
-
- private ListWidget lstCrops;
- private ListWidget selectedCrops;
- private FestcApplication app;
-
- private JButton selectCropsButton;
- private JButton unselectCropsButton;
-
- public CropSelectionPanel(FestcApplication application) {
- app = application;
- add(createPanel());
- }
-
- private JPanel createPanel() {
- JPanel main = new JPanel();
- main.setLayout(new BoxLayout(main, BoxLayout.X_AXIS));
- main.add(Box.createRigidArea(new Dimension(8,0)));
- main.add(getWestPanel());
- main.add(Box.createRigidArea(new Dimension(8,0)));
- main.add(getButtonPanel());
- main.add(Box.createRigidArea(new Dimension(8,0)));
- main.add(getEastPanel());
- main.add(Box.createRigidArea(new Dimension(8,0)));
- main.repaint();
- return main;
- }
-
- private JPanel getWestPanel() {
-// JPanel leftPanel = new JPanel();
- JPanel cropsPanel = new JPanel(new BorderLayout());
- cropsPanel.add(new JLabel("Crops/Grasses"), BorderLayout.NORTH);
- lstCrops = new ListWidget(Constants.CROPS.keySet().toArray());
- //lstCrops.setVisibleRowCount(12);
-
- cropsPanel.add(Box.createRigidArea(new Dimension(0,10)), BorderLayout.CENTER);
- JScrollPane scrollCropList = new JScrollPane(lstCrops, JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED, JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
- scrollCropList.setPreferredSize(new Dimension(120, 200));
-
- cropsPanel.add(scrollCropList, BorderLayout.SOUTH);
-// leftPanel.add(cropsPanel);
-// leftPanel.add(getButtonPanel());
- return cropsPanel;
- }
-
- private JPanel getButtonPanel(){
- JPanel buttonPanel = new JPanel();
- buttonPanel.setLayout(new BoxLayout(buttonPanel, BoxLayout.Y_AXIS));
-
- JPanel includeButtonPanel = new JPanel();
- includeButtonPanel.setLayout(new BorderLayout(0, 0));
-// includeButtonPanel.setPreferredSize(new Dimension(50, 45));
-// includeButtonPanel.setMinimumSize(new Dimension(50, 45));
- JPanel excludeButtonPanel = new JPanel();
- excludeButtonPanel.setLayout(new BorderLayout(0, 0));
-// excludeButtonPanel.setPreferredSize(new Dimension(50, 45));
-// excludeButtonPanel.setMinimumSize(new Dimension(50, 45));
-
- selectCropsButton = new JButton(setCropsData());
- excludeButtonPanel.add(selectCropsButton, BorderLayout.SOUTH);
-
- unselectCropsButton = new JButton(unSetCropsData());
- includeButtonPanel.add(unselectCropsButton, BorderLayout.NORTH);
- buttonPanel.add(excludeButtonPanel);
- buttonPanel.add(Box.createRigidArea(new Dimension(0,10)));
- buttonPanel.add(includeButtonPanel);
-
- return buttonPanel;
- }
-
- private JPanel getEastPanel(){
- JPanel seCropsPanel = new JPanel(new BorderLayout());
- seCropsPanel.add(new JLabel("Selected Crops"), BorderLayout.NORTH);
- selectedCrops = new ListWidget(new String[]{});
- //selectedCrops.setVisibleRowCount(12);
- seCropsPanel.add(Box.createRigidArea(new Dimension(0,10)), BorderLayout.CENTER);
- JScrollPane seScrollCropList = new JScrollPane(selectedCrops,
- JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
- seScrollCropList.setPreferredSize(new Dimension(120, 200));
- seCropsPanel.add(seScrollCropList, BorderLayout.SOUTH);
- return seCropsPanel;
-
- }
-
- public String selectedItemTostring(){
- int size = selectedCrops.getAllElements().length;
- String[] seCrops = selectedCrops.getAllElements();
- String crops = "\"";
- for ( int i =0; i") {
- public void actionPerformed(ActionEvent e) {
-
- int[] indices = lstCrops.getSelectedIndices();
- Object[] cropNames = lstCrops.getSelectedValues();
- if ( cropNames == null || cropNames.length==0) {
- // TODO report error
- app.showMessage("Select crop(s)", "Please select some crops first!");
- return;
- }
- else {
- for ( int i= 0; i < indices.length; i++)
- selectedCrops.addElement(cropNames[i]);
- lstCrops.removeElements(cropNames);
- }
- }
- };
- }
-
- private Action unSetCropsData() {
- return new AbstractAction("<= Unselect") {
-
- public void actionPerformed(ActionEvent e) {
- Object[] cropNames = selectedCrops.getSelectedValues();
- if ( cropNames == null || cropNames.length==0) {
-
- app.showMessage("Select crop(s)", "Please select some crops first!");
- return;
- }
- else {
- selectedCrops.removeElements(cropNames);
- String[] allSelected = selectedCrops.getAllElements();
- lstCrops.setElements(Constants.CROPS.keySet().toArray());
- lstCrops.removeElements(allSelected);
- lstCrops.revalidate();
- }
- }
- };
- }
-
-}
+package gov.epa.festc.gui;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.util.Constants;
+
+import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.event.ActionEvent;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.Box;
+import javax.swing.BoxLayout;
+import javax.swing.JButton;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+
+public class CropSelectionPanel extends JPanel {
+
+ private ListWidget lstCrops;
+ private ListWidget selectedCrops;
+ private FestcApplication app;
+
+ private JButton selectCropsButton;
+ private JButton unselectCropsButton;
+
+ public CropSelectionPanel(FestcApplication application) {
+ app = application;
+ add(createPanel());
+ }
+
+ private JPanel createPanel() {
+ JPanel main = new JPanel();
+ main.setLayout(new BoxLayout(main, BoxLayout.X_AXIS));
+ main.add(Box.createRigidArea(new Dimension(8,0)));
+ main.add(getWestPanel());
+ main.add(Box.createRigidArea(new Dimension(8,0)));
+ main.add(getButtonPanel());
+ main.add(Box.createRigidArea(new Dimension(8,0)));
+ main.add(getEastPanel());
+ main.add(Box.createRigidArea(new Dimension(8,0)));
+ main.repaint();
+ return main;
+ }
+
+ private JPanel getWestPanel() {
+// JPanel leftPanel = new JPanel();
+ JPanel cropsPanel = new JPanel(new BorderLayout());
+ cropsPanel.add(new JLabel("Crops/Grasses"), BorderLayout.NORTH);
+ lstCrops = new ListWidget(Constants.CROPS.keySet().toArray());
+ //lstCrops.setVisibleRowCount(12);
+
+ cropsPanel.add(Box.createRigidArea(new Dimension(0,10)), BorderLayout.CENTER);
+ JScrollPane scrollCropList = new JScrollPane(lstCrops, JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED, JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
+ scrollCropList.setPreferredSize(new Dimension(120, 200));
+
+ cropsPanel.add(scrollCropList, BorderLayout.SOUTH);
+// leftPanel.add(cropsPanel);
+// leftPanel.add(getButtonPanel());
+ return cropsPanel;
+ }
+
+ private JPanel getButtonPanel(){
+ JPanel buttonPanel = new JPanel();
+ buttonPanel.setLayout(new BoxLayout(buttonPanel, BoxLayout.Y_AXIS));
+
+ JPanel includeButtonPanel = new JPanel();
+ includeButtonPanel.setLayout(new BorderLayout(0, 0));
+// includeButtonPanel.setPreferredSize(new Dimension(50, 45));
+// includeButtonPanel.setMinimumSize(new Dimension(50, 45));
+ JPanel excludeButtonPanel = new JPanel();
+ excludeButtonPanel.setLayout(new BorderLayout(0, 0));
+// excludeButtonPanel.setPreferredSize(new Dimension(50, 45));
+// excludeButtonPanel.setMinimumSize(new Dimension(50, 45));
+
+ selectCropsButton = new JButton(setCropsData());
+ excludeButtonPanel.add(selectCropsButton, BorderLayout.SOUTH);
+
+ unselectCropsButton = new JButton(unSetCropsData());
+ includeButtonPanel.add(unselectCropsButton, BorderLayout.NORTH);
+ buttonPanel.add(excludeButtonPanel);
+ buttonPanel.add(Box.createRigidArea(new Dimension(0,10)));
+ buttonPanel.add(includeButtonPanel);
+
+ return buttonPanel;
+ }
+
+ private JPanel getEastPanel(){
+ JPanel seCropsPanel = new JPanel(new BorderLayout());
+ seCropsPanel.add(new JLabel("Selected Crops"), BorderLayout.NORTH);
+ selectedCrops = new ListWidget(new String[]{});
+ //selectedCrops.setVisibleRowCount(12);
+ seCropsPanel.add(Box.createRigidArea(new Dimension(0,10)), BorderLayout.CENTER);
+ JScrollPane seScrollCropList = new JScrollPane(selectedCrops,
+ JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
+ seScrollCropList.setPreferredSize(new Dimension(120, 200));
+ seCropsPanel.add(seScrollCropList, BorderLayout.SOUTH);
+ return seCropsPanel;
+
+ }
+
+ public String selectedItemTostring(){
+ int size = selectedCrops.getAllElements().length;
+ String[] seCrops = selectedCrops.getAllElements();
+ String crops = "\"";
+ for ( int i =0; i") {
+ public void actionPerformed(ActionEvent e) {
+
+ int[] indices = lstCrops.getSelectedIndices();
+ Object[] cropNames = lstCrops.getSelectedValues();
+ if ( cropNames == null || cropNames.length==0) {
+ // TODO report error
+ app.showMessage("Select crop(s)", "Please select some crops first!");
+ return;
+ }
+ else {
+ for ( int i= 0; i < indices.length; i++)
+ selectedCrops.addElement(cropNames[i]);
+ lstCrops.removeElements(cropNames);
+ }
+ }
+ };
+ }
+
+ private Action unSetCropsData() {
+ return new AbstractAction("<= Unselect") {
+
+ public void actionPerformed(ActionEvent e) {
+ Object[] cropNames = selectedCrops.getSelectedValues();
+ if ( cropNames == null || cropNames.length==0) {
+
+ app.showMessage("Select crop(s)", "Please select some crops first!");
+ return;
+ }
+ else {
+ selectedCrops.removeElements(cropNames);
+ String[] allSelected = selectedCrops.getAllElements();
+ lstCrops.setElements(Constants.CROPS.keySet().toArray());
+ lstCrops.removeElements(allSelected);
+ lstCrops.revalidate();
+ }
+ }
+ };
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/Epic2CMAQPanel.java b/festc_core/src/gov/epa/festc/gui/Epic2CMAQPanel.java
index 2a40cbe..6a8c468 100644
--- a/festc_core/src/gov/epa/festc/gui/Epic2CMAQPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/Epic2CMAQPanel.java
@@ -1,447 +1,555 @@
-package gov.epa.festc.gui;
-
-import java.awt.Font;
-import java.awt.event.ActionEvent;
-import java.io.BufferedWriter;
-import java.io.File;
-import java.io.FileWriter;
-import java.io.IOException;
-import java.text.NumberFormat;
-import java.text.ParseException;
-import java.text.SimpleDateFormat;
-import java.util.Date;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.BorderFactory;
-import javax.swing.BoxLayout;
-import javax.swing.ButtonGroup;
-import javax.swing.JButton;
-import javax.swing.JFormattedTextField;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JRadioButton;
-import javax.swing.JTextField;
-import javax.swing.SpringLayout;
-import javax.swing.SwingConstants;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.core.proj.DomainFields;
-import gov.epa.festc.core.proj.Epic2CMAQFields;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.FileRunner;
-import gov.epa.festc.util.SpringLayoutGenerator;
-import simphony.util.messages.MessageCenter;
-
-public class Epic2CMAQPanel extends UtilFieldsPanel implements PlotEventListener {
- private static final long serialVersionUID = 4247819754945274135L;
- //
- // private JTextField dataDir;
- // private JButton dataDirBrowser;
- // private JTextField outDir;
- // private JButton outDirBrowser;
- private JTextField filesPrefix;
- private MessageCenter msg;
- private JFormattedTextField startDate;
- private JFormattedTextField endDate;
- private JRadioButton applicationBtn, spinupBtn;
- private boolean spinup = false;
-
- private FestcApplication app;
- private Epic2CMAQFields fields;
-
- public Epic2CMAQPanel(FestcApplication festcApp) {
- app = festcApp;
- msg = app.getMessageCenter();
- fields = new Epic2CMAQFields();
- app.getProject().addPage(fields);
- app.addPlotListener(this);
- add(createPanel());
- }
-
- private JPanel createPanel() {
- init();
- JPanel mainPanel = new JPanel();
- mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
- mainPanel.add(getNorthPanel());
- mainPanel.add(getCenterPanel());
- mainPanel.add(getSouthPanel());
- mainPanel.add(messageBox());
- return mainPanel;
- }
-
- private JPanel getNorthPanel() {
- JPanel panel = new JPanel();
- JLabel title = new JLabel(Constants.EPIC2CMAQ, SwingConstants.CENTER);
- title.setFont(new Font("Default", Font.BOLD, 20));
-
- panel.add(title);
- panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 20, 0));
-
- return panel;
- }
-
- private JPanel getSouthPanel() {
- JPanel panel = new JPanel();
- JButton display = new JButton(runAction());
- panel.add(display);
-
- panel.setBorder(BorderFactory.createEmptyBorder(30, 0, 10, 0));
-
- return panel;
- }
-
- private JPanel getCenterPanel() {
- JPanel panel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
- JPanel filesPrefixPanel = new JPanel();
- filesPrefix = new JTextField(40);
- filesPrefixPanel.add(filesPrefix);
-
- JPanel startDatePanel = new JPanel();
- NumberFormat snf = NumberFormat.getNumberInstance();
- snf.setGroupingUsed(false);
- startDate = new JFormattedTextField(snf);
- startDate.setColumns(40);
- startDatePanel.add(startDate);
-
- JPanel endDatePanel = new JPanel();
- NumberFormat enf = NumberFormat.getNumberInstance();
- enf.setGroupingUsed(false);
- endDate = new JFormattedTextField(enf);
- endDate.setColumns(40);
- endDatePanel.add(endDate);
-
- JPanel butPanel = new JPanel();
- this.applicationBtn = new JRadioButton(applicationSelection());
- this.spinupBtn = new JRadioButton(spinupSelection());
- this.applicationBtn.setSelected(true);
- this.spinupBtn.setSelected(false);
- butPanel.add(this.spinupBtn);
- butPanel.add(this.applicationBtn);
-
- ButtonGroup btnGroup = new ButtonGroup();
- btnGroup.add(this.spinupBtn);
- btnGroup.add(this.applicationBtn);
-
- layout.addLabelWidgetPair("Grid Description:", getGridDescPanel(false), panel);
- layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
- layout.addLabelWidgetPair("Start Date (YYYYMMDD):", startDatePanel, panel);
- layout.addLabelWidgetPair("End Date (YYYYMMDD):", endDatePanel, panel);
- layout.addLabelWidgetPair("Output File Prefix:", filesPrefixPanel, panel);
- layout.addLabelWidgetPair("Output Type:", butPanel, panel);
-
- layout.makeCompactGrid(panel, 6, 2, // number of rows and cols
- 10, 10, // initial X and Y
- 5, 5); // x and y pading
-
- return panel;
- }
-
- private Action applicationSelection() {
- return new AbstractAction("EPIC APP") {
- public void actionPerformed(ActionEvent e) {
- processSelec();
- }
-
- };
- }
-
- private Action spinupSelection() {
- return new AbstractAction("EPIC SPINUP") {
- public void actionPerformed(ActionEvent e) {
- processSelec();
- }
-
- };
- }
-
- private void processSelec() {
- if (applicationBtn.isSelected()) {
- spinup = false;
- } else {
- spinup = true;
- }
- }
-
- private Action runAction() {
- return new AbstractAction("Run") {
- private static final long serialVersionUID = 5806383737068197305L;
-
- public void actionPerformed(ActionEvent e) {
- try {
- validateFields();
- final String file = writeScript();
-
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- runScript(file);
- }
- });
- populateThread.start();
- } catch (Exception exc) {
- app.showMessage("Run script", exc.getMessage());
- }
- }
- };
- }
-
- private void validateFields() throws Exception {
-
- String sahome = Constants.getProperty(Constants.SA_HOME, msg);
- if (sahome == null || sahome.trim().isEmpty() || !(new File(sahome).exists()))
- throw new Exception("Error loading spacial allocator home:" + sahome + " doesn't exist");
-
- String scenarioDir = this.scenarioDir.getText();
- if (scenarioDir == null || scenarioDir.isEmpty())
- throw new Exception("Please select scenario dir first!");
-
- validateGrids();
-
- if (filesPrefix.getText() == null || filesPrefix.getText().trim().isEmpty())
- throw new Exception("Please specify a valid output files prefix.");
-
- String start = startDate.getText();
- if (start == null || start.trim().isEmpty())
- throw new Exception("Start date field is empty.");
-
- if (start.trim().length() != 8)
- throw new Exception("Star date format is not right.");
-
- if (start.trim().charAt(0) == '0')
- throw new Exception("Start date value is invalid.");
-
- String end = endDate.getText();
- if (end == null || end.trim().isEmpty())
- throw new Exception("End date field is empty.");
-
- if (end.trim().length() != 8)
- throw new Exception("End date format is not right.");
-
- if (end.trim().charAt(0) == '0')
- throw new Exception("End date value is invalid.");
- }
-
- protected String writeScript() throws Exception {
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or
- // java.sql.Timestamp!
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
- String scenario = scenarioDir.getText().trim();
- String file = scenario.trim() + "/scripts";
-
- String sahome = Constants.getProperty(Constants.SA_HOME, msg);
-
- outMessages += "SA home: " + sahome + ls;
-
- if (!file.endsWith(System.getProperty("file.separator")))
- file += System.getProperty("file.separator");
-
- // file += "epic2CMAQ_" + timeStamp + ".csh";
- if (spinup)
- file = file.trim() + "/epic2CMAQ_spinup_" + timeStamp + ".csh";
- else
- file = file.trim() + "/epic2CMAQ_app_" + timeStamp + ".csh";
-
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append(getScirptHeader() + ls);
- sb.append("#" + ls + "# Set up runtime environment" + ls + "#" + ls);
- sb.append("source " + sahome.trim() + Constants.SA_SETUP_FILE + ls + ls);
- sb.append("setenv SCEN_DIR " + scenario + ls);
- sb.append("setenv SA_HOME " + sahome + ls);
- sb.append("#" + ls + "# Define domain grids" + ls + "#" + ls);
- sb.append("setenv GRID_PROJ \"" + proj4proj.getText().trim() + "\"" + ls + ls);
- sb.append("setenv GRID_ROWS " + ((Number) rows.getValue()).intValue() + ls);
- sb.append("setenv GRID_COLUMNS " + ((Number) cols.getValue()).intValue() + ls + ls);
- sb.append("setenv GRID_XMIN " + ((Number) xmin.getValue()).doubleValue() + ls);
- sb.append("setenv GRID_YMIN " + ((Number) ymin.getValue()).doubleValue() + ls + ls);
- sb.append("setenv GRID_XCELLSIZE " + ((Number) xSize.getValue()).doubleValue() + ls);
- sb.append("setenv GRID_YCELLSIZE " + ((Number) ySize.getValue()).doubleValue() + ls + ls);
- sb.append("setenv GRID_NAME \"" + (gridName.getText() == null ? "" : gridName.getText().trim()) + "\"" + ls
- + ls);
- sb.append("#" + ls + "#set EPIC output file directory which containts each day data:" + ls + "#" + ls);
- if (spinup)
- sb.append("setenv DATA_DIR $SCEN_DIR/output4CMAQ/spinup/daily/" + ls + ls);
- else
- sb.append("setenv DATA_DIR $SCEN_DIR/output4CMAQ/app/daily/" + ls + ls);
-
- // sb.append("setenv DATA_DIR $SCEN_DIR/output4CMAQ/app/daily" + ls +
- // ls);
- sb.append("#" + ls + "#Set date and time range: YYYYMMDDHHMM" + ls + "#" + ls);
- sb.append("setenv START_DATE " + startDate.getText() + ls);
- sb.append("setenv END_DATE " + endDate.getText() + ls + ls);
- // sb.append("#" + ls + "# Output files: three output files for soil,
- // EPIC daily output, and fertilizer application data" + ls + "#" + ls);
- // sb.append("setenv SOIL_OUTPUT_NETCDF_FILE \"" +
- // outDir.getText().trim() + "/" + filesPrefix.getText().trim() +
- // "_soil.nc\"" + ls);
- // sb.append("setenv DAILY_OUTPUT_NETCDF_FILE \"" +
- // outDir.getText().trim() + "/" + filesPrefix.getText().trim() +
- // "_time\"" + ls + ls);
- // sb.append("setenv FERTILIZER_OUTPUT_NETCDF_FILE \"" +
- // outDir.getText().trim() + "/" + filesPrefix.getText().trim() +
- // "_fert.nc\"" + ls + ls);
- sb.append("#" + ls + "# Output file prefix for soil and EPIC daily output" + ls
- + "# \"prefix\"_soil.nc for soil ouput and \"prefix\"_time\"yyyymm\".nc for daily EPIC output" + ls
- + "#" + ls);
- if (spinup)
- sb.append("setenv OUTPUT_NETCDF_FILE_PREFIX $SCEN_DIR/output4CMAQ/spinup/toCMAQ/"
- + filesPrefix.getText().trim() + ls);
- else
- sb.append("setenv OUTPUT_NETCDF_FILE_PREFIX $SCEN_DIR/output4CMAQ/app/toCMAQ/"
- + filesPrefix.getText().trim() + ls);
- sb.append("#" + ls + "# run the EPIC output processing program" + ls + "#" + ls);
- sb.append("$SA_HOME/bin/64bits/extractEPIC2CMAQ.exe" + ls + ls);
- sb.append("if ( $status == 0 ) then" + ls);
- sb.append(" echo ==== Finished EPIC to CMAQ run. " + ls);
- sb.append("else " + ls);
- sb.append(" echo ==== Error in EPIC to CMAQ run. " + ls);
- sb.append("endif " + ls);
- sb.append("#===================================================================" + ls);
-
- String mesg = "";
- try {
- File script = new File(file);
- Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- mesg += "Created a script file: " + file + "\n";
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception(e.getMessage());
- }
- app.showMessage("Write script", mesg);
- return file;
- }
-
- private String getScirptHeader() {
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to process EPIC modeling output for CMAQ bi-directional ammonia surface" + ls);
- sb.append("# flux modeling " + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
- sb.append("# in support of the CMAS project, 2010" + ls);
- sb.append("#" + ls);
- sb.append("# Written by: LR, July-Sept 2010" + ls);
- sb.append("#" + ls);
- sb.append("# Program: extractEPIC2CMAQ.exe" + ls);
- sb.append("# Needed environment variables included in the script file to run." + ls);
- sb.append("#" + ls);
- sb.append("#***************************************************************************************" + ls + ls);
-
- return sb.toString();
- }
-
- private void runScript(final String file) {
- String log = file + ".log";
-
- outMessages += "Script file: " + file + ls;
- outMessages += "Log file: " + log + ls;
- runMessages.setText(outMessages);
- runMessages.validate();
- FileRunner.runScript(file, log, msg);
- }
-
- @Override
- public void projectLoaded() {
- fields = (Epic2CMAQFields) app.getProject().getPage(fields.getName());
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if (fields != null) {
- String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length() > 0)
- this.scenarioDir.setText(scenloc);
- else
- this.scenarioDir.setText(fields.getScenarioDir());
- rows.setValue(fields.getRows());
- cols.setValue(fields.getCols());
- xSize.setValue(fields.getXcellSize());
- ySize.setValue(fields.getYcellSize());
- xmin.setValue(fields.getXmin());
- ymin.setValue(fields.getYmin());
- proj4proj.setText(fields.getProj());
- gridName.setText(fields.getGridName());
- try {
- startDate.setValue(NumberFormat.getNumberInstance()
- .parse(fields.getStartdate() == null ? "" : fields.getStartdate()));
- endDate.setValue(
- NumberFormat.getNumberInstance().parse(fields.getEnddate() == null ? "" : fields.getEnddate()));
- } catch (ParseException e) {
- startDate.setValue(0);
- endDate.setValue(0);
- }
- filesPrefix.setText(fields.getOutfileprefix());
- runMessages.setText(fields.getMessage());
- } else {
- newProjectCreated();
- }
- }
-
- @Override
- public void saveProjectRequested() {
- if (scenarioDir != null)
- domain.setScenarioDir(scenarioDir.getText() == null ? "" : scenarioDir.getText());
- if (scenarioDir != null)
- fields.setScenarioDir(scenarioDir.getText());
- if (rows != null)
- fields.setRows(Integer.parseInt(rows.getText() == null ? "" : rows.getValue() + ""));
- if (cols != null)
- fields.setCols(Integer.parseInt(cols.getText() == null ? "" : cols.getValue() + ""));
- if (xSize != null)
- fields.setXcellSize(Float.parseFloat(xSize.getText() == null ? "" : xSize.getValue() + ""));
- if (ySize != null)
- fields.setYcellSize(Float.parseFloat(ySize.getText() == null ? "" : ySize.getValue() + ""));
- if (xmin != null)
- fields.setXmin(Float.parseFloat(xmin.getText() == null ? "" : xmin.getValue() + ""));
- if (ymin != null)
- fields.setYmin(Float.parseFloat(ymin.getText() == null ? "" : ymin.getValue() + ""));
- if (proj4proj != null)
- fields.setProj(proj4proj.getText() == null ? "" : proj4proj.getText());
- if (gridName != null)
- fields.setGridName(gridName.getText() == null ? "" : gridName.getText());
- if (startDate != null)
- fields.setStartdate(startDate.getValue() == null ? "" : startDate.getText());
- if (endDate != null)
- fields.setEnddate(endDate.getValue() == null ? "" : endDate.getText());
- if (filesPrefix != null)
- fields.setOutfileprefix(filesPrefix.getText() == null ? "" : filesPrefix.getText());
- if (runMessages != null)
- fields.setMessage(runMessages.getText());
- }
-
- @Override
- public void newProjectCreated() {
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- scenarioDir.setText(domain.getScenarioDir());
- rows.setValue(domain.getRows());
- cols.setValue(domain.getCols());
- xmin.setValue(domain.getXmin());
- ymin.setValue(domain.getYmin());
- xSize.setValue(domain.getXcellSize());
- ySize.setValue(domain.getYcellSize());
- proj4proj.setText(domain.getProj());
- gridName.setText(domain.getGridName());
- runMessages.setText("");
- fields.setOutfileprefix("");
- try {
- startDate.setValue(NumberFormat.getNumberInstance().parse(domain.getSimYear().trim() + "0101"));
- endDate.setValue(NumberFormat.getNumberInstance().parse(domain.getSimYear().trim() + "1231"));
- } catch (ParseException e) {
- startDate.setValue(0);
- endDate.setValue(0);
- }
-
- if (fields == null) {
- fields = new Epic2CMAQFields();
- app.getProject().addPage(fields);
- }
- }
-
-}
+package gov.epa.festc.gui;
+
+import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.text.NumberFormat;
+import java.text.ParseException;
+import java.text.SimpleDateFormat;
+import java.util.Date;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.BoxLayout;
+import javax.swing.ButtonGroup;
+import javax.swing.JButton;
+import javax.swing.JFormattedTextField;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JRadioButton;
+import javax.swing.JTextField;
+import javax.swing.SpringLayout;
+import javax.swing.SwingConstants;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.proj.DomainFields;
+import gov.epa.festc.core.proj.Epic2CMAQFields;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.FileRunner;
+import gov.epa.festc.util.SpringLayoutGenerator;
+import simphony.util.messages.MessageCenter;
+
+public class Epic2CMAQPanel extends UtilFieldsPanel implements PlotEventListener {
+ private static final long serialVersionUID = 4247819754945274135L;
+ //
+ // private JTextField dataDir;
+ // private JButton dataDirBrowser;
+ // private JTextField outDir;
+ // private JButton outDirBrowser;
+ private JTextField filesPrefix;
+ private MessageCenter msg;
+ private JFormattedTextField startDate;
+ private JFormattedTextField endDate;
+ private JRadioButton applicationBtn, spinupBtn;
+ private boolean spinup = false;
+
+ private FestcApplication app;
+ private Epic2CMAQFields fields;
+
+ public Epic2CMAQPanel(FestcApplication festcApp) {
+ app = festcApp;
+ msg = app.getMessageCenter();
+ fields = new Epic2CMAQFields();
+ app.getProject().addPage(fields);
+ app.addPlotListener(this);
+ add(createPanel());
+ }
+
+ private JPanel createPanel() {
+ init();
+ JPanel mainPanel = new JPanel();
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
+ mainPanel.add(getNorthPanel());
+ mainPanel.add(getCenterPanel());
+ mainPanel.add(getSouthPanel());
+ mainPanel.add(messageBox());
+ return mainPanel;
+ }
+
+ private JPanel getNorthPanel() {
+ JPanel panel = new JPanel();
+ JLabel title = new JLabel(Constants.EPIC2CMAQ, SwingConstants.CENTER);
+ title.setFont(new Font("Default", Font.BOLD, 20));
+
+ panel.add(title);
+ panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 20, 0));
+
+ return panel;
+ }
+
+ private JPanel getSouthPanel() {
+ JPanel panel = new JPanel();
+ JButton display = new JButton(runAction());
+ panel.add(display);
+
+ panel.setBorder(BorderFactory.createEmptyBorder(30, 0, 10, 0));
+
+ return panel;
+ }
+
+ private JPanel getCenterPanel() {
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+
+ JPanel filesPrefixPanel = new JPanel();
+ filesPrefix = new JTextField(40);
+ filesPrefixPanel.add(filesPrefix);
+
+ JPanel startDatePanel = new JPanel();
+ NumberFormat snf = NumberFormat.getNumberInstance();
+ snf.setGroupingUsed(false);
+ startDate = new JFormattedTextField(snf);
+ startDate.setColumns(40);
+ startDatePanel.add(startDate);
+
+ JPanel endDatePanel = new JPanel();
+ NumberFormat enf = NumberFormat.getNumberInstance();
+ enf.setGroupingUsed(false);
+ endDate = new JFormattedTextField(enf);
+ endDate.setColumns(40);
+ endDatePanel.add(endDate);
+
+ JPanel butPanel = new JPanel();
+ this.applicationBtn = new JRadioButton(applicationSelection());
+ this.spinupBtn = new JRadioButton(spinupSelection());
+ this.applicationBtn.setSelected(true);
+ this.spinupBtn.setSelected(false);
+ butPanel.add(this.spinupBtn);
+ butPanel.add(this.applicationBtn);
+
+ ButtonGroup btnGroup = new ButtonGroup();
+ btnGroup.add(this.spinupBtn);
+ btnGroup.add(this.applicationBtn);
+
+ layout.addLabelWidgetPair("Grid Description:", getGridDescPanel(false), panel);
+ layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
+ layout.addLabelWidgetPair("Start Date (YYYYMMDD):", startDatePanel, panel);
+ layout.addLabelWidgetPair("End Date (YYYYMMDD):", endDatePanel, panel);
+ layout.addLabelWidgetPair("Output File Prefix:", filesPrefixPanel, panel);
+ layout.addLabelWidgetPair("Output Type:", butPanel, panel);
+
+ layout.makeCompactGrid(panel, 6, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+
+ return panel;
+ }
+
+ private Action applicationSelection() {
+ return new AbstractAction("EPIC APP") {
+ public void actionPerformed(ActionEvent e) {
+ processSelec();
+ }
+
+ };
+ }
+
+ private Action spinupSelection() {
+ return new AbstractAction("EPIC SPINUP") {
+ public void actionPerformed(ActionEvent e) {
+ processSelec();
+ }
+
+ };
+ }
+
+ private void processSelec() {
+ if (applicationBtn.isSelected()) {
+ spinup = false;
+ } else {
+ spinup = true;
+ }
+ }
+
+ private Action runAction() {
+ return new AbstractAction("Run") {
+ private static final long serialVersionUID = 5806383737068197305L;
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+ validateFields();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ final String jobFile = writeScript();
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir.getText());
+ } else {
+ batchFile = null;
+ }
+
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile);
+ }
+ }
+ });
+ populateThread.start();
+ } catch (Exception exc) {
+ app.showMessage("Run script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private void validateFields() throws Exception {
+
+ String sahome = Constants.getProperty(Constants.SA_HOME, msg);
+// if (sahome == null || sahome.trim().isEmpty() || !(new File(sahome).exists()))
+ if (sahome == null || sahome.trim().isEmpty())
+ throw new Exception("Error loading spacial allocator home:" + sahome + " doesn't exist");
+
+ String scenarioDir = this.scenarioDir.getText();
+ if (scenarioDir == null || scenarioDir.isEmpty())
+ throw new Exception("Please select scenario dir first!");
+
+ validateGrids();
+
+ if (filesPrefix.getText() == null || filesPrefix.getText().trim().isEmpty())
+ throw new Exception("Please specify a valid output files prefix.");
+
+ String start = startDate.getText();
+ if (start == null || start.trim().isEmpty())
+ throw new Exception("Start date field is empty.");
+
+ if (start.trim().length() != 8)
+ throw new Exception("Star date format is not right.");
+
+ if (start.trim().charAt(0) == '0')
+ throw new Exception("Start date value is invalid.");
+
+ String end = endDate.getText();
+ if (end == null || end.trim().isEmpty())
+ throw new Exception("End date field is empty.");
+
+ if (end.trim().length() != 8)
+ throw new Exception("End date format is not right.");
+
+ if (end.trim().charAt(0) == '0')
+ throw new Exception("End date value is invalid.");
+ }
+
+ protected String writeScript() throws Exception {
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String scenario = scenarioDir.getText().trim();
+ String file = scenario.trim() + "/scripts";
+
+ String sahome = Constants.getProperty(Constants.SA_HOME, msg);
+
+ outMessages += "SA home: " + sahome + ls;
+
+ if (!file.endsWith(System.getProperty("file.separator")))
+ file += System.getProperty("file.separator");
+
+ // file += "epic2CMAQ_" + timeStamp + ".csh";
+ if (spinup)
+ file = file.trim() + "/epic2CMAQ_spinup_" + timeStamp + ".csh";
+ else
+ file = file.trim() + "/epic2CMAQ_app_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append(getScirptHeader() + ls);
+ sb.append("#" + ls + "# Set up runtime environment" + ls + "#" + ls);
+
+// String rModules = Constants.getProperty(Constants.QUEUE_R_MODULE, msg);
+// sb.append("module load " + rModules + ls);
+
+ sb.append("source " + sahome.trim() + Constants.SA_SETUP_FILE + ls + ls);
+ sb.append("setenv SCEN_DIR " + scenario + ls);
+ sb.append("setenv SA_HOME " + sahome + ls);
+ sb.append("#" + ls + "# Define domain grids" + ls + "#" + ls);
+ sb.append("setenv GRID_PROJ \"" + proj4proj.getText().trim() + "\"" + ls + ls);
+ sb.append("setenv GRID_ROWS " + ((Number) rows.getValue()).intValue() + ls);
+ sb.append("setenv GRID_COLUMNS " + ((Number) cols.getValue()).intValue() + ls + ls);
+ sb.append("setenv GRID_XMIN " + ((Number) xmin.getValue()).doubleValue() + ls);
+ sb.append("setenv GRID_YMIN " + ((Number) ymin.getValue()).doubleValue() + ls + ls);
+ sb.append("setenv GRID_XCELLSIZE " + ((Number) xSize.getValue()).doubleValue() + ls);
+ sb.append("setenv GRID_YCELLSIZE " + ((Number) ySize.getValue()).doubleValue() + ls + ls);
+ sb.append("setenv GRID_NAME \"" + (gridName.getText() == null ? "" : gridName.getText().trim()) + "\"" + ls
+ + ls);
+
+ if (!spinup) {
+ sb.append("#Process multiple years" + ls);
+ sb.append("set SIM_YEAR=\"$SCEN_DIR/output4CMAQ/app/[1-2][0-9][0-9][0-9]\"" + ls);
+ }
+
+
+ if (spinup) {
+ sb.append("#" + ls + "#set EPIC output file directory which contains each day data:" + ls + "#" + ls);
+ sb.append("setenv DATA_DIR $SCEN_DIR/output4CMAQ/spinup/daily/" + ls + ls);
+ sb.append("#" + ls + "#Set date and time range: YYYYMMDDHHMM" + ls + "#" + ls);
+ sb.append("setenv START_DATE " + startDate.getText() + ls);
+ sb.append("setenv END_DATE " + endDate.getText() + ls + ls);
+ sb.append("#" + ls + "# Output file prefix for soil and EPIC daily output" + ls
+ + "# \"prefix\"_soil.nc for soil ouput and \"prefix\"_time\"yyyymm\".nc for daily EPIC output" + ls
+ + "#" + ls);
+ sb.append("setenv OUTPUT_NETCDF_FILE_PREFIX $SCEN_DIR/output4CMAQ/spinup/toCMAQ/"
+ + filesPrefix.getText().trim() + ls);
+ sb.append("#" + ls + "# run the EPIC output processing program" + ls + "#" + ls);
+ sb.append("$SA_HOME/bin/64bits/extractEPIC2CMAQ.exe" + ls + ls);
+ } else {
+ sb.append("foreach MULTI_YEAR_DIR ($SIM_YEAR)" + ls);
+ sb.append(" set MULTI_YEAR=`basename $MULTI_YEAR_DIR`" + ls);
+ sb.append(" #" + ls + " #set EPIC output file directory which contains each day data:" + ls + " #" + ls);
+ sb.append(" setenv DATA_DIR $SCEN_DIR/output4CMAQ/app/${MULTI_YEAR}/daily/" + ls + ls);
+ sb.append(" #" + ls + " #Set date and time range: YYYYMMDDHHMM" + ls + " #" + ls);
+// sb.append(" setenv START_DATE ${MULTI_YEAR}" + startDate.getText() + ls);
+// sb.append(" setenv END_DATE ${MULTI_YEAR}" + endDate.getText() + ls + ls);
+ sb.append(" setenv START_DATE ${MULTI_YEAR}\"0101\"" + ls);
+ sb.append(" setenv END_DATE ${MULTI_YEAR}\"1231\"" + ls);
+ sb.append(" #" + ls + " # Output file prefix for soil and EPIC daily output" + ls
+ + " # \"prefix\"_soil.nc for soil ouput and \"prefix\"_time\"yyyymm\".nc for daily EPIC output" + ls
+ + " #" + ls);
+ sb.append(" setenv OUTPUT_NETCDF_FILE_PREFIX $SCEN_DIR/output4CMAQ/app/${MULTI_YEAR}/toCMAQ/"
+ + filesPrefix.getText().trim() + ls);
+ sb.append(" #" + ls + " # run the EPIC output processing program" + ls + " #" + ls);
+ sb.append(" $SA_HOME/bin/64bits/extractEPIC2CMAQ.exe" + ls + "end" + ls + ls);
+ }
+
+ sb.append("if ( $status == 0 ) then" + ls);
+ sb.append(" echo ==== Finished EPIC to CMAQ run. " + ls);
+ sb.append("else " + ls);
+ sb.append(" echo ==== Error in EPIC to CMAQ run. " + ls);
+ sb.append("endif " + ls);
+ sb.append("#===================================================================" + ls);
+
+ String mesg = "";
+ try {
+ File script = new File(file);
+ Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ mesg += "Created a script file: " + file + "\n";
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
+ app.showMessage("Write script", mesg);
+ return file;
+ }
+
+ // This is legacy code that has been moved to it's own method
+ protected void writeScriptFile(String file, String content) {
+
+ String mesg = "";
+
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(content);
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ // printStackTrace();
+ // g.error("Error generating EPIC script file", e);
+ app.showMessage("Write script", e.getMessage());
+ }
+
+ app.showMessage("Write script", mesg);
+ }
+
+ protected String writeBatchFile(String jobFile, String scenarioDir) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitEpic2CMAQ_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
+
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+ private String getScirptHeader() {
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh -f" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to process EPIC modeling output for CMAQ bi-directional ammonia surface" + ls);
+ sb.append("# flux modeling " + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
+ sb.append("# in support of the CMAS project, 2010" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by: LR, July-Sept 2010" + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: extractEPIC2CMAQ.exe" + ls);
+ sb.append("# Needed environment variables included in the script file to run." + ls);
+ sb.append("#" + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ return sb.toString();
+ }
+
+ private void runScript(final String file) {
+ String log = file + ".log";
+
+ outMessages += "Script file: " + file + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+ FileRunner.runScript(file, log, msg);
+ }
+
+ private void runBatchScript(final String batchFile, final String jobFile) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qEpic2Cmaq = Constants.getProperty(Constants.QUEUE_EPIC2CMAQ, msg);
+
+ File script = new File(batchFile.replaceAll("\\\\", "\\\\\\\\"));
+
+ sb.append(qcmd + " " + qEpic2Cmaq + " -o " + log + " " + script.getAbsolutePath());
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
+ @Override
+ public void projectLoaded() {
+ fields = (Epic2CMAQFields) app.getProject().getPage(fields.getName());
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ if (fields != null) {
+ String scenloc = domain.getScenarioDir();
+ if (scenloc != null && scenloc.trim().length() > 0)
+ this.scenarioDir.setText(scenloc);
+ else
+ this.scenarioDir.setText(fields.getScenarioDir());
+ rows.setValue(fields.getRows());
+ cols.setValue(fields.getCols());
+ xSize.setValue(fields.getXcellSize());
+ ySize.setValue(fields.getYcellSize());
+ xmin.setValue(fields.getXmin());
+ ymin.setValue(fields.getYmin());
+ proj4proj.setText(fields.getProj());
+ gridName.setText(fields.getGridName());
+ try {
+ startDate.setValue(NumberFormat.getNumberInstance()
+ .parse(fields.getStartdate() == null ? "" : fields.getStartdate()));
+ endDate.setValue(
+ NumberFormat.getNumberInstance().parse(fields.getEnddate() == null ? "" : fields.getEnddate()));
+ } catch (ParseException e) {
+ startDate.setValue(0);
+ endDate.setValue(0);
+ }
+ filesPrefix.setText(fields.getOutfileprefix());
+ runMessages.setText(fields.getMessage());
+ } else {
+ newProjectCreated();
+ }
+ }
+
+ @Override
+ public void saveProjectRequested() {
+ if (scenarioDir != null)
+ domain.setScenarioDir(scenarioDir.getText() == null ? "" : scenarioDir.getText());
+ if (scenarioDir != null)
+ fields.setScenarioDir(scenarioDir.getText());
+ if (rows != null)
+ fields.setRows(Integer.parseInt(rows.getText() == null ? "" : rows.getValue() + ""));
+ if (cols != null)
+ fields.setCols(Integer.parseInt(cols.getText() == null ? "" : cols.getValue() + ""));
+ if (xSize != null)
+ fields.setXcellSize(Float.parseFloat(xSize.getText() == null ? "" : xSize.getValue() + ""));
+ if (ySize != null)
+ fields.setYcellSize(Float.parseFloat(ySize.getText() == null ? "" : ySize.getValue() + ""));
+ if (xmin != null)
+ fields.setXmin(Float.parseFloat(xmin.getText() == null ? "" : xmin.getValue() + ""));
+ if (ymin != null)
+ fields.setYmin(Float.parseFloat(ymin.getText() == null ? "" : ymin.getValue() + ""));
+ if (proj4proj != null)
+ fields.setProj(proj4proj.getText() == null ? "" : proj4proj.getText());
+ if (gridName != null)
+ fields.setGridName(gridName.getText() == null ? "" : gridName.getText());
+ if (startDate != null)
+ fields.setStartdate(startDate.getValue() == null ? "" : startDate.getText());
+ if (endDate != null)
+ fields.setEnddate(endDate.getValue() == null ? "" : endDate.getText());
+ if (filesPrefix != null)
+ fields.setOutfileprefix(filesPrefix.getText() == null ? "" : filesPrefix.getText());
+ if (runMessages != null)
+ fields.setMessage(runMessages.getText());
+ }
+
+ @Override
+ public void newProjectCreated() {
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ scenarioDir.setText(domain.getScenarioDir());
+ rows.setValue(domain.getRows());
+ cols.setValue(domain.getCols());
+ xmin.setValue(domain.getXmin());
+ ymin.setValue(domain.getYmin());
+ xSize.setValue(domain.getXcellSize());
+ ySize.setValue(domain.getYcellSize());
+ proj4proj.setText(domain.getProj());
+ gridName.setText(domain.getGridName());
+ runMessages.setText("");
+ fields.setOutfileprefix("");
+ try {
+ startDate.setValue(NumberFormat.getNumberInstance().parse(domain.getSimYear().trim() + "0101"));
+ endDate.setValue(NumberFormat.getNumberInstance().parse(domain.getSimYear().trim() + "1231"));
+ } catch (ParseException e) {
+ startDate.setValue(0);
+ endDate.setValue(0);
+ }
+
+ if (fields == null) {
+ fields = new Epic2CMAQFields();
+ app.getProject().addPage(fields);
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/Epic2SWATPanel.java b/festc_core/src/gov/epa/festc/gui/Epic2SWATPanel.java
index 32ce08c..5808793 100644
--- a/festc_core/src/gov/epa/festc/gui/Epic2SWATPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/Epic2SWATPanel.java
@@ -1,774 +1,943 @@
-package gov.epa.festc.gui;
-
-import java.awt.Font;
-import java.awt.event.ActionEvent;
-import java.io.BufferedWriter;
-import java.io.File;
-import java.io.FileWriter;
-import java.io.IOException;
-import java.text.NumberFormat;
-import java.text.ParseException;
-import java.text.SimpleDateFormat;
-import java.util.Date;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.BorderFactory;
-import javax.swing.BoxLayout;
-import javax.swing.JButton;
-import javax.swing.JComboBox;
-import javax.swing.JFormattedTextField;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JTextField;
-import javax.swing.SpringLayout;
-import javax.swing.SwingConstants;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.core.proj.DomainFields;
-import gov.epa.festc.core.proj.Epic2SWATFields;
-import gov.epa.festc.util.BrowseAction;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.FileRunner;
-import gov.epa.festc.util.SpringLayoutGenerator;
-import simphony.util.messages.MessageCenter;
-
-public class Epic2SWATPanel extends UtilFieldsPanel implements PlotEventListener {
- private static final long serialVersionUID = 4247819754945274135L;
- private JTextField beld4Dir;
- private JButton beld4FileBrowser;
- private JButton ratioFileBrowser;
- private JButton weathFileBrowser;
-
- // private JTextField filesPrefix;
- private MessageCenter msg;
- private JTextField metdepFile;
- private JTextField depFile;
- private JTextField ratioFile;
- private JComboBox nDepSel;
- private JComboBox hucSel;
- private JFormattedTextField simYear;
-
- private FestcApplication app;
- private Epic2SWATFields fields;
-
- public Epic2SWATPanel(FestcApplication application) {
- app = application;
- msg = app.getMessageCenter();
- fields = new Epic2SWATFields();
- app.getProject().addPage(fields);
- app.addPlotListener(this);
- add(createPanel());
- }
-
- private JPanel createPanel() {
- init();
- JPanel mainPanel = new JPanel();
- mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
- mainPanel.add(getNorthPanel());
- mainPanel.add(getCenterPanel());
- mainPanel.add(getSouthPanel());
- mainPanel.add(messageBox());
- return mainPanel;
- }
-
- private JPanel getNorthPanel() {
- JPanel panel = new JPanel();
- JLabel title = new JLabel(Constants.EPIC2SWAT, SwingConstants.CENTER);
- title.setFont(new Font("Default", Font.BOLD, 20));
-
- panel.add(title);
- panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 20, 0));
-
- return panel;
- }
-
- private JPanel getSouthPanel() {
- JPanel panel = new JPanel();
- JButton runDaily = new JButton(runDailyAction());
- panel.add(runDaily);
- JButton runNDep = new JButton(runNDepAction());
- panel.add(runNDep);
- JButton runWeather = new JButton(runWeatAction());
- panel.add(runWeather);
- JButton runSWATin = new JButton(runSWATAction());
- panel.add(runSWATin);
-
- panel.setBorder(BorderFactory.createEmptyBorder(30, 0, 10, 0));
-
- return panel;
- }
-
- private JPanel getCenterPanel() {
- JPanel panel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
- JPanel beld4DirPanel = new JPanel();
- beld4Dir = new JTextField(40);
- beld4Dir.setToolTipText("I.E. share_data/beld4_cmaq12km_2001.nc");
- beld4FileBrowser = new JButton(BrowseAction.browseAction(this, app.getCurrentDir(), "BELD4 file", beld4Dir));
- beld4DirPanel.add(beld4Dir);
- beld4DirPanel.add(beld4FileBrowser);
-
- JPanel weatherPanel = new JPanel();
- metdepFile = new JTextField(40);
- metdepFile.setToolTipText("Select Site_weather_dep* file");
- weathFileBrowser = new JButton(BrowseAction.browseAction(this, app.getCurrentDir(), "WETDEP file", metdepFile));
- weatherPanel.add(metdepFile);
- weatherPanel.add(weathFileBrowser);
-
- JPanel ratioPanel = new JPanel();
- ratioFile = new JTextField(40);
- ratioFile.setToolTipText("Huc8 Delivery Ratio file");
- ratioFileBrowser = new JButton(
- BrowseAction.browseAction(this, app.getCurrentDir(), "HUC8 Ratio file", ratioFile));
- ratioPanel.add(ratioFile);
- ratioPanel.add(ratioFileBrowser);
-
- nDepSel = new JComboBox(Constants.SWAT_NDEPS);
- nDepSel.setSelectedIndex(1);
- nDepSel.setToolTipText("Select CMAQ deposition. ");
- hucSel = new JComboBox(Constants.AREAS);
- hucSel.setSelectedIndex(1);
- hucSel.setToolTipText("Select HUC. ");
-
- JPanel filesPrefixPanel = new JPanel();
- // filesPrefix = new JTextField(40);
- // filesPrefixPanel.add(filesPrefix);
- //
-
- // JPanel depField = new JPanel();
- // depFile = new JTextField(40);
- // depField.add(depFile);
- //
- // JPanel ratioField = new JPanel();
- // ratioFile = new JTextField(40);
- // ratioField.add(ratioFile);
-
- // JPanel startDatePanel = new JPanel();
- // NumberFormat snf = NumberFormat.getNumberInstance();
- // snf.setGroupingUsed(false);
- // startDate = new JFormattedTextField(snf);
- // startDate.setColumns(40);
- // startDatePanel.add(startDate);
-
- JPanel simYearPanel = new JPanel();
- NumberFormat enf = NumberFormat.getNumberInstance();
- enf.setGroupingUsed(false);
- simYear = new JFormattedTextField(enf);
- simYear.setColumns(20);
- simYearPanel.add(simYear);
- simYear.setEditable(false);
-
- // layout.addLabelWidgetPair("Grid Description:",
- // getGridDescPanel(false), panel);
- layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
- layout.addLabelWidgetPair("BELD4 NetCDF File: ", beld4DirPanel, panel);
- layout.addLabelWidgetPair("Met dep File:", weatherPanel, panel);
- layout.addLabelWidgetPair("HUC8 Delivery Ratio File:", ratioPanel, panel);
- layout.addLabelWidgetPair("Simulation Year:", simYearPanel, panel);
-
- layout.addLabelWidgetPair("Daily Average N Deposition: ", nDepSel, panel);
- layout.addLabelWidgetPair("Area Selection: ", hucSel, panel);
- // layout.addLabelWidgetPair("EPIC extraction Prefix:",
- // filesPrefixPanel, panel);
-
- layout.makeCompactGrid(panel, 7, 2, // number of rows and cols
- 10, 10, // initial X and Y
- 5, 5); // x and y pading
-
- return panel;
- }
-
- private Action runDailyAction() {
- return new AbstractAction("EPIC") {
- private static final long serialVersionUID = 5806383737068197305L;
-
- public void actionPerformed(ActionEvent e) {
- try {
- validateFields();
- final String file = writeEpicScript();
- ;
-
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- runScript(file);
- }
- });
- populateThread.start();
- } catch (Exception exc) {
- app.showMessage("Run script", exc.getMessage());
- }
- }
- };
- }
-
- private Action runNDepAction() {
- return new AbstractAction("NDEP") {
- private static final long serialVersionUID = 5806383737068197305L;
-
- public void actionPerformed(ActionEvent e) {
- try {
- validateFields();
- final String file = writeNDepScript();
-
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- runScript(file);
- }
- });
- populateThread.start();
- } catch (Exception exc) {
- app.showMessage("Run script", exc.getMessage());
- }
- }
- };
- }
-
- private Action runWeatAction() {
- return new AbstractAction("DailyWETH") {
- private static final long serialVersionUID = 5806383737068197305L;
-
- public void actionPerformed(ActionEvent e) {
- try {
- validateFields();
- final String file = writeWeatScript();
-
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- runScript(file);
- }
- });
- populateThread.start();
- } catch (Exception exc) {
- app.showMessage("Run script", exc.getMessage());
- }
- }
- };
- }
-
- private Action runSWATAction() {
- return new AbstractAction("SWAT INPUTS") {
- private static final long serialVersionUID = 5806383737068197305L;
-
- public void actionPerformed(ActionEvent e) {
- try {
- validateFields();
- final String file = writeSWATScript();
-
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- runScript(file);
- }
- });
- populateThread.start();
- } catch (Exception exc) {
- app.showMessage("Run script", exc.getMessage());
- }
- }
- };
- }
-
- private void validateFields() throws Exception {
-
- String sahome = Constants.getProperty(Constants.SA_HOME, msg);
- if (sahome == null || sahome.trim().isEmpty() || !(new File(sahome).exists()))
- throw new Exception("Error loading spacial allocator home:" + sahome + " doesn't exist");
-
- String scenarioDir = this.scenarioDir.getText();
- if (scenarioDir == null || scenarioDir.isEmpty())
- throw new Exception("Please select scenario dir first!");
-
- String sYear = simYear.getText();
- if (sYear == null || sYear.trim().isEmpty())
- throw new Exception("Simulation Year field is empty.");
- }
-
- private String writeEpicScript() throws Exception {
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or
- // java.sql.Timestamp!
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
-
- String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- String scenarioDir = this.scenarioDir.getText();
- File beld4F = new File(this.beld4Dir.getText());
- if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
- throw new Exception("Beld4 file is not existing!");
-
- outMessages += "Epic base: " + baseDir + ls;
-
- String file = scenarioDir.trim() + "/scripts";
-
- file = file.trim() + "/epic2swat_extract_dailyEpic_" + timeStamp + ".csh";
- // outMessages += file + ls;
-
- StringBuilder sb = new StringBuilder();
- sb.append(getEpicScriptHeader());
- String ls = "\n";
-
- sb.append("#" + ls);
- sb.append("# Set up runtime environment" + ls);
- sb.append("#" + ls);
-
- sb.append("setenv EPIC_DIR " + baseDir + ls);
- sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls);
- sb.append("setenv SIM_YEAR " + simYear.getText() + ls + ls);
-
- sb.append("# Get site infomation" + ls);
- sb.append("setenv SITE_FILE ${SHARE_DIR}/EPICSites_Info.csv" + ls + ls);
- sb.append("# Define BELD4 input file, get crop fractions " + ls);
- sb.append("setenv DOMAIN_BELD4_NETCDF " + beld4Dir.getText() + ls + ls);
-
- sb.append("# EPIC input location" + ls);
- sb.append("setenv DAY_DIR $SCEN_DIR/output4CMAQ/app/daily" + ls + ls);
- sb.append("# SWAT output location" + ls);
- sb.append("setenv OUTDIR $SCEN_DIR/output4SWAT/dailyEPIC" + ls);
- sb.append("if ( ! -e $OUTDIR/county ) mkdir -p $OUTDIR/county" + ls);
- sb.append("if ( ! -e $OUTDIR/state ) mkdir -p $OUTDIR/state" + ls);
- sb.append("if ( ! -e $OUTDIR/domain ) mkdir -p $OUTDIR/domain" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC8 ) mkdir -p $OUTDIR/HUC8" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC6 ) mkdir -p $OUTDIR/HUC6" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC2 ) mkdir -p $OUTDIR/HUC2" + ls + ls);
-
- // sb.append("setenv OUTFILE_PREFIX $OUTDIR/" + filesPrefix.getText() +
- // ls + ls);
- sb.append("setenv REGION " + hucSel.getSelectedItem() + ls + ls);
-
- // sb.append("cd $EPIC_DIR/util/swat/" + ls );
- sb.append("echo 'Run EPIC daily summary for swat: ' " + scenarioDir + ls);
-
- sb.append("R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/swat/epic2swat_extract_dailyEPIC.R "
- + "${SCEN_DIR}/scripts/epic2swat_extract_dailyEPIC.log" + ls + ls);
-
- String mesg = "";
- try {
- File script = new File(file);
- Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- mesg += "Created a script file: " + file + "\n";
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception(e.getMessage());
- }
- app.showMessage("Write script", mesg);
- return file;
- }
-
- private String writeNDepScript() throws Exception {
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or
- // java.sql.Timestamp!
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
-
- String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- String scenarioDir = this.scenarioDir.getText();
-
- String ndepSelection = (String) nDepSel.getSelectedItem();
- String ndepType = ndepSelection;
- if (ndepSelection.contains("2002"))
- ndepType = "dailyNDep_2004";
- else if (ndepSelection.contains("2010"))
- ndepType = "dailyNDep_2008";
-
- File beld4F = new File(this.beld4Dir.getText());
- if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
- throw new Exception("Beld4 file is not existing!");
-
- outMessages += "Epic base: " + baseDir + ls;
-
- String file = scenarioDir.trim() + "/scripts";
- // String year = domain.getSimYear();
-
- file = file.trim() + "/epic2swat_extract_NDEP_" + timeStamp + ".csh";
- // outMessages += file + ls;
-
- StringBuilder sb = new StringBuilder();
- sb.append(getNdepScriptHeader());
- String ls = "\n";
-
- sb.append("#" + ls);
- sb.append("# Set up runtime environment" + ls);
- sb.append("#" + ls);
-
- sb.append("setenv EPIC_DIR " + baseDir + ls);
- sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls + ls);
- sb.append("# Get site infomation" + ls);
- sb.append("setenv SITE_FILE ${SHARE_DIR}/allSites_Info.csv" + ls + ls);
-
- sb.append("# Define BELD4 input file" + ls);
- sb.append("setenv DOMAIN_BELD4_NETCDF " + beld4Dir.getText() + ls + ls);
- sb.append("# Location of deposition files " + ls);
-
- sb.append("setenv NDEP_TYPE " + ndepType + ls);
- sb.append("setenv NDEP_FILE " + metdepFile.getText() + ls);
-
- sb.append("# output location" + ls);
- sb.append("setenv OUTDIR $SCEN_DIR/output4SWAT/NDEP/" + ndepType + ls);
- sb.append("if ( ! -e $OUTDIR) mkdir -p $OUTDIR" + ls);
- sb.append("if ( ! -e $OUTDIR/county ) mkdir -p $OUTDIR/county" + ls);
- sb.append("if ( ! -e $OUTDIR/state ) mkdir -p $OUTDIR/state" + ls);
- sb.append("if ( ! -e $OUTDIR/domain ) mkdir -p $OUTDIR/domain" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC8 ) mkdir -p $OUTDIR/HUC8" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC6 ) mkdir -p $OUTDIR/HUC6" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC2 ) mkdir -p $OUTDIR/HUC2" + ls + ls);
-
- // sb.append("setenv REGION " + hucSel.getSelectedItem() + ls);
- // sb.append("cd $EPIC_DIR/util/swat/" + ls );
- sb.append("echo 'Extract daily depositon from yearly CMAQ or 2004/2008 averaged ndep: '" + scenarioDir + ls);
- sb.append("R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/swat/epic2swat_extract_daily_ndepCMAQ.R "
- + "${SCEN_DIR}/scripts/epic2swat_extract_daily_ndepCMAQ.log" + ls + ls);
-
- String mesg = "";
- try {
- File script = new File(file);
- Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- mesg += "Created a script file: " + file + "\n";
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception(e.getMessage());
- }
- app.showMessage("Write script", mesg);
- return file;
- }
-
- private String writeSWATScript() throws Exception {
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or
- // java.sql.Timestamp!
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
-
- String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- String scenarioDir = this.scenarioDir.getText();
-
- String ndepSelection = (String) nDepSel.getSelectedItem();
- String ndepType = ndepSelection;
- if (ndepSelection.contains("2002"))
- ndepType = "dailyNDep_2004";
- else if (ndepSelection.contains("2010"))
- ndepType = "dailyNDep_2008";
-
- File ratioF = new File(this.ratioFile.getText());
- if (ratioF == null || ratioF.isDirectory() || !ratioF.exists())
- throw new Exception("Ratio file is not existing!");
- File beld4F = new File(this.beld4Dir.getText());
- if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
- throw new Exception("Beld4 file is not existing!");
-
- outMessages += "Epic base: " + baseDir + ls;
-
- String file = scenarioDir.trim() + "/scripts";
- // String year = domain.getSimYear();
-
- file = file.trim() + "/extract_swatInputs_" + timeStamp + ".csh";
- // outMessages += file + ls;
-
- StringBuilder sb = new StringBuilder();
- sb.append(getSWATScriptHeader());
- String ls = "\n";
-
- sb.append("#" + ls);
- sb.append("# Set up runtime environment" + ls);
- sb.append("#" + ls);
-
- sb.append("setenv EPIC_DIR " + baseDir + ls);
- sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls + ls);
- sb.append("setenv NDEP_TYPE " + ndepType + ls);
- sb.append("setenv SIM_YEAR " + simYear.getText() + ls + ls);
- sb.append("setenv RUN_dailyEPIC YES" + ls);
- sb.append("setenv RUN_MET YES" + ls);
- sb.append("setenv RUN_NDEP YES" + ls);
-
- sb.append("# Get site infomation" + ls);
- sb.append("setenv SITE_FILE ${SHARE_DIR}/AllSites_Info.csv" + ls + ls);
- sb.append("# Define ratio input file" + ls);
- sb.append("setenv RATIO_FILE " + ratioF + ls + ls);
-
- sb.append("# output location" + ls);
- sb.append("setenv OUTDIR $SCEN_DIR/output4SWAT" + ls);
- sb.append("setenv SWAT_OUTDIR $SCEN_DIR/output4SWAT/swat_inputs" + ls);
- sb.append("if ( ! -e $OUTDIR) mkdir -p $OUTDIR" + ls);
- sb.append("if ( ! -e $SWAT_OUTDIR ) mkdir -p $SWAT_OUTDIR" + ls);
- sb.append("if ( ! -e $SWAT_OUTDIR/dailydep ) mkdir -p $SWAT_OUTDIR/dailydep" + ls);
- sb.append("if ( ! -e $SWAT_OUTDIR/dailyweath ) mkdir -p $SWAT_OUTDIR/dailyweath" + ls);
- sb.append("if ( ! -e $SWAT_OUTDIR/EPICinputPoint ) mkdir -p $SWAT_OUTDIR/EPICinputPoint" + ls);
-
- sb.append("echo 'Extract swat inputs: ' $SCEN_DIR" + ls);
- sb.append("R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/swat/extract_swatInputs.R "
- + "${SCEN_DIR}/scripts/extract_swatInputs_"+ ndepType + ".log" + ls + ls);
-
- String mesg = "";
- try {
- File script = new File(file);
- Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- mesg += "Created a script file: " + file + "\n";
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception(e.getMessage());
- }
- app.showMessage("Write script", mesg);
- return file;
- }
-
- private String writeWeatScript() throws Exception {
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or
- // java.sql.Timestamp!
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
-
- String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- String scenarioDir = this.scenarioDir.getText();
- File beld4F = new File(this.beld4Dir.getText());
- if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
- throw new Exception("Beld4 file is not existing!");
-
- String ndepSelection = (String) nDepSel.getSelectedItem();
- String ndepType = ndepSelection;
- if (ndepSelection.contains("2002"))
- ndepType = "dailyNDep_2004";
- else if (ndepSelection.contains("2010"))
- ndepType = "dailyNDep_2008";
-
- outMessages += "Epic base: " + baseDir + ls;
-
- String file = scenarioDir.trim() + "/scripts";
- // String year = domain.getSimYear();
-
- file = file.trim() + "/epic2swat_daily_metCMAQ_" + timeStamp + ".csh";
- // outMessages += file + ls;
-
- StringBuilder sb = new StringBuilder();
- sb.append(getWeatScriptHeader());
- String ls = "\n";
-
- sb.append("#" + ls);
- sb.append("# Set up runtime environment" + ls);
- sb.append("#" + ls);
-
- sb.append("setenv EPIC_DIR " + baseDir + ls);
- sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls + ls);
- sb.append("# Get site infomation" + ls);
- sb.append("setenv SITE_FILE ${SHARE_DIR}/allSites_Info.csv" + ls + ls);
- sb.append("# Define BELD4 input file, get crop fractions " + ls);
- sb.append("setenv DOMAIN_BELD4_NETCDF " + beld4Dir.getText() + ls + ls);
-
- sb.append("# met yearly file location" + ls);
- sb.append("setenv NDEP_TYPE " + ndepType + ls);
- sb.append("setenv DEPMET_FILE " + metdepFile.getText() + ls + ls);
-
- sb.append("# output location" + ls);
- sb.append("setenv OUTDIR $SCEN_DIR/output4SWAT/dailyWETH/" + ndepType + ls);
- sb.append("if ( ! -e $OUTDIR) mkdir -p $OUTDIR" + ls);
- sb.append("if ( ! -e $OUTDIR/county ) mkdir -p $OUTDIR/county" + ls);
- sb.append("if ( ! -e $OUTDIR/state ) mkdir -p $OUTDIR/state" + ls);
- sb.append("if ( ! -e $OUTDIR/domain ) mkdir -p $OUTDIR/domain" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC8 ) mkdir -p $OUTDIR/HUC8" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC6 ) mkdir -p $OUTDIR/HUC6" + ls);
- sb.append("if ( ! -e $OUTDIR/HUC2 ) mkdir -p $OUTDIR/HUC2" + ls + ls);
-
- sb.append("setenv REGION " + hucSel.getSelectedItem() + ls + ls);
- // sb.append("cd $EPIC_DIR/util/swat/" + ls );
- sb.append("echo 'Extract daily met/dep for SWAT from ' " + scenarioDir + ls);
- sb.append("R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/swat/epic2swat_extract_daily_metCMAQ.R "
- + "${SCEN_DIR}/scripts/epic2swat_extract_daily_metCMAQ.log" + ls + ls);
-
- String mesg = "";
- try {
- File script = new File(file);
- Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- mesg += "Created a script file: " + file + "\n";
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception(e.getMessage());
- }
- app.showMessage("Write script", mesg);
- return file;
- }
-
- private String getEpicScriptHeader() {
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: Prepare runoff inputs for SWAT by extracting " + ls);
- sb.append("# EPIC daily output files output4CMAQ/app/daily/*NCD " + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("# Developed by: UNC Institute for the Environment" + ls);
- sb.append("# Date: 10/30/2018" + ls);
- sb.append("#" + ls);
- sb.append("# Program: $EPIC_DIR/util/swat/epic2swat_extract_daily_epic.R" + ls);
- sb.append("#" + ls);
- sb.append("#***************************************************************************************" + ls + ls);
-
- return sb.toString();
- }
-
- private String getNdepScriptHeader() {
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: repare N Deposition inputs for SWAT by summarizing met data, " + ls);
- sb.append("# netcdf weather data under ${SHAREDIR}/ " + ls);
- sb.append("# $COMMON_data/EPIC_model/dailyNDep_200? " + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("# Developed by: UNC Institute for the Environment" + ls);
- sb.append("# Date: 10/30/2017" + ls);
- sb.append("#" + ls);
- sb.append("# Program: $EPIC_DIR/util/swat/epic2swat_extract_daily_ndep.R" + ls);
- sb.append("#" + ls);
- sb.append("#***************************************************************************************" + ls + ls);
-
- return sb.toString();
- }
-
- private String getWeatScriptHeader() {
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: Prepare N Deposition and weather inputs for SWAT by summarizing " + ls);
- sb.append("# netcdf weather data under ${SHAREDIR}/ " + ls);
- sb.append("# $COMMON_data/EPIC_model/dailyNDep_200?/ " + ls);
- sb.append("#" + ls);
- sb.append("#" + ls);
- sb.append("# Developed by: UNC Institute for the Environment" + ls);
- sb.append("# Date: 10/30/2017" + ls);
- sb.append("#" + ls);
- sb.append("# Program: $EPIC_DIR/util/swat/epic2swat_daily_depWETHnc.R" + ls);
- sb.append("#" + ls);
- sb.append("#***************************************************************************************" + ls + ls);
-
- return sb.toString();
- }
-
- private String getSWATScriptHeader() {
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: Prepare swat inputs: dailyEPIC, NDEP, and weather" + ls);
- sb.append("#" + ls);
- sb.append("# Developed by: UNC Institute for the Environment" + ls);
- sb.append("# Date: 10/30/2017" + ls);
- sb.append("#" + ls);
- sb.append("# Program: $EPIC_DIR/util/swat/extract_swatInputs.R" + ls);
- sb.append("#" + ls);
- sb.append("#***************************************************************************************" + ls + ls);
-
- return sb.toString();
- }
-
- private void runScript(final String file) {
- String log = file + ".log";
- outMessages += "Script file: " + file + ls;
- outMessages += "Log file: " + log + ls;
- runMessages.setText(outMessages);
- runMessages.validate();
- FileRunner.runScript(file, log, msg);
- }
-
- @Override
- public void projectLoaded() {
- fields = (Epic2SWATFields)app.getProject().getPage(fields.getName());
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if (fields != null) {
- fields = (Epic2SWATFields) app.getProject().getPage(fields.getName());
- String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length() > 0)
- this.scenarioDir.setText(scenloc);
- else
- this.scenarioDir.setText(fields.getScenarioDir());
- //
- try {
- simYear.setValue(
- NumberFormat.getNumberInstance().parse(domain.getSimYear() == null ? "" : domain.getSimYear()));
-
- } catch (ParseException e) {
- simYear.setValue(0);
- }
- String year = simYear.getText();
- if (fields.getMetdep() == null) {
- String depmet = domain.getScenarioDir().trim() + "/share_data/site_weather_dep_" + year + "0101"
- + "_to_" + year + "1231" + ".nc";
- this.metdepFile.setText(depmet);
- } else
- this.metdepFile.setText(fields.getMetdep());
- beld4Dir.setText(fields.getBeld4ncf());
- hucSel.setSelectedItem(fields.getHucSelection());
- nDepSel.setSelectedItem(fields.getNDepSelection() );
- ratioFile.setText(fields.getRatioFile());
- // filesPrefix.setText(fields.getOutfileprefix());
- runMessages.setText(fields.getMessage());
- } else {
- newProjectCreated();
- }
- }
-
- @Override
- public void saveProjectRequested() {
- fields.setBeld4ncf(beld4Dir.getText());
- fields.setMetdep(metdepFile.getText());
- fields.setHucSelection((String) hucSel.getSelectedItem());
- fields.setNDepSelection((String) nDepSel.getSelectedItem());
- fields.setScenarioDir(scenarioDir.getText());
- if (ratioFile != null)
- fields.setRatioFile(ratioFile.getText() == null ? "" : ratioFile.getText());
- if (runMessages != null)
- fields.setMessage(runMessages.getText());
- }
-
- @Override
- public void newProjectCreated() {
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- String scenDir = domain.getScenarioDir().trim();
- scenarioDir.setText(domain.getScenarioDir());
- String year = domain.getNlcdYear().trim();
- // simYear.setValue(year);
- // filesPrefix.setText("");
- // String beld4file = fields.getBeld4ncf();
- // if ( beld4file == null || beld4file.trim().isEmpty() )
- String beld4file = scenDir + "/share_data/beld4_" + domain.getGridName() + "_" + year + ".nc";
- this.beld4Dir.setText(beld4file);
- String depmet = scenDir + "/share_data/site_weather_dep_" + year + "0101" + "_to_" + year + "1231" + ".nc";
- this.metdepFile.setText(depmet);
- nDepSel.setSelectedIndex(0);
- hucSel.setSelectedIndex(0);
-
- runMessages.setText("");
- ratioFile.setText("");
- // filesPrefix.setText("");
- try {
- simYear.setValue(NumberFormat.getNumberInstance().parse(year == null ? "" : domain.getSimYear()));
- } catch (ParseException e) {
- simYear.setValue(0);
- }
-
- // if ( fields == null ) {
- // fields = new Epic2SWATFields();
- app.getProject().addPage(fields);
- // }
- }
-
-}
+package gov.epa.festc.gui;
+
+import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.text.NumberFormat;
+import java.text.ParseException;
+import java.text.SimpleDateFormat;
+import java.util.Date;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.BoxLayout;
+import javax.swing.JButton;
+import javax.swing.JComboBox;
+import javax.swing.JFormattedTextField;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JTextField;
+import javax.swing.SpringLayout;
+import javax.swing.SwingConstants;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.proj.DomainFields;
+import gov.epa.festc.core.proj.Epic2SWATFields;
+import gov.epa.festc.util.BrowseAction;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.FileRunner;
+import gov.epa.festc.util.SpringLayoutGenerator;
+import simphony.util.messages.MessageCenter;
+
+public class Epic2SWATPanel extends UtilFieldsPanel implements PlotEventListener {
+ private static final long serialVersionUID = 4247819754945274135L;
+ private JTextField beld4Dir;
+ private JButton beld4FileBrowser;
+ private JButton ratioFileBrowser;
+ private JButton weathFileBrowser;
+
+ // private JTextField filesPrefix;
+ private MessageCenter msg;
+ private JTextField metdepFile;
+ private JTextField depFile;
+ private JTextField ratioFile;
+ private JComboBox nDepSel;
+ private JComboBox hucSel;
+ private JFormattedTextField simYear;
+
+ private FestcApplication app;
+ private Epic2SWATFields fields;
+
+ public Epic2SWATPanel(FestcApplication application) {
+ app = application;
+ msg = app.getMessageCenter();
+ fields = new Epic2SWATFields();
+ app.getProject().addPage(fields);
+ app.addPlotListener(this);
+ add(createPanel());
+ }
+
+ private JPanel createPanel() {
+ init();
+ JPanel mainPanel = new JPanel();
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
+ mainPanel.add(getNorthPanel());
+ mainPanel.add(getCenterPanel());
+ mainPanel.add(getSouthPanel());
+ mainPanel.add(messageBox());
+ return mainPanel;
+ }
+
+ private JPanel getNorthPanel() {
+ JPanel panel = new JPanel();
+ JLabel title = new JLabel(Constants.EPIC2SWAT, SwingConstants.CENTER);
+ title.setFont(new Font("Default", Font.BOLD, 20));
+
+ panel.add(title);
+ panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 20, 0));
+
+ return panel;
+ }
+
+ private JPanel getSouthPanel() {
+ JPanel panel = new JPanel();
+ JButton runDaily = new JButton(runDailyAction());
+ panel.add(runDaily);
+ JButton runNDep = new JButton(runNDepAction());
+ panel.add(runNDep);
+ JButton runWeather = new JButton(runWeatAction());
+ panel.add(runWeather);
+ JButton runSWATin = new JButton(runSWATAction());
+ panel.add(runSWATin);
+
+ panel.setBorder(BorderFactory.createEmptyBorder(30, 0, 10, 0));
+
+ return panel;
+ }
+
+ private JPanel getCenterPanel() {
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+
+ JPanel beld4DirPanel = new JPanel();
+ beld4Dir = new JTextField(40);
+ beld4Dir.setToolTipText("I.E. share_data/beld4_cmaq12km_2001.nc");
+ beld4FileBrowser = new JButton(BrowseAction.browseAction(this, app.getCurrentDir(), "BELD4 file", beld4Dir));
+ beld4DirPanel.add(beld4Dir);
+ beld4DirPanel.add(beld4FileBrowser);
+
+ JPanel weatherPanel = new JPanel();
+ metdepFile = new JTextField(40);
+ metdepFile.setToolTipText("Select Site_weather_dep* file");
+ weathFileBrowser = new JButton(BrowseAction.browseAction(this, app.getCurrentDir(), "WETDEP file", metdepFile));
+ weatherPanel.add(metdepFile);
+ weatherPanel.add(weathFileBrowser);
+
+ JPanel ratioPanel = new JPanel();
+ ratioFile = new JTextField(40);
+ ratioFile.setToolTipText("Huc8 Delivery Ratio file");
+ ratioFileBrowser = new JButton(
+ BrowseAction.browseAction(this, app.getCurrentDir(), "HUC8 Ratio file", ratioFile));
+ ratioPanel.add(ratioFile);
+ ratioPanel.add(ratioFileBrowser);
+
+ nDepSel = new JComboBox(Constants.SWAT_NDEPS);
+ nDepSel.setSelectedIndex(1);
+ nDepSel.setToolTipText("Select CMAQ deposition. ");
+ hucSel = new JComboBox(Constants.AREAS);
+ hucSel.setSelectedIndex(1);
+ hucSel.setToolTipText("Select HUC. ");
+
+ JPanel filesPrefixPanel = new JPanel();
+ // filesPrefix = new JTextField(40);
+ // filesPrefixPanel.add(filesPrefix);
+ //
+
+ // JPanel depField = new JPanel();
+ // depFile = new JTextField(40);
+ // depField.add(depFile);
+ //
+ // JPanel ratioField = new JPanel();
+ // ratioFile = new JTextField(40);
+ // ratioField.add(ratioFile);
+
+ // JPanel startDatePanel = new JPanel();
+ // NumberFormat snf = NumberFormat.getNumberInstance();
+ // snf.setGroupingUsed(false);
+ // startDate = new JFormattedTextField(snf);
+ // startDate.setColumns(40);
+ // startDatePanel.add(startDate);
+
+ JPanel simYearPanel = new JPanel();
+ NumberFormat enf = NumberFormat.getNumberInstance();
+ enf.setGroupingUsed(false);
+ simYear = new JFormattedTextField(enf);
+ simYear.setColumns(20);
+ simYearPanel.add(simYear);
+ simYear.setEditable(false);
+
+ // layout.addLabelWidgetPair("Grid Description:",
+ // getGridDescPanel(false), panel);
+ layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
+ layout.addLabelWidgetPair("BELD4 NetCDF File: ", beld4DirPanel, panel);
+ layout.addLabelWidgetPair("Met dep File:", weatherPanel, panel);
+ layout.addLabelWidgetPair("HUC8 Delivery Ratio File:", ratioPanel, panel);
+ layout.addLabelWidgetPair("Simulation Year:", simYearPanel, panel);
+
+ layout.addLabelWidgetPair("Daily Average N Deposition: ", nDepSel, panel);
+ layout.addLabelWidgetPair("Area Selection: ", hucSel, panel);
+ // layout.addLabelWidgetPair("EPIC extraction Prefix:",
+ // filesPrefixPanel, panel);
+
+ layout.makeCompactGrid(panel, 7, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+
+ return panel;
+ }
+
+ private Action runDailyAction() {
+ return new AbstractAction("EPIC") {
+ private static final long serialVersionUID = 5806383737068197305L;
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+ validateFields();
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ final String jobFile = writeEpicScript();
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir.getText(), "EPIC");
+ } else {
+ batchFile = null;
+ }
+
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile);
+ }
+ }
+ });
+ populateThread.start();
+ } catch (Exception exc) {
+ app.showMessage("Run script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private Action runNDepAction() {
+ return new AbstractAction("NDEP") {
+ private static final long serialVersionUID = 5806383737068197305L;
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+ validateFields();
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ final String jobFile = writeNDepScript();
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir.getText(), "NDEP");
+ } else {
+ batchFile = null;
+ }
+
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile);
+ }
+ }
+ });
+ populateThread.start();
+ } catch (Exception exc) {
+ app.showMessage("Run script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private Action runWeatAction() {
+ return new AbstractAction("DailyWETH") {
+ private static final long serialVersionUID = 5806383737068197305L;
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+ validateFields();
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ final String jobFile = writeWeatScript();
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir.getText(), "WETH");
+ } else {
+ batchFile = null;
+ }
+
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile);
+ }
+ }
+ });
+ populateThread.start();
+ } catch (Exception exc) {
+ app.showMessage("Run script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private Action runSWATAction() {
+ return new AbstractAction("SWAT INPUTS") {
+ private static final long serialVersionUID = 5806383737068197305L;
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+ validateFields();
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ final String jobFile = writeSWATScript();
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir.getText(), "SWAT");
+ } else {
+ batchFile = null;
+ }
+
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile);
+ }
+ }
+ });
+ populateThread.start();
+ } catch (Exception exc) {
+ app.showMessage("Run script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private void validateFields() throws Exception {
+
+ String sahome = Constants.getProperty(Constants.SA_HOME, msg);
+ if (sahome == null || sahome.trim().isEmpty() || !(new File(sahome).exists()))
+ throw new Exception("Error loading spacial allocator home:" + sahome + " doesn't exist");
+
+ String scenarioDir = this.scenarioDir.getText();
+ if (scenarioDir == null || scenarioDir.isEmpty())
+ throw new Exception("Please select scenario dir first!");
+
+ String sYear = simYear.getText();
+ if (sYear == null || sYear.trim().isEmpty())
+ throw new Exception("Simulation Year field is empty.");
+ }
+
+ // This is legacy code that has been moved to it's own method
+ protected void writeScriptFile(String file, String content) {
+
+ String mesg = "";
+
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(content);
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ // printStackTrace();
+ // g.error("Error generating EPIC script file", e);
+ app.showMessage("Write script", e.getMessage());
+ }
+
+ app.showMessage("Write script", mesg);
+ }
+
+ protected String writeBatchFile(String jobFile, String scenarioDir, String desc) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitEpic2CMAQ_" + desc + "_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
+
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+ private String writeEpicScript() throws Exception {
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+
+ String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ String scenarioDir = this.scenarioDir.getText();
+ File beld4F = new File(this.beld4Dir.getText());
+ if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
+ throw new Exception("Beld4 file is not existing!");
+
+ outMessages += "Epic base: " + baseDir + ls;
+
+ String file = scenarioDir.trim() + "/scripts";
+
+ file = file.trim() + "/epic2swat_extract_dailyEpic_" + timeStamp + ".csh";
+ // outMessages += file + ls;
+
+ StringBuilder sb = new StringBuilder();
+ sb.append(getEpicScriptHeader());
+ String ls = "\n";
+
+ sb.append("#" + ls);
+ sb.append("# Set up runtime environment" + ls);
+ sb.append("#" + ls);
+
+ String rModules = Constants.getProperty(Constants.QUEUE_R_MODULE, msg);
+ sb.append("module load " + rModules + ls);
+
+ sb.append("setenv EPIC_DIR " + baseDir + ls);
+ sb.append("setenv SCEN_DIR " + scenarioDir + ls);
+ sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls);
+ sb.append("setenv SIM_YEAR " + simYear.getText() + ls + ls);
+
+ sb.append("# Get site infomation" + ls);
+ sb.append("setenv SITE_FILE ${SHARE_DIR}/EPICSites_Info.csv" + ls + ls);
+ sb.append("# Define BELD4 input file, get crop fractions " + ls);
+ sb.append("setenv DOMAIN_BELD4_NETCDF " + beld4Dir.getText() + ls);
+ sb.append("setenv REGION " + hucSel.getSelectedItem() + ls + ls);
+
+ sb.append("# Process multiple years" + ls);
+ sb.append("set SIM_YEAR=\"$SCEN_DIR/output4CMAQ/app/[1-2][0-9][0-9][0-9]\"" + ls);
+ sb.append("foreach MULTI_YEAR_DIR ($SIM_YEAR)" + ls);
+ sb.append(" set MULTI_YEAR=`basename $MULTI_YEAR_DIR`" + ls);
+ sb.append(" setenv SIM_YEAR $MULTI_YEAR" + ls + ls);
+
+ sb.append("# EPIC input location" + ls);
+ sb.append(" setenv DAY_DIR $SCEN_DIR/output4CMAQ/app/${MULTI_YEAR}/daily" + ls + ls);
+ //sb.append("# SWAT output location" + ls);
+ sb.append(" setenv OUTDIR $SCEN_DIR/output4SWAT/${MULTI_YEAR}/dailyEPIC" + ls);
+ sb.append(" if ( ! -e $OUTDIR/county ) mkdir -p $OUTDIR/county" + ls);
+ sb.append(" if ( ! -e $OUTDIR/state ) mkdir -p $OUTDIR/state" + ls);
+ sb.append(" if ( ! -e $OUTDIR/domain ) mkdir -p $OUTDIR/domain" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC8 ) mkdir -p $OUTDIR/HUC8" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC6 ) mkdir -p $OUTDIR/HUC6" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC2 ) mkdir -p $OUTDIR/HUC2" + ls + ls);
+
+ // sb.append("setenv OUTFILE_PREFIX $OUTDIR/" + filesPrefix.getText() +
+ // ls + ls);
+
+
+ // sb.append("cd $EPIC_DIR/util/swat/" + ls );
+ sb.append(" echo 'Run EPIC daily summary for swat: ' $MULTI_YEAR_DIR" + ls);
+
+ sb.append(" R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/swat/epic2swat_extract_dailyEPIC.R "
+ + "${SCEN_DIR}/scripts/epic2swat_extract_dailyEPIC_${MULTI_YEAR}.log" + ls);
+ sb.append("end" + ls + ls);
+
+ String mesg = "";
+ try {
+ File script = new File(file);
+ Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ mesg += "Created a script file: " + file + "\n";
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
+ app.showMessage("Write script", mesg);
+ return file;
+ }
+
+ private String writeNDepScript() throws Exception {
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+
+ String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ String scenarioDir = this.scenarioDir.getText();
+
+ String ndepSelection = (String) nDepSel.getSelectedItem();
+ String ndepType = ndepSelection;
+ if (ndepSelection.contains("2002"))
+ ndepType = "dailyNDep_2004";
+ else if (ndepSelection.contains("2010"))
+ ndepType = "dailyNDep_2008";
+
+ File beld4F = new File(this.beld4Dir.getText());
+ if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
+ throw new Exception("Beld4 file is not existing!");
+
+ outMessages += "Epic base: " + baseDir + ls;
+
+ String file = scenarioDir.trim() + "/scripts";
+ // String year = domain.getSimYear();
+
+ file = file.trim() + "/epic2swat_extract_NDEP_" + timeStamp + ".csh";
+ // outMessages += file + ls;
+
+ StringBuilder sb = new StringBuilder();
+ sb.append(getNdepScriptHeader());
+ String ls = "\n";
+
+ sb.append("#" + ls);
+ sb.append("# Set up runtime environment" + ls);
+ sb.append("#" + ls);
+
+ String rModules = Constants.getProperty(Constants.QUEUE_R_MODULE, msg);
+ sb.append("module load " + rModules + ls);
+
+ sb.append("setenv EPIC_DIR " + baseDir + ls);
+ sb.append("setenv SCEN_DIR " + scenarioDir + ls);
+ sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls + ls);
+ sb.append("# Get site infomation" + ls);
+ sb.append("setenv SITE_FILE ${SHARE_DIR}/allSites_Info.csv" + ls + ls);
+
+ sb.append("# Define BELD4 input file" + ls);
+ sb.append("setenv DOMAIN_BELD4_NETCDF " + beld4Dir.getText() + ls + ls);
+
+ sb.append("# Location of deposition files " + ls);
+ sb.append("setenv NDEP_TYPE " + ndepType + ls);
+ sb.append("setenv NDEP_FILE " + metdepFile.getText() + ls);
+
+ sb.append("# Process multiple years" + ls);
+ sb.append("set SIM_YEAR=\"$SCEN_DIR/output4CMAQ/app/[1-2][0-9][0-9][0-9]\"" + ls);
+ sb.append("foreach MULTI_YEAR_DIR ($SIM_YEAR)" + ls);
+ sb.append(" set MULTI_YEAR=`basename $MULTI_YEAR_DIR`" + ls);
+ sb.append(" setenv SIM_YEAR $MULTI_YEAR" + ls + ls);
+
+ sb.append("# output location" + ls);
+ sb.append(" setenv OUTDIR $SCEN_DIR/output4SWAT/${MULTI_YEAR}/NDEP/" + ndepType + ls);
+ sb.append(" if ( ! -e $OUTDIR) mkdir -p $OUTDIR" + ls);
+ sb.append(" if ( ! -e $OUTDIR/county ) mkdir -p $OUTDIR/county" + ls);
+ sb.append(" if ( ! -e $OUTDIR/state ) mkdir -p $OUTDIR/state" + ls);
+ sb.append(" if ( ! -e $OUTDIR/domain ) mkdir -p $OUTDIR/domain" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC8 ) mkdir -p $OUTDIR/HUC8" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC6 ) mkdir -p $OUTDIR/HUC6" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC2 ) mkdir -p $OUTDIR/HUC2" + ls + ls);
+
+ // sb.append("setenv REGION " + hucSel.getSelectedItem() + ls);
+ // sb.append("cd $EPIC_DIR/util/swat/" + ls );
+ sb.append(" echo 'Extract daily depositon from yearly CMAQ or 2004/2008 averaged ndep: ' $MULTI_YEAR_DIR" + ls);
+ sb.append(" R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/swat/epic2swat_extract_daily_ndepCMAQ.R "
+ + "${SCEN_DIR}/scripts/epic2swat_extract_daily_ndepCMAQ_${MULTI_YEAR}.log" + ls);
+ sb.append("end" + ls + ls);
+
+ String mesg = "";
+ try {
+ File script = new File(file);
+ Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ mesg += "Created a script file: " + file + "\n";
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
+ app.showMessage("Write script", mesg);
+ return file;
+ }
+
+ private String writeSWATScript() throws Exception {
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+
+ String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ String scenarioDir = this.scenarioDir.getText();
+
+ String ndepSelection = (String) nDepSel.getSelectedItem();
+ String ndepType = ndepSelection;
+ if (ndepSelection.contains("2002"))
+ ndepType = "dailyNDep_2004";
+ else if (ndepSelection.contains("2010"))
+ ndepType = "dailyNDep_2008";
+
+ File ratioF = new File(this.ratioFile.getText());
+ if (ratioF == null || ratioF.isDirectory() || !ratioF.exists())
+ throw new Exception("Ratio file is not existing!");
+ File beld4F = new File(this.beld4Dir.getText());
+ if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
+ throw new Exception("Beld4 file is not existing!");
+
+ outMessages += "Epic base: " + baseDir + ls;
+
+ String file = scenarioDir.trim() + "/scripts";
+ // String year = domain.getSimYear();
+
+ file = file.trim() + "/extract_swatInputs_" + timeStamp + ".csh";
+ // outMessages += file + ls;
+
+ StringBuilder sb = new StringBuilder();
+ sb.append(getSWATScriptHeader());
+ String ls = "\n";
+
+ sb.append("#" + ls);
+ sb.append("# Set up runtime environment" + ls);
+ sb.append("#" + ls);
+
+ String rModules = Constants.getProperty(Constants.QUEUE_R_MODULE, msg);
+ sb.append("module load " + rModules + ls);
+
+ sb.append("setenv EPIC_DIR " + baseDir + ls);
+ sb.append("setenv SCEN_DIR " + scenarioDir + ls);
+ sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls + ls);
+ sb.append("setenv NDEP_TYPE " + ndepType + ls);
+ sb.append("setenv SIM_YEAR " + simYear.getText() + ls + ls);
+ sb.append("setenv RUN_dailyEPIC YES" + ls);
+ sb.append("setenv RUN_MET YES" + ls);
+ sb.append("setenv RUN_NDEP YES" + ls);
+
+ sb.append("# Get site infomation" + ls);
+ sb.append("setenv SITE_FILE ${SHARE_DIR}/AllSites_Info.csv" + ls + ls);
+ sb.append("# Define ratio input file" + ls);
+ sb.append("setenv RATIO_FILE " + ratioF + ls + ls);
+
+ sb.append("# Process multiple years" + ls);
+ sb.append("set SIM_YEAR=\"$SCEN_DIR/output4CMAQ/app/[1-2][0-9][0-9][0-9]\"" + ls);
+ sb.append("foreach MULTI_YEAR_DIR ($SIM_YEAR)" + ls);
+ sb.append(" set MULTI_YEAR=`basename $MULTI_YEAR_DIR`" + ls);
+ sb.append(" setenv SIM_YEAR $MULTI_YEAR" + ls + ls);
+
+ sb.append("# output location" + ls);
+ sb.append(" setenv OUTDIR $SCEN_DIR/output4SWAT/$MULTI_YEAR" + ls);
+ sb.append(" setenv SWAT_OUTDIR $SCEN_DIR/output4SWAT/${MULTI_YEAR}/swat_inputs" + ls);
+ sb.append(" if ( ! -e $OUTDIR) mkdir -p $OUTDIR" + ls);
+ sb.append(" if ( ! -e $SWAT_OUTDIR ) mkdir -p $SWAT_OUTDIR" + ls);
+ sb.append(" if ( ! -e $SWAT_OUTDIR/dailydep ) mkdir -p $SWAT_OUTDIR/dailydep" + ls);
+ sb.append(" if ( ! -e $SWAT_OUTDIR/dailyweath ) mkdir -p $SWAT_OUTDIR/dailyweath" + ls);
+ sb.append(" if ( ! -e $SWAT_OUTDIR/EPICinputPoint ) mkdir -p $SWAT_OUTDIR/EPICinputPoint" + ls);
+
+ sb.append(" echo 'Extract swat inputs: ' $MULTI_YEAR_DIR" + ls);
+ sb.append(" R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/swat/extract_swatInputs.R "
+ + "${SCEN_DIR}/scripts/extract_swatInputs_" + ndepType + "_${MULTI_YEAR}.log" + ls);
+ sb.append("end" + ls + ls);
+
+ String mesg = "";
+ try {
+ File script = new File(file);
+ Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ mesg += "Created a script file: " + file + "\n";
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
+ app.showMessage("Write script", mesg);
+ return file;
+ }
+
+ private String writeWeatScript() throws Exception {
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+
+ String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ String scenarioDir = this.scenarioDir.getText();
+ File beld4F = new File(this.beld4Dir.getText());
+ if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
+ throw new Exception("Beld4 file is not existing!");
+
+ String ndepSelection = (String) nDepSel.getSelectedItem();
+ String ndepType = ndepSelection;
+ if (ndepSelection.contains("2002"))
+ ndepType = "dailyNDep_2004";
+ else if (ndepSelection.contains("2010"))
+ ndepType = "dailyNDep_2008";
+
+ outMessages += "Epic base: " + baseDir + ls;
+
+ String file = scenarioDir.trim() + "/scripts";
+ // String year = domain.getSimYear();
+
+ file = file.trim() + "/epic2swat_daily_metCMAQ_" + timeStamp + ".csh";
+ // outMessages += file + ls;
+
+ StringBuilder sb = new StringBuilder();
+ sb.append(getWeatScriptHeader());
+ String ls = "\n";
+
+ sb.append("#" + ls);
+ sb.append("# Set up runtime environment" + ls);
+ sb.append("#" + ls);
+
+ String rModules = Constants.getProperty(Constants.QUEUE_R_MODULE, msg);
+ sb.append("module load " + rModules + ls);
+
+ sb.append("setenv EPIC_DIR " + baseDir + ls);
+ sb.append("setenv SCEN_DIR " + scenarioDir + ls);
+ sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls + ls);
+ sb.append("# Get site infomation" + ls);
+ sb.append("setenv SITE_FILE ${SHARE_DIR}/allSites_Info.csv" + ls + ls);
+ sb.append("# Define BELD4 input file, get crop fractions " + ls);
+ sb.append("setenv DOMAIN_BELD4_NETCDF " + beld4Dir.getText() + ls + ls);
+
+ sb.append("# met yearly file location" + ls);
+ sb.append("setenv NDEP_TYPE " + ndepType + ls);
+ sb.append("setenv DEPMET_FILE " + metdepFile.getText() + ls + ls);
+ sb.append("setenv REGION " + hucSel.getSelectedItem() + ls + ls);
+
+ sb.append("# Process multiple years" + ls);
+ sb.append("set SIM_YEAR=\"$SCEN_DIR/output4CMAQ/app/[1-2][0-9][0-9][0-9]\"" + ls);
+ sb.append("foreach MULTI_YEAR_DIR ($SIM_YEAR)" + ls);
+ sb.append(" set MULTI_YEAR=`basename $MULTI_YEAR_DIR`" + ls);
+ sb.append(" setenv SIM_YEAR $MULTI_YEAR" + ls + ls);
+
+ sb.append("# output location" + ls);
+ sb.append(" setenv OUTDIR $SCEN_DIR/output4SWAT/${MULTI_YEAR}/dailyWETH/" + ndepType + ls);
+ sb.append(" if ( ! -e $OUTDIR) mkdir -p $OUTDIR" + ls);
+ sb.append(" if ( ! -e $OUTDIR/county ) mkdir -p $OUTDIR/county" + ls);
+ sb.append(" if ( ! -e $OUTDIR/state ) mkdir -p $OUTDIR/state" + ls);
+ sb.append(" if ( ! -e $OUTDIR/domain ) mkdir -p $OUTDIR/domain" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC8 ) mkdir -p $OUTDIR/HUC8" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC6 ) mkdir -p $OUTDIR/HUC6" + ls);
+ sb.append(" if ( ! -e $OUTDIR/HUC2 ) mkdir -p $OUTDIR/HUC2" + ls + ls);
+
+ // sb.append("cd $EPIC_DIR/util/swat/" + ls );
+ sb.append(" echo 'Extract daily met/dep for SWAT from ' $MULTI_YEAR_DIR" + ls);
+ sb.append(" R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/swat/epic2swat_extract_daily_metCMAQ.R "
+ + "${SCEN_DIR}/scripts/epic2swat_extract_daily_metCMAQ_${MULTI_YEAR}.log" + ls + ls);
+ sb.append("end" + ls + ls);
+
+ String mesg = "";
+ try {
+ File script = new File(file);
+ Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ mesg += "Created a script file: " + file + "\n";
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
+ app.showMessage("Write script", mesg);
+ return file;
+ }
+
+ private String getEpicScriptHeader() {
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: Prepare runoff inputs for SWAT by extracting " + ls);
+ sb.append("# EPIC daily output files output4CMAQ/app/daily/*NCD " + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("# Developed by: UNC Institute for the Environment" + ls);
+ sb.append("# Date: 10/30/2018" + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: $EPIC_DIR/util/swat/epic2swat_extract_daily_epic.R" + ls);
+ sb.append("#" + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ return sb.toString();
+ }
+
+ private String getNdepScriptHeader() {
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: Prepare N Deposition inputs for SWAT by summarizing met data, " + ls);
+ sb.append("# netcdf weather data under ${SHAREDIR}/ " + ls);
+ sb.append("# $COMMON_data/EPIC_model/dailyNDep_200? " + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("# Developed by: UNC Institute for the Environment" + ls);
+ sb.append("# Date: 10/30/2017" + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: $EPIC_DIR/util/swat/epic2swat_extract_daily_ndep.R" + ls);
+ sb.append("#" + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ return sb.toString();
+ }
+
+ private String getWeatScriptHeader() {
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: Prepare N Deposition and weather inputs for SWAT by summarizing " + ls);
+ sb.append("# netcdf weather data under ${SHAREDIR}/ " + ls);
+ sb.append("# $COMMON_data/EPIC_model/dailyNDep_200?/ " + ls);
+ sb.append("#" + ls);
+ sb.append("#" + ls);
+ sb.append("# Developed by: UNC Institute for the Environment" + ls);
+ sb.append("# Date: 10/30/2017" + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: $EPIC_DIR/util/swat/epic2swat_daily_depWETHnc.R" + ls);
+ sb.append("#" + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ return sb.toString();
+ }
+
+ private String getSWATScriptHeader() {
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: Prepare swat inputs: dailyEPIC, NDEP, and weather" + ls);
+ sb.append("#" + ls);
+ sb.append("# Developed by: UNC Institute for the Environment" + ls);
+ sb.append("# Date: 10/30/2017" + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: $EPIC_DIR/util/swat/extract_swatInputs.R" + ls);
+ sb.append("#" + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ return sb.toString();
+ }
+
+ private void runScript(final String file) {
+ String log = file + ".log";
+ outMessages += "Script file: " + file + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+ FileRunner.runScript(file, log, msg);
+ }
+
+ private void runBatchScript(final String batchFile, final String jobFile) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qEpic2Swat = Constants.getProperty(Constants.QUEUE_EPIC2SWAT, msg);
+
+ File script = new File(batchFile.replaceAll("\\\\", "\\\\\\\\"));
+
+ sb.append(qcmd + " " + qEpic2Swat + " -o " + log + " " + script.getAbsolutePath());
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
+ @Override
+ public void projectLoaded() {
+ fields = (Epic2SWATFields) app.getProject().getPage(fields.getName());
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ if (fields != null) {
+ fields = (Epic2SWATFields) app.getProject().getPage(fields.getName());
+ String scenloc = domain.getScenarioDir();
+ if (scenloc != null && scenloc.trim().length() > 0)
+ this.scenarioDir.setText(scenloc);
+ else
+ this.scenarioDir.setText(fields.getScenarioDir());
+ //
+ try {
+ simYear.setValue(
+ NumberFormat.getNumberInstance().parse(domain.getSimYear() == null ? "" : domain.getSimYear()));
+
+ } catch (ParseException e) {
+ simYear.setValue(0);
+ }
+ String year = simYear.getText();
+ if (fields.getMetdep() == null) {
+ String depmet = domain.getScenarioDir().trim() + "/share_data/site_weather_dep_" + year + "0101"
+ + "_to_" + year + "1231" + ".nc";
+ this.metdepFile.setText(depmet);
+ } else
+ this.metdepFile.setText(fields.getMetdep());
+ beld4Dir.setText(fields.getBeld4ncf());
+ hucSel.setSelectedItem(fields.getHucSelection());
+ nDepSel.setSelectedItem(fields.getNDepSelection());
+ ratioFile.setText(fields.getRatioFile());
+ // filesPrefix.setText(fields.getOutfileprefix());
+ runMessages.setText(fields.getMessage());
+ } else {
+ newProjectCreated();
+ }
+ }
+
+ @Override
+ public void saveProjectRequested() {
+ fields.setBeld4ncf(beld4Dir.getText());
+ fields.setMetdep(metdepFile.getText());
+ fields.setHucSelection((String) hucSel.getSelectedItem());
+ fields.setNDepSelection((String) nDepSel.getSelectedItem());
+ fields.setScenarioDir(scenarioDir.getText());
+ if (ratioFile != null)
+ fields.setRatioFile(ratioFile.getText() == null ? "" : ratioFile.getText());
+ if (runMessages != null)
+ fields.setMessage(runMessages.getText());
+ }
+
+ @Override
+ public void newProjectCreated() {
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ String scenDir = domain.getScenarioDir().trim();
+ scenarioDir.setText(domain.getScenarioDir());
+ String year = domain.getNlcdYear().trim();
+ // simYear.setValue(year);
+ // filesPrefix.setText("");
+ // String beld4file = fields.getBeld4ncf();
+ // if ( beld4file == null || beld4file.trim().isEmpty() )
+ String beld4file = scenDir + "/share_data/beld4_" + domain.getGridName() + "_" + year + ".nc";
+ this.beld4Dir.setText(beld4file);
+ String depmet = scenDir + "/share_data/site_weather_dep_" + year + "0101" + "_to_" + year + "1231" + ".nc";
+ this.metdepFile.setText(depmet);
+ nDepSel.setSelectedIndex(0);
+ hucSel.setSelectedIndex(0);
+
+ runMessages.setText("");
+ ratioFile.setText("");
+ // filesPrefix.setText("");
+ try {
+ simYear.setValue(NumberFormat.getNumberInstance().parse(year == null ? "" : domain.getSimYear()));
+ } catch (ParseException e) {
+ simYear.setValue(0);
+ }
+
+ // if ( fields == null ) {
+ // fields = new Epic2SWATFields();
+ app.getProject().addPage(fields);
+ // }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/EpicRunAppPanel.java b/festc_core/src/gov/epa/festc/gui/EpicRunAppPanel.java
index b2c409a..02bd125 100644
--- a/festc_core/src/gov/epa/festc/gui/EpicRunAppPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/EpicRunAppPanel.java
@@ -41,16 +41,19 @@ public class EpicRunAppPanel extends UtilFieldsPanel implements PlotEventListene
//private JComboBox comboCrops;
private JTextField simYear;
+ private JTextField simEndYear;
private MessageCenter msg;
String baseDir = null;
+ String epicVer = null;
private EpicAppFields fields;
//private DomainFields domain;
private JComboBox nDepSel;
private JComboBox runTiledrain;
+ private JComboBox outputFormat;
private JTextField co2Factor;
public EpicRunAppPanel(FestcApplication application) {
@@ -59,6 +62,7 @@ public EpicRunAppPanel(FestcApplication application) {
app.getProject().addPage(fields);
msg = app.getMessageCenter();
baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ epicVer = Constants.getProperty(Constants.EPIC_VER, msg).trim();
app.addPlotListener(this);
add(createPanel());
}
@@ -108,15 +112,21 @@ private JPanel getCenterPanel() {
runTiledrain = new JComboBox(new String[] {"YES", "NO"});
runTiledrain.setSelectedIndex(1);
+
+ outputFormat = new JComboBox(new String[] {"Text & NetCDF", "NetCDF only", "Text only"});
+ outputFormat.setSelectedIndex(2);
this.simYear = new JTextField(20);
+ this.simEndYear = new JTextField(20);
layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDir, panel);
layout.addLabelWidgetPair("Simulation Year: ", simYear, panel);
+ layout.addLabelWidgetPair("Simulation End Year: ", simEndYear, panel);
layout.addLabelWidgetPair("CO2 Level (ppm):",co2Factor, panel);
layout.addLabelWidgetPair("Daily Average N Deposition: ", nDepSel, panel);
layout.addLabelWidgetPair("Run Tiledrain : ", runTiledrain, panel);
+ layout.addLabelWidgetPair("Output Format : ", outputFormat, panel);
- layout.makeCompactGrid(panel, 5,2, // number of rows and cols
+ layout.makeCompactGrid(panel, 7,2, // number of rows and cols
10, 10, // initial X and Y
5, 5); // x and y pading
@@ -188,6 +198,16 @@ private void generateRunScript() throws Exception {
throw new Exception( "Simulation year is not an integer!");
}
+ String simEndY = this.simEndYear.getText();
+ if (simEndY == null || simEndY.isEmpty())
+ throw new Exception( "Please select simulation end year. ");
+
+ try {
+ Integer.parseInt(simEndY);
+ }catch(NumberFormatException e) {
+ throw new Exception( "Simulation end year is not an integer!");
+ }
+
String ndepValue = (String) this.nDepSel.getSelectedItem();
if ( ndepValue == null || ndepValue.isEmpty())
throw new Exception( "Deposition dir is empty, please specify it!");
@@ -215,18 +235,34 @@ private void generateRunScript() throws Exception {
outMessages += "Epic base: " + baseDir + ls;
outMessages += "Scen directory: " + scenarioDir + ls;
- final String file = writeRunScript(baseDir, scenarioDir, seCropsString, cropIDs,
- simY, ndepValue);
+ final String jobFile = writeRunScript(baseDir, scenarioDir, seCropsString, cropIDs,
+ simY, simEndY, ndepValue);
+
+ String cropNums = getChosenCropNums();
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir);
+ } else {
+ batchFile = null;
+ }
+
Thread populateThread = new Thread(new Runnable() {
public void run() {
- runScript(file);
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile, cropNums);
+ }
}
});
populateThread.start();
}
protected String writeRunScript( String baseDir, String scenarioDir,
- String cropNames, String cropIDs, String simY, String ndepValue) throws Exception {
+ String cropNames, String cropIDs, String simY, String simEndY, String ndepValue) throws Exception {
+
Date now = new Date(); // java.util.Date, NOT java.sql.Date or java.sql.Timestamp!
String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
@@ -235,18 +271,41 @@ protected String writeRunScript( String baseDir, String scenarioDir,
file += System.getProperty("file.separator");
file += "runEpicApp_" + timeStamp + ".csh";
+ int numY = Integer.parseInt(simEndY) - Integer.parseInt(simY) + 2;
+// boolean multiYear = numY>2;
+ String simNY = Integer.toString(numY);
+
StringBuilder sb = new StringBuilder();
- sb.append(getScirptHeader());
- sb.append(getEnvironmentDef(baseDir, scenarioDir, simY,ndepValue));
- sb.append(getRunDef(cropNames, cropIDs));
+ String scriptContent = null;
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ if (qcmd == null || qcmd.trim().isEmpty()){
+ //no batch system
+ sb.append(getScirptHeader());
+ sb.append(getEnvironmentDef(baseDir, scenarioDir, simY, simEndY, simNY, ndepValue));
+ sb.append(getRunDef(cropNames, cropIDs));
+ scriptContent = sb.toString();
+ } else {
+ //assume batch system that supports job arrays (SLURM, PBS, LSF, etc)
+ //create job array script
+ scriptContent = createArrayTaskScript(baseDir, scenarioDir, simY, simEndY, simNY, ndepValue,
+ cropNames, cropIDs);
+ }
- String mesg = "";
+ // create submit script
+ writeScriptFile(file, scriptContent);
+
+ return file;
+ }
+
+ //This is legacy code that has been moved to it's own method
+ protected void writeScriptFile( String file, String content){
+ String mesg = "";
try {
File script = new File(file);
BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
+ out.write(content);
out.close();
mesg += "Created a script file: " + file + "\n";
@@ -257,12 +316,173 @@ protected String writeRunScript( String baseDir, String scenarioDir,
} catch (IOException e) {
//printStackTrace();
//g.error("Error generating EPIC script file", e);
- throw new Exception(e.getMessage());
+// throw new Exception(e.getMessage());
+ app.showMessage("Write script", e.getMessage());
}
app.showMessage("Write script", mesg);
-
- return file;
+ }
+
+ protected String writeBatchFile(String jobFile, String scenarioDir) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitEpicApp" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
+
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+ // returns comma separated list of chosen crop numbers to run
+ private String getChosenCropNums() throws Exception{
+ String[] seCrops = cropSelectionPanel.getSelectedCrops();
+ if ( seCrops == null || seCrops.length == 0)
+ throw new Exception( "Please select crop(s) first!");
+ String crop = null;
+ String cropIDs = "";
+ for (int i=0; i0 )
- this.scenarioDir.setText(scenloc);
- else
- this.scenarioDir.setText(fields.getScenarioDir());
- runMessages.setText(fields.getMessage());
- nDepSel.setSelectedItem(fields.getNDepDir());
- co2Factor.setText(fields.getCO2Fac()==null? "380.00":fields.getCO2Fac());
- runTiledrain.setSelectedItem(fields.getRunTiledrain()==null?"NO":fields.getRunTiledrain());
- }else{
- newProjectCreated();
- }
-
- }
-
- public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( runMessages != null ) fields.setMessage(runMessages.getText());
- if ( nDepSel != null ) fields.setNDepDir( (String) nDepSel.getSelectedItem());
- if ( co2Factor != null) fields.setCO2Fac(co2Factor.getText());
- if ( runTiledrain != null ) fields.setRunTiledrain((String) runTiledrain.getSelectedItem());
- if ( runMessages != null ) fields.setMessage(runMessages.getText().trim());
- }
-
- @Override
- public void newProjectCreated() {
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- scenarioDir.setText(domain.getScenarioDir());
- nDepSel.setSelectedIndex(1);
- runMessages.setText("");
- co2Factor.setText("380.00");
- runTiledrain.setSelectedIndex(1);
- if ( fields == null ) {
- fields = new EpicSpinupFields();
- app.getProject().addPage(fields);
- }
- }
-
-}
+package gov.epa.festc.gui;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.proj.DomainFields;
+import gov.epa.festc.core.proj.EpicSpinupFields;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.FileRunner;
+import gov.epa.festc.util.SpringLayoutGenerator;
+
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.text.SimpleDateFormat;
+import java.util.Date;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.BoxLayout;
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JComboBox;
+import javax.swing.JFileChooser;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JTextField;
+import javax.swing.SpringLayout;
+import javax.swing.SwingConstants;
+
+import simphony.util.messages.MessageCenter;
+
+public class EpicSpinupPanel extends UtilFieldsPanel implements PlotEventListener {
+
+ private static final long serialVersionUID = -625272283986456313L;
+ private JTextField scenarioDir;
+ private FestcApplication app;
+
+ private CropSelectionPanel cropSelectionPanel;
+
+ private MessageCenter msg;
+
+ private String baseDir = null;
+ private String epicVer = null;
+
+ private EpicSpinupFields fields;
+ //private DomainFields domain;
+
+ private JComboBox nDepSel;
+ private JComboBox runTiledrain;
+ private JComboBox outputFormat;
+ private JTextField co2Factor;
+
+ public EpicSpinupPanel(FestcApplication application) {
+ app = application;
+ fields = new EpicSpinupFields();
+ app.getProject().addPage(fields);
+ msg = app.getMessageCenter();
+ baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ epicVer = Constants.getProperty(Constants.EPIC_VER, msg).trim();
+ app.addPlotListener(this);
+ add(createPanel());
+ }
+
+ public void setMessageCenter(MessageCenter msgCtr) {
+ msg = msgCtr;
+ }
+
+ private JPanel createPanel() {
+ JPanel mainPanel = new JPanel();
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
+ mainPanel.add(getNorthPanel());
+ mainPanel.add(getCenterPanel());
+
+ mainPanel.add(cropsPanel());
+ mainPanel.add(messageBox());
+ return mainPanel;
+ }
+
+ private JPanel getNorthPanel() {
+ JPanel panel = new JPanel();
+ JLabel title = new JLabel(Constants.EPIC_SPINUP, SwingConstants.CENTER);
+ title.setFont(new Font("Default", Font.BOLD, 20));
+
+ panel.add(title);
+ panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 10, 0));
+
+ return panel;
+ }
+
+ private JPanel getCenterPanel() {
+ //JPanel centerPanel = new JPanel();
+
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+
+ this.scenarioDir = new JTextField(40);
+
+ nDepSel = new JComboBox(Constants.SU_NDEPS);
+ nDepSel.setSelectedIndex(2);
+ nDepSel.setToolTipText("RFN0: get NDep value from EPICCONT.DAT. ");
+
+ co2Factor = new JTextField(20);
+ //co2Factor.setToolTipText("Default value is 413.00");
+
+ runTiledrain = new JComboBox(new String[] {"YES", "NO"});
+ runTiledrain.setSelectedIndex(1);
+
+ outputFormat = new JComboBox(new String[] {"Text & NetCDF", "NetCDF only", "Text only"});
+ outputFormat.setSelectedIndex(2);
+
+ layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDir, panel);
+ layout.addLabelWidgetPair("CO2 Level (ppm): ", co2Factor, panel);
+ layout.addLabelWidgetPair("Daily Average N Deposition: ", nDepSel, panel);
+ layout.addLabelWidgetPair("Run Tiledrain : ", runTiledrain, panel);
+ layout.addLabelWidgetPair("Output Format : ", outputFormat, panel);
+ layout.makeCompactGrid(panel, 5, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+
+ return panel;
+ }
+
+
+ private JPanel cropsPanel(){
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+ JPanel buttonPanel = new JPanel();
+ JButton btn = new JButton(runAction());
+ btn.setPreferredSize(new Dimension(100,50));
+ buttonPanel.add(btn);
+ buttonPanel.setBorder(BorderFactory.createEmptyBorder(70, 30, 70, 30));
+
+ this.cropSelectionPanel = new CropSelectionPanel(app);
+ layout.addWidgetPair(cropSelectionPanel, buttonPanel, panel);
+ layout.makeCompactGrid(panel, 1, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+ return panel;
+ }
+
+
+ private Action runAction() {
+ return new AbstractAction("Run") {
+ private static final long serialVersionUID = 5558465823154735475L;
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+
+ generateRunScript();
+
+ } catch (Exception exc) {
+ //msg.error("ERROR", exc);
+ app.showMessage("Run script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private void generateRunScript() throws Exception {
+
+ String baseDir = this.baseDir;
+ if ( baseDir == null || baseDir.isEmpty())
+ throw new Exception( "Base dir is empty, please specify in the configuration file!");
+
+ String scenarioDir = this.scenarioDir.getText();
+ if ( scenarioDir == null || scenarioDir.isEmpty())
+ throw new Exception( "Please select scenario dir first!");
+
+ String co2Fac = co2Factor.getText();
+ if (co2Fac == null || co2Fac.isEmpty())
+ throw new Exception("co2 Level is not specified!");
+
+ String ndepValue = (String) this.nDepSel.getSelectedItem();
+ if ( ndepValue == null || ndepValue.isEmpty())
+ throw new Exception( "Deposition dir is empty, please specify it!");
+
+ try {
+ Float.parseFloat(co2Fac);
+ }catch(NumberFormatException e) {
+ throw new Exception("CO2 Level is not a number!");
+ }
+
+ String seCropsString = cropSelectionPanel.selectedItemTostring();
+ String[] seCrops = cropSelectionPanel.getSelectedCrops();
+ if ( seCrops == null || seCrops.length == 0)
+ throw new Exception( "Please select crop(s) first!");
+
+
+ String crop = null;
+ String cropIDs = "(";
+ for (int i=0; i0 )
+ this.scenarioDir.setText(scenloc);
+ else
+ this.scenarioDir.setText(fields.getScenarioDir());
+ runMessages.setText(fields.getMessage());
+ nDepSel.setSelectedItem(fields.getNDepDir());
+ co2Factor.setText(fields.getCO2Fac()==null? "380.00":fields.getCO2Fac());
+ runTiledrain.setSelectedItem(fields.getRunTiledrain()==null?"NO":fields.getRunTiledrain());
+ }else{
+ newProjectCreated();
+ }
+
+ }
+
+ public void saveProjectRequested() {
+ if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
+ if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
+ if ( runMessages != null ) fields.setMessage(runMessages.getText());
+ if ( nDepSel != null ) fields.setNDepDir( (String) nDepSel.getSelectedItem());
+ if ( co2Factor != null) fields.setCO2Fac(co2Factor.getText());
+ if ( runTiledrain != null ) fields.setRunTiledrain((String) runTiledrain.getSelectedItem());
+ if ( runMessages != null ) fields.setMessage(runMessages.getText().trim());
+ }
+
+ @Override
+ public void newProjectCreated() {
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ scenarioDir.setText(domain.getScenarioDir());
+ nDepSel.setSelectedIndex(1);
+ runMessages.setText("");
+ co2Factor.setText("380.00");
+ runTiledrain.setSelectedIndex(1);
+ if ( fields == null ) {
+ fields = new EpicSpinupFields();
+ app.getProject().addPage(fields);
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel.java b/festc_core/src/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel.java
index e967444..03ed5f0 100644
--- a/festc_core/src/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/EpicYearlyAverage2CMAQPanel.java
@@ -44,14 +44,14 @@ public class EpicYearlyAverage2CMAQPanel extends UtilFieldsPanel implements Plot
private FestcApplication app;
private static final String indent = " ";
private EpicYearlyAverage2CMAQFields fields;
-
+
private JRadioButton applicationBtn, spinupBtn;
private boolean spinup = false;
private JTextField beld4Dir;
private JButton beld4DirBrowser;
private String ls = "\n";
- //private JCheckBox swatDayBox;
-
+ // private JCheckBox swatDayBox;
+
public EpicYearlyAverage2CMAQPanel(FestcApplication festcApp) {
app = festcApp;
msg = app.getMessageCenter();
@@ -60,7 +60,7 @@ public EpicYearlyAverage2CMAQPanel(FestcApplication festcApp) {
app.addPlotListener(this);
add(createPanel());
}
-
+
private JPanel createPanel() {
init();
JPanel mainPanel = new JPanel();
@@ -71,10 +71,11 @@ private JPanel createPanel() {
mainPanel.add(messageBox());
return mainPanel;
}
-
+
private JPanel getNorthPanel() {
JPanel panel = new JPanel();
- JLabel title = new JLabel(Constants.EPIC_YEAR, // Yearly Average for CMAQ",
+ JLabel title = new JLabel(Constants.EPIC_YEAR, // Yearly Average for
+ // CMAQ",
SwingConstants.CENTER);
title.setFont(new Font("Default", Font.BOLD, 20));
@@ -83,43 +84,43 @@ private JPanel getNorthPanel() {
return panel;
}
-
+
private JPanel getCenterPanel() {
JPanel spinupPanel = new JPanel();
- this.applicationBtn = new JRadioButton(applicationSelection());
- this.spinupBtn = new JRadioButton(spinupSelection());
+ this.applicationBtn = new JRadioButton(applicationSelection());
+ this.spinupBtn = new JRadioButton(spinupSelection());
this.applicationBtn.setSelected(true);
this.spinupBtn.setSelected(false);
spinupPanel.add(this.spinupBtn);
spinupPanel.add(this.applicationBtn);
-
+
ButtonGroup btnGroup = new ButtonGroup();
btnGroup.add(this.spinupBtn);
btnGroup.add(this.applicationBtn);
-
+
JPanel beld4DirPanel = new JPanel();
beld4Dir = new JTextField(40);
beld4Dir.setToolTipText("I.E. share_data/beld4_cmaq12km_2001.nc");
-
+
beld4DirBrowser = new JButton(BrowseAction.browseAction(this, app.getCurrentDir(), "BELD4 file", beld4Dir));
beld4DirPanel.add(beld4Dir);
- beld4DirPanel.add(beld4DirBrowser);
-
+ beld4DirPanel.add(beld4DirBrowser);
+
JPanel panel = new JPanel(new SpringLayout());
SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
-// JPanel swatPanel = new JPanel();
-// this.swatDayBox = new JCheckBox("Daily", true);
-// swatPanel.add(this.swatDayBox);
-
+
+ // JPanel swatPanel = new JPanel();
+ // this.swatDayBox = new JCheckBox("Daily", true);
+ // swatPanel.add(this.swatDayBox);
+
layout.addLabelWidgetPair("Grid Description:", getGridDescPanel(false), panel);
layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
layout.addLabelWidgetPair("BELD4 NetCDF File: ", beld4DirPanel, panel);
- //layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
+ // layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
layout.addLabelWidgetPair(indent + "Output Type:", spinupPanel, panel);
- //layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
- //layout.addLabelWidgetPair(" For Swat Inputs:", swatPanel, panel);
- //layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
+ // layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
+ // layout.addLabelWidgetPair(" For Swat Inputs:", swatPanel, panel);
+ // layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
layout.makeCompactGrid(panel, 4, 2, // number of rows and cols
10, 10, // initial X and Y
@@ -127,35 +128,33 @@ private JPanel getCenterPanel() {
return panel;
}
-
+
private Action applicationSelection() {
return new AbstractAction("EPIC APP") {
public void actionPerformed(ActionEvent e) {
processSelec();
}
-
+
};
}
-
+
private Action spinupSelection() {
return new AbstractAction("EPIC SPINUP") {
public void actionPerformed(ActionEvent e) {
processSelec();
}
-
+
};
}
-
+
private void processSelec() {
- if ( applicationBtn.isSelected()) {
+ if (applicationBtn.isSelected()) {
spinup = false;
} else {
spinup = true;
}
}
-
-
private JPanel getSouthPanel() {
JPanel panel = new JPanel();
JButton display = new JButton(runAction());
@@ -165,7 +164,7 @@ private JPanel getSouthPanel() {
return panel;
}
-
+
private Action runAction() {
return new AbstractAction("Run") {
private static final long serialVersionUID = 8573618661168062193L;
@@ -180,133 +179,215 @@ public void actionPerformed(ActionEvent e) {
}
};
}
-
+
private void generateRunScript() throws Exception {
String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- if (baseDir == null || baseDir.isEmpty())
+ if (baseDir == null || baseDir.isEmpty())
throw new Exception("Base dir is empty, please specify it in the configuration file!");
-
+
String scenarioDir = this.scenarioDir.getText();
- if ( scenarioDir == null || scenarioDir.isEmpty())
+ if (scenarioDir == null || scenarioDir.isEmpty())
throw new Exception("Please select scenario dir first!");
-
+
File beld4F = new File(this.beld4Dir.getText());
- if (beld4F == null || beld4F.isDirectory() || ! beld4F.exists())
- throw new Exception("Beld4 file is not existing!");
-
+ if (beld4F == null || beld4F.isDirectory() || !beld4F.exists())
+ throw new Exception("Beld4 file is not existing!");
+
validateGrids();
-
+
String sahome = Constants.getProperty(Constants.SA_HOME, msg);
- if (sahome == null || sahome.trim().isEmpty() || !(new File(sahome).exists()))
- throw new Exception("SA dir is empty, please specify it in the configuration file!");
-
- outMessages += "Epic base: " + baseDir + ls;
+ // if (sahome == null || sahome.trim().isEmpty() || !(new
+ // File(sahome).exists()))
+ if (sahome == null)
+ throw new Exception("SA dir is empty, please specify it in the configuration file!");
+
+ outMessages += "Epic base: " + baseDir + ls;
outMessages += "SA home: " + sahome + ls;
-
- final String file = writeRunScript(baseDir, scenarioDir, sahome);
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+
+ final String jobFile = writeRunScript(baseDir, scenarioDir, sahome);
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir);
+ } else {
+ batchFile = null;
+ }
Thread populateThread = new Thread(new Runnable() {
public void run() {
- runScript(file);
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile);
+ }
}
});
populateThread.start();
}
- protected String writeRunScript(
- String baseDir,
- String scenarioDir,
- String sahome ) throws Exception {
-
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or java.sql.Timestamp!
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
- String file = scenarioDir.trim() + "/scripts";
-
- if (spinup)
- file = file.trim() + "/epicYearlyAverage2CMAQ_spinup" + timeStamp + ".csh";
+ // This is legacy code that has been moved to it's own method
+ protected void writeScriptFile(String file, String content) {
+
+ String mesg = "";
+
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(content);
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ // printStackTrace();
+ // g.error("Error generating EPIC script file", e);
+ app.showMessage("Write script", e.getMessage());
+ }
+
+ app.showMessage("Write script", mesg);
+ }
+
+ protected String writeRunScript(String baseDir, String scenarioDir, String sahome) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String file = scenarioDir.trim() + "/scripts";
+
+ if (spinup)
+ file = file.trim() + "/epicYearlyAverage2CMAQ_spinup" + timeStamp + ".csh";
else
file = file.trim() + "/epicYearlyAverage2CMAQ_app" + timeStamp + ".csh";
-
+
StringBuilder sb = new StringBuilder();
-
+
sb.append(getScriptHeader() + ls);
sb.append("#" + ls + "# Set up runtime environment" + ls + "#" + ls);
sb.append("setenv EPIC_DIR " + baseDir + ls);
sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv SA_HOME " + sahome +ls);
- sb.append("source $SA_HOME/"+ Constants.SA_SETUP_FILE + ls + ls);
+ sb.append("setenv SA_HOME " + sahome + ls);
+ sb.append("source $SA_HOME/" + Constants.SA_SETUP_FILE + ls + ls);
sb.append("#" + ls + "# Define domain grids" + ls + "#" + ls);
sb.append("setenv GRID_PROJ \"" + proj4proj.getText().trim() + "\"" + ls + ls);
- sb.append("setenv GRID_ROWS " + ((Number)rows.getValue()).intValue() + ls);
- sb.append("setenv GRID_COLUMNS " + ((Number)cols.getValue()).intValue() + ls + ls);
- sb.append("setenv GRID_XMIN " + ((Number)xmin.getValue()).doubleValue() + ls);
- sb.append("setenv GRID_YMIN " + ((Number)ymin.getValue()).doubleValue() + ls + ls);
- sb.append("setenv GRID_XCELLSIZE " + ((Number)xSize.getValue()).doubleValue() + ls);
- sb.append("setenv GRID_YCELLSIZE " + ((Number)ySize.getValue()).doubleValue() + ls + ls);
- sb.append("setenv GRID_NAME \"" + (gridName.getText() == null ? "" : gridName.getText().trim()) + "\"" + ls + ls);
- sb.append("#" + ls
- + "# set EPIC output file directory which containts each day data" + ls
- + "#" + ls);
-
- if (spinup)
- sb.append("setenv DATA_DIR $SCEN_DIR/output4CMAQ/spinup/5years/" + ls + ls);
- else
- sb.append("setenv DATA_DIR $SCEN_DIR/output4CMAQ/app/year/" + ls + ls);
-
- sb.append("# Define BELD4 input file" + ls );
+ sb.append("setenv GRID_ROWS " + ((Number) rows.getValue()).intValue() + ls);
+ sb.append("setenv GRID_COLUMNS " + ((Number) cols.getValue()).intValue() + ls + ls);
+ sb.append("setenv GRID_XMIN " + ((Number) xmin.getValue()).doubleValue() + ls);
+ sb.append("setenv GRID_YMIN " + ((Number) ymin.getValue()).doubleValue() + ls + ls);
+ sb.append("setenv GRID_XCELLSIZE " + ((Number) xSize.getValue()).doubleValue() + ls);
+ sb.append("setenv GRID_YCELLSIZE " + ((Number) ySize.getValue()).doubleValue() + ls + ls);
+ sb.append("setenv GRID_NAME \"" + (gridName.getText() == null ? "" : gridName.getText().trim()) + "\"" + ls
+ + ls);
+
+ sb.append("# Define BELD4 input file" + ls);
sb.append("setenv DOMAIN_BELD4_NETCDF " + beld4Dir.getText() + ls + ls);
- sb.append("#" + ls
- + "# Output file:" + ls
- + "#" + ls);
+ sb.append("# Process multiple years" + ls);
+ sb.append("set SIM_YEAR=\"$SCEN_DIR/output4CMAQ/app/[1-2][0-9][0-9][0-9]\"" +ls);
+ sb.append("foreach MULTI_YEAR_DIR ($SIM_YEAR)" + ls);
+ sb.append(" set MULTI_YEAR=`basename $MULTI_YEAR_DIR`" + ls);
+ sb.append(" setenv SIM_YEAR $MULTI_YEAR" + ls);
+ sb.append(" #" + ls + " # set EPIC output file directory which containts each day data" + ls + " #" + ls);
if (spinup)
- sb.append("setenv OUTPUT_NETCDF_FILE $SCEN_DIR/output4CMAQ/spinup/toCMAQ/epic2cmaq_year.nc" + ls + ls);
+ sb.append(" setenv DATA_DIR $SCEN_DIR/output4CMAQ/spinup/${MULTI_YEAR}/year/" + ls);
+ else
+ sb.append(" setenv DATA_DIR $SCEN_DIR/output4CMAQ/app/${MULTI_YEAR}/year/" + ls + ls);
+
+ sb.append(" #" + ls + " # Output file:" + ls + " #" + ls);
+ if (spinup)
+ sb.append(" setenv OUTPUT_NETCDF_FILE $SCEN_DIR/output4CMAQ/spinup/toCMAQ/epic2cmaq_year.nc" + ls + ls);
else
- sb.append("setenv OUTPUT_NETCDF_FILE $SCEN_DIR/output4CMAQ/app/toCMAQ/epic2cmaq_year.nc" + ls + ls);
-
- sb.append("#Total from all crops" + ls );
+ sb.append(" setenv OUTPUT_NETCDF_FILE $SCEN_DIR/output4CMAQ/app/${MULTI_YEAR}/toCMAQ/epic2cmaq_year.nc" + ls + ls);
+
+ sb.append(" #Total from all crops" + ls);
if (spinup)
- sb.append("setenv OUTPUT_NETCDF_FILE_TOTAL " +
- "$SCEN_DIR/output4CMAQ/spinup/toCMAQ/epic2cmaq_year_total.nc" + ls + ls);
+ sb.append(" setenv OUTPUT_NETCDF_FILE_TOTAL " + "$SCEN_DIR/output4CMAQ/spinup/toCMAQ/epic2cmaq_year_total.nc"
+ + ls + ls);
else
- sb.append("setenv OUTPUT_NETCDF_FILE_TOTAL " +
- "$SCEN_DIR/output4CMAQ/app/toCMAQ/epic2cmaq_year_total.nc" + ls + ls);
-
-
- sb.append("#" + ls
- + "# run the EPIC output processing program:" + ls
- + "#" + ls);
- sb.append("$SA_HOME/bin/64bits/extractEPICYearlyAverage2CMAQ.exe" + ls + ls);
-
-// Boolean swatDayYN = swatDayBox.isSelected()? true : false;
-// System.out.println(swatDayYN);
-// if (swatDayYN) sb.append(getScriptDaySwat());
-
+ sb.append(" setenv OUTPUT_NETCDF_FILE_TOTAL " + "$SCEN_DIR/output4CMAQ/app/${MULTI_YEAR}/toCMAQ/epic2cmaq_year_total.nc"
+ + ls + ls);
+
+ sb.append(" #" + ls + " # run the EPIC output processing program:" + ls + " #" + ls);
+ sb.append(" $SA_HOME/bin/64bits/extractEPICYearlyAverage2CMAQ.exe" + ls);
+ sb.append("end"+ls);
+
+ // Boolean swatDayYN = swatDayBox.isSelected()? true : false;
+ // System.out.println(swatDayYN);
+ // if (swatDayYN) sb.append(getScriptDaySwat());
+
sb.append("#===================================================================" + ls);
String mesg = "";
try {
File script = new File(file);
Runtime.getRuntime().exec("chmod 755 " + script.getAbsolutePath());
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
- mesg += "Created a script file: " + file + ls;
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception( e.getMessage());
- }
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+ mesg += "Created a script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
app.showMessage("Write script", mesg);
return file;
}
+ protected String writeBatchFile(String jobFile, String scenarioDir) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitEpicYearlyAverage2CMAQ";
+ if (spinup)
+ batchFile += "submitEpicYearlyAverage2CMAQ_spinup" + timeStamp + ".csh";
+ else
+ batchFile += "submitEpicYearlyAverage2CMAQ_app" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
+
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+
private String getScriptHeader() {
StringBuilder sb = new StringBuilder();
String ls = "\n";
sb.append("#!/bin/csh -f" + ls);
sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to process EPIC modeling yearly average output for CMAQ bi-directional" + ls);
- sb.append("# ammonia surface flux modeling" + ls);
+ sb.append("# Purpose: to process EPIC modeling yearly average output for CMAQ bi-directional" + ls);
+ sb.append("# ammonia surface flux modeling" + ls);
sb.append("#" + ls);
sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
sb.append("# in support of the EPA CMAS project, 2010." + ls);
@@ -314,74 +395,93 @@ private String getScriptHeader() {
sb.append("# Written by: L. R., NOV. 2010" + ls);
sb.append("#" + ls);
sb.append("# Call program: epicYearlyAverage2CMAQ.exe" + ls);
- sb.append("# Needed environment variables included in the script file to run." + ls);
- sb.append("#" + ls);
+ sb.append("# Needed environment variables included in the script file to run." + ls);
+ sb.append("#" + ls);
sb.append("#***************************************************************************************" + ls + ls);
-
+
return sb.toString();
}
-
+
private String getScriptDaySwat() {
StringBuilder sb = new StringBuilder();
String ls = "\n";
sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: Prepare inputs for SWAT by summarizing data to regions" + ls);
- sb.append("# from the extracted EPIC *NCD output file:" + ls);
- sb.append("#" + ls);
+ sb.append("# Purpose: Prepare inputs for SWAT by summarizing data to regions" + ls);
+ sb.append("# from the extracted EPIC *NCD output file:" + ls);
+ sb.append("#" + ls);
sb.append("#***************************************************************************************" + ls + ls);
-
+
sb.append("#" + ls);
sb.append("# Define output type and simulation year" + ls);
sb.append("#" + ls);
-
- String year = domain.getSimYear();
- if ( spinup )
- sb.append("setenv TYPE \"spinup\"" +ls );
+
+ String year = domain.getSimYear();
+ if (spinup)
+ sb.append("setenv TYPE \"spinup\"" + ls);
else
- sb.append("setenv TYPE \"app\"" +ls);
- sb.append("setenv YEAR "+ year +ls +ls);
-
- sb.append("setenv DATA_DIR $SCEN_DIR/output4CMAQ/$TYPE/daily/" + ls +ls );
-
- sb.append("# Crop fraction data" +ls );
- sb.append("setenv SITEFILE ${SCEN_DIR}/share_data/EPICSites_Info.csv" +ls );
-
- sb.append("# set crops in the summary" +ls );
- sb.append("#setenv CROPS \"BARLEY\"" +ls );
- sb.append("setenv CROPS \"ALL\"" +ls +ls);
-
- sb.append("# set output file" +ls );
- sb.append("if ( ! -e $DATA_DIR/swat ) mkdir -p $DATA_DIR/swat" +ls );
- sb.append("setenv OUTFILE $DATA_DIR/swat/HUC8_" +ls +ls);
-
- sb.append("echo \"Run daily summary for swat: \" ${SCEN_DIR}" +ls );
-
- sb.append("R CMD BATCH --no-save --slave "
- + "$EPIC_DIR/util/misc/swat/epic2swat_daily_HUC8.R "
- + "${SCEN_DIR}/scripts/epic2swat_daily_HUC8.log" +ls +ls);
+ sb.append("setenv TYPE \"app\"" + ls);
+ sb.append("setenv YEAR " + year + ls + ls);
+
+ sb.append("setenv DATA_DIR $SCEN_DIR/output4CMAQ/$TYPE/daily/" + ls + ls);
+
+ sb.append("# Crop fraction data" + ls);
+ sb.append("setenv SITEFILE ${SCEN_DIR}/share_data/EPICSites_Info.csv" + ls);
+
+ sb.append("# set crops in the summary" + ls);
+ sb.append("#setenv CROPS \"BARLEY\"" + ls);
+ sb.append("setenv CROPS \"ALL\"" + ls + ls);
+
+ sb.append("# set output file" + ls);
+ sb.append("if ( ! -e $DATA_DIR/swat ) mkdir -p $DATA_DIR/swat" + ls);
+ sb.append("setenv OUTFILE $DATA_DIR/swat/HUC8_" + ls + ls);
+
+ sb.append("echo \"Run daily summary for swat: \" ${SCEN_DIR}" + ls);
+
+ sb.append("R CMD BATCH --no-save --slave " + "$EPIC_DIR/util/misc/swat/epic2swat_daily_HUC8.R "
+ + "${SCEN_DIR}/scripts/epic2swat_daily_HUC8.log" + ls + ls);
return sb.toString();
}
-
+
private void runScript(final String file) {
String log = file + ".log";
-
+
outMessages += "Script file: " + file + ls;
outMessages += "Log file: " + log + ls;
runMessages.setText(outMessages);
runMessages.validate();
FileRunner.runScript(file, log, msg);
- }
+ }
+
+ private void runBatchScript(final String batchFile, final String jobFile) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qYearlyExt = Constants.getProperty(Constants.QUEUE_YEARLY_EXT, msg);
+
+ File script = new File(batchFile.replaceAll("\\\\", "\\\\\\\\"));
+
+ sb.append(qcmd + " " + qYearlyExt + " -o " + log + " " + script.getAbsolutePath());
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
@Override
public void projectLoaded() {
- fields = (EpicYearlyAverage2CMAQFields)app.getProject().getPage(fields.getName());
+ fields = (EpicYearlyAverage2CMAQFields) app.getProject().getPage(fields.getName());
domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if ( fields != null ){
+ if (fields != null) {
String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length()>0 )
+ if (scenloc != null && scenloc.trim().length() > 0)
this.scenarioDir.setText(scenloc);
- else
+ else
this.scenarioDir.setText(fields.getScenarioDir());
rows.setValue(fields.getRows());
cols.setValue(fields.getCols());
@@ -393,52 +493,63 @@ public void projectLoaded() {
gridName.setText(fields.getGridName());
runMessages.setText(fields.getMessage());
- if ((fields.getBeld4ncf()==null || fields.getBeld4ncf().trim().isEmpty() )) {
+ if ((fields.getBeld4ncf() == null || fields.getBeld4ncf().trim().isEmpty())) {
String scenDir = fields.getScenarioDir().trim();
- String gridName = fields.getGridName().trim();
+ String gridName = fields.getGridName().trim();
String year = fields.getNlcdYear().trim();
- String beld4file = scenDir + "/share_data/beld4_" + gridName + "_" + year +".nc";
- //System.out.println(beld4file);
-// File f = new File(beld4file);
-// if(f.exists()){
- this.beld4Dir.setText(beld4file);
-// }
-// else
-// this.beld4Dir.setText(scenDir);
- }
- else
- this.beld4Dir.setText( fields.getBeld4ncf());
+ String beld4file = scenDir + "/share_data/beld4_" + gridName + "_" + year + ".nc";
+ // System.out.println(beld4file);
+ // File f = new File(beld4file);
+ // if(f.exists()){
+ this.beld4Dir.setText(beld4file);
+ // }
+ // else
+ // this.beld4Dir.setText(scenDir);
+ } else
+ this.beld4Dir.setText(fields.getBeld4ncf());
- }else {
+ } else {
newProjectCreated();
}
}
@Override
public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( rows != null ) fields.setRows(Integer.parseInt(rows.getText() == null? "" : rows.getValue()+""));
- if ( cols != null ) fields.setCols(Integer.parseInt(cols.getText() == null? "" : cols.getValue()+""));
- if ( xSize != null ) fields.setXcellSize(Float.parseFloat(xSize.getText() == null? "" : xSize.getValue()+""));
- if ( ySize != null ) fields.setYcellSize(Float.parseFloat(ySize.getText() == null? "" : ySize.getValue()+""));
- if ( xmin != null ) fields.setXmin(Float.parseFloat(xmin.getText() == null? "" : xmin.getValue()+""));
- if ( ymin != null ) fields.setYmin(Float.parseFloat(ymin.getText() == null? "" : ymin.getValue()+""));
- if ( proj4proj != null ) fields.setProj(proj4proj.getText() == null? "" : proj4proj.getText());
- if ( gridName != null ) fields.setGridName(gridName.getText()== null? "" : gridName.getText());
-
- if ( runMessages != null ) fields.setMessage(runMessages.getText());
- if ( beld4Dir != null ) fields.setBeld4ncf(beld4Dir.getText()== null? "" : beld4Dir.getText());
+ if (scenarioDir != null)
+ domain.setScenarioDir(scenarioDir.getText());
+ if (scenarioDir != null)
+ fields.setScenarioDir(scenarioDir.getText());
+ if (rows != null)
+ fields.setRows(Integer.parseInt(rows.getText() == null ? "" : rows.getValue() + ""));
+ if (cols != null)
+ fields.setCols(Integer.parseInt(cols.getText() == null ? "" : cols.getValue() + ""));
+ if (xSize != null)
+ fields.setXcellSize(Float.parseFloat(xSize.getText() == null ? "" : xSize.getValue() + ""));
+ if (ySize != null)
+ fields.setYcellSize(Float.parseFloat(ySize.getText() == null ? "" : ySize.getValue() + ""));
+ if (xmin != null)
+ fields.setXmin(Float.parseFloat(xmin.getText() == null ? "" : xmin.getValue() + ""));
+ if (ymin != null)
+ fields.setYmin(Float.parseFloat(ymin.getText() == null ? "" : ymin.getValue() + ""));
+ if (proj4proj != null)
+ fields.setProj(proj4proj.getText() == null ? "" : proj4proj.getText());
+ if (gridName != null)
+ fields.setGridName(gridName.getText() == null ? "" : gridName.getText());
+
+ if (runMessages != null)
+ fields.setMessage(runMessages.getText());
+ if (beld4Dir != null)
+ fields.setBeld4ncf(beld4Dir.getText() == null ? "" : beld4Dir.getText());
}
@Override
public void newProjectCreated() {
domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
-
+
String scenDir = domain.getScenarioDir().trim();
- String gName = domain.getGridName().trim();
+ String gName = domain.getGridName().trim();
String nlcdY = domain.getNlcdYear().trim();
- scenarioDir.setText(scenDir);
+ scenarioDir.setText(scenDir);
rows.setValue(domain.getRows());
cols.setValue(domain.getCols());
xmin.setValue(domain.getXmin());
@@ -447,17 +558,17 @@ public void newProjectCreated() {
ySize.setValue(domain.getYcellSize());
proj4proj.setText(domain.getProj());
gridName.setText(domain.getGridName());
-
- String beld4file = scenDir + "/share_data/beld4_" + gName + "_" + nlcdY +".nc";
-// File f = new File(beld4file);
-// if(f.exists()){
- this.beld4Dir.setText(beld4file);
-// }
-// else
-// this.beld4Dir.setText(scenDir);
-
+
+ String beld4file = scenDir + "/share_data/beld4_" + gName + "_" + nlcdY + ".nc";
+ // File f = new File(beld4file);
+ // if(f.exists()){
+ this.beld4Dir.setText(beld4file);
+ // }
+ // else
+ // this.beld4Dir.setText(scenDir);
+
runMessages.setText("");
- if ( fields == null ) {
+ if (fields == null) {
fields = new EpicYearlyAverage2CMAQFields();
app.getProject().addPage(fields);
}
diff --git a/festc_core/src/gov/epa/festc/gui/HelpWindowWithContents.java b/festc_core/src/gov/epa/festc/gui/HelpWindowWithContents.java
index 02f066c..82a2b7d 100644
--- a/festc_core/src/gov/epa/festc/gui/HelpWindowWithContents.java
+++ b/festc_core/src/gov/epa/festc/gui/HelpWindowWithContents.java
@@ -1,156 +1,156 @@
-package gov.epa.festc.gui;
-
-import anl.gui.window.dialog.OKWindow;
-
-import javax.swing.*;
-import javax.swing.event.HyperlinkEvent;
-import javax.swing.event.HyperlinkListener;
-import java.awt.*;
-import java.awt.event.WindowAdapter;
-import java.awt.event.WindowEvent;
-import java.io.File;
-import java.io.IOException;
-import java.net.URL;
-
-public class HelpWindowWithContents extends OKWindow {
- private static final long serialVersionUID = -3954828275072932197L;
-
- JEditorPane editorPaneLeft, editorPaneRight;
-
- public HelpWindowWithContents(Dialog dialog, String title, String doc,
- String doc2) {
- super(dialog, title, false);
- inits(doc, doc2);
- }
-
- public HelpWindowWithContents(Frame frame, String title, String doc,
- String doc2) {
- // super(fr.getFrame(),title,state);
- super(frame, title, false);
- inits(doc, doc2);
- }
-
- public void inits(String doc, String doc2) {
- Dimension dim = Toolkit.getDefaultToolkit().getScreenSize();
-
- JSplitPane splitPanel = new JSplitPane();
- splitPanel.setBorder(new javax.swing.border.EtchedBorder());
-
- editorPaneLeft = new JEditorPane();
- editorPaneLeft.setEditable(false);
- editorPaneLeft.addHyperlinkListener(new HyperlinkListener() {
- public void hyperlinkUpdate(HyperlinkEvent e) {
- if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
-
- if (e.getDescription().startsWith("#")) {
- // move to the link
- editorPaneRight.scrollToReference(e.getDescription()
- .substring(1));
-
- }
- }
- }
- });
- // JPanel leftPanel = new JPanel(new BorderLayout());
- // leftPanel.add(editorPaneLeft,BorderLayout.CENTER);
-
- editorPaneRight = new JEditorPane();
- editorPaneRight.setEditable(false);
- editorPaneRight.addHyperlinkListener(new HyperlinkListener() {
- public void hyperlinkUpdate(HyperlinkEvent e) {
- if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
- JEditorPane src = (JEditorPane) e.getSource();
- if (e.getDescription().startsWith("#")) {
- // move to the link
- src.scrollToReference(e.getDescription().substring(1));
-
- }
- }
- }
- });
- // JPanel rightPanel = new JPanel(new BorderLayout());
- // rightPanel.add(editorPaneRight,BorderLayout.CENTER);
-
- JScrollPane editorScrollPaneLeft = new JScrollPane(editorPaneLeft);
- editorScrollPaneLeft
- .setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
- editorScrollPaneLeft.setPreferredSize(new Dimension(200, 300));
- editorScrollPaneLeft.setMinimumSize(new Dimension(200, 300));
-
- JScrollPane editorScrollPaneRight = new JScrollPane(editorPaneRight);
- editorScrollPaneRight
- .setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
- editorScrollPaneRight.setPreferredSize(new Dimension(500, 300));
- editorScrollPaneRight.setMinimumSize(new Dimension(300, 100));
-
- // setDoc(editorPaneLeft,doc);
- setDoc(editorPaneRight, doc2);
- setDefaultCloseOperation(DO_NOTHING_ON_CLOSE);
- WindowAdapter catchclose = new WindowAdapter() {
- public void windowClosing(WindowEvent we) {
- dispose();
- }
-
- // remove this if fixed in JDK 1.3.1
- public void windowActivated(WindowEvent ev) {
- ev.getWindow().repaint();
- }
- };
- this.addWindowListener(catchclose);
- // splitPanel.setLeftComponent(editorScrollPaneLeft);
- // splitPanel.setRightComponent(editorScrollPaneRight);
-
- // getContentPane().add("Center", splitPanel);
- getContentPane().add("Center", editorScrollPaneRight);
- pack();
- setLocation(100, 100);
- setSize(dim.width - 200, dim.height - 200);
- validate();
-
- // splitPanel.setDividerLocation(0.5);
- setVisible(true);
- }
-
- void setDoc(JEditorPane pane, String doc) {
- if (doc != null) {
- try {
- File file = new File(doc);
- URL url = file.toURI().toURL();
- pane.setPage(url);
- } catch (IOException e) {
- e.printStackTrace();
- System.err.println("Attempted to read a bad file: " + doc);
- }
- } else {
- System.err.println("Couldn't find file: " + doc);
- }
- }
-
- public boolean doAction() {
- return true;
- }
-
- public void dispose() {
- window = null;
- super.dispose();
- }
-
- static HelpWindowWithContents window;
-
- public static void showContents(Window frame, String title, String doc,
- String doc2) {
- if (window == null) {
- if (frame instanceof Dialog)
- window = new HelpWindowWithContents((Dialog) frame, title, doc,
- doc2);
- else
- window = new HelpWindowWithContents((Frame) frame, title, doc,
- doc2);
- } else {
- window.setTitle(title);
- //window.setDoc(window.editorPaneLeft, doc);
- window.setDoc(window.editorPaneRight, doc2);
- }
- }
-
-}
+package gov.epa.festc.gui;
+
+import anl.gui.window.dialog.OKWindow;
+
+import javax.swing.*;
+import javax.swing.event.HyperlinkEvent;
+import javax.swing.event.HyperlinkListener;
+import java.awt.*;
+import java.awt.event.WindowAdapter;
+import java.awt.event.WindowEvent;
+import java.io.File;
+import java.io.IOException;
+import java.net.URL;
+
+public class HelpWindowWithContents extends OKWindow {
+ private static final long serialVersionUID = -3954828275072932197L;
+
+ JEditorPane editorPaneLeft, editorPaneRight;
+
+ public HelpWindowWithContents(Dialog dialog, String title, String doc,
+ String doc2) {
+ super(dialog, title, false);
+ inits(doc, doc2);
+ }
+
+ public HelpWindowWithContents(Frame frame, String title, String doc,
+ String doc2) {
+ // super(fr.getFrame(),title,state);
+ super(frame, title, false);
+ inits(doc, doc2);
+ }
+
+ public void inits(String doc, String doc2) {
+ Dimension dim = Toolkit.getDefaultToolkit().getScreenSize();
+
+ JSplitPane splitPanel = new JSplitPane();
+ splitPanel.setBorder(new javax.swing.border.EtchedBorder());
+
+ editorPaneLeft = new JEditorPane();
+ editorPaneLeft.setEditable(false);
+ editorPaneLeft.addHyperlinkListener(new HyperlinkListener() {
+ public void hyperlinkUpdate(HyperlinkEvent e) {
+ if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
+
+ if (e.getDescription().startsWith("#")) {
+ // move to the link
+ editorPaneRight.scrollToReference(e.getDescription()
+ .substring(1));
+
+ }
+ }
+ }
+ });
+ // JPanel leftPanel = new JPanel(new BorderLayout());
+ // leftPanel.add(editorPaneLeft,BorderLayout.CENTER);
+
+ editorPaneRight = new JEditorPane();
+ editorPaneRight.setEditable(false);
+ editorPaneRight.addHyperlinkListener(new HyperlinkListener() {
+ public void hyperlinkUpdate(HyperlinkEvent e) {
+ if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
+ JEditorPane src = (JEditorPane) e.getSource();
+ if (e.getDescription().startsWith("#")) {
+ // move to the link
+ src.scrollToReference(e.getDescription().substring(1));
+
+ }
+ }
+ }
+ });
+ // JPanel rightPanel = new JPanel(new BorderLayout());
+ // rightPanel.add(editorPaneRight,BorderLayout.CENTER);
+
+ JScrollPane editorScrollPaneLeft = new JScrollPane(editorPaneLeft);
+ editorScrollPaneLeft
+ .setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
+ editorScrollPaneLeft.setPreferredSize(new Dimension(200, 300));
+ editorScrollPaneLeft.setMinimumSize(new Dimension(200, 300));
+
+ JScrollPane editorScrollPaneRight = new JScrollPane(editorPaneRight);
+ editorScrollPaneRight
+ .setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
+ editorScrollPaneRight.setPreferredSize(new Dimension(500, 300));
+ editorScrollPaneRight.setMinimumSize(new Dimension(300, 100));
+
+ // setDoc(editorPaneLeft,doc);
+ setDoc(editorPaneRight, doc2);
+ setDefaultCloseOperation(DO_NOTHING_ON_CLOSE);
+ WindowAdapter catchclose = new WindowAdapter() {
+ public void windowClosing(WindowEvent we) {
+ dispose();
+ }
+
+ // remove this if fixed in JDK 1.3.1
+ public void windowActivated(WindowEvent ev) {
+ ev.getWindow().repaint();
+ }
+ };
+ this.addWindowListener(catchclose);
+ // splitPanel.setLeftComponent(editorScrollPaneLeft);
+ // splitPanel.setRightComponent(editorScrollPaneRight);
+
+ // getContentPane().add("Center", splitPanel);
+ getContentPane().add("Center", editorScrollPaneRight);
+ pack();
+ setLocation(100, 100);
+ setSize(dim.width - 200, dim.height - 200);
+ validate();
+
+ // splitPanel.setDividerLocation(0.5);
+ setVisible(true);
+ }
+
+ void setDoc(JEditorPane pane, String doc) {
+ if (doc != null) {
+ try {
+ File file = new File(doc);
+ URL url = file.toURI().toURL();
+ pane.setPage(url);
+ } catch (IOException e) {
+ e.printStackTrace();
+ System.err.println("Attempted to read a bad file: " + doc);
+ }
+ } else {
+ System.err.println("Couldn't find file: " + doc);
+ }
+ }
+
+ public boolean doAction() {
+ return true;
+ }
+
+ public void dispose() {
+ window = null;
+ super.dispose();
+ }
+
+ static HelpWindowWithContents window;
+
+ public static void showContents(Window frame, String title, String doc,
+ String doc2) {
+ if (window == null) {
+ if (frame instanceof Dialog)
+ window = new HelpWindowWithContents((Dialog) frame, title, doc,
+ doc2);
+ else
+ window = new HelpWindowWithContents((Frame) frame, title, doc,
+ doc2);
+ } else {
+ window.setTitle(title);
+ //window.setDoc(window.editorPaneLeft, doc);
+ window.setDoc(window.editorPaneRight, doc2);
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/ListWidget.java b/festc_core/src/gov/epa/festc/gui/ListWidget.java
index f10e2d8..7e7f827 100644
--- a/festc_core/src/gov/epa/festc/gui/ListWidget.java
+++ b/festc_core/src/gov/epa/festc/gui/ListWidget.java
@@ -1,126 +1,126 @@
-package gov.epa.festc.gui;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.swing.DefaultListModel;
-import javax.swing.JList;
-
-
-public class ListWidget extends JList {
-
- private boolean changed;
-
- private DefaultListModel model;
-
- private List indexes;
-
- public ListWidget(Object[] items) {
- model = model(items);
- this.setModel(model);
- changed = false;
- }
-
- public ListWidget(Object[] items, Object[] selected) {
- this(items);
- setSelected(selected);
- }
-
- private DefaultListModel model(Object[] items) {
- DefaultListModel model = new DefaultListModel();
- if (items != null && items.length >0){
- for (int i = 0; i < items.length; i++) {
- model.addElement(items[i]);
- }
- }
- return model;
- }
-
- public void setElements(Object[] items) {
- model.removeAllElements();
- if (items != null && items.length >0){
- for (int i = 0; i < items.length; i++) {
- model.addElement(items[i]);
- }
- }
- }
-
-
- public void setSelected(Object[] selected) {
- indexes = new ArrayList();
- for (int i = 0; i < selected.length; i++)
- indexes.add(model.indexOf(selected[i]));
- //super.setSelectedIndex(indexes.toArray(new Integer[0]));
- }
-
- public List getSelected() {
- return indexes;
- }
-
- public boolean hasChanges() {
- return changed;
- }
-
- public void clear() {
- changed = false;
- }
-
- public boolean contains(Object obj) {
- return model.contains(obj);
- }
-
- public void addElement(Object obj) {
- model.addElement(obj);
- }
-
- public void add(int index, Object obj) {
- model.add(index, obj);
- }
-
- public void removeElements(Object[] removeValues) {
- for (int i = 0; i < removeValues.length; i++) {
- model.removeElement(removeValues[i]);
- }
- }
-
- public void removeAllElements() {
- model.removeAllElements();
-// for (int i = 0; i < model.size(); i++) {
-// model.removeElement(model.get(i));
-// }
- }
-
- public String getElement(int index) {
- return model.elementAt(index).toString();
-// for (int i = 0; i < model.size(); i++) {
-// model.removeElement(model.get(i));
-// }
- }
-
- public void removeSelectedElements() {
-
- Object [] selectedValues = this.getSelectedValues();
- for (int i = 0; i < selectedValues.length; i++) {
- model.removeElement(selectedValues[i]);
- }
- }
-
- public String[] getAllElements() {
- String[] obj = new String[model.getSize()];
- model.copyInto(obj);
- return obj;
- }
-
- //Swap two elements in the list.
- public void swap(int a, int b) {
- Object aObject = model.getElementAt(a);
- Object bObject = model.getElementAt(b);
- model.set(a, bObject);
- model.set(b, aObject);
- }
-
- public void setModelSize(int modelSize) {
- this.model.setSize(modelSize);
- this.model.trimToSize();
- }
-}
+package gov.epa.festc.gui;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import javax.swing.DefaultListModel;
+import javax.swing.JList;
+
+
+public class ListWidget extends JList {
+
+ private boolean changed;
+
+ private DefaultListModel model;
+
+ private List indexes;
+
+ public ListWidget(Object[] items) {
+ model = model(items);
+ this.setModel(model);
+ changed = false;
+ }
+
+ public ListWidget(Object[] items, Object[] selected) {
+ this(items);
+ setSelected(selected);
+ }
+
+ private DefaultListModel model(Object[] items) {
+ DefaultListModel model = new DefaultListModel();
+ if (items != null && items.length >0){
+ for (int i = 0; i < items.length; i++) {
+ model.addElement(items[i]);
+ }
+ }
+ return model;
+ }
+
+ public void setElements(Object[] items) {
+ model.removeAllElements();
+ if (items != null && items.length >0){
+ for (int i = 0; i < items.length; i++) {
+ model.addElement(items[i]);
+ }
+ }
+ }
+
+
+ public void setSelected(Object[] selected) {
+ indexes = new ArrayList();
+ for (int i = 0; i < selected.length; i++)
+ indexes.add(model.indexOf(selected[i]));
+ //super.setSelectedIndex(indexes.toArray(new Integer[0]));
+ }
+
+ public List getSelected() {
+ return indexes;
+ }
+
+ public boolean hasChanges() {
+ return changed;
+ }
+
+ public void clear() {
+ changed = false;
+ }
+
+ public boolean contains(Object obj) {
+ return model.contains(obj);
+ }
+
+ public void addElement(Object obj) {
+ model.addElement(obj);
+ }
+
+ public void add(int index, Object obj) {
+ model.add(index, obj);
+ }
+
+ public void removeElements(Object[] removeValues) {
+ for (int i = 0; i < removeValues.length; i++) {
+ model.removeElement(removeValues[i]);
+ }
+ }
+
+ public void removeAllElements() {
+ model.removeAllElements();
+// for (int i = 0; i < model.size(); i++) {
+// model.removeElement(model.get(i));
+// }
+ }
+
+ public String getElement(int index) {
+ return model.elementAt(index).toString();
+// for (int i = 0; i < model.size(); i++) {
+// model.removeElement(model.get(i));
+// }
+ }
+
+ public void removeSelectedElements() {
+
+ Object [] selectedValues = this.getSelectedValues();
+ for (int i = 0; i < selectedValues.length; i++) {
+ model.removeElement(selectedValues[i]);
+ }
+ }
+
+ public String[] getAllElements() {
+ String[] obj = new String[model.getSize()];
+ model.copyInto(obj);
+ return obj;
+ }
+
+ //Swap two elements in the list.
+ public void swap(int a, int b) {
+ Object aObject = model.getElementAt(a);
+ Object bObject = model.getElementAt(b);
+ model.set(a, bObject);
+ model.set(b, aObject);
+ }
+
+ public void setModelSize(int modelSize) {
+ this.model.setSize(modelSize);
+ this.model.trimToSize();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/gui/ManFileModPanel.java b/festc_core/src/gov/epa/festc/gui/ManFileModPanel.java
index d8e4ccf..18fa7fc 100644
--- a/festc_core/src/gov/epa/festc/gui/ManFileModPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/ManFileModPanel.java
@@ -1,349 +1,357 @@
-package gov.epa.festc.gui;
-
-import java.awt.BorderLayout;
-import java.awt.Dimension;
-import java.awt.Font;
-import java.awt.event.ActionEvent;
-import java.io.File;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.BorderFactory;
-import javax.swing.BoxLayout;
-import javax.swing.ButtonGroup;
-import javax.swing.JButton;
-import javax.swing.JLabel;
-import javax.swing.JList;
-import javax.swing.JPanel;
-import javax.swing.JRadioButton;
-import javax.swing.JScrollPane;
-import javax.swing.ListSelectionModel;
-import javax.swing.SpringLayout;
-import javax.swing.SwingConstants;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.core.FestcGUI;
-import gov.epa.festc.core.proj.DomainFields;
-import gov.epa.festc.core.proj.ManFileModFields;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.SpringLayoutGenerator;
-import simphony.util.messages.MessageCenter;
-
-public class ManFileModPanel extends UtilFieldsPanel implements PlotEventListener {
- private static final long serialVersionUID = 8617841823458370182L;
-
- private static final String indent = " ";
- //private static final String LABEL_EPIC_SCENARIO = indent + "Select Scenario Direcotry:";
-
- private JList lstCrops;
-
- private MessageCenter msg;
- private String baseDir;
- private String scenDir;
- private String contFile;
- private String paramFile;
- private String fileFile;
- private String irrFile;
- private String rainFile;
-
- private FestcGUI parent;
- private FestcApplication app;
- private ManFileModFields fields;
-
- private JRadioButton applicationBtn, spinupBtn;
- private boolean isSpinup = false;
-
- public ManFileModPanel(FestcApplication application) {
- app = application;
- msg = app.getMessageCenter();
- fields = new ManFileModFields();
- app.getProject().addPage(fields);
- app.addPlotListener(this);
- add(createPanel());
- }
-
- private JPanel createPanel() {
- JPanel main = new JPanel();
- init();
- main.setLayout(new BoxLayout(main, BoxLayout.Y_AXIS));
- main.add(getNorthPanel() );
- main.add(getCenterPanel() );
- main.add(getSouthPanel() );
- main.add(messageBox());
- return main;
- }
-
- private JPanel getNorthPanel() {
- JPanel panel = new JPanel();
- JLabel title = new JLabel(Constants.EDIT_INFILES, SwingConstants.CENTER);
- title.setFont(new Font("Default", Font.BOLD, 20));
-
- panel.add(title);
- panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 10, 0));
-
- return panel;
- }
-
- private JPanel getSouthPanel() {
- return new JPanel();
- }
-
- private JPanel getCenterPanel() {
- JPanel panel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
- //this.scenarioDir = new JTextField(40);
-
- JPanel spinupPanel = new JPanel();
- this.applicationBtn = new JRadioButton(applicationSelection());
- this.spinupBtn = new JRadioButton(spinupSelection());
- this.applicationBtn.setSelected(true);
- this.spinupBtn.setSelected(false);
- spinupPanel.add(this.spinupBtn);
- spinupPanel.add(this.applicationBtn);
-
- ButtonGroup btnGroup = new ButtonGroup();
- btnGroup.add(this.spinupBtn);
- btnGroup.add(this.applicationBtn);
-
- JPanel cropsPanel = new JPanel(new BorderLayout());
- cropsPanel.add(new JLabel("Crops/Grasses"), BorderLayout.NORTH);
- lstCrops = new JList(Constants.CROPS.keySet().toArray());
- lstCrops.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
- lstCrops.setVisibleRowCount(20);
- JScrollPane scrollCropList = new JScrollPane(lstCrops);
- scrollCropList.setPreferredSize(new Dimension(120, 220));
- cropsPanel.add(scrollCropList, BorderLayout.SOUTH);
-
- JPanel leftPanel = new JPanel();
- leftPanel.add(cropsPanel);
-
- layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
- layout.addLabelWidgetPair(indent + "Simulation Type:", spinupPanel, panel);
- layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
- layout.addWidgetPair(leftPanel, rightPanel(), panel);
-
- layout.makeCompactGrid(panel, 4, 2, // number of rows and cols
- 10, 10, // initial X and Y
- 5, 5); // x and y pading
-
- return panel;
- }
-
- private JPanel rightPanel(){
- JPanel rightPanel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
- JPanel contPanel = new JPanel();
- JButton vcontButton = new JButton(viewAction("cont"));
- JButton econtButton = new JButton(editAction("cont"));
- contPanel.add(vcontButton);
- contPanel.add(econtButton);
- JPanel paramPanel = new JPanel();
- JButton vparamButton = new JButton(viewAction("param"));
- JButton eparamButton = new JButton(editAction("param"));
- paramPanel.add(vparamButton);
- paramPanel.add(eparamButton);
- JPanel filePanel = new JPanel();
- JButton vfileButton = new JButton(viewAction("file"));
- JButton efileButton = new JButton(editAction("file"));
- filePanel.add(vfileButton);
- filePanel.add(efileButton);
- JPanel irrPanel = new JPanel();
- JButton virrButton = new JButton(viewAction("irr"));
- JButton eirrButton = new JButton(editAction("irr"));
- irrPanel.add(virrButton);
- irrPanel.add(eirrButton);
- JPanel rainPanel = new JPanel();
- JButton vrainButton = new JButton(viewAction("rain"));
- JButton erainButton = new JButton(editAction("rain"));
- rainPanel.add(vrainButton);
- rainPanel.add(erainButton);
-
- layout.addLabelWidgetPair("EPICCONT.DAT", contPanel, rightPanel);
- layout.addLabelWidgetPair("PARM0509.DAT", paramPanel, rightPanel);
- layout.addLabelWidgetPair("EPICFILE.DAT", filePanel, rightPanel);
-
- layout.addLabelWidgetPair("RAINFED EPICRUNFILE", rainPanel, rightPanel);
- layout.addLabelWidgetPair("IRRIGATED EPICRUNFILE", irrPanel, rightPanel);
-
- layout.makeCompactGrid(rightPanel, 5, 2, // number of rows and cols
- 10, 10, // initial X and Y
- 50, 12); // x and y pading
-
- return rightPanel;
- }
-
- public void setParent(FestcGUI parent) {
- this.parent = parent;
- }
-
- public Action viewAction(final String name){
- return new AbstractAction("View"){
- /**
- *
- */
- private static final long serialVersionUID = 1L;
-
- public void actionPerformed(ActionEvent e) {
- if (validateFields()){
-
- String file = getFile(name);
- String title = "View: " + file;
-
- ViewFileDialog dialog = new ViewFileDialog(parent.getFrame(), title, new File(file), false);
- dialog.setVisible(true);
- }
-
- }
- };
- }
-
- public Action editAction(final String name){
- return new AbstractAction("Edit"){
- public void actionPerformed(ActionEvent e) {
- if ( validateFields()) {
- String file = getFile(name);
- String title = "Edit: " + file;
- ViewFileDialog dialog = new ViewFileDialog(parent.getFrame(), title, new File(file), true);
- dialog.setVisible(true);
- }
- }
- };
- }
-
-
- private String getFile(String name){
- String file="";
- if ( name.equalsIgnoreCase("cont"))
- file = contFile;
- else if ( name.equalsIgnoreCase("param"))
- file = paramFile;
- else if ( name.equalsIgnoreCase("file"))
- file = fileFile;
- else if ( name.equalsIgnoreCase("irr"))
- file = irrFile;
- else if ( name.equalsIgnoreCase("rain"))
- file = rainFile;
- return file;
- }
-
- private boolean validateFields(){
- String type = "";
- if ( isSpinup )
- type = "spinup";
- else
- type = "app";
-
- baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- baseDir = baseDir.trim();
- if (baseDir == null || baseDir.isEmpty()) {
- app.showMessage("Utilities", "Base dir is empty, please specify it in the configuration file!");
- return false;
- }
-
- scenDir = this.scenarioDir.getText();
- if (scenDir == null || scenDir.isEmpty()) {
- app.showMessage("Utilities", "Scenario dir is empty!");
- return false;
- }
-
- String selCrop = (String) lstCrops.getSelectedValue();
- if ( selCrop == null || selCrop.trim().length() == 0) {
- app.showMessage("View/Edit Files: ", "Please select a crop first!");
- return false;
- }
- if ( selCrop.equalsIgnoreCase("POTATOES") && type.equalsIgnoreCase("spinup"))
- contFile = baseDir + "/common_data/EPIC_model/" + type + "/EPICCONT_POTATOES.DAT";
- else if ( type.equalsIgnoreCase("spinup"))
- contFile = baseDir + "/common_data/EPIC_model/" + type + "/EPICCONT.DAT";
- else
- contFile = scenDir + "/share_data/EPICCONT.DAT";
-
-
- paramFile = baseDir + "/common_data/EPIC_model/" + type + "/PARM0509.DAT";
- fileFile = baseDir + "/common_data/EPIC_model/" + type + "/EPICFILE.DAT";
- if (type.equalsIgnoreCase("spinup")) {
- irrFile = scenDir + "/" + selCrop + "/" + type + "/manage/EPICRUNFILEIRR.DAT";
- rainFile = scenDir + "/" + selCrop + "/" + type + "/manage/EPICRUNFILERAIN.DAT";
- }
- else {
- irrFile = scenDir + "/" + selCrop + "/" + type + "/manage/EPICRUNFILEIRRDW.DAT";
- rainFile = scenDir + "/" + selCrop + "/" + type + "/manage/EPICRUNFILERAINDW.DAT";
- }
- outMessages += "Epic base: " + baseDir + ls +ls;
- outMessages += "Files: " + ls;
- outMessages += contFile + ls;
- outMessages += paramFile + ls;
- outMessages += fileFile + ls;
- outMessages += irrFile + ls;
- outMessages += rainFile + ls;
-
- runMessages.setText(outMessages);
- return true;
- }
-
-
- private Action spinupSelection() {
- return new AbstractAction("EPIC SPINUP") {
- public void actionPerformed(ActionEvent e) {
- processSpinup();
- }
-
- };
- }
-
- private Action applicationSelection() {
- return new AbstractAction("EPIC APP") {
- public void actionPerformed(ActionEvent e) {
- processSpinup();
- }
-
- };
- }
-
- private void processSpinup() {
- if ( applicationBtn.isSelected()) {
- isSpinup = false;
- } else {
- isSpinup = true;
- }
- validateFields();
- }
-
- @Override
- public void newProjectCreated() {
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- scenarioDir.setText(domain.getScenarioDir());
- runMessages.setText("");
- if ( fields == null ) {
- fields = new ManFileModFields();
- app.getProject().addPage(fields);
- }
- }
-
- public void projectLoaded() {
- fields = (ManFileModFields) app.getProject().getPage(fields.getName());
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if ( fields != null ){
- String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length()>0 )
- this.scenarioDir.setText(scenloc);
- else
- this.scenarioDir.setText(fields.getScenarioDir());
- if ( fields.getMessage() != null )
- runMessages.setText(fields.getMessage());
- else
- runMessages.setText("");
- }
- else{
- newProjectCreated();
- }
- }
-
- public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( runMessages != null ) fields.setMessage(runMessages.getText().trim());
- }
-}
+package gov.epa.festc.gui;
+
+import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.io.File;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.BoxLayout;
+import javax.swing.ButtonGroup;
+import javax.swing.JButton;
+import javax.swing.JLabel;
+import javax.swing.JList;
+import javax.swing.JPanel;
+import javax.swing.JRadioButton;
+import javax.swing.JScrollPane;
+import javax.swing.ListSelectionModel;
+import javax.swing.SpringLayout;
+import javax.swing.SwingConstants;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.FestcGUI;
+import gov.epa.festc.core.proj.DomainFields;
+import gov.epa.festc.core.proj.ManFileModFields;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.SpringLayoutGenerator;
+import simphony.util.messages.MessageCenter;
+
+public class ManFileModPanel extends UtilFieldsPanel implements PlotEventListener {
+ private static final long serialVersionUID = 8617841823458370182L;
+
+ private static final String indent = " ";
+ //private static final String LABEL_EPIC_SCENARIO = indent + "Select Scenario Direcotry:";
+
+ private JList lstCrops;
+
+ private MessageCenter msg;
+ private String baseDir;
+ private String scenDir;
+ private String contFile;
+ private String paramFile;
+ private String fileFile;
+ private String irrFile;
+ private String rainFile;
+ private String epicVer;
+
+ private FestcGUI parent;
+ private FestcApplication app;
+ private ManFileModFields fields;
+
+ private JRadioButton applicationBtn, spinupBtn;
+ private boolean isSpinup = false;
+
+ public ManFileModPanel(FestcApplication application) {
+ app = application;
+ msg = app.getMessageCenter();
+ epicVer = Constants.getProperty(Constants.EPIC_VER, msg).trim();
+ fields = new ManFileModFields();
+ app.getProject().addPage(fields);
+ app.addPlotListener(this);
+ add(createPanel());
+ }
+
+ private JPanel createPanel() {
+ JPanel main = new JPanel();
+ init();
+ main.setLayout(new BoxLayout(main, BoxLayout.Y_AXIS));
+ main.add(getNorthPanel() );
+ main.add(getCenterPanel() );
+ main.add(getSouthPanel() );
+ main.add(messageBox());
+ return main;
+ }
+
+ private JPanel getNorthPanel() {
+ JPanel panel = new JPanel();
+ JLabel title = new JLabel(Constants.EDIT_INFILES, SwingConstants.CENTER);
+ title.setFont(new Font("Default", Font.BOLD, 20));
+
+ panel.add(title);
+ panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 10, 0));
+
+ return panel;
+ }
+
+ private JPanel getSouthPanel() {
+ return new JPanel();
+ }
+
+ private JPanel getCenterPanel() {
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+
+ //this.scenarioDir = new JTextField(40);
+
+ JPanel spinupPanel = new JPanel();
+ this.applicationBtn = new JRadioButton(applicationSelection());
+ this.spinupBtn = new JRadioButton(spinupSelection());
+ this.applicationBtn.setSelected(true);
+ this.spinupBtn.setSelected(false);
+ spinupPanel.add(this.spinupBtn);
+ spinupPanel.add(this.applicationBtn);
+
+ ButtonGroup btnGroup = new ButtonGroup();
+ btnGroup.add(this.spinupBtn);
+ btnGroup.add(this.applicationBtn);
+
+ JPanel cropsPanel = new JPanel(new BorderLayout());
+ cropsPanel.add(new JLabel("Crops/Grasses"), BorderLayout.NORTH);
+ lstCrops = new JList(Constants.CROPS.keySet().toArray());
+ lstCrops.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
+ lstCrops.setVisibleRowCount(20);
+ JScrollPane scrollCropList = new JScrollPane(lstCrops);
+ scrollCropList.setPreferredSize(new Dimension(120, 220));
+ cropsPanel.add(scrollCropList, BorderLayout.SOUTH);
+
+ JPanel leftPanel = new JPanel();
+ leftPanel.add(cropsPanel);
+
+ layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
+ layout.addLabelWidgetPair(indent + "Simulation Type:", spinupPanel, panel);
+ layout.addLabelWidgetPair(" ", new JLabel(" "), panel);
+ layout.addWidgetPair(leftPanel, rightPanel(), panel);
+
+ layout.makeCompactGrid(panel, 4, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+
+ return panel;
+ }
+
+ private JPanel rightPanel(){
+ JPanel rightPanel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+
+ JPanel contPanel = new JPanel();
+ JButton vcontButton = new JButton(viewAction("cont"));
+ JButton econtButton = new JButton(editAction("cont"));
+ contPanel.add(vcontButton);
+ contPanel.add(econtButton);
+ JPanel paramPanel = new JPanel();
+ JButton vparamButton = new JButton(viewAction("param"));
+ JButton eparamButton = new JButton(editAction("param"));
+ paramPanel.add(vparamButton);
+ paramPanel.add(eparamButton);
+ JPanel filePanel = new JPanel();
+ JButton vfileButton = new JButton(viewAction("file"));
+ JButton efileButton = new JButton(editAction("file"));
+ filePanel.add(vfileButton);
+ filePanel.add(efileButton);
+ JPanel irrPanel = new JPanel();
+ JButton virrButton = new JButton(viewAction("irr"));
+ JButton eirrButton = new JButton(editAction("irr"));
+ irrPanel.add(virrButton);
+ irrPanel.add(eirrButton);
+ JPanel rainPanel = new JPanel();
+ JButton vrainButton = new JButton(viewAction("rain"));
+ JButton erainButton = new JButton(editAction("rain"));
+ rainPanel.add(vrainButton);
+ rainPanel.add(erainButton);
+
+ layout.addLabelWidgetPair("EPICCONT.DAT", contPanel, rightPanel);
+ if ( epicVer.equalsIgnoreCase("1102") )
+ layout.addLabelWidgetPair("PARM1102.DAT", paramPanel, rightPanel);
+ else
+ layout.addLabelWidgetPair("PARM0509.DAT", paramPanel, rightPanel);
+ layout.addLabelWidgetPair("EPICFILE.DAT", filePanel, rightPanel);
+
+ layout.addLabelWidgetPair("RAINFED EPICRUNFILE", rainPanel, rightPanel);
+ layout.addLabelWidgetPair("IRRIGATED EPICRUNFILE", irrPanel, rightPanel);
+
+ layout.makeCompactGrid(rightPanel, 5, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 50, 12); // x and y pading
+
+ return rightPanel;
+ }
+
+ public void setParent(FestcGUI parent) {
+ this.parent = parent;
+ }
+
+ public Action viewAction(final String name){
+ return new AbstractAction("View"){
+ /**
+ *
+ */
+ private static final long serialVersionUID = 1L;
+
+ public void actionPerformed(ActionEvent e) {
+ if (validateFields()){
+
+ String file = getFile(name);
+ String title = "View: " + file;
+
+ ViewFileDialog dialog = new ViewFileDialog(parent.getFrame(), title, new File(file), false);
+ dialog.setVisible(true);
+ }
+
+ }
+ };
+ }
+
+ public Action editAction(final String name){
+ return new AbstractAction("Edit"){
+ public void actionPerformed(ActionEvent e) {
+ if ( validateFields()) {
+ String file = getFile(name);
+ String title = "Edit: " + file;
+ ViewFileDialog dialog = new ViewFileDialog(parent.getFrame(), title, new File(file), true);
+ dialog.setVisible(true);
+ }
+ }
+ };
+ }
+
+
+ private String getFile(String name){
+ String file="";
+ if ( name.equalsIgnoreCase("cont"))
+ file = contFile;
+ else if ( name.equalsIgnoreCase("param"))
+ file = paramFile;
+ else if ( name.equalsIgnoreCase("file"))
+ file = fileFile;
+ else if ( name.equalsIgnoreCase("irr"))
+ file = irrFile;
+ else if ( name.equalsIgnoreCase("rain"))
+ file = rainFile;
+ return file;
+ }
+
+ private boolean validateFields(){
+ String type = "";
+ if ( isSpinup )
+ type = "spinup";
+ else
+ type = "app";
+
+ baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ baseDir = baseDir.trim();
+ if (baseDir == null || baseDir.isEmpty()) {
+ app.showMessage("Utilities", "Base dir is empty, please specify it in the configuration file!");
+ return false;
+ }
+
+ scenDir = this.scenarioDir.getText();
+ if (scenDir == null || scenDir.isEmpty()) {
+ app.showMessage("Utilities", "Scenario dir is empty!");
+ return false;
+ }
+
+ String selCrop = (String) lstCrops.getSelectedValue();
+ if ( selCrop == null || selCrop.trim().length() == 0) {
+ app.showMessage("View/Edit Files: ", "Please select a crop first!");
+ return false;
+ }
+ if ( selCrop.equalsIgnoreCase("POTATOES") && type.equalsIgnoreCase("spinup"))
+ contFile = baseDir + "/common_data/EPIC_model/" + type + "/EPICCONT_POTATOES.DAT";
+ else if ( type.equalsIgnoreCase("spinup"))
+ contFile = baseDir + "/common_data/EPIC_model/" + type + "/EPICCONT.DAT";
+ else
+ contFile = scenDir + "/share_data/EPICCONT.DAT";
+
+ if ( epicVer.equalsIgnoreCase("1102"))
+ paramFile = baseDir + "/compmon_data/EPIC_model/" + type + "/PARM1102.DAT";
+ else
+ paramFile = baseDir + "/compmon_data/EPIC_model/" + type + "/PARM0509.DAT";
+
+ fileFile = baseDir + "/common_data/EPIC_model/" + type + "/EPICFILE.DAT";
+ if (type.equalsIgnoreCase("spinup")) {
+ irrFile = scenDir + "/" + selCrop + "/" + type + "/manage/EPICRUNFILEIRR.DAT";
+ rainFile = scenDir + "/" + selCrop + "/" + type + "/manage/EPICRUNFILERAIN.DAT";
+ }
+ else {
+ irrFile = scenDir + "/" + selCrop + "/" + type + "/manage/EPICRUNFILEIRRDW.DAT";
+ rainFile = scenDir + "/" + selCrop + "/" + type + "/manage/EPICRUNFILERAINDW.DAT";
+ }
+ outMessages += "Epic base: " + baseDir + ls +ls;
+ outMessages += "Files: " + ls;
+ outMessages += contFile + ls;
+ outMessages += paramFile + ls;
+ outMessages += fileFile + ls;
+ outMessages += irrFile + ls;
+ outMessages += rainFile + ls;
+
+ runMessages.setText(outMessages);
+ return true;
+ }
+
+
+ private Action spinupSelection() {
+ return new AbstractAction("EPIC SPINUP") {
+ public void actionPerformed(ActionEvent e) {
+ processSpinup();
+ }
+
+ };
+ }
+
+ private Action applicationSelection() {
+ return new AbstractAction("EPIC APP") {
+ public void actionPerformed(ActionEvent e) {
+ processSpinup();
+ }
+
+ };
+ }
+
+ private void processSpinup() {
+ if ( applicationBtn.isSelected()) {
+ isSpinup = false;
+ } else {
+ isSpinup = true;
+ }
+ validateFields();
+ }
+
+ @Override
+ public void newProjectCreated() {
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ scenarioDir.setText(domain.getScenarioDir());
+ runMessages.setText("");
+ if ( fields == null ) {
+ fields = new ManFileModFields();
+ app.getProject().addPage(fields);
+ }
+ }
+
+ public void projectLoaded() {
+ fields = (ManFileModFields) app.getProject().getPage(fields.getName());
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ if ( fields != null ){
+ String scenloc = domain.getScenarioDir();
+ if (scenloc != null && scenloc.trim().length()>0 )
+ this.scenarioDir.setText(scenloc);
+ else
+ this.scenarioDir.setText(fields.getScenarioDir());
+ if ( fields.getMessage() != null )
+ runMessages.setText(fields.getMessage());
+ else
+ runMessages.setText("");
+ }
+ else{
+ newProjectCreated();
+ }
+ }
+
+ public void saveProjectRequested() {
+ if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
+ if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
+ if ( runMessages != null ) fields.setMessage(runMessages.getText().trim());
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/gui/Mcip2EpicPanel.java b/festc_core/src/gov/epa/festc/gui/Mcip2EpicPanel.java
index 9c7bd71..146ac68 100644
--- a/festc_core/src/gov/epa/festc/gui/Mcip2EpicPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/Mcip2EpicPanel.java
@@ -1,496 +1,641 @@
-package gov.epa.festc.gui;
-
-import java.awt.Font;
-import java.awt.event.ActionEvent;
-import java.io.BufferedWriter;
-import java.io.File;
-import java.io.FileWriter;
-import java.io.IOException;
-import java.text.NumberFormat;
-import java.text.ParseException;
-import java.text.SimpleDateFormat;
-import java.util.Date;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.BorderFactory;
-import javax.swing.BoxLayout;
-import javax.swing.JButton;
-import javax.swing.JComboBox;
-import javax.swing.JFileChooser;
-import javax.swing.JFormattedTextField;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JTextField;
-import javax.swing.SpringLayout;
-import javax.swing.SwingConstants;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.core.proj.DomainFields;
-import gov.epa.festc.core.proj.Mcip2EpicFields;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.FileRunner;
-import gov.epa.festc.util.SpringLayoutGenerator;
-import simphony.util.messages.MessageCenter;
-
-public class Mcip2EpicPanel extends UtilFieldsPanel implements PlotEventListener {
- private static final long serialVersionUID = -1426530506543484237L;
- private JTextField mdataDir;
- private JButton dataDirBrowser;
-
- private MessageCenter msg;
- private JFormattedTextField startDate;
- private JFormattedTextField endDate;
-
- private JComboBox depositionSel;
- private JTextField depositionDir;
- private JButton depositionDirBrowser;
-
- private FestcApplication app;
- private Mcip2EpicFields fields;
-
- public Mcip2EpicPanel(FestcApplication festcApp) {
- app = festcApp;
- msg = app.getMessageCenter();
- fields = new Mcip2EpicFields();
- app.getProject().addPage(fields);
- app.addPlotListener(this);
- add(createPanel());
- }
-
- private JPanel createPanel() {
- init();
- JPanel mainPanel = new JPanel();
- mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
- mainPanel.add(getNorthPanel());
- mainPanel.add(getCenterPanel());
- mainPanel.add(getSouthPanel());
- mainPanel.add(messageBox());
- return mainPanel;
- }
-
- private JPanel getNorthPanel() {
- JPanel panel = new JPanel();
- JLabel title = new JLabel(Constants.MC2EPIC, SwingConstants.CENTER);
- title.setFont(new Font("Default", Font.BOLD, 20));
-
- panel.add(title);
- panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 20, 0));
-
- return panel;
- }
-
- private JPanel getSouthPanel() {
- JPanel panel = new JPanel();
- JButton display = new JButton(runAction());
- panel.add(display);
-
- panel.setBorder(BorderFactory.createEmptyBorder(30, 0, 10, 0));
-
- return panel;
- }
-
- private JPanel getCenterPanel() {
- JPanel panel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
- JPanel dataDirPanel = new JPanel();
- mdataDir = new JTextField(40);
- dataDirBrowser = new JButton(browseDirAction("MCIP data dir", mdataDir));
- dataDirPanel.add(mdataDir);
- dataDirPanel.add(dataDirBrowser);
-
- JPanel deposSPanel = new JPanel();
- depositionSel = new JComboBox(Constants.DEPSELECTIONS);
- depositionSel.setSelectedIndex(0);
- depositionSel.addActionListener(selectAction());
- deposSPanel.add(depositionSel);
-
- JPanel deposDirPanel = new JPanel();
- depositionDir = new JTextField(40);
- depositionDirBrowser = new JButton(browseDirAction("CMAQ deposition dir", depositionDir));
- deposDirPanel.add(depositionDir);
- deposDirPanel.add(depositionDirBrowser);
-
- JPanel startDatePanel = new JPanel();
- NumberFormat snf = NumberFormat.getNumberInstance();
- snf.setGroupingUsed(false);
- startDate = new JFormattedTextField(snf);
- startDate.setColumns(40);
- startDatePanel.add(startDate);
-
- JPanel endDatePanel = new JPanel();
- NumberFormat enf = NumberFormat.getNumberInstance();
- enf.setGroupingUsed(false);
- endDate = new JFormattedTextField(enf);
- endDate.setColumns(40);
- endDatePanel.add(endDate);
-
- layout.addLabelWidgetPair("Grid Description:", getGridDescPanel(false), panel);
- layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
- layout.addLabelWidgetPair("Start Date (YYYYMMDD):", startDatePanel, panel);
- layout.addLabelWidgetPair("End Date (YYYYMMDD):", endDatePanel, panel);
- layout.addLabelWidgetPair("MCIP Data Directory:", dataDirPanel, panel);
- layout.addLabelWidgetPair("Deposition Selection: ", deposSPanel, panel);
- layout.addLabelWidgetPair("CMAQ Deposition Directory:", deposDirPanel, panel);
-
- layout.makeCompactGrid(panel, 7, 2, // number of rows and cols
- 10, 10, // initial X and Y
- 5, 5); // x and y pading
-
- return panel;
- }
-
- private AbstractAction selectAction() {
- return new AbstractAction() {
- public void actionPerformed( ActionEvent arg0) {
- if ( depositionSel.getSelectedItem() != null ) {
- if ( (depositionSel.getSelectedItem()).equals("CMAQ deposition directory")) {
- depositionDirBrowser.setEnabled(true);
- depositionDir.setEditable(true);
- }else{
- depositionDirBrowser.setEnabled(false);
- depositionDir.setEditable(false);
- }
- }
- }
- };
- }
-
-
- private Action runAction() {
- return new AbstractAction("Run") {
- private static final long serialVersionUID = 8573618661168062193L;
-
- public void actionPerformed(ActionEvent e) {
- try {
- generateRunScript();
- } catch (Exception exc) {
- app.showMessage("Write script", exc.getMessage());
- }
- }
- };
- }
-
- private Action browseDirAction(final String name, final JTextField text) {
- return new AbstractAction("Browse...") {
- private static final long serialVersionUID = 482845697751457179L;
-
- public void actionPerformed(ActionEvent e) {
- JFileChooser chooser;
- File file = new File(text.getText());
-
- if (file != null && file.isFile()) {
- chooser = new JFileChooser(file.getParentFile());
- } else if (file != null && file.isDirectory()) {
- chooser = new JFileChooser(file);
- } else
- chooser = new JFileChooser(app.getCurrentDir());
-
- chooser.setDialogTitle("Please select the " + name);
- chooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
-
- int option = chooser.showDialog(Mcip2EpicPanel.this,
- "Select");
- if (option == JFileChooser.APPROVE_OPTION) {
- File selected = chooser.getSelectedFile();
- text.setText("" + selected);
- app.setCurrentDir(selected);
- }
- }
- };
- }
-
- private void generateRunScript() throws Exception {
-
- String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- if (baseDir == null || baseDir.isEmpty())
- throw new Exception("Base dir is empty, please specify it in the configuration file!");
-
- String scenarioDir = this.scenarioDir.getText();
- validateScen(scenarioDir);
- validateGrids();
-
- String sahome = Constants.getProperty(Constants.SA_HOME, msg);
- if (sahome == null || sahome.trim().isEmpty() || !(new File(sahome).exists()))
- throw new Exception("SA dir is empty, please specify it in the configuration file!");
-
- if (!(new File(mdataDir.getText()).exists()))
- throw new Exception("MCIP data directory is invalid.");
-
- if ( (depositionSel.getSelectedItem()).equals("CMAQ deposition directory")) {
- if (!(new File(depositionDir.getText()).exists()))
- throw new Exception("CMAQ deposition directory is invalid.");
-
- }
-
- String start = startDate.getText();
- if (start == null || start.trim().isEmpty())
- throw new Exception("Start date field is empty.");
-
- if (start.trim().length() != 8)
- throw new Exception("Start date value is invalid.");
-
- if (start.trim().charAt(0) == '0')
- throw new Exception("Start date value is invalid.");
-
- String end = endDate.getText();
- if (end == null || end.trim().isEmpty())
- throw new Exception("End date field is empty.");
-
- if (end.trim().length() != 8)
- throw new Exception("End date value is invalid.");
-
- if (end.trim().charAt(0) == '0')
- throw new Exception("End date value is invalid.");
-
- outMessages += "Epic base: " + baseDir + ls;
- outMessages += "SA home: " + sahome + ls;
- outMessages += "Scen directory: " + scenarioDir + ls;
-
- final String file = writeRunScriptScript(baseDir, scenarioDir, sahome);
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- runScript(file);
- }
- });
- populateThread.start();
- }
-
- protected String writeRunScriptScript(
- String baseDir,
- String scenarioDir,
- String sahome ) throws Exception {
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or java.sql.Timestamp!
-
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
-
- String file = scenarioDir.trim() + "/scripts";
- file += "/generateEPICsiteDailyWeatherfromMCIP_CAMQ_" + timeStamp + ".csh";
-
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
-
- sb.append(getScriptHeader() + ls);
- sb.append("#" + ls + "# Set up runtime environment" + ls + "#" + ls);
- sb.append("source " + sahome.trim() + Constants.SA_SETUP_FILE + ls + ls);
-
- sb.append("setenv EPIC_DIR " + baseDir + ls);
- sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv SA_HOME " + sahome +ls);
- sb.append("source $SA_HOME/"+ Constants.SA_SETUP_FILE + ls + ls);
-
- sb.append("#" + ls + "# Define MCIP domain grid information" + ls + "#" + ls);
- sb.append("setenv GRID_PROJ \"" + proj4proj.getText().trim() + "\"" + ls + ls);
- sb.append("setenv GRID_ROWS " + ((Number)rows.getValue()).intValue() + ls);
- sb.append("setenv GRID_COLUMNS " + ((Number)cols.getValue()).intValue() + ls + ls);
- sb.append("setenv GRID_XMIN " + ((Number)xmin.getValue()).doubleValue() + ls);
- sb.append("setenv GRID_YMIN " + ((Number)ymin.getValue()).doubleValue() + ls + ls);
- sb.append("setenv GRID_XCELLSIZE " + ((Number)xSize.getValue()).doubleValue() + ls);
- sb.append("setenv GRID_YCELLSIZE " + ((Number)ySize.getValue()).doubleValue() + ls + ls);
- sb.append("setenv GRID_NAME \"" + (gridName.getText() == null ? "" : gridName.getText().trim()) + "\"" + ls + ls);
- sb.append("#" + ls
- + "#Set MCIP data directory which containts daily MCIP files" + ls
- + "#Daily MCIP data files have to have names with METCRO2D*\"date\"" + ls
- + "#The \"date\" can be in one of the format: YYYYMMDD, YYMMDD, YYYYDDD, YYDDD" + ls
- + "#" + ls);
-
- sb.append("setenv DATA_DIR \"" + mdataDir.getText() + "\"" + ls + ls);
- sb.append("#" + ls
- + "#Set CMAQ output dry/wet deposition data directory which containts daily CMAQ files" + ls
- + "#" + ls);
-
- String dataDirCmaq = "";
- if ( depositionSel.getSelectedItem().equals("Zero") )
- dataDirCmaq = "Zero";
- else if ( depositionSel.getSelectedItem().equals("Default") )
- dataDirCmaq = "Default";
- else
- dataDirCmaq = depositionDir.getText().trim();
- sb.append("setenv DATA_DIR_CMAQ \"" + dataDirCmaq + "\"" + ls + ls);
- sb.append("#" + ls + "#Set date range: YYYYMMDD" + ls + "#" + ls);
- sb.append("setenv START_DATE " + startDate.getText() + ls);
- sb.append("setenv END_DATE " + endDate.getText() + ls + ls);
- sb.append("#" + ls + "#Set input EPIC site data file in ascii csv format as: site_name,longitude,latitude" + ls + "#" + ls);
- sb.append("setenv EPIC_SITE_FILE \"$SCEN_DIR/share_data/allSites_Info.csv" + "\"" + ls + ls);
- sb.append("#" + ls + "# Set output directory which will store created EPIC site daily weather files:" + ls
- + "# 1. \"site_name\".dly 2. WXPMRUN.DAT " + ls + "#" + ls);
-
- sb.append("setenv OUTPUT_DATA_DIR $SCEN_DIR/share_data/ " + ls + ls);
- sb.append("#" + ls
- + "# Set NetCDF output file to store computed EPIC site daily weather and N deposition data" + ls
- + "# Only set this variable when EPIC grids are the same as MCIP/CMAQ grids." + ls
- + "# Otherwise, set it to NONE for no NetCDF file output" + ls
- + "#" + ls);
- sb.append("setenv OUTPUT_NETCDF_FILE $SCEN_DIR/share_data/site_weather_dep_${START_DATE}_to_${END_DATE}.nc"+ ls + ls);
- sb.append("$SA_HOME/bin/64bits/computeSiteDailyWeather.exe" + ls + ls);
-
- sb.append(" if ( $status == 0 ) then " + ls);
- sb.append(" echo ==== Finished MCIP/CMAQ to EPIC run. " + ls);
- sb.append(" else " + ls);
- sb.append(" echo ==== Error in MCIP/CMAQ to EPIC runs." + ls + ls);
- sb.append(" echo " + ls );
- sb.append(" endif " + ls);
- sb.append("#===================================================================" + ls);
-
- String mesg = "";
- try {
- File script = new File(file);
-
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
-
- mesg += "Created a script file: " + file + "\n";
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
- } catch (IOException e) {
- throw new Exception(e.getMessage());
- }
- app.showMessage("Write script", mesg);
- return file;
- }
-
- private String getScriptHeader() {
- StringBuilder sb = new StringBuilder();
- String ls = "\n";
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to extract six daily weather variable data from MCIP data for EPIC modeling" + ls);
- sb.append("# sites and to create WXPMRUN.DAT run data file for WXPM3020 to compute" + ls);
- sb.append("# monthly climate data." + ls);
- sb.append("#" + ls);
- sb.append("# 1. Radiation (MJ m^02, daily total)" + ls);
- sb.append("# 2. Tmax (C, daily)" + ls);
- sb.append("# 3. Tmin (C, daily)" + ls);
- sb.append("# 4. Precipitation (mm, daily total)" + ls);
- sb.append("# 5. Relative humidity (fraction, daily average)" + ls);
- sb.append("# 6. Windspeed (m s^-1, daily average)" + ls);
- sb.append("" + ls);
- sb.append("# There are three steps involved in extraction:" + ls);
- sb.append("# 1. read in EPIC site lat and long location data, project them into MCIP data projection and" + ls);
- sb.append("# convert them into column and row in MCIP grids." + ls);
- sb.append("# 2. loop through each day MCIP data to extract daily weather variables for each EPIC site" + ls);
- sb.append("# and to write them into each EPIC site daily weather file." + ls);
- sb.append("# 3. created WXPMRUN.DAT file for all generated EPIC daily weather files in order to run WXPM3020.DRB program." + ls);
- sb.append("# The program computes monthly weather data to be named in monthly weather list file like WPM1US.DAT." + ls);
- sb.append("#" + ls);
- sb.append("# Output files:" + ls);
- sb.append("# 1. \"site_name\".dly - EPIC daily weather input file " + ls);
- sb.append("# 2. WXPMRUN.DAT - to WXPM3020.DRB for computing EPIC monthly weather" + ls);
- sb.append("#" + ls);
- sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
- sb.append("# in support of the EPA CMAS Modeling, 2009." + ls);
- sb.append("#" + ls);
- sb.append("# Written by: L. R., Aug. 2009" + ls);
- sb.append("# Modified by:" + ls);
- sb.append("#" + ls);
- sb.append("# Call program: computeSiteDailyWeather.exe" + ls);
- sb.append("# Needed environment variables listed in this run script file." + ls);
- sb.append("#" + ls);
- sb.append("# Usage: ./generateEPICsiteDailyWeatherfromMCIP.csh" + ls);
-
- sb.append("#***************************************************************************************" + ls + ls);
-
- return sb.toString();
- }
-
- private void runScript(final String file) {
- String log = file + ".log";
-
- outMessages += "Script file: " + file + ls;
- outMessages += "Log file: " + log + ls;
- runMessages.setText(outMessages);
- runMessages.validate();
- FileRunner.runScript(file, log, msg);
- }
-
- @Override
- public void projectLoaded() {
- fields = (Mcip2EpicFields) app.getProject().getPage(fields.getName());
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if ( fields != null ){
- String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length()>0 )
- this.scenarioDir.setText(scenloc);
- else
- this.scenarioDir.setText(fields.getScenarioDir());
- rows.setValue(fields.getRows());
- cols.setValue(fields.getCols());
- xSize.setValue(fields.getXcellSize());
- ySize.setValue(fields.getYcellSize());
- xmin.setValue(fields.getXmin());
- ymin.setValue(fields.getYmin());
- proj4proj.setText(fields.getProj());
-
- if ( fields.getGridName() != null ) this.gridName.setText(fields.getGridName());
- try {
- startDate.setValue(NumberFormat.getNumberInstance().parse(fields.getStartdate()==null? "":fields.getStartdate()));
- endDate.setValue(NumberFormat.getNumberInstance().parse(fields.getEnddate()==null? "":fields.getEnddate()));
- } catch (ParseException e) {
- //NOTE: no-op;
- }
- mdataDir.setText(fields.getDatadir());
- depositionSel.setSelectedItem(fields.getDepSelection());
- depositionDir.setText(fields.getCmaqDepsDir());
- this.runMessages.setText(fields.getMessage());
- } else{
- newProjectCreated();
- }
-
- }
-
- @Override
- public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText()== null? "" : scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( rows != null ) fields.setRows(Integer.parseInt(rows.getText() == null? "" : rows.getValue()+""));
- if ( cols != null ) fields.setCols(Integer.parseInt(cols.getText() == null? "" : cols.getValue()+""));
- if ( xSize != null ) fields.setXcellSize(Float.parseFloat(xSize.getText() == null? "" : xSize.getValue()+""));
- if ( ySize != null ) fields.setYcellSize(Float.parseFloat(ySize.getText() == null? "" : ySize.getValue()+""));
- if ( xmin != null ) fields.setXmin(Float.parseFloat(xmin.getText() == null? "" : xmin.getValue()+""));
- if ( ymin != null ) fields.setYmin(Float.parseFloat(ymin.getText() == null? "" : ymin.getValue()+""));
- if ( proj4proj != null ) fields.setProj(proj4proj.getText() == null? "" : proj4proj.getText());
- if ( gridName != null ) fields.setGridName(gridName.getText()== null? "" : gridName.getText());
- if (startDate != null) fields.setStartdate(startDate.getValue()== null? "" : startDate.getText());
- if (endDate != null) fields.setEnddate(endDate.getValue()== null? "" : endDate.getText());
-
- if (depositionSel != null) fields.setDepSelection((String)depositionSel.getSelectedItem());
- if (depositionDir != null) fields.setCmaqDepsDir(depositionDir.getText());
- if (mdataDir != null) fields.setDatadir(mdataDir.getText());
- if ( runMessages != null ) fields.setMessage(runMessages.getText());
- }
-
- @Override
- public void newProjectCreated() {
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- scenarioDir.setText(domain.getScenarioDir());
- rows.setValue(domain.getRows());
- cols.setValue(domain.getCols());
- xmin.setValue(domain.getXmin());
- ymin.setValue(domain.getYmin());
- xSize.setValue(domain.getXcellSize());
- ySize.setValue(domain.getYcellSize());
- proj4proj.setText(domain.getProj());
-
- gridName.setText(domain.getGridName());
- mdataDir.setText("");
- depositionSel.setSelectedItem(0);
- depositionDir.setText("");
-
- this.runMessages.setText("");
- try {
- startDate.setValue(NumberFormat.getNumberInstance().parse(domain.getSimYear().trim()+ "0101"));
- endDate.setValue(NumberFormat.getNumberInstance().parse(domain.getSimYear().trim()+ "1231"));
- } catch (ParseException e) {
- startDate.setValue(0);
- endDate.setValue(0);
- }
- if ( fields == null ) {
- fields = new Mcip2EpicFields();
- app.getProject().addPage(fields);
- }
- }
-
-}
+package gov.epa.festc.gui;
+
+import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.text.NumberFormat;
+import java.text.ParseException;
+import java.text.SimpleDateFormat;
+import java.util.Date;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.BoxLayout;
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JComboBox;
+import javax.swing.JFileChooser;
+import javax.swing.JFormattedTextField;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JTextField;
+import javax.swing.SpringLayout;
+import javax.swing.SwingConstants;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.proj.DomainFields;
+import gov.epa.festc.core.proj.Mcip2EpicFields;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.FileRunner;
+import gov.epa.festc.util.SpringLayoutGenerator;
+import simphony.util.messages.MessageCenter;
+
+public class Mcip2EpicPanel extends UtilFieldsPanel implements PlotEventListener {
+ private static final long serialVersionUID = -1426530506543484237L;
+ private JTextField mdataDir;
+ private JButton dataDirBrowser;
+
+ private MessageCenter msg;
+ private JFormattedTextField startDate;
+ private JFormattedTextField endDate;
+
+ private JComboBox depositionSel;
+ private JTextField depositionDir;
+ private JButton depositionDirBrowser;
+
+ private JCheckBox dlyBox;
+
+ private FestcApplication app;
+ private Mcip2EpicFields fields;
+
+ public Mcip2EpicPanel(FestcApplication festcApp) {
+ app = festcApp;
+ msg = app.getMessageCenter();
+ fields = new Mcip2EpicFields();
+ app.getProject().addPage(fields);
+ app.addPlotListener(this);
+ add(createPanel());
+ }
+
+ private JPanel createPanel() {
+ init();
+ JPanel mainPanel = new JPanel();
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
+ mainPanel.add(getNorthPanel());
+ mainPanel.add(getCenterPanel());
+ mainPanel.add(getSouthPanel());
+ mainPanel.add(messageBox());
+ return mainPanel;
+ }
+
+ private JPanel getNorthPanel() {
+ JPanel panel = new JPanel();
+ JLabel title = new JLabel(Constants.MC2EPIC, SwingConstants.CENTER);
+ title.setFont(new Font("Default", Font.BOLD, 20));
+
+ panel.add(title);
+ panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 20, 0));
+
+ return panel;
+ }
+
+ private JPanel getSouthPanel() {
+ JPanel panel = new JPanel();
+ JButton display = new JButton(runAction());
+ panel.add(display);
+
+ panel.setBorder(BorderFactory.createEmptyBorder(30, 0, 10, 0));
+
+ return panel;
+ }
+
+ private JPanel getCenterPanel() {
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+
+ JPanel dataDirPanel = new JPanel();
+ mdataDir = new JTextField(40);
+ dataDirBrowser = new JButton(browseDirAction("MCIP data dir", mdataDir));
+ dataDirPanel.add(mdataDir);
+ dataDirPanel.add(dataDirBrowser);
+
+ JPanel deposSPanel = new JPanel();
+ depositionSel = new JComboBox(Constants.DEPSELECTIONS);
+ depositionSel.setSelectedIndex(0);
+ depositionSel.addActionListener(selectAction());
+ deposSPanel.add(depositionSel);
+
+ JPanel deposDirPanel = new JPanel();
+ depositionDir = new JTextField(40);
+ depositionDirBrowser = new JButton(browseDirAction("CMAQ deposition dir", depositionDir));
+ deposDirPanel.add(depositionDir);
+ deposDirPanel.add(depositionDirBrowser);
+
+ JPanel startDatePanel = new JPanel();
+ NumberFormat snf = NumberFormat.getNumberInstance();
+ snf.setGroupingUsed(false);
+ startDate = new JFormattedTextField(snf);
+ startDate.setColumns(40);
+ startDatePanel.add(startDate);
+
+ JPanel endDatePanel = new JPanel();
+ NumberFormat enf = NumberFormat.getNumberInstance();
+ enf.setGroupingUsed(false);
+ endDate = new JFormattedTextField(enf);
+ endDate.setColumns(40);
+ endDatePanel.add(endDate);
+
+ JPanel dlyPanel = new JPanel();
+ this.dlyBox = new JCheckBox("", false);
+ dlyPanel.add(this.dlyBox);
+
+ layout.addLabelWidgetPair("Grid Description:", getGridDescPanel(false), panel);
+ layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
+ layout.addLabelWidgetPair("Start Date (YYYYMMDD):", startDatePanel, panel);
+ layout.addLabelWidgetPair("End Date (YYYYMMDD):", endDatePanel, panel);
+ layout.addLabelWidgetPair("MCIP Data Directory:", dataDirPanel, panel);
+ layout.addLabelWidgetPair("Deposition Selection: ", deposSPanel, panel);
+ layout.addLabelWidgetPair("CMAQ Deposition Directory:", deposDirPanel, panel);
+ layout.addLabelWidgetPair("Output DLY Files:", dlyPanel, panel);
+
+ layout.makeCompactGrid(panel, 8, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+
+ return panel;
+ }
+
+ private AbstractAction selectAction() {
+ return new AbstractAction() {
+ public void actionPerformed(ActionEvent arg0) {
+ if (depositionSel.getSelectedItem() != null) {
+ if ((depositionSel.getSelectedItem()).equals("CMAQ deposition directory")) {
+ depositionDirBrowser.setEnabled(true);
+ depositionDir.setEditable(true);
+ } else {
+ depositionDirBrowser.setEnabled(false);
+ depositionDir.setEditable(false);
+ }
+ }
+ }
+ };
+ }
+
+ private Action runAction() {
+ return new AbstractAction("Run") {
+ private static final long serialVersionUID = 8573618661168062193L;
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+ generateRunScript();
+ } catch (Exception exc) {
+ app.showMessage("Write script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private Action browseDirAction(final String name, final JTextField text) {
+ return new AbstractAction("Browse...") {
+ private static final long serialVersionUID = 482845697751457179L;
+
+ public void actionPerformed(ActionEvent e) {
+ JFileChooser chooser;
+ File file = new File(text.getText());
+
+ if (file != null && file.isFile()) {
+ chooser = new JFileChooser(file.getParentFile());
+ } else if (file != null && file.isDirectory()) {
+ chooser = new JFileChooser(file);
+ } else
+ chooser = new JFileChooser(app.getCurrentDir());
+
+ chooser.setDialogTitle("Please select the " + name);
+ chooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
+
+ int option = chooser.showDialog(Mcip2EpicPanel.this, "Select");
+ if (option == JFileChooser.APPROVE_OPTION) {
+ File selected = chooser.getSelectedFile();
+ text.setText("" + selected);
+ app.setCurrentDir(selected);
+ }
+ }
+ };
+ }
+
+ private void generateRunScript() throws Exception {
+
+ String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ if (baseDir == null || baseDir.isEmpty())
+ throw new Exception("Base dir is empty, please specify it in the configuration file!");
+
+ String scenarioDir = this.scenarioDir.getText();
+ validateScen(scenarioDir);
+ validateGrids();
+
+ String sahome = Constants.getProperty(Constants.SA_HOME, msg);
+ // if (sahome == null || sahome.trim().isEmpty() || !(new
+ // File(sahome).exists()))
+ if (sahome == null)
+ throw new Exception("SA dir is empty, please specify it in the configuration file!");
+
+ if (!(new File(mdataDir.getText()).exists()))
+ throw new Exception("MCIP data directory is invalid.");
+
+ if ((depositionSel.getSelectedItem()).equals("CMAQ deposition directory")) {
+ if (!(new File(depositionDir.getText()).exists()))
+ throw new Exception("CMAQ deposition directory is invalid.");
+
+ }
+
+ String start = startDate.getText();
+ if (start == null || start.trim().isEmpty())
+ throw new Exception("Start date field is empty.");
+
+ if (start.trim().length() != 8)
+ throw new Exception("Start date value is invalid.");
+
+ if (start.trim().charAt(0) == '0')
+ throw new Exception("Start date value is invalid.");
+
+ String end = endDate.getText();
+ if (end == null || end.trim().isEmpty())
+ throw new Exception("End date field is empty.");
+
+ if (end.trim().length() != 8)
+ throw new Exception("End date value is invalid.");
+
+ if (end.trim().charAt(0) == '0')
+ throw new Exception("End date value is invalid.");
+
+ outMessages += "Epic base: " + baseDir + ls;
+ outMessages += "SA home: " + sahome + ls;
+ outMessages += "Scen directory: " + scenarioDir + ls;
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+
+ final String jobFile = writeRunScriptScript(baseDir, scenarioDir, sahome);
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir);
+ } else {
+ batchFile = null;
+ }
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ // final String batchFile = writeBatchFile(jobFile,
+ // scenarioDir);
+ runBatchScript(batchFile, jobFile);
+ }
+
+ }
+ });
+ populateThread.start();
+ }
+
+ // This is legacy code that has been moved to it's own method
+ protected void writeScriptFile(String file, String content) {
+
+ String mesg = "";
+
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(content);
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ // printStackTrace();
+ // g.error("Error generating EPIC script file", e);
+ app.showMessage("Write script", e.getMessage());
+ }
+
+ app.showMessage("Write script", mesg);
+ }
+
+ protected String writeBatchFile(String jobFile, String scenarioDir) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitSiteDailyWeather" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
+
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+
+ protected String writeRunScriptScript(String baseDir, String scenarioDir, String sahome) throws Exception {
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+
+ String file = scenarioDir.trim() + "/scripts";
+ file += "/generateEPICsiteDailyWeatherfromMCIP_CAMQ_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+
+ sb.append(getScriptHeader() + ls);
+ sb.append("#" + ls + "# Set up runtime environment" + ls + "#" + ls);
+ sb.append("source " + sahome.trim() + Constants.SA_SETUP_FILE + ls + ls);
+
+ sb.append("setenv EPIC_DIR " + baseDir + ls);
+ sb.append("setenv SCEN_DIR " + scenarioDir + ls);
+ sb.append("setenv SA_HOME " + sahome + ls);
+ sb.append("source $SA_HOME/" + Constants.SA_SETUP_FILE + ls + ls);
+
+ sb.append("#" + ls + "# Define MCIP domain grid information" + ls + "#" + ls);
+ sb.append("setenv GRID_PROJ \"" + proj4proj.getText().trim() + "\"" + ls + ls);
+ sb.append("setenv GRID_ROWS " + ((Number) rows.getValue()).intValue() + ls);
+ sb.append("setenv GRID_COLUMNS " + ((Number) cols.getValue()).intValue() + ls + ls);
+ sb.append("setenv GRID_XMIN " + ((Number) xmin.getValue()).doubleValue() + ls);
+ sb.append("setenv GRID_YMIN " + ((Number) ymin.getValue()).doubleValue() + ls + ls);
+ sb.append("setenv GRID_XCELLSIZE " + ((Number) xSize.getValue()).doubleValue() + ls);
+ sb.append("setenv GRID_YCELLSIZE " + ((Number) ySize.getValue()).doubleValue() + ls + ls);
+ sb.append("setenv GRID_NAME \"" + (gridName.getText() == null ? "" : gridName.getText().trim()) + "\"" + ls
+ + ls);
+ sb.append("#" + ls + "#Set MCIP data directory which containts daily MCIP files" + ls
+ + "#Daily MCIP data files have to have names with METCRO2D*\"date\"" + ls
+ + "#The \"date\" can be in one of the format: YYYYMMDD, YYMMDD, YYYYDDD, YYDDD" + ls + "#" + ls);
+
+ sb.append("setenv DATA_DIR \"" + mdataDir.getText() + "\"" + ls + ls);
+ sb.append("#" + ls + "#Set CMAQ output dry/wet deposition data directory which containts daily CMAQ files" + ls
+ + "#" + ls);
+
+ String dataDirCmaq = "";
+ if (depositionSel.getSelectedItem().equals("Zero"))
+ dataDirCmaq = "Zero";
+ else if (depositionSel.getSelectedItem().equals("Default"))
+ dataDirCmaq = "Default";
+ else
+ dataDirCmaq = depositionDir.getText().trim();
+ sb.append("setenv DATA_DIR_CMAQ \"" + dataDirCmaq + "\"" + ls + ls);
+ sb.append("#" + ls + "#Set date range: YYYYMMDD" + ls + "#" + ls);
+ sb.append("setenv START_DATE " + startDate.getText() + ls);
+ sb.append("setenv END_DATE " + endDate.getText() + ls + ls);
+ sb.append("#" + ls + "#Set input EPIC site data file in ascii csv format as: site_name,longitude,latitude" + ls
+ + "#" + ls);
+ sb.append("setenv EPIC_SITE_FILE \"$SCEN_DIR/share_data/allSites_Info.csv" + "\"" + ls + ls);
+ sb.append("#" + ls + "# Set output directory which will store created EPIC site daily weather files:" + ls
+ + "# 1. \"site_name\".dly 2. WXPMRUN.DAT " + ls + "#" + ls);
+
+ sb.append("setenv OUTPUT_DATA_DIR $SCEN_DIR/share_data/ " + ls + ls);
+ sb.append("#" + ls + "# Set NetCDF output file to store computed EPIC site daily weather and N deposition data"
+ + ls + "# Only set this variable when EPIC grids are the same as MCIP/CMAQ grids." + ls
+ + "# Otherwise, set it to NONE for no NetCDF file output" + ls + "#" + ls);
+ sb.append("setenv OUTPUT_NETCDF_FILE $SCEN_DIR/share_data/site_weather_dep_${START_DATE}_to_${END_DATE}.nc"
+ + ls + ls);
+
+ String dlyYN = dlyBox.isSelected() ? "YES" : "NO";
+ sb.append("setenv WRITE_DLY " + dlyYN + ls);
+
+ sb.append("$SA_HOME/bin/64bits/computeSiteDailyWeather.exe" + ls + ls);
+
+ sb.append(" if ( $status == 0 ) then " + ls);
+ sb.append(" echo ==== Finished MCIP/CMAQ to EPIC run. " + ls);
+
+ sb.append(" cp $OUTPUT_NETCDF_FILE $SCEN_DIR/share_data/site_weather_dep.nc" + ls);
+
+ if (dlyBox.isSelected()) {
+ sb.append(" echo ==== Consolidating dly files. " + ls);
+ sb.append(
+ " (cd $SCEN_DIR/share_data/dailyWETH && tar -czf dly_${START_DATE}_to_${END_DATE}.tar.gz *.dly --remove-files)"
+ + ls);
+ }
+ // end if statement
+
+ sb.append(" else " + ls);
+ sb.append(" echo ==== Error in MCIP/CMAQ to EPIC runs." + ls + ls);
+ sb.append(" echo " + ls);
+ sb.append(" endif " + ls);
+ sb.append("#===================================================================" + ls);
+
+ String mesg = "";
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+
+ mesg += "Created a script file: " + file + "\n";
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+ } catch (IOException e) {
+ throw new Exception(e.getMessage());
+ }
+ app.showMessage("Write script", mesg);
+ return file;
+ }
+
+ private String getScriptHeader() {
+ StringBuilder sb = new StringBuilder();
+ String ls = "\n";
+ sb.append("#!/bin/csh -f" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to extract six daily weather variable data from MCIP data for EPIC modeling" + ls);
+ sb.append("# sites and to create WXPMRUN.DAT run data file for WXPM3020 to compute" + ls);
+ sb.append("# monthly climate data." + ls);
+ sb.append("#" + ls);
+ sb.append("# 1. Radiation (MJ m^02, daily total)" + ls);
+ sb.append("# 2. Tmax (C, daily)" + ls);
+ sb.append("# 3. Tmin (C, daily)" + ls);
+ sb.append("# 4. Precipitation (mm, daily total)" + ls);
+ sb.append("# 5. Relative humidity (fraction, daily average)" + ls);
+ sb.append("# 6. Windspeed (m s^-1, daily average)" + ls);
+ sb.append("" + ls);
+ sb.append("# There are three steps involved in extraction:" + ls);
+ sb.append("# 1. read in EPIC site lat and long location data, project them into MCIP data projection and"
+ + ls);
+ sb.append("# convert them into column and row in MCIP grids." + ls);
+ sb.append(
+ "# 2. loop through each day MCIP data to extract daily weather variables for each EPIC site" + ls);
+ sb.append("# and to write them into each EPIC site daily weather file." + ls);
+ sb.append(
+ "# 3. created WXPMRUN.DAT file for all generated EPIC daily weather files in order to run WXPM3020.DRB program."
+ + ls);
+ sb.append(
+ "# The program computes monthly weather data to be named in monthly weather list file like WPM1US.DAT."
+ + ls);
+ sb.append("#" + ls);
+ sb.append("# Output files:" + ls);
+ sb.append("# 1. \"site_name\".dly - EPIC daily weather input file " + ls);
+ sb.append("# 2. WXPMRUN.DAT - to WXPM3020.DRB for computing EPIC monthly weather" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by the Institute for the Environment at UNC, Chapel Hill" + ls);
+ sb.append("# in support of the EPA CMAS Modeling, 2009." + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by: L. R., Aug. 2009" + ls);
+ sb.append("# Modified by:" + ls);
+ sb.append("#" + ls);
+ sb.append("# Call program: computeSiteDailyWeather.exe" + ls);
+ sb.append("# Needed environment variables listed in this run script file." + ls);
+ sb.append("#" + ls);
+ sb.append("# Usage: ./generateEPICsiteDailyWeatherfromMCIP.csh" + ls);
+
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ return sb.toString();
+ }
+
+ private void runScript(final String file) {
+ String log = file + ".log";
+
+ outMessages += "Script file: " + file + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+ FileRunner.runScript(file, log, msg);
+ }
+
+ private void runBatchScript(final String batchFile, final String jobFile) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qMc2Epic = Constants.getProperty(Constants.QUEUE_MC2EPIC, msg);
+
+ File script = new File(batchFile.replaceAll("\\\\", "\\\\\\\\"));
+
+ sb.append(qcmd + " " + qMc2Epic + " -o " + log + " " + script.getAbsolutePath());
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
+ @Override
+ public void projectLoaded() {
+ fields = (Mcip2EpicFields) app.getProject().getPage(fields.getName());
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ if (fields != null) {
+ String scenloc = domain.getScenarioDir();
+ if (scenloc != null && scenloc.trim().length() > 0)
+ this.scenarioDir.setText(scenloc);
+ else
+ this.scenarioDir.setText(fields.getScenarioDir());
+ rows.setValue(fields.getRows());
+ cols.setValue(fields.getCols());
+ xSize.setValue(fields.getXcellSize());
+ ySize.setValue(fields.getYcellSize());
+ xmin.setValue(fields.getXmin());
+ ymin.setValue(fields.getYmin());
+ proj4proj.setText(fields.getProj());
+
+ if (fields.getGridName() != null)
+ this.gridName.setText(fields.getGridName());
+ try {
+ startDate.setValue(NumberFormat.getNumberInstance()
+ .parse(fields.getStartdate() == null ? "" : fields.getStartdate()));
+ endDate.setValue(
+ NumberFormat.getNumberInstance().parse(fields.getEnddate() == null ? "" : fields.getEnddate()));
+ } catch (ParseException e) {
+ // NOTE: no-op;
+ }
+ mdataDir.setText(fields.getDatadir());
+ depositionSel.setSelectedItem(fields.getDepSelection());
+ depositionDir.setText(fields.getCmaqDepsDir());
+ this.runMessages.setText(fields.getMessage());
+ } else {
+ newProjectCreated();
+ }
+
+ }
+
+ @Override
+ public void saveProjectRequested() {
+ if (scenarioDir != null)
+ domain.setScenarioDir(scenarioDir.getText() == null ? "" : scenarioDir.getText());
+ if (scenarioDir != null)
+ fields.setScenarioDir(scenarioDir.getText());
+ if (rows != null)
+ fields.setRows(Integer.parseInt(rows.getText() == null ? "" : rows.getValue() + ""));
+ if (cols != null)
+ fields.setCols(Integer.parseInt(cols.getText() == null ? "" : cols.getValue() + ""));
+ if (xSize != null)
+ fields.setXcellSize(Float.parseFloat(xSize.getText() == null ? "" : xSize.getValue() + ""));
+ if (ySize != null)
+ fields.setYcellSize(Float.parseFloat(ySize.getText() == null ? "" : ySize.getValue() + ""));
+ if (xmin != null)
+ fields.setXmin(Float.parseFloat(xmin.getText() == null ? "" : xmin.getValue() + ""));
+ if (ymin != null)
+ fields.setYmin(Float.parseFloat(ymin.getText() == null ? "" : ymin.getValue() + ""));
+ if (proj4proj != null)
+ fields.setProj(proj4proj.getText() == null ? "" : proj4proj.getText());
+ if (gridName != null)
+ fields.setGridName(gridName.getText() == null ? "" : gridName.getText());
+ if (startDate != null)
+ fields.setStartdate(startDate.getValue() == null ? "" : startDate.getText());
+ if (endDate != null)
+ fields.setEnddate(endDate.getValue() == null ? "" : endDate.getText());
+
+ if (depositionSel != null)
+ fields.setDepSelection((String) depositionSel.getSelectedItem());
+ if (depositionDir != null)
+ fields.setCmaqDepsDir(depositionDir.getText());
+ if (mdataDir != null)
+ fields.setDatadir(mdataDir.getText());
+ if (runMessages != null)
+ fields.setMessage(runMessages.getText());
+ }
+
+ @Override
+ public void newProjectCreated() {
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ scenarioDir.setText(domain.getScenarioDir());
+ rows.setValue(domain.getRows());
+ cols.setValue(domain.getCols());
+ xmin.setValue(domain.getXmin());
+ ymin.setValue(domain.getYmin());
+ xSize.setValue(domain.getXcellSize());
+ ySize.setValue(domain.getYcellSize());
+ proj4proj.setText(domain.getProj());
+
+ gridName.setText(domain.getGridName());
+ mdataDir.setText("");
+ depositionSel.setSelectedItem(0);
+ depositionDir.setText("");
+
+ this.runMessages.setText("");
+ try {
+ startDate.setValue(NumberFormat.getNumberInstance().parse(domain.getSimYear().trim() + "0101"));
+ endDate.setValue(NumberFormat.getNumberInstance().parse(domain.getSimYear().trim() + "1231"));
+ } catch (ParseException e) {
+ startDate.setValue(0);
+ endDate.setValue(0);
+ }
+ if (fields == null) {
+ fields = new Mcip2EpicFields();
+ app.getProject().addPage(fields);
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/PlotEventListener.java b/festc_core/src/gov/epa/festc/gui/PlotEventListener.java
index cfe1ecc..f6b07fc 100644
--- a/festc_core/src/gov/epa/festc/gui/PlotEventListener.java
+++ b/festc_core/src/gov/epa/festc/gui/PlotEventListener.java
@@ -1,9 +1,9 @@
-package gov.epa.festc.gui;
-
-public interface PlotEventListener {
- void newProjectCreated();
-
- void projectLoaded();
-
- void saveProjectRequested();
-}
+package gov.epa.festc.gui;
+
+public interface PlotEventListener {
+ void newProjectCreated();
+
+ void projectLoaded();
+
+ void saveProjectRequested();
+}
diff --git a/festc_core/src/gov/epa/festc/gui/ScrollablePanel.java b/festc_core/src/gov/epa/festc/gui/ScrollablePanel.java
index 8984bd5..bc488c7 100644
--- a/festc_core/src/gov/epa/festc/gui/ScrollablePanel.java
+++ b/festc_core/src/gov/epa/festc/gui/ScrollablePanel.java
@@ -1,376 +1,376 @@
-package gov.epa.festc.gui;
-
-import java.awt.*;
-
-import javax.swing.*;
-
-/**
- * A panel that implements the Scrollable interface. This class allows you
- * to customize the scrollable features by using newly provided setter methods
- * so you don't have to extend this class every time.
- *
- * Scrollable amounts can be specifed as a percentage of the viewport size or
- * as an actual pixel value. The amount can be changed for both unit and block
- * scrolling for both horizontal and vertical scrollbars.
- *
- * The Scrollable interface only provides a boolean value for determining whether
- * or not the viewport size (width or height) should be used by the scrollpane
- * when determining if scrollbars should be made visible. This class supports the
- * concept of dynamically changing this value based on the size of the viewport.
- * In this case the viewport size will only be used when it is larger than the
- * panels size. This has the effect of ensuring the viewport is always full as
- * components added to the panel will be size to fill the area available,
- * based on the rules of the applicable layout manager of course.
- */
-public class ScrollablePanel extends JPanel
- implements Scrollable, SwingConstants
-{
- public enum ScrollableSizeHint
- {
- NONE,
- FIT,
- STRETCH;
- }
-
- public enum IncrementType
- {
- PERCENT,
- PIXELS;
- }
-
- private ScrollableSizeHint scrollableHeight = ScrollableSizeHint.NONE;
- private ScrollableSizeHint scrollableWidth = ScrollableSizeHint.NONE;
-
- private IncrementInfo horizontalBlock;
- private IncrementInfo horizontalUnit;
- private IncrementInfo verticalBlock;
- private IncrementInfo verticalUnit;
-
- private Dimension maxSize;
- private Dimension preferedSize;
-
- /**
- * Default constructor that uses a FlowLayout
- */
- public ScrollablePanel()
- {
- this( new FlowLayout() );
- }
-
- /**
- * Constuctor for specifying the LayoutManager of the panel.
- *
- * @param layout the LayountManger for the panel
- */
- public ScrollablePanel(LayoutManager layout)
- {
- super( layout );
-
- IncrementInfo block = new IncrementInfo(IncrementType.PERCENT, 100);
- IncrementInfo unit = new IncrementInfo(IncrementType.PERCENT, 10);
-
- setScrollableBlockIncrement(HORIZONTAL, block);
- setScrollableBlockIncrement(VERTICAL, block);
- setScrollableUnitIncrement(HORIZONTAL, unit);
- setScrollableUnitIncrement(VERTICAL, unit);
-
- Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
- int maxWidth = (int) (screenSize.getWidth()*0.7);
- int maxHeight = (int) (screenSize.getHeight()*0.7);
- int preferedWidth = (int) (screenSize.getWidth()/3);
- int preferedHeight = (int) (screenSize.getHeight()/2);
- maxSize = new Dimension(maxWidth, maxHeight);
- preferedSize = new Dimension(preferedWidth, preferedHeight);
- }
-
- /**
- * Get the height ScrollableSizeHint enum
- *
- * @return the ScrollableSizeHint enum for the height
- */
- public ScrollableSizeHint getScrollableHeight()
- {
- return scrollableHeight;
- }
-
- /**
- * Set the ScrollableSizeHint enum for the height. The enum is used to
- * determine the boolean value that is returned by the
- * getScrollableTracksViewportHeight() method. The valid values are:
- *
- * ScrollableSizeHint.NONE - return "false", which causes the height
- * of the panel to be used when laying out the children
- * ScrollableSizeHint.FIT - return "true", which causes the height of
- * the viewport to be used when laying out the children
- * ScrollableSizeHint.STRETCH - return "true" when the viewport height
- * is greater than the height of the panel, "false" otherwise.
- *
- * @param scrollableHeight as represented by the ScrollableSizeHint enum.
- */
- public void setScrollableHeight(ScrollableSizeHint scrollableHeight)
- {
- this.scrollableHeight = scrollableHeight;
- revalidate();
- }
-
- /**
- * Get the width ScrollableSizeHint enum
- *
- * @return the ScrollableSizeHint enum for the width
- */
- public ScrollableSizeHint getScrollableWidth()
- {
- return scrollableWidth;
- }
-
- /**
- * Set the ScrollableSizeHint enum for the width. The enum is used to
- * determine the boolean value that is returned by the
- * getScrollableTracksViewportWidth() method. The valid values are:
- *
- * ScrollableSizeHint.NONE - return "false", which causes the width
- * of the panel to be used when laying out the children
- * ScrollableSizeHint.FIT - return "true", which causes the width of
- * the viewport to be used when laying out the children
- * ScrollableSizeHint.STRETCH - return "true" when the viewport width
- * is greater than the width of the panel, "false" otherwise.
- *
- * @param scrollableWidth as represented by the ScrollableSizeHint enum.
- */
- public void setScrollableWidth(ScrollableSizeHint scrollableWidth)
- {
- this.scrollableWidth = scrollableWidth;
- revalidate();
- }
-
- /**
- * Get the block IncrementInfo for the specified orientation
- *
- * @return the block IncrementInfo for the specified orientation
- */
- public IncrementInfo getScrollableBlockIncrement(int orientation)
- {
- return orientation == SwingConstants.HORIZONTAL ? horizontalBlock : verticalBlock;
- }
-
- /**
- * Specify the information needed to do block scrolling.
- *
- * @param orientation specify the scrolling orientation. Must be either:
- * SwingContants.HORIZONTAL or SwingContants.VERTICAL.
- * @paran type specify how the amount parameter in the calculation of
- * the scrollable amount. Valid values are:
- * IncrementType.PERCENT - treat the amount as a % of the viewport size
- * IncrementType.PIXEL - treat the amount as the scrollable amount
- * @param amount a value used with the IncrementType to determine the
- * scrollable amount
- */
- public void setScrollableBlockIncrement(int orientation, IncrementType type, int amount)
- {
- IncrementInfo info = new IncrementInfo(type, amount);
- setScrollableBlockIncrement(orientation, info);
- }
-
- /**
- * Specify the information needed to do block scrolling.
- *
- * @param orientation specify the scrolling orientation. Must be either:
- * SwingContants.HORIZONTAL or SwingContants.VERTICAL.
- * @param info An IncrementInfo object containing information of how to
- * calculate the scrollable amount.
- */
- public void setScrollableBlockIncrement(int orientation, IncrementInfo info)
- {
- switch(orientation)
- {
- case SwingConstants.HORIZONTAL:
- horizontalBlock = info;
- break;
- case SwingConstants.VERTICAL:
- verticalBlock = info;
- break;
- default:
- throw new IllegalArgumentException("Invalid orientation: " + orientation);
- }
- }
-
- /**
- * Get the unit IncrementInfo for the specified orientation
- *
- * @return the unit IncrementInfo for the specified orientation
- */
- public IncrementInfo getScrollableUnitIncrement(int orientation)
- {
- return orientation == SwingConstants.HORIZONTAL ? horizontalUnit : verticalUnit;
- }
-
- /**
- * Specify the information needed to do unit scrolling.
- *
- * @param orientation specify the scrolling orientation. Must be either:
- * SwingContants.HORIZONTAL or SwingContants.VERTICAL.
- * @paran type specify how the amount parameter in the calculation of
- * the scrollable amount. Valid values are:
- * IncrementType.PERCENT - treat the amount as a % of the viewport size
- * IncrementType.PIXEL - treat the amount as the scrollable amount
- * @param amount a value used with the IncrementType to determine the
- * scrollable amount
- */
- public void setScrollableUnitIncrement(int orientation, IncrementType type, int amount)
- {
- IncrementInfo info = new IncrementInfo(type, amount);
- setScrollableUnitIncrement(orientation, info);
- }
-
- /**
- * Specify the information needed to do unit scrolling.
- *
- * @param orientation specify the scrolling orientation. Must be either:
- * SwingContants.HORIZONTAL or SwingContants.VERTICAL.
- * @param info An IncrementInfo object containing information of how to
- * calculate the scrollable amount.
- */
- public void setScrollableUnitIncrement(int orientation, IncrementInfo info)
- {
- switch(orientation)
- {
- case SwingConstants.HORIZONTAL:
- horizontalUnit = info;
- break;
- case SwingConstants.VERTICAL:
- verticalUnit = info;
- break;
- default:
- throw new IllegalArgumentException("Invalid orientation: " + orientation);
- }
- }
-
-// Implement Scrollable interface
-
- public Dimension getPreferredScrollableViewportSize()
- {
- return preferedSize; //getPreferredSize();
- }
-
- public int getScrollableUnitIncrement(
- Rectangle visible, int orientation, int direction)
- {
- switch(orientation)
- {
- case SwingConstants.HORIZONTAL:
- return getScrollableIncrement(horizontalUnit, visible.width);
- case SwingConstants.VERTICAL:
- return getScrollableIncrement(verticalUnit, visible.height);
- default:
- throw new IllegalArgumentException("Invalid orientation: " + orientation);
- }
- }
-
- public int getScrollableBlockIncrement(
- Rectangle visible, int orientation, int direction)
- {
- switch(orientation)
- {
- case SwingConstants.HORIZONTAL:
- return getScrollableIncrement(horizontalBlock, visible.width);
- case SwingConstants.VERTICAL:
- return getScrollableIncrement(verticalBlock, visible.height);
- default:
- throw new IllegalArgumentException("Invalid orientation: " + orientation);
- }
- }
-
- protected int getScrollableIncrement(IncrementInfo info, int distance)
- {
- if (info.getIncrement() == IncrementType.PIXELS)
- return info.getAmount();
- else
- return distance * info.getAmount() / 100;
- }
-
- public boolean getScrollableTracksViewportWidth()
- {
- if (scrollableWidth == ScrollableSizeHint.NONE)
- return false;
-
- if (scrollableWidth == ScrollableSizeHint.FIT)
- return true;
-
- // STRETCH sizing, use the greater of the panel or viewport width
-
- if (getParent() instanceof JViewport)
- {
- return (((JViewport)getParent()).getWidth() > getPreferredSize().width);
- }
-
- return false;
- }
-
- public boolean getScrollableTracksViewportHeight()
- {
- if (scrollableHeight == ScrollableSizeHint.NONE)
- return false;
-
- if (scrollableHeight == ScrollableSizeHint.FIT)
- return true;
-
- // STRETCH sizing, use the greater of the panel or viewport height
-
-
- if (getParent() instanceof JViewport)
- {
- return (((JViewport)getParent()).getHeight() > getPreferredSize().height);
- }
-
- return false;
- }
-
- public void setMaxSize(Dimension maxSize) {
- this.maxSize = maxSize;
- }
-
- public Dimension getMaxSize() {
- return maxSize;
- }
-
- public void setPreferedSize(Dimension preferedSize) {
- this.preferedSize = preferedSize;
- }
-
- public Dimension getPreferedSize() {
- return preferedSize;
- }
-
- /**
- * Helper class to hold the information required to calculate the scroll amount.
- */
- static class IncrementInfo
- {
- private IncrementType type;
- private int amount;
-
- public IncrementInfo(IncrementType type, int amount)
- {
- this.type = type;
- this.amount = amount;
- }
-
- public IncrementType getIncrement()
- {
- return type;
- }
-
- public int getAmount()
- {
- return amount;
- }
-
- public String toString()
- {
- return
- "ScrollablePanel[" +
- type + ", " +
- amount + "]";
- }
- }
-}
+package gov.epa.festc.gui;
+
+import java.awt.*;
+
+import javax.swing.*;
+
+/**
+ * A panel that implements the Scrollable interface. This class allows you
+ * to customize the scrollable features by using newly provided setter methods
+ * so you don't have to extend this class every time.
+ *
+ * Scrollable amounts can be specifed as a percentage of the viewport size or
+ * as an actual pixel value. The amount can be changed for both unit and block
+ * scrolling for both horizontal and vertical scrollbars.
+ *
+ * The Scrollable interface only provides a boolean value for determining whether
+ * or not the viewport size (width or height) should be used by the scrollpane
+ * when determining if scrollbars should be made visible. This class supports the
+ * concept of dynamically changing this value based on the size of the viewport.
+ * In this case the viewport size will only be used when it is larger than the
+ * panels size. This has the effect of ensuring the viewport is always full as
+ * components added to the panel will be size to fill the area available,
+ * based on the rules of the applicable layout manager of course.
+ */
+public class ScrollablePanel extends JPanel
+ implements Scrollable, SwingConstants
+{
+ public enum ScrollableSizeHint
+ {
+ NONE,
+ FIT,
+ STRETCH;
+ }
+
+ public enum IncrementType
+ {
+ PERCENT,
+ PIXELS;
+ }
+
+ private ScrollableSizeHint scrollableHeight = ScrollableSizeHint.NONE;
+ private ScrollableSizeHint scrollableWidth = ScrollableSizeHint.NONE;
+
+ private IncrementInfo horizontalBlock;
+ private IncrementInfo horizontalUnit;
+ private IncrementInfo verticalBlock;
+ private IncrementInfo verticalUnit;
+
+ private Dimension maxSize;
+ private Dimension preferedSize;
+
+ /**
+ * Default constructor that uses a FlowLayout
+ */
+ public ScrollablePanel()
+ {
+ this( new FlowLayout() );
+ }
+
+ /**
+ * Constuctor for specifying the LayoutManager of the panel.
+ *
+ * @param layout the LayountManger for the panel
+ */
+ public ScrollablePanel(LayoutManager layout)
+ {
+ super( layout );
+
+ IncrementInfo block = new IncrementInfo(IncrementType.PERCENT, 100);
+ IncrementInfo unit = new IncrementInfo(IncrementType.PERCENT, 10);
+
+ setScrollableBlockIncrement(HORIZONTAL, block);
+ setScrollableBlockIncrement(VERTICAL, block);
+ setScrollableUnitIncrement(HORIZONTAL, unit);
+ setScrollableUnitIncrement(VERTICAL, unit);
+
+ Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
+ int maxWidth = (int) (screenSize.getWidth()*0.7);
+ int maxHeight = (int) (screenSize.getHeight()*0.7);
+ int preferedWidth = (int) (screenSize.getWidth()/3);
+ int preferedHeight = (int) (screenSize.getHeight()/2);
+ maxSize = new Dimension(maxWidth, maxHeight);
+ preferedSize = new Dimension(preferedWidth, preferedHeight);
+ }
+
+ /**
+ * Get the height ScrollableSizeHint enum
+ *
+ * @return the ScrollableSizeHint enum for the height
+ */
+ public ScrollableSizeHint getScrollableHeight()
+ {
+ return scrollableHeight;
+ }
+
+ /**
+ * Set the ScrollableSizeHint enum for the height. The enum is used to
+ * determine the boolean value that is returned by the
+ * getScrollableTracksViewportHeight() method. The valid values are:
+ *
+ * ScrollableSizeHint.NONE - return "false", which causes the height
+ * of the panel to be used when laying out the children
+ * ScrollableSizeHint.FIT - return "true", which causes the height of
+ * the viewport to be used when laying out the children
+ * ScrollableSizeHint.STRETCH - return "true" when the viewport height
+ * is greater than the height of the panel, "false" otherwise.
+ *
+ * @param scrollableHeight as represented by the ScrollableSizeHint enum.
+ */
+ public void setScrollableHeight(ScrollableSizeHint scrollableHeight)
+ {
+ this.scrollableHeight = scrollableHeight;
+ revalidate();
+ }
+
+ /**
+ * Get the width ScrollableSizeHint enum
+ *
+ * @return the ScrollableSizeHint enum for the width
+ */
+ public ScrollableSizeHint getScrollableWidth()
+ {
+ return scrollableWidth;
+ }
+
+ /**
+ * Set the ScrollableSizeHint enum for the width. The enum is used to
+ * determine the boolean value that is returned by the
+ * getScrollableTracksViewportWidth() method. The valid values are:
+ *
+ * ScrollableSizeHint.NONE - return "false", which causes the width
+ * of the panel to be used when laying out the children
+ * ScrollableSizeHint.FIT - return "true", which causes the width of
+ * the viewport to be used when laying out the children
+ * ScrollableSizeHint.STRETCH - return "true" when the viewport width
+ * is greater than the width of the panel, "false" otherwise.
+ *
+ * @param scrollableWidth as represented by the ScrollableSizeHint enum.
+ */
+ public void setScrollableWidth(ScrollableSizeHint scrollableWidth)
+ {
+ this.scrollableWidth = scrollableWidth;
+ revalidate();
+ }
+
+ /**
+ * Get the block IncrementInfo for the specified orientation
+ *
+ * @return the block IncrementInfo for the specified orientation
+ */
+ public IncrementInfo getScrollableBlockIncrement(int orientation)
+ {
+ return orientation == SwingConstants.HORIZONTAL ? horizontalBlock : verticalBlock;
+ }
+
+ /**
+ * Specify the information needed to do block scrolling.
+ *
+ * @param orientation specify the scrolling orientation. Must be either:
+ * SwingContants.HORIZONTAL or SwingContants.VERTICAL.
+ * @paran type specify how the amount parameter in the calculation of
+ * the scrollable amount. Valid values are:
+ * IncrementType.PERCENT - treat the amount as a % of the viewport size
+ * IncrementType.PIXEL - treat the amount as the scrollable amount
+ * @param amount a value used with the IncrementType to determine the
+ * scrollable amount
+ */
+ public void setScrollableBlockIncrement(int orientation, IncrementType type, int amount)
+ {
+ IncrementInfo info = new IncrementInfo(type, amount);
+ setScrollableBlockIncrement(orientation, info);
+ }
+
+ /**
+ * Specify the information needed to do block scrolling.
+ *
+ * @param orientation specify the scrolling orientation. Must be either:
+ * SwingContants.HORIZONTAL or SwingContants.VERTICAL.
+ * @param info An IncrementInfo object containing information of how to
+ * calculate the scrollable amount.
+ */
+ public void setScrollableBlockIncrement(int orientation, IncrementInfo info)
+ {
+ switch(orientation)
+ {
+ case SwingConstants.HORIZONTAL:
+ horizontalBlock = info;
+ break;
+ case SwingConstants.VERTICAL:
+ verticalBlock = info;
+ break;
+ default:
+ throw new IllegalArgumentException("Invalid orientation: " + orientation);
+ }
+ }
+
+ /**
+ * Get the unit IncrementInfo for the specified orientation
+ *
+ * @return the unit IncrementInfo for the specified orientation
+ */
+ public IncrementInfo getScrollableUnitIncrement(int orientation)
+ {
+ return orientation == SwingConstants.HORIZONTAL ? horizontalUnit : verticalUnit;
+ }
+
+ /**
+ * Specify the information needed to do unit scrolling.
+ *
+ * @param orientation specify the scrolling orientation. Must be either:
+ * SwingContants.HORIZONTAL or SwingContants.VERTICAL.
+ * @paran type specify how the amount parameter in the calculation of
+ * the scrollable amount. Valid values are:
+ * IncrementType.PERCENT - treat the amount as a % of the viewport size
+ * IncrementType.PIXEL - treat the amount as the scrollable amount
+ * @param amount a value used with the IncrementType to determine the
+ * scrollable amount
+ */
+ public void setScrollableUnitIncrement(int orientation, IncrementType type, int amount)
+ {
+ IncrementInfo info = new IncrementInfo(type, amount);
+ setScrollableUnitIncrement(orientation, info);
+ }
+
+ /**
+ * Specify the information needed to do unit scrolling.
+ *
+ * @param orientation specify the scrolling orientation. Must be either:
+ * SwingContants.HORIZONTAL or SwingContants.VERTICAL.
+ * @param info An IncrementInfo object containing information of how to
+ * calculate the scrollable amount.
+ */
+ public void setScrollableUnitIncrement(int orientation, IncrementInfo info)
+ {
+ switch(orientation)
+ {
+ case SwingConstants.HORIZONTAL:
+ horizontalUnit = info;
+ break;
+ case SwingConstants.VERTICAL:
+ verticalUnit = info;
+ break;
+ default:
+ throw new IllegalArgumentException("Invalid orientation: " + orientation);
+ }
+ }
+
+// Implement Scrollable interface
+
+ public Dimension getPreferredScrollableViewportSize()
+ {
+ return preferedSize; //getPreferredSize();
+ }
+
+ public int getScrollableUnitIncrement(
+ Rectangle visible, int orientation, int direction)
+ {
+ switch(orientation)
+ {
+ case SwingConstants.HORIZONTAL:
+ return getScrollableIncrement(horizontalUnit, visible.width);
+ case SwingConstants.VERTICAL:
+ return getScrollableIncrement(verticalUnit, visible.height);
+ default:
+ throw new IllegalArgumentException("Invalid orientation: " + orientation);
+ }
+ }
+
+ public int getScrollableBlockIncrement(
+ Rectangle visible, int orientation, int direction)
+ {
+ switch(orientation)
+ {
+ case SwingConstants.HORIZONTAL:
+ return getScrollableIncrement(horizontalBlock, visible.width);
+ case SwingConstants.VERTICAL:
+ return getScrollableIncrement(verticalBlock, visible.height);
+ default:
+ throw new IllegalArgumentException("Invalid orientation: " + orientation);
+ }
+ }
+
+ protected int getScrollableIncrement(IncrementInfo info, int distance)
+ {
+ if (info.getIncrement() == IncrementType.PIXELS)
+ return info.getAmount();
+ else
+ return distance * info.getAmount() / 100;
+ }
+
+ public boolean getScrollableTracksViewportWidth()
+ {
+ if (scrollableWidth == ScrollableSizeHint.NONE)
+ return false;
+
+ if (scrollableWidth == ScrollableSizeHint.FIT)
+ return true;
+
+ // STRETCH sizing, use the greater of the panel or viewport width
+
+ if (getParent() instanceof JViewport)
+ {
+ return (((JViewport)getParent()).getWidth() > getPreferredSize().width);
+ }
+
+ return false;
+ }
+
+ public boolean getScrollableTracksViewportHeight()
+ {
+ if (scrollableHeight == ScrollableSizeHint.NONE)
+ return false;
+
+ if (scrollableHeight == ScrollableSizeHint.FIT)
+ return true;
+
+ // STRETCH sizing, use the greater of the panel or viewport height
+
+
+ if (getParent() instanceof JViewport)
+ {
+ return (((JViewport)getParent()).getHeight() > getPreferredSize().height);
+ }
+
+ return false;
+ }
+
+ public void setMaxSize(Dimension maxSize) {
+ this.maxSize = maxSize;
+ }
+
+ public Dimension getMaxSize() {
+ return maxSize;
+ }
+
+ public void setPreferedSize(Dimension preferedSize) {
+ this.preferedSize = preferedSize;
+ }
+
+ public Dimension getPreferedSize() {
+ return preferedSize;
+ }
+
+ /**
+ * Helper class to hold the information required to calculate the scroll amount.
+ */
+ static class IncrementInfo
+ {
+ private IncrementType type;
+ private int amount;
+
+ public IncrementInfo(IncrementType type, int amount)
+ {
+ this.type = type;
+ this.amount = amount;
+ }
+
+ public IncrementType getIncrement()
+ {
+ return type;
+ }
+
+ public int getAmount()
+ {
+ return amount;
+ }
+
+ public String toString()
+ {
+ return
+ "ScrollablePanel[" +
+ type + ", " +
+ amount + "]";
+ }
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/gui/ToolsPanel.java b/festc_core/src/gov/epa/festc/gui/ToolsPanel.java
index 84a8d23..ef7ffbd 100644
--- a/festc_core/src/gov/epa/festc/gui/ToolsPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/ToolsPanel.java
@@ -1,188 +1,188 @@
-package gov.epa.festc.gui;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.core.FestcConstants;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.SpringLayoutGenerator;
-
-import java.awt.BorderLayout;
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Font;
-import java.awt.GradientPaint;
-import java.awt.Graphics;
-import java.awt.Graphics2D;
-import java.awt.Point;
-import java.awt.event.ActionEvent;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.BorderFactory;
-import javax.swing.JButton;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.SpringLayout;
-import javax.swing.SwingConstants;
-import javax.swing.UIManager;
-
-public class ToolsPanel extends JPanel {
- private static final long serialVersionUID = 8082261605112772487L;
- private FestcApplication app;
-
- public ToolsPanel(FestcApplication festcApp) {
- app = festcApp;
- add(createPanel());
- super.requestFocusInWindow();
- }
-
- private JPanel createPanel() {
- JPanel main = new JPanel(new BorderLayout());
- main.add(getNorthPanel(), BorderLayout.NORTH);
- main.add(getCenterPanel(), BorderLayout.CENTER);
- Dimension d = main.getMinimumSize();
- d.width = 120;
- main.setMinimumSize(d);
- d = main.getMaximumSize();
- d.width = 120;
- main.setMaximumSize(d);
- return main;
- }
-
- private JPanel getNorthPanel() {
- JPanel panel = new JPanel();
- JLabel title = new JLabel(
- "FEST-C Tools", //"Fertilizer Emission Scenario Tool for CMAQ (FEST-C)", // Tools",
- SwingConstants.CENTER);
- title.setFont(new Font("Default", Font.BOLD, 20));
-
- panel.add(title);
- panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 20, 0));
-
- return panel;
- }
-
- private JPanel getCenterPanel() {
- JPanel panel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
- //hsb = Color.RGBtoHSB(r,g,b,hsb);
-
- JGradientButton landUsebutton = new JGradientButton(buttonAction(Constants.BELD4_GEN, FestcConstants.BELD4_VIEW),
- Color.getHSBColor(210f / 360, 0.25f, 0.95f));
- JGradientButton sitegenbutton = new JGradientButton(buttonAction(Constants.SITE_INFO, FestcConstants.SITE_INFO_VIEW),
- Color.getHSBColor(210f / 360, 0.25f, 0.95f));
- JGradientButton m2pbutton = new JGradientButton(buttonAction(Constants.MC2EPIC, FestcConstants.MCIP2EPIC_VIEW),
- Color.getHSBColor(210f / 360, 0.25f, 0.95f));
- JGradientButton sitefilebutton = new JGradientButton(buttonAction(Constants.EPIC_SITE, FestcConstants.SITE_FILE_VIEW),
- Color.getHSBColor(120f / 360, 0.25f, 0.95f));
- JGradientButton genbutton = new JGradientButton(buttonAction(Constants.SOIL_MATCH, FestcConstants.GEN_SOIL_MAN_FILES_VIEW),
- Color.getHSBColor(120f / 360, 0.25f, 0.95f));
- JGradientButton manfilespinbutton = new JGradientButton(buttonAction(Constants.MAN_SPINUP, FestcConstants.MAN_FILE_SPINUP_VIEW),
- Color.getHSBColor(120f / 360, 0.25f, 0.95f));
- JGradientButton modbutton = new JGradientButton(buttonAction(Constants.EDIT_INFILES, FestcConstants.MANAGE_VIEW),
- Color.getHSBColor(50f / 360, 0.25f, 0.95f));
- JGradientButton epicbutton = new JGradientButton(buttonAction(Constants.EPIC_SPINUP, FestcConstants.EPIC_VIEW),
- Color.getHSBColor(30f / 360, 0.25f, 0.95f));
- JGradientButton manfileappbutton = new JGradientButton(buttonAction(Constants.MAN_APP, FestcConstants.MAN_FILE_APP_VIEW),
- Color.getHSBColor(30f / 360, 0.25f, 0.95f));
- JGradientButton epicappbutton = new JGradientButton(buttonAction(Constants.EPIC_APP, FestcConstants.EPIC4APP_VIEW),
- Color.getHSBColor(30f / 360, 0.25f, 0.95f));
- JGradientButton eya2cbutton = new JGradientButton(buttonAction(Constants.EPIC_YEAR, FestcConstants.EPIC_YEARLY_AVERAGE2CMAQ_VIEW),
- Color.getHSBColor(230f / 360, 0.40f, 0.95f));
- JGradientButton e2cbutton = new JGradientButton(buttonAction(Constants.EPIC2CMAQ, FestcConstants.EPIC2CMAQ_VIEW),
- Color.getHSBColor(230f / 360, 0.40f, 0.95f));
- JGradientButton e2wbutton = new JGradientButton(buttonAction(Constants.EPIC2SWAT, FestcConstants.EPIC2SWAT_VIEW),
- Color.getHSBColor(230f / 360, 0.40f, 0.95f));
- JButton visbutton = new JGradientButton(buttonAction(Constants.VISU, FestcConstants.VISUALIZE_VIEW),
- Color.getHSBColor(230f / 360, 0.40f, 0.95f));
-
- landUsebutton.setPreferredSize(new Dimension(340, 40));
- sitegenbutton.setPreferredSize(new Dimension(340, 40));
- m2pbutton.setPreferredSize(new Dimension(340, 40));
- sitefilebutton.setPreferredSize(new Dimension(340, 40));
- genbutton.setPreferredSize(new Dimension(340, 40));
- manfilespinbutton.setPreferredSize(new Dimension(340, 40));
- modbutton.setPreferredSize(new Dimension(340, 40));
- epicbutton.setPreferredSize(new Dimension(340, 40));
- eya2cbutton.setPreferredSize(new Dimension(340, 40));
- manfileappbutton.setPreferredSize(new Dimension(340, 40));
- epicappbutton.setPreferredSize(new Dimension(340, 40));
- e2cbutton.setPreferredSize(new Dimension(340, 40));
- e2wbutton.setPreferredSize(new Dimension(340, 40));
- visbutton.setPreferredSize(new Dimension(340, 40));
-
- landUsebutton.setFont(new Font("Default", Font.BOLD, 14));
- sitegenbutton.setFont(new Font("Default", Font.BOLD, 14));
- m2pbutton.setFont(new Font("Default", Font.BOLD, 14));
- sitefilebutton.setFont(new Font("Default", Font.BOLD, 14));
- genbutton.setFont(new Font("Default", Font.BOLD, 14));
- manfilespinbutton.setFont(new Font("Default", Font.BOLD, 14));
- modbutton.setFont(new Font("Default", Font.BOLD, 14));
- epicbutton.setFont(new Font("Default", Font.BOLD, 14));
- eya2cbutton.setFont(new Font("Default", Font.BOLD, 14));
- manfileappbutton.setFont(new Font("Default", Font.BOLD, 14));
- epicappbutton.setFont(new Font("Default", Font.BOLD, 14));
- e2cbutton.setFont(new Font("Default", Font.BOLD, 14));
- e2wbutton.setFont(new Font("Default", Font.BOLD, 14));
- visbutton.setFont(new Font("Default", Font.BOLD, 14));
-
- layout.addLabelWidgetPair("", landUsebutton, panel);
- layout.addLabelWidgetPair("", sitegenbutton, panel);
- layout.addLabelWidgetPair("", m2pbutton, panel);
- layout.addLabelWidgetPair("", sitefilebutton, panel);
- layout.addLabelWidgetPair("", genbutton, panel);
- layout.addLabelWidgetPair("", manfilespinbutton, panel);
- layout.addLabelWidgetPair("", modbutton, panel);
- layout.addLabelWidgetPair("", epicbutton, panel);
- layout.addLabelWidgetPair("", manfileappbutton, panel);
- layout.addLabelWidgetPair("", epicappbutton, panel);
- layout.addLabelWidgetPair("", eya2cbutton, panel);
- layout.addLabelWidgetPair("", e2cbutton, panel);
- layout.addLabelWidgetPair("", e2wbutton, panel);
- layout.addLabelWidgetPair("", visbutton, panel);
-
- layout.makeCompactGrid(panel, 14, 2, // number of rows and cols
- 1, 1, // initial X and Y
- 1, 1); // x and y pading
-
- return panel;
- }
-
- private Action buttonAction(final String name, final String viewId) {
- return new AbstractAction(name) {
- private static final long serialVersionUID = -957559355824942766L;
-
- public void actionPerformed(ActionEvent e) {
- app.showTab(viewId);
- }
- };
- }
-
- private class JGradientButton extends JButton {
- private static final long serialVersionUID = -2397650058508947005L;
- private Color bckGrndColor;
-
- private JGradientButton(Action action, Color bckGrndColor){
- super(action);
- setContentAreaFilled(false);
- setFocusPainted(false); // used for demonstration
- this.bckGrndColor = bckGrndColor;
- }
-
- @Override
- protected void paintComponent(Graphics g){
- Graphics2D g2 = (Graphics2D)g.create();
- g2.setPaint(new GradientPaint(
- new Point(0, getHeight() / 3),
- Color.WHITE,
- new Point(0, 0),
- bckGrndColor, true));
- g2.fillRect(0, 0, getWidth(), (getHeight() * 2) / 3);
- g2.setPaint(bckGrndColor);
- g2.fillRect(0, (getHeight() * 2) / 3, getWidth(), getHeight());
- g2.dispose();
-
- super.paintComponent(g);
- }
- }
-
-}
+package gov.epa.festc.gui;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.FestcConstants;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.SpringLayoutGenerator;
+
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.GradientPaint;
+import java.awt.Graphics;
+import java.awt.Graphics2D;
+import java.awt.Point;
+import java.awt.event.ActionEvent;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.JButton;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.SpringLayout;
+import javax.swing.SwingConstants;
+import javax.swing.UIManager;
+
+public class ToolsPanel extends JPanel {
+ private static final long serialVersionUID = 8082261605112772487L;
+ private FestcApplication app;
+
+ public ToolsPanel(FestcApplication festcApp) {
+ app = festcApp;
+ add(createPanel());
+ super.requestFocusInWindow();
+ }
+
+ private JPanel createPanel() {
+ JPanel main = new JPanel(new BorderLayout());
+ main.add(getNorthPanel(), BorderLayout.NORTH);
+ main.add(getCenterPanel(), BorderLayout.CENTER);
+ Dimension d = main.getMinimumSize();
+ d.width = 120;
+ main.setMinimumSize(d);
+ d = main.getMaximumSize();
+ d.width = 120;
+ main.setMaximumSize(d);
+ return main;
+ }
+
+ private JPanel getNorthPanel() {
+ JPanel panel = new JPanel();
+ JLabel title = new JLabel(
+ "FEST-C Tools", //"Fertilizer Emission Scenario Tool for CMAQ (FEST-C)", // Tools",
+ SwingConstants.CENTER);
+ title.setFont(new Font("Default", Font.BOLD, 20));
+
+ panel.add(title);
+ panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 20, 0));
+
+ return panel;
+ }
+
+ private JPanel getCenterPanel() {
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+ //hsb = Color.RGBtoHSB(r,g,b,hsb);
+
+ JGradientButton landUsebutton = new JGradientButton(buttonAction(Constants.BELD4_GEN, FestcConstants.BELD4_VIEW),
+ Color.getHSBColor(210f / 360, 0.25f, 0.95f));
+ JGradientButton sitegenbutton = new JGradientButton(buttonAction(Constants.SITE_INFO, FestcConstants.SITE_INFO_VIEW),
+ Color.getHSBColor(210f / 360, 0.25f, 0.95f));
+ JGradientButton m2pbutton = new JGradientButton(buttonAction(Constants.MC2EPIC, FestcConstants.MCIP2EPIC_VIEW),
+ Color.getHSBColor(210f / 360, 0.25f, 0.95f));
+ JGradientButton sitefilebutton = new JGradientButton(buttonAction(Constants.EPIC_SITE, FestcConstants.SITE_FILE_VIEW),
+ Color.getHSBColor(120f / 360, 0.25f, 0.95f));
+ JGradientButton genbutton = new JGradientButton(buttonAction(Constants.SOIL_MATCH, FestcConstants.GEN_SOIL_MAN_FILES_VIEW),
+ Color.getHSBColor(120f / 360, 0.25f, 0.95f));
+ JGradientButton manfilespinbutton = new JGradientButton(buttonAction(Constants.MAN_SPINUP, FestcConstants.MAN_FILE_SPINUP_VIEW),
+ Color.getHSBColor(120f / 360, 0.25f, 0.95f));
+ JGradientButton modbutton = new JGradientButton(buttonAction(Constants.EDIT_INFILES, FestcConstants.MANAGE_VIEW),
+ Color.getHSBColor(50f / 360, 0.25f, 0.95f));
+ JGradientButton epicbutton = new JGradientButton(buttonAction(Constants.EPIC_SPINUP, FestcConstants.EPIC_VIEW),
+ Color.getHSBColor(30f / 360, 0.25f, 0.95f));
+ JGradientButton manfileappbutton = new JGradientButton(buttonAction(Constants.MAN_APP, FestcConstants.MAN_FILE_APP_VIEW),
+ Color.getHSBColor(30f / 360, 0.25f, 0.95f));
+ JGradientButton epicappbutton = new JGradientButton(buttonAction(Constants.EPIC_APP, FestcConstants.EPIC4APP_VIEW),
+ Color.getHSBColor(30f / 360, 0.25f, 0.95f));
+ JGradientButton eya2cbutton = new JGradientButton(buttonAction(Constants.EPIC_YEAR, FestcConstants.EPIC_YEARLY_AVERAGE2CMAQ_VIEW),
+ Color.getHSBColor(230f / 360, 0.40f, 0.95f));
+ JGradientButton e2cbutton = new JGradientButton(buttonAction(Constants.EPIC2CMAQ, FestcConstants.EPIC2CMAQ_VIEW),
+ Color.getHSBColor(230f / 360, 0.40f, 0.95f));
+ JGradientButton e2wbutton = new JGradientButton(buttonAction(Constants.EPIC2SWAT, FestcConstants.EPIC2SWAT_VIEW),
+ Color.getHSBColor(230f / 360, 0.40f, 0.95f));
+ JButton visbutton = new JGradientButton(buttonAction(Constants.VISU, FestcConstants.VISUALIZE_VIEW),
+ Color.getHSBColor(230f / 360, 0.40f, 0.95f));
+
+ landUsebutton.setPreferredSize(new Dimension(340, 40));
+ sitegenbutton.setPreferredSize(new Dimension(340, 40));
+ m2pbutton.setPreferredSize(new Dimension(340, 40));
+ sitefilebutton.setPreferredSize(new Dimension(340, 40));
+ genbutton.setPreferredSize(new Dimension(340, 40));
+ manfilespinbutton.setPreferredSize(new Dimension(340, 40));
+ modbutton.setPreferredSize(new Dimension(340, 40));
+ epicbutton.setPreferredSize(new Dimension(340, 40));
+ eya2cbutton.setPreferredSize(new Dimension(340, 40));
+ manfileappbutton.setPreferredSize(new Dimension(340, 40));
+ epicappbutton.setPreferredSize(new Dimension(340, 40));
+ e2cbutton.setPreferredSize(new Dimension(340, 40));
+ e2wbutton.setPreferredSize(new Dimension(340, 40));
+ visbutton.setPreferredSize(new Dimension(340, 40));
+
+ landUsebutton.setFont(new Font("Default", Font.BOLD, 14));
+ sitegenbutton.setFont(new Font("Default", Font.BOLD, 14));
+ m2pbutton.setFont(new Font("Default", Font.BOLD, 14));
+ sitefilebutton.setFont(new Font("Default", Font.BOLD, 14));
+ genbutton.setFont(new Font("Default", Font.BOLD, 14));
+ manfilespinbutton.setFont(new Font("Default", Font.BOLD, 14));
+ modbutton.setFont(new Font("Default", Font.BOLD, 14));
+ epicbutton.setFont(new Font("Default", Font.BOLD, 14));
+ eya2cbutton.setFont(new Font("Default", Font.BOLD, 14));
+ manfileappbutton.setFont(new Font("Default", Font.BOLD, 14));
+ epicappbutton.setFont(new Font("Default", Font.BOLD, 14));
+ e2cbutton.setFont(new Font("Default", Font.BOLD, 14));
+ e2wbutton.setFont(new Font("Default", Font.BOLD, 14));
+ visbutton.setFont(new Font("Default", Font.BOLD, 14));
+
+ layout.addLabelWidgetPair("", landUsebutton, panel);
+ layout.addLabelWidgetPair("", sitegenbutton, panel);
+ layout.addLabelWidgetPair("", m2pbutton, panel);
+ layout.addLabelWidgetPair("", sitefilebutton, panel);
+ layout.addLabelWidgetPair("", genbutton, panel);
+ layout.addLabelWidgetPair("", manfilespinbutton, panel);
+ layout.addLabelWidgetPair("", modbutton, panel);
+ layout.addLabelWidgetPair("", epicbutton, panel);
+ layout.addLabelWidgetPair("", manfileappbutton, panel);
+ layout.addLabelWidgetPair("", epicappbutton, panel);
+ layout.addLabelWidgetPair("", eya2cbutton, panel);
+ layout.addLabelWidgetPair("", e2cbutton, panel);
+ layout.addLabelWidgetPair("", e2wbutton, panel);
+ layout.addLabelWidgetPair("", visbutton, panel);
+
+ layout.makeCompactGrid(panel, 14, 2, // number of rows and cols
+ 1, 1, // initial X and Y
+ 1, 1); // x and y pading
+
+ return panel;
+ }
+
+ private Action buttonAction(final String name, final String viewId) {
+ return new AbstractAction(name) {
+ private static final long serialVersionUID = -957559355824942766L;
+
+ public void actionPerformed(ActionEvent e) {
+ app.showTab(viewId);
+ }
+ };
+ }
+
+ private class JGradientButton extends JButton {
+ private static final long serialVersionUID = -2397650058508947005L;
+ private Color bckGrndColor;
+
+ private JGradientButton(Action action, Color bckGrndColor){
+ super(action);
+ setContentAreaFilled(false);
+ setFocusPainted(false); // used for demonstration
+ this.bckGrndColor = bckGrndColor;
+ }
+
+ @Override
+ protected void paintComponent(Graphics g){
+ Graphics2D g2 = (Graphics2D)g.create();
+ g2.setPaint(new GradientPaint(
+ new Point(0, getHeight() / 3),
+ Color.WHITE,
+ new Point(0, 0),
+ bckGrndColor, true));
+ g2.fillRect(0, 0, getWidth(), (getHeight() * 2) / 3);
+ g2.setPaint(bckGrndColor);
+ g2.fillRect(0, (getHeight() * 2) / 3, getWidth(), getHeight());
+ g2.dispose();
+
+ super.paintComponent(g);
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/UtilGenerateSiteFilesPanel.java b/festc_core/src/gov/epa/festc/gui/UtilGenerateSiteFilesPanel.java
index 6caf274..7dde825 100644
--- a/festc_core/src/gov/epa/festc/gui/UtilGenerateSiteFilesPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/UtilGenerateSiteFilesPanel.java
@@ -1,341 +1,441 @@
-package gov.epa.festc.gui;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.core.proj.DomainFields;
-import gov.epa.festc.core.proj.SiteFilesFields;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.FileRunner;
-import gov.epa.festc.util.SpringLayoutGenerator;
-
-import java.awt.event.ActionEvent;
-import java.io.BufferedWriter;
-import java.io.File;
-import java.io.FileWriter;
-import java.io.IOException;
-import java.text.SimpleDateFormat;
-import java.util.Date;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.BorderFactory;
-import javax.swing.BoxLayout;
-import javax.swing.JButton;
-import javax.swing.JPanel;
-import javax.swing.JTextField;
-import javax.swing.SpringLayout;
-
-import simphony.util.messages.MessageCenter;
-
-public class UtilGenerateSiteFilesPanel extends UtilFieldsPanel implements PlotEventListener{
- private static final long serialVersionUID = 1326060715078017117L;
-
- private FestcApplication app;
- private MessageCenter msg;
- private SiteFilesFields fields;
-
- private JTextField minAcreas;
-
- public UtilGenerateSiteFilesPanel(FestcApplication application, MessageCenter msg) {
- app = application;
- init();
- fields = new SiteFilesFields();
- app.getProject().addPage(fields);
- app.addPlotListener(this);
- this.msg = msg;
- add(createPanel());
- }
-
- private JPanel createPanel() {
- JPanel mainPanel = new JPanel();
- mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
-
- JPanel panel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
- //this.scenarioDir = new JTextField(40);
- JPanel minAcrePanel = new JPanel();
- minAcreas = new JTextField(20);
- minAcreas.setToolTipText("Default value is 40.0");
- minAcrePanel.add(minAcreas);
-
- JPanel buttonPanel = new JPanel();
- JButton btn = new JButton(generateSiteFilesAction());
- buttonPanel.add(btn);
- buttonPanel.setBorder(BorderFactory.createEmptyBorder(30, 30, 30, 0));
-
- layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
- layout.addLabelWidgetPair("Minimum Crop Acres: ", minAcrePanel, panel);
-
- layout.makeCompactGrid(panel, 2, 2, // number of rows and cols
- 10, 10, // initial X and Y
- 5, 5); // x and y pading
-
- mainPanel.add(panel);
- mainPanel.add(buttonPanel);
- mainPanel.add(messageBox());
- return mainPanel;
- }
-
- private Action generateSiteFilesAction() {
- return new AbstractAction("Generate Site Files") {
- private static final long serialVersionUID = 5558465823154735475L;
-
- public void actionPerformed(ActionEvent e) {
- try {
-
- generateRunScript();
-
- } catch (Exception exc) {
- //msg.error("ERROR", exc);
- app.showMessage("Run script", exc.getMessage());
- }
- }
- };
- }
-
- private void generateRunScript() throws Exception {
- String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- if (baseDir == null || baseDir.isEmpty())
- throw new Exception("Base dir is empty, please specify in the configuration file!");
-
- String scenarioDir = this.scenarioDir.getText();
- validateScen(scenarioDir);
-
- String minAcres = minAcreas.getText();
- if (minAcres == null || minAcres.isEmpty())
- throw new Exception("Minimum Crop Acres is not specified!");
-
- String sMAcres = domain.getCMinAcres();
- if (sMAcres == null || sMAcres.trim().isEmpty()) {
- domain.setCMinAcres(minAcres);
- sMAcres = minAcres;
- }
- else if (sMAcres != null && !sMAcres.trim().isEmpty()
- && (Float.parseFloat(sMAcres))!=(Float.parseFloat(minAcres)) && app.allowDiffCheck())
- throw new Exception("Current minimum acre "+minAcres+ " is inconsistent with previous one (" + sMAcres + ")");
-
-
- try {
- Float.parseFloat(minAcres);
- }catch(NumberFormatException e) {
- throw new Exception("Minimum Crop Acres is not a number!");
- }
-
- outMessages += "Epic base: " + baseDir + ls;
- outMessages += "Scen directory: " + scenarioDir + ls;
-
- final String file = writeRunScriptScript(baseDir, scenarioDir);
-
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- runScript(file);
- }
- });
- populateThread.start();
- }
-
- private void runScript(final String file) {
- String log = file + ".log";
-
- outMessages += "Script file: " + file + ls;
- outMessages += "Log file: " + log + ls;
- runMessages.setText(outMessages);
- runMessages.validate();
- FileRunner.runScript(file, log, msg);
- }
-
- private String writeRunScriptScript(
- String baseDir,
- String scenarioDir ) throws Exception {
-
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or java.sql.Timestamp!
- String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
-
- String file = scenarioDir.trim() + "/scripts";
- if ( !file.endsWith(System.getProperty("file.separator")))
- file += System.getProperty("file.separator");
- file += "generateEpicSiteFile_" + timeStamp + ".csh";
-
- StringBuilder sb = new StringBuilder();
- sb.append(getScirptHeader());
- sb.append(getEnvironmentDef(baseDir, scenarioDir));
- sb.append(getSiteGrid());
- sb.append(getBeld4HUC8());
-
- String mesg = "";
-
- try {
- File script = new File(file);
-
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
-
- mesg += "Script file: " + file + ls;
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
-
- } catch (IOException e) {
- //e.printStackTrace();
- //msg.error("Error generating EPIC script file", e);
- throw new Exception(e.getMessage());
- }
- app.showMessage("Write script", mesg);
-
- return file;
- }
-
- private String getScirptHeader() {
- StringBuilder sb = new StringBuilder();
- sb.append("#!/bin/csh -f" + ls);
- sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to run Site Creation and HUC8 Utilities" + ls);
- sb.append("#" + ls);
- sb.append("# Written by: Fortran by Benson, Script by IE. 2010" + ls);
- sb.append("# Modified by:" + ls);
- sb.append("#" + ls);
- sb.append("# Program: SITE_FILE_CREATOR.exe and SITEBELD4HUC8.exe" + ls);
- sb.append("# " + ls);
- sb.append("#***************************************************************************************" + ls + ls);
-
-
- return sb.toString();
- }
-
- private String getEnvironmentDef(String baseDir, String scenarioDir) {
- StringBuilder sb = new StringBuilder();
-
- sb.append(ls + "#" + ls);
- sb.append("# Define environment variables" + ls);
- sb.append("#" + ls + ls);
-
- sb.append("setenv EPIC_DIR " + baseDir + ls);
- sb.append("setenv SCEN_DIR " + scenarioDir + ls);
- sb.append("setenv WORK_DIR " + scenarioDir + "/work_dir" +ls);
- sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls);
- sb.append("setenv SIT_DIR " + "$SHARE_DIR/SIT" + ls);
-
- return sb.toString();
- }
-
- private String getSiteGrid() {
- StringBuilder sb = new StringBuilder();
-
- sb.append(ls + "#" + ls);
- sb.append("# set input variables" + ls);
- sb.append("#" + ls);
-
- sb.append("setenv INFILE1 \"EPICSites_Info.csv\"" + ls);
- sb.append(ls);
-
- sb.append(ls + "#" + ls);
- sb.append("# Set output variable" + ls);
- sb.append("#" + ls + ls);
- sb.append("if ( ! -e $SHARE_DIR/SITELIST.DAT ) rm -f $SHARE_DIR/SITELIST.DAT" + ls);
- sb.append("if ( ! -e $SIT_DIR ) mkdir -p $SIT_DIR" + ls);
- sb.append("if ( ! -e $WORK_DIR ) mkdir -p $WORK_DIR" + ls);
-
- sb.append(ls);
-
- String exe;
- exe = "$EPIC_DIR//util/siteCreate/SITE_FILE_CREATOR.exe";
-
- sb.append(ls + "#" + ls);
- sb.append("# Generate site files " + ls);
- sb.append("#" + ls );
- sb.append("time " + exe + ls );
- sb.append("if ( $status == 0 ) then " + ls);
- sb.append(" echo ==== Finished site creation step1. " + ls);
- sb.append("else " + ls);
- sb.append(" echo ==== Error site creation step1." + ls );
- sb.append(" exit 1 " + ls );
- sb.append("endif " + ls);
- sb.append(ls);
-
- outMessages += "Exectable1: $EPIC_DIR//util/siteCreate/SITE_FILE_CREATOR.exe" +ls;
- outMessages += "Outputs: 1. SITELIST.DAT ($SCEN_DIR/share_data)" +ls;
- outMessages += "Outputs: 2. All sitefiles ($SCEN_DIR//share_data/SIT)" +ls;
-
- return sb.toString();
- }
-
- private String getBeld4HUC8() {
- StringBuilder sb = new StringBuilder();
-
- sb.append("# Delineation Soil, Site and Crop fractions" + ls);
- sb.append("#" + ls);
- sb.append("# set input variables" + ls);
- sb.append("#" + ls);
-
- sb.append("setenv INFILE2 \"EPICSites_Crop.csv\"" + ls +ls);
-
- sb.append("# Set minimum crop acres for site selection " + ls );
- sb.append("setenv MINIMUM_CROP_ACRES " + minAcreas.getText() +ls +ls );
-
- sb.append("# Create directories for crops " + ls);
- sb.append("foreach crop ( HAY ALFALFA OTHGRASS BARLEY EBEANS CORNG CORNS " +
- " COTTON OATS PEANUTS POTATOES RICE RYE SORGHUMG SORGHUMS SOYBEANS " +
- " SWHEAT WWHEAT OTHER CANOLA BEANS )" +ls );
- sb.append(" if ( ! -e $SCEN_DIR/$crop ) mkdir -p $SCEN_DIR/$crop " + ls);
- sb.append("end" +ls );
-
- String exe;
- exe = "$EPIC_DIR/util/siteCreate/SITEBELD4HUC8.exe";
- sb.append("time " + exe + ls );
- sb.append("if ( $status == 0 ) then " + ls);
- sb.append(" echo ==== Finished site creation step2. " + ls);
- sb.append("else " + ls);
- sb.append(" echo ==== Error in site creation step2." + ls );
- sb.append("endif " + ls);
- sb.append("#" + ls + ls);
-
- outMessages += "Exectable2: $EPIC_DIR/util/siteCreate/SITEBELD4HUC8.exe"+ls;
- //outMessages += "Input: SITELIST.DAT "+ls;
- outMessages += "Outputs: crop list files, $SCEN_DIR/$CROP ${CROP}-LIST.DAT...."+ls+ls;
-
- return sb.toString();
- }
-
- @Override
- public void projectLoaded() {
- fields = (SiteFilesFields) app.getProject().getPage(fields.getName());
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if ( fields != null ){
- String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length()>0 )
- this.scenarioDir.setText(scenloc);
- else
- this.scenarioDir.setText(fields.getScenarioDir());
- runMessages.setText(fields.getMessage());
- minAcreas.setText(fields.getMinAcres()==null? "40.0":fields.getMinAcres());
- } else{
- newProjectCreated();
- }
- domain.setCMinAcres(null);
- }
-
- @Override
- public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( runMessages != null ) fields.setMessage(runMessages.getText());
- if ( minAcreas != null) fields.setMinAcres(minAcreas.getText());
- if ( runMessages != null ) fields.setMessage(runMessages.getText());
- domain.setCMinAcres(null);
- }
-
- @Override
- public void newProjectCreated() {
- domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- scenarioDir.setText(domain.getScenarioDir());
- runMessages.setText("");
- minAcreas.setText("40.0");
-
- if ( fields == null ) {
- fields = new SiteFilesFields();
- app.getProject().addPage(fields);
- }
- }
-
-}
+package gov.epa.festc.gui;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.proj.DomainFields;
+import gov.epa.festc.core.proj.SiteFilesFields;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.FileRunner;
+import gov.epa.festc.util.SpringLayoutGenerator;
+
+import java.awt.event.ActionEvent;
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.text.SimpleDateFormat;
+import java.util.Date;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.BoxLayout;
+import javax.swing.JButton;
+import javax.swing.JPanel;
+import javax.swing.JTextField;
+import javax.swing.SpringLayout;
+
+import simphony.util.messages.MessageCenter;
+
+public class UtilGenerateSiteFilesPanel extends UtilFieldsPanel implements PlotEventListener{
+ private static final long serialVersionUID = 1326060715078017117L;
+
+ private FestcApplication app;
+ private MessageCenter msg;
+ private SiteFilesFields fields;
+
+ private JTextField minAcreas;
+
+ public UtilGenerateSiteFilesPanel(FestcApplication application, MessageCenter msg) {
+ app = application;
+ init();
+ fields = new SiteFilesFields();
+ app.getProject().addPage(fields);
+ app.addPlotListener(this);
+ this.msg = msg;
+ add(createPanel());
+ }
+
+ private JPanel createPanel() {
+ JPanel mainPanel = new JPanel();
+ mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
+
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+
+ //this.scenarioDir = new JTextField(40);
+ JPanel minAcrePanel = new JPanel();
+ minAcreas = new JTextField(20);
+ minAcreas.setToolTipText("Default value is 0.0");
+ minAcrePanel.add(minAcreas);
+
+ JPanel buttonPanel = new JPanel();
+ JButton btn = new JButton(generateSiteFilesAction());
+ buttonPanel.add(btn);
+ buttonPanel.setBorder(BorderFactory.createEmptyBorder(30, 30, 30, 0));
+
+ layout.addLabelWidgetPair(Constants.LABEL_EPIC_SCENARIO, scenarioDirP, panel);
+ layout.addLabelWidgetPair("Minimum Crop Acres: ", minAcrePanel, panel);
+
+ layout.makeCompactGrid(panel, 2, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+
+ mainPanel.add(panel);
+ mainPanel.add(buttonPanel);
+ mainPanel.add(messageBox());
+ return mainPanel;
+ }
+
+ private Action generateSiteFilesAction() {
+ return new AbstractAction("Generate Site Files") {
+ private static final long serialVersionUID = 5558465823154735475L;
+
+ public void actionPerformed(ActionEvent e) {
+ try {
+
+ generateRunScript();
+
+ } catch (Exception exc) {
+ //msg.error("ERROR", exc);
+ app.showMessage("Run script", exc.getMessage());
+ }
+ }
+ };
+ }
+
+ private void generateRunScript() throws Exception {
+ String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
+ if (baseDir == null || baseDir.isEmpty())
+ throw new Exception("Base dir is empty, please specify in the configuration file!");
+
+ String scenarioDir = this.scenarioDir.getText();
+ validateScen(scenarioDir);
+
+ String minAcres = minAcreas.getText();
+ if (minAcres == null || minAcres.isEmpty())
+ throw new Exception("Minimum Crop Acres is not specified!");
+
+ String sMAcres = domain.getCMinAcres();
+ if (sMAcres == null || sMAcres.trim().isEmpty()) {
+ domain.setCMinAcres(minAcres);
+ sMAcres = minAcres;
+ }
+ else if (sMAcres != null && !sMAcres.trim().isEmpty()
+ && (Float.parseFloat(sMAcres))!=(Float.parseFloat(minAcres)) && app.allowDiffCheck())
+ throw new Exception("Current minimum acre "+minAcres+ " is inconsistent with previous one (" + sMAcres + ")");
+
+
+ try {
+ Float.parseFloat(minAcres);
+ }catch(NumberFormatException e) {
+ throw new Exception("Minimum Crop Acres is not a number!");
+ }
+
+ outMessages += "Epic base: " + baseDir + ls;
+ outMessages += "Scen directory: " + scenarioDir + ls;
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+
+ final String jobFile = writeRunScriptScript(baseDir, scenarioDir);
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir);
+ } else {
+ batchFile = null;
+ }
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ // final String batchFile = writeBatchFile(jobFile,
+ // scenarioDir);
+ runBatchScript(batchFile, jobFile);
+ }
+
+ }
+ });
+ populateThread.start();
+ }
+
+ // This is legacy code that has been moved to it's own method
+ protected void writeScriptFile(String file, String content) {
+
+ String mesg = "";
+
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(content);
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ // printStackTrace();
+ // g.error("Error generating EPIC script file", e);
+ app.showMessage("Write script", e.getMessage());
+ }
+
+ app.showMessage("Write script", mesg);
+ }
+
+ private void runScript(final String file) {
+ String log = file + ".log";
+
+ outMessages += "Script file: " + file + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+ FileRunner.runScript(file, log, msg);
+ }
+
+ private void runBatchScript(final String batchFile, final String jobFile) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qEpicSite = Constants.getProperty(Constants.QUEUE_EPIC_SITE, msg);
+
+ File script = new File(batchFile.replaceAll("\\\\", "\\\\\\\\"));
+
+ sb.append(qcmd + " " + qEpicSite + " -o " + log + " " + script.getAbsolutePath());
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
+ protected String writeBatchFile(String jobFile, String scenarioDir) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitEpicSiteFile_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
+
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+
+ private String writeRunScriptScript(
+ String baseDir,
+ String scenarioDir ) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+
+ String file = scenarioDir.trim() + "/scripts";
+ if ( !file.endsWith(System.getProperty("file.separator")))
+ file += System.getProperty("file.separator");
+ file += "generateEpicSiteFile_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append(getScirptHeader());
+ sb.append(getEnvironmentDef(baseDir, scenarioDir));
+ sb.append(getSiteGrid());
+ sb.append(getBeld4HUC8());
+
+ String mesg = "";
+
+ try {
+ File script = new File(file);
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(sb.toString());
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ //e.printStackTrace();
+ //msg.error("Error generating EPIC script file", e);
+ throw new Exception(e.getMessage());
+ }
+ app.showMessage("Write script", mesg);
+
+ return file;
+ }
+
+ private String getScirptHeader() {
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh -f" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to run Site Creation and HUC8 Utilities" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by: Fortran by Benson, Script by IE. 2010" + ls);
+ sb.append("# Modified by:" + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: SITE_FILE_CREATOR.exe and SITEBELD4HUC8.exe" + ls);
+ sb.append("# " + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+
+ return sb.toString();
+ }
+
+ private String getEnvironmentDef(String baseDir, String scenarioDir) {
+ StringBuilder sb = new StringBuilder();
+
+ sb.append(ls + "#" + ls);
+ sb.append("# Define environment variables" + ls);
+ sb.append("#" + ls + ls);
+
+ sb.append("setenv EPIC_DIR " + baseDir + ls);
+ sb.append("setenv SCEN_DIR " + scenarioDir + ls);
+ sb.append("setenv WORK_DIR " + scenarioDir + "/work_dir" +ls);
+ sb.append("setenv SHARE_DIR " + scenarioDir + "/share_data" + ls);
+ sb.append("setenv SIT_DIR " + "$SHARE_DIR/SIT" + ls);
+
+ return sb.toString();
+ }
+
+ private String getSiteGrid() {
+ StringBuilder sb = new StringBuilder();
+
+ sb.append(ls + "#" + ls);
+ sb.append("# set input variables" + ls);
+ sb.append("#" + ls);
+
+ sb.append("setenv INFILE1 \"EPICSites_Info.csv\"" + ls);
+ sb.append(ls);
+
+ sb.append(ls + "#" + ls);
+ sb.append("# Set output variable" + ls);
+ sb.append("#" + ls + ls);
+ sb.append("if ( ! -e $SHARE_DIR/SITELIST.DAT ) rm -f $SHARE_DIR/SITELIST.DAT" + ls);
+ sb.append("if ( ! -e $SIT_DIR ) mkdir -p $SIT_DIR" + ls);
+ sb.append("if ( ! -e $WORK_DIR ) mkdir -p $WORK_DIR" + ls);
+
+ sb.append(ls);
+
+ String exe;
+ exe = "$EPIC_DIR//util/siteCreate/SITE_FILE_CREATOR.exe";
+
+ sb.append(ls + "#" + ls);
+ sb.append("# Generate site files " + ls);
+ sb.append("#" + ls );
+ sb.append("time " + exe + ls );
+ sb.append("if ( $status == 0 ) then " + ls);
+ sb.append(" echo ==== Finished site creation step1. " + ls);
+ sb.append("else " + ls);
+ sb.append(" echo ==== Error site creation step1." + ls );
+ sb.append(" exit 1 " + ls );
+ sb.append("endif " + ls);
+ sb.append(ls);
+
+ outMessages += "Exectable1: $EPIC_DIR//util/siteCreate/SITE_FILE_CREATOR.exe" +ls;
+ outMessages += "Outputs: 1. SITELIST.DAT ($SCEN_DIR/share_data)" +ls;
+ outMessages += "Outputs: 2. All sitefiles ($SCEN_DIR//share_data/SIT)" +ls;
+
+ return sb.toString();
+ }
+
+ private String getBeld4HUC8() {
+ StringBuilder sb = new StringBuilder();
+
+ sb.append("# Delineation Soil, Site and Crop fractions" + ls);
+ sb.append("#" + ls);
+ sb.append("# set input variables" + ls);
+ sb.append("#" + ls);
+
+ sb.append("setenv INFILE2 \"EPICSites_Crop.csv\"" + ls +ls);
+
+ sb.append("# Set minimum crop acres for site selection " + ls );
+ sb.append("setenv MINIMUM_CROP_ACRES " + minAcreas.getText() +ls +ls );
+
+ sb.append("# Create directories for crops " + ls);
+ sb.append("foreach crop ( HAY ALFALFA OTHGRASS BARLEY EBEANS CORNG CORNS " +
+ " COTTON OATS PEANUTS POTATOES RICE RYE SORGHUMG SORGHUMS SOYBEANS " +
+ " SWHEAT WWHEAT OTHER CANOLA BEANS )" +ls );
+ sb.append(" if ( ! -e $SCEN_DIR/$crop ) mkdir -p $SCEN_DIR/$crop " + ls);
+ sb.append("end" +ls );
+
+ String exe;
+ exe = "$EPIC_DIR/util/siteCreate/SITEBELD4HUC8.exe";
+ sb.append("time " + exe + ls );
+ sb.append("if ( $status == 0 ) then " + ls);
+ sb.append(" echo ==== Finished site creation step2. " + ls);
+ sb.append("else " + ls);
+ sb.append(" echo ==== Error in site creation step2." + ls );
+ sb.append("endif " + ls);
+ sb.append("#" + ls + ls);
+
+ outMessages += "Exectable2: $EPIC_DIR/util/siteCreate/SITEBELD4HUC8.exe"+ls;
+ //outMessages += "Input: SITELIST.DAT "+ls;
+ outMessages += "Outputs: crop list files, $SCEN_DIR/$CROP ${CROP}-LIST.DAT...."+ls+ls;
+
+ return sb.toString();
+ }
+
+ @Override
+ public void projectLoaded() {
+ fields = (SiteFilesFields) app.getProject().getPage(fields.getName());
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ if ( fields != null ){
+ String scenloc = domain.getScenarioDir();
+ if (scenloc != null && scenloc.trim().length()>0 )
+ this.scenarioDir.setText(scenloc);
+ else
+ this.scenarioDir.setText(fields.getScenarioDir());
+ runMessages.setText(fields.getMessage());
+ minAcreas.setText(fields.getMinAcres()==null? "0.0":fields.getMinAcres());
+ } else{
+ newProjectCreated();
+ }
+ domain.setCMinAcres(null);
+ }
+
+ @Override
+ public void saveProjectRequested() {
+ if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
+ if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
+ if ( runMessages != null ) fields.setMessage(runMessages.getText());
+ if ( minAcreas != null) fields.setMinAcres(minAcreas.getText());
+ if ( runMessages != null ) fields.setMessage(runMessages.getText());
+ domain.setCMinAcres(null);
+ }
+
+ @Override
+ public void newProjectCreated() {
+ domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
+ scenarioDir.setText(domain.getScenarioDir());
+ runMessages.setText("");
+ minAcreas.setText("0.0");
+
+ if ( fields == null ) {
+ fields = new SiteFilesFields();
+ app.getProject().addPage(fields);
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/gui/UtilGenerateSoilMatchPanel.java b/festc_core/src/gov/epa/festc/gui/UtilGenerateSoilMatchPanel.java
index 6370122..ef10f4f 100644
--- a/festc_core/src/gov/epa/festc/gui/UtilGenerateSoilMatchPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/UtilGenerateSoilMatchPanel.java
@@ -33,13 +33,13 @@
import simphony.util.messages.MessageCenter;
public class UtilGenerateSoilMatchPanel extends UtilFieldsPanel implements PlotEventListener {
-
+
private FestcApplication app;
private MessageCenter msg;
private SoilFilesFields fields;
- private CropSelectionPanel cropSelectionPanel;
-
+ private CropSelectionPanel cropSelectionPanel;
+
public UtilGenerateSoilMatchPanel(FestcApplication application, MessageCenter msg) {
app = application;
fields = new SoilFilesFields();
@@ -48,31 +48,31 @@ public UtilGenerateSoilMatchPanel(FestcApplication application, MessageCenter ms
this.msg = msg;
add(createPanel());
}
-
+
private JPanel createPanel() {
- JPanel mainPanel = new JPanel();
+ JPanel mainPanel = new JPanel();
mainPanel.setLayout(new BoxLayout(mainPanel, BoxLayout.Y_AXIS));
-
+
mainPanel.add(scenPanel());
mainPanel.add(cropsPanel());
mainPanel.add(messageBox());
- return mainPanel;
+ return mainPanel;
}
-
- private JPanel cropsPanel(){
-
+
+ private JPanel cropsPanel() {
+
JPanel panel = new JPanel(new SpringLayout());
SpringLayoutGenerator layout = new SpringLayoutGenerator();
JPanel buttonPanel = new JPanel();
JButton btn = new JButton(runAction());
- btn.setPreferredSize(new Dimension(100,50));
+ btn.setPreferredSize(new Dimension(100, 50));
buttonPanel.add(btn);
buttonPanel.setBorder(BorderFactory.createEmptyBorder(70, 30, 70, 30));
this.cropSelectionPanel = new CropSelectionPanel(app);
layout.addWidgetPair(cropSelectionPanel, buttonPanel, panel);
layout.makeCompactGrid(panel, 1, 2, // number of rows and cols
10, 10, // initial X and Y
- 5, 5); // x and y pading
+ 5, 5); // x and y pading
return panel;
}
@@ -81,117 +81,359 @@ private Action runAction() {
private static final long serialVersionUID = 5558465823154735475L;
public void actionPerformed(ActionEvent e) {
- try {
+ try {
generateSoilMatchFiles();
} catch (Exception exc) {
- //msg.error("ERROR", exc);
+ // msg.error("ERROR", exc);
app.showMessage("Run script", exc.getMessage());
}
}
};
}
-
+
private void generateSoilMatchFiles() throws Exception {
String baseDir = Constants.getProperty(Constants.EPIC_HOME, msg);
- if (baseDir == null || baseDir.isEmpty())
+ if (baseDir == null || baseDir.isEmpty())
throw new Exception("Base dir is empty, please specify in the configuration file!");
-
+
String scenarioDir = this.scenarioDir.getText();
- if ( scenarioDir == null || scenarioDir.isEmpty())
+ if (scenarioDir == null || scenarioDir.isEmpty())
throw new Exception("Please select scenario dir first!");
-
+
String seCropsString = cropSelectionPanel.selectedItemTostring();
String[] seCrops = cropSelectionPanel.getSelectedCrops();
- if ( seCrops == null || seCrops.length == 0)
- throw new Exception("Please select crop(s) first!");
-
+ if (seCrops == null || seCrops.length == 0)
+ throw new Exception("Please select crop(s) first!");
+
outMessages += "Epic base: " + baseDir + ls;
outMessages += "Scen directory: " + scenarioDir + ls;
-
- final String file = writeRunScript(baseDir, scenarioDir, seCropsString);
-
+
+ final String jobFile = writeRunScript(baseDir, scenarioDir, seCropsString);
+ String cropNums = getChosenCropNums();
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ final String batchFile;
+ if (qcmd != null && !qcmd.trim().isEmpty()) {
+ batchFile = writeBatchFile(jobFile, scenarioDir);
+ } else {
+ batchFile = null;
+ }
+
Thread populateThread = new Thread(new Runnable() {
public void run() {
- runScript(file);
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ runScript(jobFile);
+ } else {
+ runBatchScript(batchFile, jobFile, cropNums);
+ }
}
});
populateThread.start();
}
-
+
private void runScript(final String file) {
String log = file + ".log";
-
+
outMessages += "Script file: " + file + ls;
outMessages += "Log file: " + log + ls;
runMessages.setText(outMessages);
runMessages.validate();
FileRunner.runScript(file, log, msg);
}
-
- protected String writeRunScript(
- String baseDir,
- String scenarioDir,
- String cropNames ) throws Exception {
-
- Date now = new Date(); // java.util.Date, NOT java.sql.Date or java.sql.Timestamp!
+
+ private void runBatchScript(final String batchFile, final String jobFile, final String chosenCrops) {
+ String log = jobFile + ".log";
+
+ outMessages += "Batch Script file: " + batchFile + ls;
+ outMessages += "Job Script file: " + jobFile + ls;
+ outMessages += "Log file: " + log + ls;
+ runMessages.setText(outMessages);
+ runMessages.validate();
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ StringBuilder sb = new StringBuilder();
+ String qEpicSoilMatch = Constants.getProperty(Constants.QUEUE_SOIL_MATCH, msg);
+ if (qcmd.contains("sbatch")) {
+ // SLURM
+ sb.append("sbatch --job-name=EPICSoilMatchArrayJob --output=runEpicSoilMatch_JobArray_%A_%a.out --array="
+ + chosenCrops + " " + qEpicSoilMatch + " " + batchFile + ls);
+ } else if (qcmd.contains("qsub")) {
+ // PBS
+ sb.append("qsub -N EPICSoilMatchArrayJob -t " + chosenCrops + " " + qEpicSoilMatch + " " + batchFile + ls);
+ } else if (qcmd.contains("bsub")) {
+ // LSF
+ sb.append("bsub -J EPICSoilMatchArrayJob[" + chosenCrops + "] " + qEpicSoilMatch + " " + batchFile + ls);
+ }
+
+ FileRunner.runScriptwCmd(batchFile, log, msg, sb.toString());
+ }
+
+ protected String writeRunScript(String baseDir, String scenarioDir, String cropNames) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
-
+
String file = scenarioDir.trim() + "/scripts";
- if ( !file.endsWith(System.getProperty("file.separator")))
- file += System.getProperty("file.separator");
+ if (!file.endsWith(System.getProperty("file.separator")))
+ file += System.getProperty("file.separator");
file += "runEpicSoilMatch_" + timeStamp + ".csh";
-
+
+ StringBuilder sb = new StringBuilder();
+ String scriptContent = null;
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
+ if (qcmd == null || qcmd.trim().isEmpty()) {
+ // no batch system
+ sb.append(getScirptHeader());
+ sb.append(getEnvironmentDef(baseDir, scenarioDir));
+ sb.append(getRunDef(cropNames));
+ scriptContent = sb.toString();
+ } else {
+ // assume batch system that supports job arrays (SLURM, LSF, etc)
+
+ // create job array script
+ // String taskScriptContent = createArrayTaskScript(baseDir,
+ // scenarioDir);
+ // String taskFile = scenarioDir.trim() + "/scripts";
+ // if (!taskFile.endsWith(System.getProperty("file.separator")))
+ // taskFile += System.getProperty("file.separator");
+ // taskFile += "runEpicSoilMatchCrop_" + timeStamp + ".csh";
+ // writeScriptFile(taskFile, taskScriptContent);
+ //
+ // scriptContent = createArraySubmitScript(taskFile, scenarioDir);
+
+ scriptContent = createArrayTaskScript(baseDir, scenarioDir);
+
+ }
+
+ // create submit script
+ writeScriptFile(file, scriptContent);
+
+ return file;
+ }
+
+ // private String createArraySubmitScript(String taskScript, String
+ // scenarioDir) throws Exception{
+ //
+ // StringBuilder sb = new StringBuilder();
+ // sb.append("#!/bin/csh -f" + ls);
+ // sb.append("#**************************************************************************************"
+ // + ls);
+ // sb.append("# Purpose: to submit batch job for job arrays" + ls);
+ // sb.append("# #" + ls);
+ // sb.append("# #" + ls);
+ // sb.append("#
+ // #***************************************************************************************"
+ // + ls);
+ // sb.append("# submit job array tasks"+ls);
+ //
+ // sb.append("set CROPSLIST = " + getChosenCropNums() + ls + ls);
+ //
+ // String qEpicSoilMatch = Constants.getProperty(Constants.QUEUE_SOIL_MATCH,
+ // msg);
+ // sb.append("sbatch --job-name=EPICSoilMatchArrayJob
+ // --output=submitEPICSoilMatch_JobArray_%A_%a.out --array=$CROPSLIST " +
+ // qEpicSoilMatch + " " + taskScript +ls);
+ //
+ // return sb.toString();
+ // }
+
+ private String createArrayTaskScript(String baseDir, String scenarioDir) throws Exception {
+
+ String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg).toLowerCase();
+ String arrayIdEnvVar = "";
+
+ if (qcmd.contains("sbatch")) {
+ // SLURM
+ arrayIdEnvVar = "$SLURM_ARRAY_TASK_ID";
+ } else if (qcmd.contains("qsub")) {
+ // PBS
+ arrayIdEnvVar = "$PBS_ARRAYID";
+ } else if (qcmd.contains("bsub")) {
+ // LSF
+ arrayIdEnvVar = "$LSB_JOBINDEX";
+ }
+
StringBuilder sb = new StringBuilder();
- sb.append(getScirptHeader());
+
+ // header
+ sb.append("#!/bin/csh -f" + ls);
+ sb.append("#**************************************************************************************" + ls);
+ sb.append("# Purpose: to run Soil Match Utility" + ls);
+ sb.append("# SLURM example cmd:" + ls);
+ sb.append(
+ "# sbatch --job-name=EPICSoilMatchArrayJob --output=submitEPICSoilMatch_JobArray_%A_%a.out --array=1,31 --time=2:00:00"
+ + ls);
+ sb.append("# /PATH_TO_SCRIPT/runEpicSoilMatch_TIMESTAMP.csh" + ls);
+ sb.append("# where 1,31 are rainfed (odd) crop numbers only" + ls);
+ sb.append("#" + ls);
+ sb.append("# Written by: Fortran by Benson, Original Script by IE. 2010" + ls);
+ sb.append("# Modified by: EMVL " + ls);
+ sb.append("#" + ls);
+ sb.append("# Program: SOILMATCH*.exe" + ls);
+ sb.append("# Needed environment variables included in the script file to run." + ls);
+ sb.append("# " + ls);
+ sb.append("#***************************************************************************************" + ls + ls);
+
+ // environmental variables
sb.append(getEnvironmentDef(baseDir, scenarioDir));
- sb.append(getRunDef(cropNames));
-
+
+ //
+ sb.append("set CROPS = (HAY ALFALFA OTHGRASS BARLEY EBEANS CORNG CORNS COTTON OATS PEANUTS POTATOES RICE RYE)"
+ + ls);
+ sb.append("set CROPS = ($CROPS SORGHUMG SORGHUMS SOYBEANS SWHEAT WWHEAT OTHER CANOLA BEANS)" + ls);
+
+ sb.append("# Generate soil match files" + ls + ls);
+ sb.append("# set input variables" + ls + ls);
+
+ // sb.append("@ rem = $SLURM_ARRAY_TASK_ID % 2" + ls);
+ sb.append("@ rem = " + arrayIdEnvVar + " % 2" + ls);
+ // sb.append("@ ind = ($SLURM_ARRAY_TASK_ID + $rem) / 2" + ls + ls);
+ sb.append("@ ind = (" + arrayIdEnvVar + " + $rem) / 2" + ls + ls);
+
+ sb.append("setenv CROP_NAME $CROPS[$ind]" + ls + ls);
+
+ sb.append("rm -rf $SCEN_DIR/$CROP_NAME/NONRISOIL*.DAT > & /dev/null" + ls);
+ sb.append("rm -rf $SCEN_DIR/$CROP_NAME/SOILSKM*.LOC > & /dev/null" + ls + ls);
+
+ sb.append("echo ==== Begin soil match run for crop $CROP_NAME" + ls);
+ sb.append("echo ==== Running step 1 ...." + ls);
+ sb.append("time $EXEC_DIR/SOILMATCH1ST.exe" + ls + ls);
+ sb.append("echo ==== Running step 2 ...." + ls);
+ sb.append("time $EXEC_DIR/SOILMATCH2ND.exe" + ls + ls);
+ sb.append("echo ==== Running step 3 ...." + ls);
+ sb.append("time $EXEC_DIR/SOILMATCH3RD.exe" + ls + ls);
+ sb.append("echo ==== Running step 4 ...." + ls);
+ sb.append("time $EXEC_DIR/SOILMATCH4TH.exe" + ls + ls);
+ sb.append("echo ==== Running step 5 ...." + ls);
+ sb.append("time $EXEC_DIR/SOILMATCH5TH.exe" + ls + ls);
+ sb.append("echo ==== Running step 6 ...." + ls);
+ sb.append("time $EXEC_DIR/SOILMATCH6TH.exe" + ls + ls);
+
+ sb.append("if ($status == 0 ) then" + ls);
+ sb.append(" echo ==== Finished soil match for crop $CROP_NAME." + ls);
+ sb.append("else" + ls);
+ sb.append(" echo ==status== Error in soil match run for crop $CROP_NAME." + ls);
+ sb.append(" exit 1" + ls);
+ sb.append("endif" + ls + ls);
+ sb.append("echo \" Merging *LOC to SOILLIST.DAT\"" + ls);
+ sb.append("cat $SCEN_DIR/$CROP_NAME/*LOC > $SCEN_DIR/$CROP_NAME/SOILLIST.DAT" + ls);
+
+ return sb.toString();
+
+ }
+
+ // This is legacy code that has been moved to it's own method
+ protected void writeScriptFile(String file, String content) {
+
String mesg = "";
-
+
try {
File script = new File(file);
-
- BufferedWriter out = new BufferedWriter(new FileWriter(script));
- out.write(sb.toString());
- out.close();
-
- mesg += "Script file: " + file + ls;
- boolean ok = script.setExecutable(true, false);
- mesg += "Set the script file to be executable: ";
- mesg += ok ? "ok." : "failed.";
-
- } catch (IOException e) {
- //e.printStackTrace();
- //msg.error("Error generating EPIC script file", e);
- throw new Exception(e.getMessage());
- }
-
- app.showMessage("Write script", mesg);
-
- return file;
+
+ BufferedWriter out = new BufferedWriter(new FileWriter(script));
+ out.write(content);
+ out.close();
+
+ mesg += "Script file: " + file + ls;
+ boolean ok = script.setExecutable(true, false);
+ mesg += "Set the script file to be executable: ";
+ mesg += ok ? "ok." : "failed.";
+
+ } catch (IOException e) {
+ // printStackTrace();
+ // g.error("Error generating EPIC script file", e);
+ app.showMessage("Write script", e.getMessage());
+ }
+
+ app.showMessage("Write script", mesg);
}
-
+
+ protected String writeBatchFile(String jobFile, String scenarioDir) throws Exception {
+
+ Date now = new Date(); // java.util.Date, NOT java.sql.Date or
+ // java.sql.Timestamp!
+ String timeStamp = new SimpleDateFormat("yyyyMMddHHmmss").format(now);
+ String batchFile = scenarioDir.trim() + "/scripts";
+ if (!batchFile.endsWith(System.getProperty("file.separator")))
+ batchFile += System.getProperty("file.separator");
+ batchFile += "submitEpicSoilMatch_" + timeStamp + ".csh";
+
+ StringBuilder sb = new StringBuilder();
+ sb.append("#!/bin/csh" + ls + ls);
+
+ // TODO - add #SBATCH options here
+
+ String qSingModule = Constants.getProperty(Constants.QUEUE_SINGULARITY_MODULE, msg);
+ if (qSingModule != null && !qSingModule.trim().isEmpty()) {
+ sb.append("module load " + qSingModule + ls);
+
+ String qSingImage = Constants.getProperty(Constants.QUEUE_SINGULARITY_IMAGE, msg);
+ String qSingBind = Constants.getProperty(Constants.QUEUE_SINGULARITY_BIND, msg);
+ if (qSingImage == null || qSingModule.trim().isEmpty()) {
+ throw new Exception("Singularity image path must be specified");
+ }
+ sb.append("set CONTAINER = " + qSingImage + ls);
+ sb.append("singularity exec");
+ if (qSingBind != null && !qSingBind.trim().isEmpty()) {
+ sb.append(" -B " + qSingBind);
+ }
+ sb.append(" $CONTAINER " + jobFile);
+ } else {
+ sb.append(jobFile);
+ }
+
+ writeScriptFile(batchFile, sb.toString());
+
+ return batchFile;
+ }
+
+ // returns comma separated list of chosen crop numbers to run
+ // This only returns one crop id (rainf), not both rainf and irr variations
+ private String getChosenCropNums() throws Exception {
+ String[] seCrops = cropSelectionPanel.getSelectedCrops();
+ if (seCrops == null || seCrops.length == 0)
+ throw new Exception("Please select crop(s) first!");
+ String crop = null;
+ String cropIDs = "";
+ for (int i = 0; i < seCrops.length; i++) {
+ crop = seCrops[i];
+ Integer cropID = Constants.CROPS.get(crop);
+ if (cropID == null || cropID <= 0)
+ throw new Exception("crop id is null for crop " + crop);
+ Integer cropIrID = cropID + 1;
+
+ if (i != 0) {
+ cropIDs += "," + cropID;
+ } else {
+ cropIDs = "" + cropID;
+ }
+ // cropIDs += "," + cropIrID;
+ }
+
+ return cropIDs;
+ }
+
private String getScirptHeader() {
StringBuilder sb = new StringBuilder();
-
+
sb.append("#!/bin/csh -f" + ls);
sb.append("#**************************************************************************************" + ls);
- sb.append("# Purpose: to run Soil Match Utility" + ls);
+ sb.append("# Purpose: to run Soil Match Utility" + ls);
sb.append("#" + ls);
sb.append("# Written by: Fortran by Benson, Script by IE. 2010" + ls);
- sb.append("# Modified by:" + ls);
+ sb.append("# Modified by:" + ls);
sb.append("#" + ls);
sb.append("# Program: SOILMATCH*.exe" + ls);
- sb.append("# Needed environment variables included in the script file to run." + ls);
+ sb.append("# Needed environment variables included in the script file to run." + ls);
sb.append("# " + ls);
sb.append("#***************************************************************************************" + ls + ls);
-
+
return sb.toString();
}
-
+
private String getEnvironmentDef(String baseDir, String scenarioDir) {
StringBuilder sb = new StringBuilder();
-
+
sb.append(ls + "#" + ls);
sb.append("# Define environment variables" + ls);
sb.append("#" + ls + ls);
@@ -203,69 +445,69 @@ private String getEnvironmentDef(String baseDir, String scenarioDir) {
sb.append("" + ls);
sb.append("set EXEC_DIR = " + baseDir + "/util/soilMatch" + ls);
sb.append("" + ls);
-
+
return sb.toString();
}
-
+
private String getRunDef(String cropNames) {
StringBuilder sb = new StringBuilder();
-
+
sb.append(ls + "#" + ls);
sb.append("# Generate soil match files " + ls);
- sb.append("#" + ls );
+ sb.append("#" + ls);
sb.append("# set input variables" + ls);
sb.append("set CROPS = " + cropNames + ls);
sb.append("foreach crop ($CROPS) " + ls);
sb.append(" setenv CROP_NAME $crop " + ls);
- sb.append(" rm -rf $SCEN_DIR/$CROP_NAME/NONRISOIL*.DAT " + ls );
- sb.append(" rm -rf $SCEN_DIR/$CROP_NAME/SOILSKM*.LOC " + ls +ls);
- sb.append(" echo ==== Begin soil match run for crop $CROP_NAME." +ls);
+ sb.append(" rm -rf $SCEN_DIR/$CROP_NAME/NONRISOIL*.DAT >& /dev/null " + ls);
+ sb.append(" rm -rf $SCEN_DIR/$CROP_NAME/SOILSKM*.LOC >& /dev/null" + ls + ls);
+ sb.append(" echo ==== Begin soil match run for crop $CROP_NAME." + ls);
sb.append(" echo ==== Running step 1 .... " + ls);
- sb.append(" time $EXEC_DIR/SOILMATCH1ST.exe" + ls );
-
+ sb.append(" time $EXEC_DIR/SOILMATCH1ST.exe" + ls);
+
sb.append(" " + ls);
sb.append(" echo ==== Running step 2 .... " + ls);
- sb.append(" time $EXEC_DIR/SOILMATCH2ND.exe" + ls );
-
+ sb.append(" time $EXEC_DIR/SOILMATCH2ND.exe" + ls);
+
sb.append(" " + ls);
sb.append(" echo ==== Running step 3 .... " + ls);
- sb.append(" time $EXEC_DIR/SOILMATCH3RD.exe" + ls );
-
+ sb.append(" time $EXEC_DIR/SOILMATCH3RD.exe" + ls);
+
sb.append(" " + ls);
sb.append(" echo ==== Running step 4 .... " + ls);
- sb.append(" time $EXEC_DIR/SOILMATCH4TH.exe" + ls );
-
+ sb.append(" time $EXEC_DIR/SOILMATCH4TH.exe" + ls);
+
sb.append(" " + ls);
sb.append(" echo ==== Running step 5 .... " + ls);
- sb.append(" time $EXEC_DIR/SOILMATCH5TH.exe" + ls );
-
+ sb.append(" time $EXEC_DIR/SOILMATCH5TH.exe" + ls);
+
sb.append(" " + ls);
sb.append(" echo ==== Running step 6 .... " + ls);
- sb.append(" time $EXEC_DIR/SOILMATCH6TH.exe" + ls );
-
+ sb.append(" time $EXEC_DIR/SOILMATCH6TH.exe" + ls);
+
sb.append(" if ( $status == 0 ) then " + ls);
sb.append(" echo ==== Finished soil match run for crop $CROP_NAME. " + ls);
sb.append(" else " + ls);
- sb.append(" echo ==status== Error in soil match run for crop $CROP_NAME. "+ ls + ls);
- sb.append(" exit 1 " + ls );
+ sb.append(" echo ==status== Error in soil match run for crop $CROP_NAME. " + ls + ls);
+ sb.append(" exit 1 " + ls);
sb.append(" endif " + ls);
sb.append(" " + ls);
sb.append(" echo \" Merging *LOC to SOILLIST.DAT\"" + ls);
sb.append(" cat $SCEN_DIR/$CROP_NAME/*LOC > $SCEN_DIR/$CROP_NAME/SOILLIST.DAT" + ls);
sb.append("end " + ls);
sb.append(ls);
-
-// outMessages += " Inputs: ALL-CULTIVATED10-12-09.LST" + ls;
-// outMessages += " NRI-ALL-HUC8S-ALLCROPS.prn" + ls;
-// outMessages += " HUC8_SITE_INFO-2REV.prn" + ls;
-// outMessages += " NRI-crop-codes-BELD4-codes.prn" + ls;
-// outMessages += " HUC8NRICROPSOIL.DAT" + ls;
-// outMessages += " HUCSITELATLONG.DAT" + ls;
+
+ // outMessages += " Inputs: ALL-CULTIVATED10-12-09.LST" + ls;
+ // outMessages += " NRI-ALL-HUC8S-ALLCROPS.prn" + ls;
+ // outMessages += " HUC8_SITE_INFO-2REV.prn" + ls;
+ // outMessages += " NRI-crop-codes-BELD4-codes.prn" + ls;
+ // outMessages += " HUC8NRICROPSOIL.DAT" + ls;
+ // outMessages += " HUCSITELATLONG.DAT" + ls;
outMessages += " Step 1 output: $SCEN_DIR/$CROP SOILSKM1.LOC" + ls;
- outMessages += " Step 2 output: $SCEN_DIR/$CROP SOILSKM2.LOC" + ls;
- outMessages += " ... " ;
- outMessages += " Final output : $SCEN_DIR/$CROP *.LOC > SOILLIST.DAT" + ls;
-
+ outMessages += " Step 2 output: $SCEN_DIR/$CROP SOILSKM2.LOC" + ls;
+ outMessages += " ... ";
+ outMessages += " Final output : $SCEN_DIR/$CROP *.LOC > SOILLIST.DAT" + ls;
+
return sb.toString();
}
@@ -273,24 +515,27 @@ private String getRunDef(String cropNames) {
public void projectLoaded() {
fields = (SoilFilesFields) app.getProject().getPage(fields.getName());
domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
- if ( fields != null ){
+ if (fields != null) {
String scenloc = domain.getScenarioDir();
- if (scenloc != null && scenloc.trim().length()>0 )
+ if (scenloc != null && scenloc.trim().length() > 0)
this.scenarioDir.setText(scenloc);
- else
+ else
this.scenarioDir.setText(fields.getScenarioDir());
runMessages.setText(fields.getMessage());
- }else{
+ } else {
newProjectCreated();
}
-
+
}
@Override
public void saveProjectRequested() {
- if ( scenarioDir != null ) domain.setScenarioDir(scenarioDir.getText());
- if ( scenarioDir != null ) fields.setScenarioDir(scenarioDir.getText());
- if ( runMessages != null ) fields.setMessage(runMessages.getText());
+ if (scenarioDir != null)
+ domain.setScenarioDir(scenarioDir.getText());
+ if (scenarioDir != null)
+ fields.setScenarioDir(scenarioDir.getText());
+ if (runMessages != null)
+ fields.setMessage(runMessages.getText());
}
@Override
@@ -298,9 +543,9 @@ public void newProjectCreated() {
domain = (DomainFields) app.getProject().getPage(DomainFields.class.getCanonicalName());
scenarioDir.setText(domain.getScenarioDir());
runMessages.setText("");
- if ( fields == null ) {
+ if (fields == null) {
fields = new SoilFilesFields();
app.getProject().addPage(fields);
}
- }
+ }
}
diff --git a/festc_core/src/gov/epa/festc/gui/ViewFileDialog.java b/festc_core/src/gov/epa/festc/gui/ViewFileDialog.java
index a7e2741..499d8f3 100644
--- a/festc_core/src/gov/epa/festc/gui/ViewFileDialog.java
+++ b/festc_core/src/gov/epa/festc/gui/ViewFileDialog.java
@@ -1,269 +1,269 @@
-package gov.epa.festc.gui;
-
-import gov.epa.festc.core.FestcApplication;
-
-import java.awt.BorderLayout;
-import java.awt.Component;
-import java.awt.Container;
-import java.awt.Dimension;
-import java.awt.Frame;
-import java.awt.Point;
-import java.awt.Toolkit;
-import java.awt.event.ActionEvent;
-import java.io.BufferedReader;
-import java.io.BufferedWriter;
-import java.io.File;
-import java.io.FileReader;
-import java.io.FileWriter;
-import java.io.IOException;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.JButton;
-import javax.swing.JComponent;
-import javax.swing.JDialog;
-import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-import javax.swing.JTextArea;
-
-public class ViewFileDialog extends JDialog {
- private static final long serialVersionUID = 712640590623729433L;
- private File file;
- private JTextArea text;
-
- private boolean editable = false;
- private int maxWidth, preferedWidth;
- private int maxHeight, preferedHeight;
- private FestcApplication app;
-
- ViewFileDialog() {
- super.setIconImage(Toolkit.getDefaultToolkit().getImage(getClass().getResource("/epa_logo.JPG")));
- }
-
- ViewFileDialog(Frame parent, String title, File file, boolean editable) {
- super(parent);
- super.setIconImage(Toolkit.getDefaultToolkit().getImage(getClass().getResource("/epa_logo.JPG")));
-
- this.file = file;
- this.editable = editable;
-
- Container contentPane = getContentPane();
- contentPane.setLayout(new BorderLayout(5, 5)); // Border Layout does not respect maxSize
- //contentPane.setLayout(new BoxLayout(contentPane, BoxLayout.Y_AXIS));
- contentPane.add(createScrollTextPane(file));
- contentPane.add(createButtonsPanel(), BorderLayout.SOUTH);
- //contentPane.add(createButtonsPanel());
- setTitle(title);
-
- Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
- maxWidth = (int) (screenSize.getWidth()*0.7);
- maxHeight = (int) (screenSize.getHeight()*0.7);
- preferedWidth = (int) (screenSize.getWidth()/3);
- preferedHeight = (int) (screenSize.getHeight()/2);
-
- setMinimumSize(new Dimension(150,350));
- setPreferredSize(new Dimension(preferedWidth,preferedHeight));
- setMaximumSize(new Dimension(maxWidth,maxHeight));
- setSize(preferedWidth, preferedHeight);
-
-// System.out.println(preferedWidth);
-// System.out.println(preferedHeight);
-
- if (parent != null) {
- //setPreferredSize(parent.getSize());
- setLocation(getPointToCenter(parent));
- }
-
- pack();
- setModal(true);
- }
-
- private JComponent createScrollTextPane(File file) {
- text = new JTextArea();
- text.setText(getFileContent(file));
- text.setEditable(this.editable);
- text.setMaximumSize(new Dimension(this.maxWidth,this.maxHeight));
- ScrollablePanel panel = new ScrollablePanel();
- panel.add(text);
- //panel.setScrollableWidth( ScrollablePanel.ScrollableSizeHint.FIT );
- panel.setScrollableBlockIncrement(
- ScrollablePanel.VERTICAL, ScrollablePanel.IncrementType.PERCENT, 200);
- panel.setScrollableBlockIncrement(
- ScrollablePanel.HORIZONTAL, ScrollablePanel.IncrementType.PERCENT, 200);
- //return panel;
- //JScrollPane scroll = new JScrollPane(text);
- JScrollPane scroll = new JScrollPane(panel);
- scroll.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
- scroll.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
- scroll.setMaximumSize(new Dimension(this.maxWidth,this.maxHeight));
- scroll.setPreferredSize(new Dimension(this.preferedWidth,this.preferedHeight));
-
- return scroll;
- }
-
- private void saveToFile() throws IOException{
- if ( file == null) {
- return;
- }
-
- BufferedWriter writer = new BufferedWriter( new FileWriter(file));
- String content = text.getText();
- if (writer!=null) {
- writer.write( content);
- writer.flush();
- writer.close();
- }
- }
-
- private String getFileContent(File file) {
- StringBuilder sb = new StringBuilder();
-
- if (file == null || !file.exists()) {
- return sb.toString();
- }
-
- BufferedReader reader = null;
- String line = null;
-
- try {
- reader = new BufferedReader(new FileReader(file));
- while ((line = reader.readLine()) != null)
- sb.append(line + "\n");
- } catch (IOException e) {
- sb.append("Error reading file!\n");
- } finally {
- if (reader != null)
- try {
- reader.close();
- } catch (IOException e) {
- sb.append("Error closing file. " + e.getMessage() + "\n");
- }
- }
-
- return sb.toString();
- }
-
- private Action save() {
- return new AbstractAction("Save") {
-
- /**
- *
- */
- private static final long serialVersionUID = 3366464532536102377L;
-
- public void actionPerformed(ActionEvent e) {
-
- try {
- saveToFile();
- } catch (Exception ex) {
- app.showMessage("Save file", ex.getMessage());
- }
-
- }
- };
- }
-
- private JPanel createButtonsPanel() {
- JPanel container = new JPanel();
-
- if ( this.editable) {
- JButton saveButton = new JButton(" Save ");
- saveButton.addActionListener(save());
- container.add(saveButton);
- JButton closeButton = new JButton(" Close ");
- closeButton.addActionListener(close());
- container.add(closeButton);
- } else {
- JButton closeButton = new JButton(" Close ");
- closeButton.addActionListener(close());
- container.add(closeButton);
- }
-
-// JButton saveButton = new JButton("Save");
-// saveButton.addActionListener(saveFileAction());
-// container.add(saveButton);
-//
-// JButton saveAsButton = new JButton("Save As...");
-// saveAsButton.setMargin(new Insets(2, 4, 2, 4));
-// saveAsButton.addActionListener(saveAsAction());
-// container.add(saveAsButton);
-
- return container;
- }
-
- private Action close() {
- return new AbstractAction() {
- private static final long serialVersionUID = 751779481914111010L;
-
- public void actionPerformed(ActionEvent e) {
- dispose();
- }
- };
- }
-
- public static Point getPointToCenter(Component comp) {
- Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
-
- if (comp == null) {
- return new Point((int)screenSize.getWidth()/2,(int)screenSize.getHeight()/2);
- }
-
- Dimension frameSize = comp.getSize();
-
- if (frameSize.height > screenSize.height) {
- frameSize.height = screenSize.height;
- }
-
- if (frameSize.width > screenSize.width) {
- frameSize.width = screenSize.width;
- }
-
- return new Point( (screenSize.width - frameSize.width) / 2,
- (screenSize.height - frameSize.height) / 2);
- }
-
- // do not use the following now - get back to it later!!
- /*
- public static void main(String[] args) {
- SwingUtilities.invokeLater(new Runnable() {
-
- @Override
- public void run() {
- new ViewFileDialog().makeUI();
- }
- });
- }
-
- public void makeUI() {
- final JFrame frame = new ViewFileDialog("") {
-
- @Override
- public void paint(Graphics g) {
- Dimension d = getSize();
- Dimension m = getMaximumSize();
- boolean resize = d.width > m.width || d.height > m.height;
- d.width = Math.min(m.width, d.width);
- d.height = Math.min(m.height, d.height);
- if (resize) {
- Point p = getLocation();
- setVisible(false);
- setSize(d);
- setLocation(p);
- setVisible(true);
- }
- super.paint(g);
- }
- };
- frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOS E);
- frame.setSize(400, 400);
- frame.setMaximumSize(new Dimension(500, 500));
- frame.setMinimumSize(new Dimension(300, 300));
- frame.setLocationRelativeTo(null);
- frame.setVisible(true);
- }
-
- }
- */
-
-}
-
+package gov.epa.festc.gui;
+
+import gov.epa.festc.core.FestcApplication;
+
+import java.awt.BorderLayout;
+import java.awt.Component;
+import java.awt.Container;
+import java.awt.Dimension;
+import java.awt.Frame;
+import java.awt.Point;
+import java.awt.Toolkit;
+import java.awt.event.ActionEvent;
+import java.io.BufferedReader;
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileReader;
+import java.io.FileWriter;
+import java.io.IOException;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.JButton;
+import javax.swing.JComponent;
+import javax.swing.JDialog;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.JTextArea;
+
+public class ViewFileDialog extends JDialog {
+ private static final long serialVersionUID = 712640590623729433L;
+ private File file;
+ private JTextArea text;
+
+ private boolean editable = false;
+ private int maxWidth, preferedWidth;
+ private int maxHeight, preferedHeight;
+ private FestcApplication app;
+
+ ViewFileDialog() {
+ super.setIconImage(Toolkit.getDefaultToolkit().getImage(getClass().getResource("/epa_logo.JPG")));
+ }
+
+ ViewFileDialog(Frame parent, String title, File file, boolean editable) {
+ super(parent);
+ super.setIconImage(Toolkit.getDefaultToolkit().getImage(getClass().getResource("/epa_logo.JPG")));
+
+ this.file = file;
+ this.editable = editable;
+
+ Container contentPane = getContentPane();
+ contentPane.setLayout(new BorderLayout(5, 5)); // Border Layout does not respect maxSize
+ //contentPane.setLayout(new BoxLayout(contentPane, BoxLayout.Y_AXIS));
+ contentPane.add(createScrollTextPane(file));
+ contentPane.add(createButtonsPanel(), BorderLayout.SOUTH);
+ //contentPane.add(createButtonsPanel());
+ setTitle(title);
+
+ Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
+ maxWidth = (int) (screenSize.getWidth()*0.7);
+ maxHeight = (int) (screenSize.getHeight()*0.7);
+ preferedWidth = (int) (screenSize.getWidth()/3);
+ preferedHeight = (int) (screenSize.getHeight()/2);
+
+ setMinimumSize(new Dimension(150,350));
+ setPreferredSize(new Dimension(preferedWidth,preferedHeight));
+ setMaximumSize(new Dimension(maxWidth,maxHeight));
+ setSize(preferedWidth, preferedHeight);
+
+// System.out.println(preferedWidth);
+// System.out.println(preferedHeight);
+
+ if (parent != null) {
+ //setPreferredSize(parent.getSize());
+ setLocation(getPointToCenter(parent));
+ }
+
+ pack();
+ setModal(true);
+ }
+
+ private JComponent createScrollTextPane(File file) {
+ text = new JTextArea();
+ text.setText(getFileContent(file));
+ text.setEditable(this.editable);
+ text.setMaximumSize(new Dimension(this.maxWidth,this.maxHeight));
+ ScrollablePanel panel = new ScrollablePanel();
+ panel.add(text);
+ //panel.setScrollableWidth( ScrollablePanel.ScrollableSizeHint.FIT );
+ panel.setScrollableBlockIncrement(
+ ScrollablePanel.VERTICAL, ScrollablePanel.IncrementType.PERCENT, 200);
+ panel.setScrollableBlockIncrement(
+ ScrollablePanel.HORIZONTAL, ScrollablePanel.IncrementType.PERCENT, 200);
+ //return panel;
+ //JScrollPane scroll = new JScrollPane(text);
+ JScrollPane scroll = new JScrollPane(panel);
+ scroll.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
+ scroll.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
+ scroll.setMaximumSize(new Dimension(this.maxWidth,this.maxHeight));
+ scroll.setPreferredSize(new Dimension(this.preferedWidth,this.preferedHeight));
+
+ return scroll;
+ }
+
+ private void saveToFile() throws IOException{
+ if ( file == null) {
+ return;
+ }
+
+ BufferedWriter writer = new BufferedWriter( new FileWriter(file));
+ String content = text.getText();
+ if (writer!=null) {
+ writer.write( content);
+ writer.flush();
+ writer.close();
+ }
+ }
+
+ private String getFileContent(File file) {
+ StringBuilder sb = new StringBuilder();
+
+ if (file == null || !file.exists()) {
+ return sb.toString();
+ }
+
+ BufferedReader reader = null;
+ String line = null;
+
+ try {
+ reader = new BufferedReader(new FileReader(file));
+ while ((line = reader.readLine()) != null)
+ sb.append(line + "\n");
+ } catch (IOException e) {
+ sb.append("Error reading file!\n");
+ } finally {
+ if (reader != null)
+ try {
+ reader.close();
+ } catch (IOException e) {
+ sb.append("Error closing file. " + e.getMessage() + "\n");
+ }
+ }
+
+ return sb.toString();
+ }
+
+ private Action save() {
+ return new AbstractAction("Save") {
+
+ /**
+ *
+ */
+ private static final long serialVersionUID = 3366464532536102377L;
+
+ public void actionPerformed(ActionEvent e) {
+
+ try {
+ saveToFile();
+ } catch (Exception ex) {
+ app.showMessage("Save file", ex.getMessage());
+ }
+
+ }
+ };
+ }
+
+ private JPanel createButtonsPanel() {
+ JPanel container = new JPanel();
+
+ if ( this.editable) {
+ JButton saveButton = new JButton(" Save ");
+ saveButton.addActionListener(save());
+ container.add(saveButton);
+ JButton closeButton = new JButton(" Close ");
+ closeButton.addActionListener(close());
+ container.add(closeButton);
+ } else {
+ JButton closeButton = new JButton(" Close ");
+ closeButton.addActionListener(close());
+ container.add(closeButton);
+ }
+
+// JButton saveButton = new JButton("Save");
+// saveButton.addActionListener(saveFileAction());
+// container.add(saveButton);
+//
+// JButton saveAsButton = new JButton("Save As...");
+// saveAsButton.setMargin(new Insets(2, 4, 2, 4));
+// saveAsButton.addActionListener(saveAsAction());
+// container.add(saveAsButton);
+
+ return container;
+ }
+
+ private Action close() {
+ return new AbstractAction() {
+ private static final long serialVersionUID = 751779481914111010L;
+
+ public void actionPerformed(ActionEvent e) {
+ dispose();
+ }
+ };
+ }
+
+ public static Point getPointToCenter(Component comp) {
+ Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
+
+ if (comp == null) {
+ return new Point((int)screenSize.getWidth()/2,(int)screenSize.getHeight()/2);
+ }
+
+ Dimension frameSize = comp.getSize();
+
+ if (frameSize.height > screenSize.height) {
+ frameSize.height = screenSize.height;
+ }
+
+ if (frameSize.width > screenSize.width) {
+ frameSize.width = screenSize.width;
+ }
+
+ return new Point( (screenSize.width - frameSize.width) / 2,
+ (screenSize.height - frameSize.height) / 2);
+ }
+
+ // do not use the following now - get back to it later!!
+ /*
+ public static void main(String[] args) {
+ SwingUtilities.invokeLater(new Runnable() {
+
+ @Override
+ public void run() {
+ new ViewFileDialog().makeUI();
+ }
+ });
+ }
+
+ public void makeUI() {
+ final JFrame frame = new ViewFileDialog("") {
+
+ @Override
+ public void paint(Graphics g) {
+ Dimension d = getSize();
+ Dimension m = getMaximumSize();
+ boolean resize = d.width > m.width || d.height > m.height;
+ d.width = Math.min(m.width, d.width);
+ d.height = Math.min(m.height, d.height);
+ if (resize) {
+ Point p = getLocation();
+ setVisible(false);
+ setSize(d);
+ setLocation(p);
+ setVisible(true);
+ }
+ super.paint(g);
+ }
+ };
+ frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOS E);
+ frame.setSize(400, 400);
+ frame.setMaximumSize(new Dimension(500, 500));
+ frame.setMinimumSize(new Dimension(300, 300));
+ frame.setLocationRelativeTo(null);
+ frame.setVisible(true);
+ }
+
+ }
+ */
+
+}
+
diff --git a/festc_core/src/gov/epa/festc/gui/VisualizationPanel.java b/festc_core/src/gov/epa/festc/gui/VisualizationPanel.java
index 4963894..a847d7b 100644
--- a/festc_core/src/gov/epa/festc/gui/VisualizationPanel.java
+++ b/festc_core/src/gov/epa/festc/gui/VisualizationPanel.java
@@ -1,337 +1,337 @@
-package gov.epa.festc.gui;
-
-import gov.epa.festc.core.FestcApplication;
-import gov.epa.festc.core.proj.SiteFilesFields;
-import gov.epa.festc.core.proj.VisualizationFields;
-import gov.epa.festc.util.Constants;
-import gov.epa.festc.util.SpringLayoutGenerator;
-
-import java.awt.BorderLayout;
-import java.awt.Font;
-import java.awt.event.ActionEvent;
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.BorderFactory;
-import javax.swing.ButtonGroup;
-import javax.swing.JButton;
-import javax.swing.JFileChooser;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JRadioButton;
-import javax.swing.JTextField;
-import javax.swing.SpringLayout;
-import javax.swing.SwingConstants;
-
-import simphony.util.messages.MessageCenter;
-
-public class VisualizationPanel extends JPanel implements PlotEventListener {
- private static final long serialVersionUID = 7114847591403108679L;
- private JTextField mcipFile;
- private JButton mcipFileBrowser;
- private JTextField beldFile;
- private JButton beldFileBrowser;
- private JTextField epicFile;
- private JButton epicFileBrowser;
- private JRadioButton mcipButton;
- private JRadioButton beldButton;
- private JRadioButton epicButton;
- private MessageCenter msg;
- private FestcApplication app;
- private VisualizationFields fields;
-
- public VisualizationPanel(FestcApplication application) {
- app = application;
- msg = app.getMessageCenter();
- fields = new VisualizationFields();
- app.getProject().addPage(fields);
- app.addPlotListener(this);
- add(createPanel());
- }
-
- private JPanel createPanel() {
- JPanel main = new JPanel(new BorderLayout());
- main.add(getNorthPanel(), BorderLayout.NORTH);
- main.add(getCenterPanel(), BorderLayout.CENTER);
- main.add(getSouthPanel(), BorderLayout.SOUTH);
- return main;
- }
-
- private JPanel getNorthPanel() {
- JPanel panel = new JPanel();
- JLabel title = new JLabel(Constants.VISU, SwingConstants.CENTER);
- title.setFont(new Font("Default", Font.BOLD, 20));
-
- panel.add(title);
- panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 60, 0));
-
- return panel;
- }
-
- private JPanel getSouthPanel() {
- JPanel panel = new JPanel();
- JButton display = new JButton(displayAction());
- panel.add(display);
-
- panel.setBorder(BorderFactory.createEmptyBorder(60, 0, 10, 0));
-
- return panel;
- }
-
- private JPanel getCenterPanel() {
- JPanel panel = new JPanel(new SpringLayout());
- SpringLayoutGenerator layout = new SpringLayoutGenerator();
-
- mcipButton = new JRadioButton("MCIP Data:");
- beldButton = new JRadioButton("Model Grid BELD Data:");
- epicButton = new JRadioButton("EPIC Output Data:");
- ButtonGroup group = new ButtonGroup();
- epicButton.setSelected(true);
- group.add(mcipButton);
- group.add(beldButton);
- group.add(epicButton);
-
- JPanel mcip = new JPanel();
- mcipFile = new JTextField(40);
- mcipFileBrowser = new JButton(browseAction("MCIP data file", mcipFile));
- mcip.add(mcipFile);
- mcip.add(mcipFileBrowser);
-
- JPanel beld = new JPanel();
- beldFile = new JTextField(40);
- beld.add(beldFile);
- beldFileBrowser = new JButton(browseAction("BELD data file", beldFile));
- beld.add(beldFileBrowser);
-
- JPanel epic = new JPanel();
- epicFile = new JTextField(40);
- epicFileBrowser = new JButton(browseAction("EPIC data file", epicFile));
- epic.add(epicFile);
- epic.add(epicFileBrowser);
-
-// String[] vars = new String[] { "Select a variable...",
-// "CANOPY(Percent)", "IMPERV(Percent)", "LANDMASK(None)",
-// "LU_INDEX(Category)", "XLAT_M(degrees latitude)",
-// "XLONG_M(degrees longitude" };
-// JComboBox varBox = new JComboBox(vars);
-// epic.add(varBox);
-
- layout.addWidgetPair(mcipButton, mcip, panel);
- layout.addWidgetPair(beldButton, beld, panel);
- layout.addWidgetPair(epicButton, epic, panel);
-
- layout.makeCompactGrid(panel, 3, 2, // number of rows and cols
- 10, 10, // initial X and Y
- 5, 5); // x and y pading
-
- return panel;
- }
-
- private Action displayAction() {
- return new AbstractAction("Display") {
- private static final long serialVersionUID = 8505323087261015010L;
-
- public void actionPerformed(ActionEvent e) {
- String temp = epicFile.getText();
-
- if (beldButton.isSelected())
- temp = beldFile.getText();
-
- if (mcipButton.isSelected())
- temp = mcipFile.getText();
-
- if (temp == null || temp.trim().isEmpty())
- return;
-
- temp = temp.trim();
-
- File file = new File(temp);
-
- if (!file.isFile() || !file.exists())
- return;
-
- final String filePath = temp;
-
- Thread populateThread = new Thread(new Runnable() {
- public void run() {
- callVerdi(filePath);
- }
- });
- populateThread.start();
- }
- };
- }
-
- private Action browseAction(final String name, final JTextField text) {
- return new AbstractAction("Browse...") {
- private static final long serialVersionUID = 0L;
-
- public void actionPerformed(ActionEvent e) {
- JFileChooser chooser;
- File file = new File(text.getText());
-
- if (file != null && file.exists())
- chooser = new JFileChooser(file);
- else
- chooser = new JFileChooser(app.getCurrentDir());
-
- chooser.setDialogTitle("Please select the " + name);
-
- int option = chooser.showDialog(VisualizationPanel.this,
- "Select");
- if (option == JFileChooser.APPROVE_OPTION) {
- File selected = chooser.getSelectedFile();
- text.setText("" + selected);
- app.setCurrentDir(selected.getParentFile());
- }
- }
- };
- }
-
- private void callVerdi(final String file) {
- String visProgHome = Constants.getProperty(Constants.VISUAL_PROGRAM_HOME, msg);
- String visProg = Constants.getProperty(Constants.VISUAL_PROGRAM, msg);
- File ncfile = new File(file.replaceAll("\\\\", "\\\\\\\\"));
- ProcessBuilder pb = null;
- String cmd = visProgHome.replaceAll("\\\\", "\\\\\\\\");
-
- String osName = System.getProperty("os.name");
- if (osName.equals("Linux") || osName.trim().equalsIgnoreCase("Mac OS X")) {
- cmd += "/" + visProg + " " + ncfile;
- System.out.println("Command: " + cmd);
- pb = new ProcessBuilder("csh", "-c", cmd);
- }
-
- // set up the working directory.
- pb.directory(ncfile.getParentFile());
-
- // merge child's error and normal output streams.
- pb.redirectErrorStream(true);
-
- Process p = null;
-
- try {
- p = pb.start();
- final InputStream es = p.getErrorStream();
- final InputStream is = p.getInputStream();
-
- // spawn two threads to handle I/O with child while we wait for it
- // to complete.
- Thread esthread = new Thread(new Runnable() {
- public void run() {
- readMsg(msg, es, "ERROR");
- }
- });
- esthread.start();
-
- Thread isthread = new Thread(new Runnable() {
- public void run() {
- readMsg(msg, is, "INPUT");
- }
- });
- isthread.start();
-
-
- if (Constants.DEBUG) {
- System.out.println("Verdi starting Process started: " + p.toString());
- msg.info("Verdi starting Process started: " + p.toString());
- }
-
- p.waitFor();
- es.close();
- is.close();
-
- if (Constants.DEBUG) {
- System.out.println("Verdi starting Process finished.");
- msg.info("Verdi starting Process finished.");
- }
- } catch (IOException e) {
- System.out.println("Error happened: " + e.getMessage());
- e.printStackTrace();
- }
- catch (InterruptedException e) {
- Thread.currentThread().interrupt();
- System.out.println("Interrupted: " + e.getMessage());
- e.printStackTrace();
- }
- catch (Exception e) {
- System.out.println("Error happened: " + e.getMessage());
- e.printStackTrace();
- }
- finally {
- if (p != null) {
- try {
- p.getErrorStream().close();
- p.getInputStream().close();
- } catch (IOException e) {
- //
- }
- }
- }
- }
-
- private void readMsg(MessageCenter msgcenter, InputStream is, String type) {
- BufferedReader reader = new BufferedReader(new InputStreamReader(is));
-
- try {
- String message = reader.readLine();
-
- if (type.equals("ERROR") && message != null)
- msgcenter.warn("Running Script:", new Exception(message));
-
- if (type.equals("INPUT"))
- msgcenter.info("Start running script.", (message != null ? message : ""));
- } catch (Exception e) {
- msgcenter.warn("Error reading message:", e);
- } finally {
- try {
- reader.close();
- } catch (Exception e) {
- msgcenter.warn("Error closing reading message:", e);
- }
- }
-
- }
-
- @Override
- public void projectLoaded() {
- fields = (VisualizationFields) app.getProject().getPage(fields.getName());
- if ( fields != null ){
- mcipFile.setText(fields.getMcipDataDir());
- beldFile.setText(fields.getBeldDataDir());
- epicFile.setText(fields.getEpicDataDir());
- mcipButton.setSelected(fields.isMcipDataSelected());
- beldButton.setSelected(fields.isBeldDataSelected());
- epicButton.setSelected(fields.isEpicDataSelected());
- } else{
- newProjectCreated();
- }
- }
-
- @Override
- public void saveProjectRequested() {
- if (mcipFile != null) fields.setMcipDataDir(mcipFile.getText());
- if (beldFile != null) fields.setBeldDataDir(beldFile.getText());
- if (epicFile != null) fields.setEpicDataDir(epicFile.getText());
- if (mcipButton != null) fields.setMcipDataSelected(mcipButton.isSelected());
- if (beldButton != null) fields.setBeldDataSelected(beldButton.isSelected());
- if (epicButton != null) fields.setEpicDataSelected(epicButton.isSelected());
- }
-
- @Override
- public void newProjectCreated() {
- fields.setMcipDataDir("");
- fields.setBeldDataDir("");
- fields.setEpicDataDir("");
- if (fields == null){
- fields = new VisualizationFields();
- app.getProject().addPage(fields);
- }
- }
-
-}
+package gov.epa.festc.gui;
+
+import gov.epa.festc.core.FestcApplication;
+import gov.epa.festc.core.proj.SiteFilesFields;
+import gov.epa.festc.core.proj.VisualizationFields;
+import gov.epa.festc.util.Constants;
+import gov.epa.festc.util.SpringLayoutGenerator;
+
+import java.awt.BorderLayout;
+import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.BorderFactory;
+import javax.swing.ButtonGroup;
+import javax.swing.JButton;
+import javax.swing.JFileChooser;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JRadioButton;
+import javax.swing.JTextField;
+import javax.swing.SpringLayout;
+import javax.swing.SwingConstants;
+
+import simphony.util.messages.MessageCenter;
+
+public class VisualizationPanel extends JPanel implements PlotEventListener {
+ private static final long serialVersionUID = 7114847591403108679L;
+ private JTextField mcipFile;
+ private JButton mcipFileBrowser;
+ private JTextField beldFile;
+ private JButton beldFileBrowser;
+ private JTextField epicFile;
+ private JButton epicFileBrowser;
+ private JRadioButton mcipButton;
+ private JRadioButton beldButton;
+ private JRadioButton epicButton;
+ private MessageCenter msg;
+ private FestcApplication app;
+ private VisualizationFields fields;
+
+ public VisualizationPanel(FestcApplication application) {
+ app = application;
+ msg = app.getMessageCenter();
+ fields = new VisualizationFields();
+ app.getProject().addPage(fields);
+ app.addPlotListener(this);
+ add(createPanel());
+ }
+
+ private JPanel createPanel() {
+ JPanel main = new JPanel(new BorderLayout());
+ main.add(getNorthPanel(), BorderLayout.NORTH);
+ main.add(getCenterPanel(), BorderLayout.CENTER);
+ main.add(getSouthPanel(), BorderLayout.SOUTH);
+ return main;
+ }
+
+ private JPanel getNorthPanel() {
+ JPanel panel = new JPanel();
+ JLabel title = new JLabel(Constants.VISU, SwingConstants.CENTER);
+ title.setFont(new Font("Default", Font.BOLD, 20));
+
+ panel.add(title);
+ panel.setBorder(BorderFactory.createEmptyBorder(10, 0, 60, 0));
+
+ return panel;
+ }
+
+ private JPanel getSouthPanel() {
+ JPanel panel = new JPanel();
+ JButton display = new JButton(displayAction());
+ panel.add(display);
+
+ panel.setBorder(BorderFactory.createEmptyBorder(60, 0, 10, 0));
+
+ return panel;
+ }
+
+ private JPanel getCenterPanel() {
+ JPanel panel = new JPanel(new SpringLayout());
+ SpringLayoutGenerator layout = new SpringLayoutGenerator();
+
+ mcipButton = new JRadioButton("MCIP Data:");
+ beldButton = new JRadioButton("Model Grid BELD Data:");
+ epicButton = new JRadioButton("EPIC Output Data:");
+ ButtonGroup group = new ButtonGroup();
+ epicButton.setSelected(true);
+ group.add(mcipButton);
+ group.add(beldButton);
+ group.add(epicButton);
+
+ JPanel mcip = new JPanel();
+ mcipFile = new JTextField(40);
+ mcipFileBrowser = new JButton(browseAction("MCIP data file", mcipFile));
+ mcip.add(mcipFile);
+ mcip.add(mcipFileBrowser);
+
+ JPanel beld = new JPanel();
+ beldFile = new JTextField(40);
+ beld.add(beldFile);
+ beldFileBrowser = new JButton(browseAction("BELD data file", beldFile));
+ beld.add(beldFileBrowser);
+
+ JPanel epic = new JPanel();
+ epicFile = new JTextField(40);
+ epicFileBrowser = new JButton(browseAction("EPIC data file", epicFile));
+ epic.add(epicFile);
+ epic.add(epicFileBrowser);
+
+// String[] vars = new String[] { "Select a variable...",
+// "CANOPY(Percent)", "IMPERV(Percent)", "LANDMASK(None)",
+// "LU_INDEX(Category)", "XLAT_M(degrees latitude)",
+// "XLONG_M(degrees longitude" };
+// JComboBox varBox = new JComboBox(vars);
+// epic.add(varBox);
+
+ layout.addWidgetPair(mcipButton, mcip, panel);
+ layout.addWidgetPair(beldButton, beld, panel);
+ layout.addWidgetPair(epicButton, epic, panel);
+
+ layout.makeCompactGrid(panel, 3, 2, // number of rows and cols
+ 10, 10, // initial X and Y
+ 5, 5); // x and y pading
+
+ return panel;
+ }
+
+ private Action displayAction() {
+ return new AbstractAction("Display") {
+ private static final long serialVersionUID = 8505323087261015010L;
+
+ public void actionPerformed(ActionEvent e) {
+ String temp = epicFile.getText();
+
+ if (beldButton.isSelected())
+ temp = beldFile.getText();
+
+ if (mcipButton.isSelected())
+ temp = mcipFile.getText();
+
+ if (temp == null || temp.trim().isEmpty())
+ return;
+
+ temp = temp.trim();
+
+ File file = new File(temp);
+
+ if (!file.isFile() || !file.exists())
+ return;
+
+ final String filePath = temp;
+
+ Thread populateThread = new Thread(new Runnable() {
+ public void run() {
+ callVerdi(filePath);
+ }
+ });
+ populateThread.start();
+ }
+ };
+ }
+
+ private Action browseAction(final String name, final JTextField text) {
+ return new AbstractAction("Browse...") {
+ private static final long serialVersionUID = 0L;
+
+ public void actionPerformed(ActionEvent e) {
+ JFileChooser chooser;
+ File file = new File(text.getText());
+
+ if (file != null && file.exists())
+ chooser = new JFileChooser(file);
+ else
+ chooser = new JFileChooser(app.getCurrentDir());
+
+ chooser.setDialogTitle("Please select the " + name);
+
+ int option = chooser.showDialog(VisualizationPanel.this,
+ "Select");
+ if (option == JFileChooser.APPROVE_OPTION) {
+ File selected = chooser.getSelectedFile();
+ text.setText("" + selected);
+ app.setCurrentDir(selected.getParentFile());
+ }
+ }
+ };
+ }
+
+ private void callVerdi(final String file) {
+ String visProgHome = Constants.getProperty(Constants.VISUAL_PROGRAM_HOME, msg);
+ String visProg = Constants.getProperty(Constants.VISUAL_PROGRAM, msg);
+ File ncfile = new File(file.replaceAll("\\\\", "\\\\\\\\"));
+ ProcessBuilder pb = null;
+ String cmd = visProgHome.replaceAll("\\\\", "\\\\\\\\");
+
+ String osName = System.getProperty("os.name");
+ if (osName.equals("Linux") || osName.trim().equalsIgnoreCase("Mac OS X")) {
+ cmd += "/" + visProg + " " + ncfile;
+ System.out.println("Command: " + cmd);
+ pb = new ProcessBuilder("csh", "-c", cmd);
+ }
+
+ // set up the working directory.
+ pb.directory(ncfile.getParentFile());
+
+ // merge child's error and normal output streams.
+ pb.redirectErrorStream(true);
+
+ Process p = null;
+
+ try {
+ p = pb.start();
+ final InputStream es = p.getErrorStream();
+ final InputStream is = p.getInputStream();
+
+ // spawn two threads to handle I/O with child while we wait for it
+ // to complete.
+ Thread esthread = new Thread(new Runnable() {
+ public void run() {
+ readMsg(msg, es, "ERROR");
+ }
+ });
+ esthread.start();
+
+ Thread isthread = new Thread(new Runnable() {
+ public void run() {
+ readMsg(msg, is, "INPUT");
+ }
+ });
+ isthread.start();
+
+
+ if (Constants.DEBUG) {
+ System.out.println("Verdi starting Process started: " + p.toString());
+ msg.info("Verdi starting Process started: " + p.toString());
+ }
+
+ p.waitFor();
+ es.close();
+ is.close();
+
+ if (Constants.DEBUG) {
+ System.out.println("Verdi starting Process finished.");
+ msg.info("Verdi starting Process finished.");
+ }
+ } catch (IOException e) {
+ System.out.println("Error happened: " + e.getMessage());
+ e.printStackTrace();
+ }
+ catch (InterruptedException e) {
+ Thread.currentThread().interrupt();
+ System.out.println("Interrupted: " + e.getMessage());
+ e.printStackTrace();
+ }
+ catch (Exception e) {
+ System.out.println("Error happened: " + e.getMessage());
+ e.printStackTrace();
+ }
+ finally {
+ if (p != null) {
+ try {
+ p.getErrorStream().close();
+ p.getInputStream().close();
+ } catch (IOException e) {
+ //
+ }
+ }
+ }
+ }
+
+ private void readMsg(MessageCenter msgcenter, InputStream is, String type) {
+ BufferedReader reader = new BufferedReader(new InputStreamReader(is));
+
+ try {
+ String message = reader.readLine();
+
+ if (type.equals("ERROR") && message != null)
+ msgcenter.warn("Running Script:", new Exception(message));
+
+ if (type.equals("INPUT"))
+ msgcenter.info("Start running script.", (message != null ? message : ""));
+ } catch (Exception e) {
+ msgcenter.warn("Error reading message:", e);
+ } finally {
+ try {
+ reader.close();
+ } catch (Exception e) {
+ msgcenter.warn("Error closing reading message:", e);
+ }
+ }
+
+ }
+
+ @Override
+ public void projectLoaded() {
+ fields = (VisualizationFields) app.getProject().getPage(fields.getName());
+ if ( fields != null ){
+ mcipFile.setText(fields.getMcipDataDir());
+ beldFile.setText(fields.getBeldDataDir());
+ epicFile.setText(fields.getEpicDataDir());
+ mcipButton.setSelected(fields.isMcipDataSelected());
+ beldButton.setSelected(fields.isBeldDataSelected());
+ epicButton.setSelected(fields.isEpicDataSelected());
+ } else{
+ newProjectCreated();
+ }
+ }
+
+ @Override
+ public void saveProjectRequested() {
+ if (mcipFile != null) fields.setMcipDataDir(mcipFile.getText());
+ if (beldFile != null) fields.setBeldDataDir(beldFile.getText());
+ if (epicFile != null) fields.setEpicDataDir(epicFile.getText());
+ if (mcipButton != null) fields.setMcipDataSelected(mcipButton.isSelected());
+ if (beldButton != null) fields.setBeldDataSelected(beldButton.isSelected());
+ if (epicButton != null) fields.setEpicDataSelected(epicButton.isSelected());
+ }
+
+ @Override
+ public void newProjectCreated() {
+ fields.setMcipDataDir("");
+ fields.setBeldDataDir("");
+ fields.setEpicDataDir("");
+ if (fields == null){
+ fields = new VisualizationFields();
+ app.getProject().addPage(fields);
+ }
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/util/Constants.java b/festc_core/src/gov/epa/festc/util/Constants.java
index 2508c8e..ed3f182 100644
--- a/festc_core/src/gov/epa/festc/util/Constants.java
+++ b/festc_core/src/gov/epa/festc/util/Constants.java
@@ -1,159 +1,178 @@
-package gov.epa.festc.util;
-
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.IOException;
-import java.util.Date;
-import java.util.HashMap;
-
-import simphony.util.messages.MessageCenter;
-
-public class Constants {
- public static final String LABEL_EPIC_SCENARIO = "Scenario Directory:";
- public static final String PROPERTY_COMMENT_CHAR = "#";
- public static final String CONFIG_HOME = "config.home";
- public static final String PROJECT_HOME = "project.home";
- public static final String VERDI_HOME = "verdi.home";
- public static final String VISUAL_PROGRAM_HOME = "visual.program.home";
- public static final String VISUAL_PROGRAM = "visual.program";
- public static final String SA_HOME = "sa.home";
- public static final String SA_SETUP_FILE = "/bin/sa_setup.csh";
- public static final String EPIC_HOME = "epic.home";
- public static final String QUEUE_NAME = "queue.name";
- public static final String QUEUE_BMEM = "queue.bigmem";
- //public static final String QUEUE_PRELOG = "queue.prelog";
- public static final String QUEUE_OPT = "queue.option";
- public static final String QUEUE_CMD = "queue.cmd";
- public static final String WORK_DIR = "work.dir";
- public static final String USER_HOME = "user.home";
- public static final String LINE_SEPARATOR = "line.separator";
- public static final String NEW_SCENARIO = "Create";
- public static final String COPY_SCENARIO = "Copy";
- public static final String SAVE_SCENARIO = "Save";
- public static final String DELETE_SCENARIO = "delete";
- public static final String ALLOW_DIFF_CHECK = "allow.diff.check";
- public static final String PROPERTY_FILE = "/festc/config.properties";
- public static final String[] PROJECTIONS = new String[] {"Stand Lambert", "Other"};
- public static final String[] DEPSELECTIONS = new String[] {"CMAQ deposition directory", "Default", "Zero"};
-
- // EPIC Action Names
- public static final String BELD4_GEN = "BELD4 Data Generation";
- public static final String SITE_INFO = "Crop Site Info Generation";
- public static final String MC2EPIC = "WRF/CMAQ to EPIC";
- public static final String EPIC_SITE = "EPIC Site File Generation";
- public static final String SOIL_MATCH = "Soil Match for EPIC Spinup";
- public static final String MAN_SPINUP = "Management File Generation for Spinup";
- public static final String EDIT_INFILES = "View/Edit EPIC Inputs";
- public static final String[] FERTYEARS = new String[] {"2001", "2006"};
- public static final String[] NLCDYEARS = new String[] {"2001", "2006", "2011"};
- public static final String[] NDEPS = new String[] {"CMAQ", "EPIC parameter input file",
- "2002-2006 5-year CMAQ average",
- "2006-2010 5-year CMAQ average"};
- public static final String[] SU_NDEPS = new String[] {"EPIC parameter input file",
- "2002-2006 5-year CMAQ average",
- "2006-2010 5-year CMAQ average"};
- public static final String[] SWAT_NDEPS = new String[] {"CMAQ",
- "2002-2006 5-year CMAQ average",
- "2006-2010 5-year CMAQ average"}; //dir:dailyNDep_2004, dailyNDep_2008
- public static final String[] AREAS = new String[] {"Domain","State","County","HUC8","HUC6","HUC2"};
- public static final String EPIC_SPINUP = "EPIC Runs for Spinup";
- public static final String MAN_APP = "Management File Generation for Application";
- public static final String EPIC_APP = "EPIC Runs for Application";
- public static final String EPIC_YEAR = "EPIC Yearly Extraction";
- public static final String EPIC2CMAQ = "EPIC to CMAQ";
- public static final String EPIC2SWAT = "EPIC to SWAT";
- public static final String VISU = "Visualization";
-
- // Crop list
- public static final HashMap CROPS = new HashMap(){
- private static final long serialVersionUID = -7600822219153629808L;
- {
- put("HAY", 1);
- put("ALFALFA", 3);
- put("OTHGRASS", 5);
- put("BARLEY", 7);
- put("EBEANS", 9);
- put("CORNG", 11);
- put("CORNS", 13);
- put("COTTON", 15);
- put("OATS", 17);
- put("PEANUTS", 19);
- put("POTATOES", 21);
- put("RICE", 23);
- put("RYE", 25);
- put("SORGHUMG", 27);
- put("SORGHUMS", 29);
- put("SOYBEANS", 31);
- put("SWHEAT", 33);
- put("WWHEAT", 35);
- put("OTHER", 37);
- put("CANOLA", 39);
- put("BEANS", 41);
- }
- };
-
- public static final String[] CATEGORIES = new String[]{
- "SIT",
- "SOL",
- "OPC",
- "OPS"
- };
-
- public static final String BOX_SIZE = "This is used to calculate combobox sizes.";
-
- public static boolean DEBUG=true;
-
- private static boolean propertiesLoaded = false;
-
-
- private static void loadPropertyFile(MessageCenter msg) {
-
- File file = new File(System.getProperty(USER_HOME) + PROPERTY_FILE);
- try {
- if (!file.exists()) {
- msg.warn("Error loading config properties", new Exception("File " + file + " doesn't exist."));
- System.out.println("File " + file + " doesn't exist.");
- System.exit(1);
- }
-
- if (file.exists()) {
- System.getProperties().load(new FileInputStream(file));
- propertiesLoaded = true;
- System.out.println("Config file " + file + " loaded at: " + new Date());
- }
-
- if ( System.getProperty("debug") == null) {
- DEBUG = false;
- } else {
- DEBUG = "TRUE".equalsIgnoreCase(System.getProperty("debug").trim()); // init the debug according to config file
- }
-
- test();
-
- } catch (IOException e) {
- msg.warn("Error loading config properties", e);
- }
- }
-
- public static String getProperty(String key, MessageCenter msg) {
- if (!propertiesLoaded)
- loadPropertyFile(msg);
-
- String prop = System.getProperty(key);
- if ( prop != null) {
- if (prop.contains(PROPERTY_COMMENT_CHAR)) {
- prop = prop.substring(0, prop.indexOf(PROPERTY_COMMENT_CHAR));
- }
- prop = prop.trim();
- }
- return prop;
- }
-
- private static void test() {
- MessageCenter msg = MessageCenter.getMessageCenter(Constants.class);
- System.out.println(getProperty("visual.program.home", msg));
- System.out.println(getProperty("visual.program", msg));
-
- }
-
-}
+package gov.epa.festc.util;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.IOException;
+import java.util.Date;
+import java.util.HashMap;
+
+import simphony.util.messages.MessageCenter;
+
+public class Constants {
+ public static final String LABEL_EPIC_SCENARIO = "Scenario Directory:";
+ public static final String PROPERTY_COMMENT_CHAR = "#";
+ public static final String CONFIG_HOME = "config.home";
+ public static final String PROJECT_HOME = "project.home";
+ public static final String VERDI_HOME = "verdi.home";
+ public static final String VISUAL_PROGRAM_HOME = "visual.program.home";
+ public static final String VISUAL_PROGRAM = "visual.program";
+ public static final String SA_HOME = "sa.home";
+ public static final String SA_SETUP_FILE = "/bin/sa_setup.csh";
+ public static final String EPIC_HOME = "epic.home";
+ public static final String QUEUE_NAME = "queue.name";
+// public static final String QUEUE_BMEM = "queue.bigmem";
+ //public static final String QUEUE_PRELOG = "queue.prelog";
+ public static final String QUEUE_OPT = "queue.option";
+ public static final String QUEUE_CMD = "queue.cmd";
+ public static final String QUEUE_R_MODULE = "queue.Rmodules";
+ public static final String QUEUE_SINGULARITY_MODULE = "queue.singularitymodule";
+ public static final String QUEUE_SINGULARITY_IMAGE = "queue.singularityimage";
+ public static final String QUEUE_SINGULARITY_BIND = "queue.singularitybind";
+
+ public static final String QUEUE_BELD4_CMD = "queue.beld4";
+ public static final String QUEUE_SITE_INFO = "queue.siteinfo";
+ public static final String QUEUE_MC2EPIC = "queue.mc2epic";
+ public static final String QUEUE_EPIC_SITE = "queue.epicsite";
+ public static final String QUEUE_SOIL_MATCH = "queue.soilmatch";
+ public static final String QUEUE_MAN_SPINUP = "queue.manspinup";
+ public static final String QUEUE_EPIC_SPINUP = "queue.epicspinup";
+ public static final String QUEUE_MAN_APP = "queue.manapp";
+ public static final String QUEUE_EPIC_APP = "queue.epicapp";
+ public static final String QUEUE_YEARLY_EXT = "queue.yearlyext";
+ public static final String QUEUE_EPIC2CMAQ = "queue.epic2cmaq";
+ public static final String QUEUE_EPIC2SWAT = "queue.epic2swat";
+
+ public static final String WORK_DIR = "work.dir";
+ public static final String EPIC_VER = "epic.ver";
+ public static final String USER_HOME = "user.home";
+ public static final String LINE_SEPARATOR = "line.separator";
+ public static final String NEW_SCENARIO = "Create";
+ public static final String COPY_SCENARIO = "Copy";
+ public static final String SAVE_SCENARIO = "Save";
+ public static final String DELETE_SCENARIO = "delete";
+ public static final String ALLOW_DIFF_CHECK = "allow.diff.check";
+ public static final String PROPERTY_FILE = "/festc/config.properties";
+ public static final String[] PROJECTIONS = new String[] {"Stand Lambert", "Other"};
+ public static final String[] DEPSELECTIONS = new String[] {"CMAQ deposition directory", "Default", "Zero"};
+
+ // EPIC Action Names
+ public static final String BELD4_GEN = "BELD4 Data Generation";
+ public static final String SITE_INFO = "Crop Site Info Generation";
+ public static final String MC2EPIC = "WRF/CMAQ to EPIC";
+ public static final String EPIC_SITE = "EPIC Site File Generation";
+ public static final String SOIL_MATCH = "Soil Match for EPIC Spinup";
+ public static final String MAN_SPINUP = "Management File Generation for Spinup";
+ public static final String EDIT_INFILES = "View/Edit EPIC Inputs";
+ public static final String[] FERTYEARS = new String[] {"2001", "2006", "2011", "2016"};
+ public static final String[] NLCDYEARS = new String[] {"2001", "2006", "2011"};
+ public static final String[] NDEPS = new String[] {"CMAQ", "EPIC parameter input file",
+ "2002-2006 5-year CMAQ average",
+ "2006-2010 5-year CMAQ average"};
+ public static final String[] SU_NDEPS = new String[] {"EPIC parameter input file",
+ "2002-2006 5-year CMAQ average",
+ "2006-2010 5-year CMAQ average"};
+ public static final String[] SWAT_NDEPS = new String[] {"CMAQ",
+ "2002-2006 5-year CMAQ average",
+ "2006-2010 5-year CMAQ average"}; //dir:dailyNDep_2004, dailyNDep_2008
+ public static final String[] AREAS = new String[] {"Domain","State","County","HUC8","HUC6","HUC2"};
+ public static final String EPIC_SPINUP = "EPIC Runs for Spinup";
+ public static final String MAN_APP = "Management File Generation for Application";
+ public static final String EPIC_APP = "EPIC Runs for Application";
+ public static final String EPIC_YEAR = "EPIC Yearly Extraction";
+ public static final String EPIC2CMAQ = "EPIC to CMAQ";
+ public static final String EPIC2SWAT = "EPIC to SWAT";
+ public static final String VISU = "Visualization";
+
+ // Crop list
+ public static final HashMap CROPS = new HashMap(){
+ private static final long serialVersionUID = -7600822219153629808L;
+ {
+ put("HAY", 1);
+ put("ALFALFA", 3);
+ put("OTHGRASS", 5);
+ put("BARLEY", 7);
+ put("EBEANS", 9);
+ put("CORNG", 11);
+ put("CORNS", 13);
+ put("COTTON", 15);
+ put("OATS", 17);
+ put("PEANUTS", 19);
+ put("POTATOES", 21);
+ put("RICE", 23);
+ put("RYE", 25);
+ put("SORGHUMG", 27);
+ put("SORGHUMS", 29);
+ put("SOYBEANS", 31);
+ put("SWHEAT", 33);
+ put("WWHEAT", 35);
+ put("OTHER", 37);
+ put("CANOLA", 39);
+ put("BEANS", 41);
+ }
+ };
+
+ public static final String[] CATEGORIES = new String[]{
+ "SIT",
+ "SOL",
+ "OPC",
+ "OPS"
+ };
+
+ public static final String BOX_SIZE = "This is used to calculate combobox sizes.";
+
+ public static boolean DEBUG=true;
+
+ private static boolean propertiesLoaded = false;
+
+
+ private static void loadPropertyFile(MessageCenter msg) {
+
+ File file = new File(System.getProperty(USER_HOME) + PROPERTY_FILE);
+ try {
+ if (!file.exists()) {
+ msg.warn("Error loading config properties", new Exception("File " + file + " doesn't exist."));
+ System.out.println("File " + file + " doesn't exist.");
+ System.exit(1);
+ }
+
+ if (file.exists()) {
+ System.getProperties().load(new FileInputStream(file));
+ propertiesLoaded = true;
+ System.out.println("Config file " + file + " loaded at: " + new Date());
+ }
+
+ if ( System.getProperty("debug") == null) {
+ DEBUG = false;
+ } else {
+ DEBUG = "TRUE".equalsIgnoreCase(System.getProperty("debug").trim()); // init the debug according to config file
+ }
+
+ test();
+
+ } catch (IOException e) {
+ msg.warn("Error loading config properties", e);
+ }
+ }
+
+ public static String getProperty(String key, MessageCenter msg) {
+ if (!propertiesLoaded)
+ loadPropertyFile(msg);
+
+ String prop = System.getProperty(key);
+ if ( prop != null) {
+ if (prop.contains(PROPERTY_COMMENT_CHAR)) {
+ prop = prop.substring(0, prop.indexOf(PROPERTY_COMMENT_CHAR));
+ }
+ prop = prop.trim();
+ }
+ return prop;
+ }
+
+ private static void test() {
+ MessageCenter msg = MessageCenter.getMessageCenter(Constants.class);
+ System.out.println(getProperty("visual.program.home", msg));
+ System.out.println(getProperty("visual.program", msg));
+
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/util/DateFormat.java b/festc_core/src/gov/epa/festc/util/DateFormat.java
index bd8955b..3253b30 100644
--- a/festc_core/src/gov/epa/festc/util/DateFormat.java
+++ b/festc_core/src/gov/epa/festc/util/DateFormat.java
@@ -1,124 +1,124 @@
-package gov.epa.festc.util;
-
-import java.text.ParseException;
-import java.text.SimpleDateFormat;
-import java.util.Date;
-
-public class DateFormat {
-
- public static final String PATTERN_yyyyMMddHHmm = "yyyy/MM/dd HH:mm";
-
- public static final String PATTERN_MMddYYYY_HHmm = "MM/dd/yyyy HH:mm";
-
- private static SimpleDateFormat dateFormatter = new SimpleDateFormat();
-
-
- public static String format_YYYY_MM_DD_HH_MM(Date date) {
- dateFormatter.applyPattern(PATTERN_yyyyMMddHHmm);
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_YYYYMMDDHHMM(Date date) {
- dateFormatter.applyPattern("yyyyMMddHHmm");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_MM_DD_YYYY(Date date) {
- dateFormatter.applyPattern("MM/dd/yyyy");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_MM_DD_YYYY_HH_mm(Date date) {
- dateFormatter.applyPattern(PATTERN_MMddYYYY_HHmm);
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static Date parse_MM_DD_YYYY_HH_mm(String date) throws ParseException {
- dateFormatter.applyPattern(PATTERN_MMddYYYY_HHmm);
- return date == null || date.trim().isEmpty() ? null : dateFormatter.parse(date);
- }
-
- public static String format_YYYY(Date date) {
- dateFormatter.applyPattern("yyyy");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static Date parse_YYYY(String date) throws ParseException {
- dateFormatter.applyPattern("yyyy");
- return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
- }
-
- public static Date parse_MMddyyyy(String date) throws ParseException {
- dateFormatter.applyPattern("MM/dd/yyyy");
- return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
- }
-
- public static String format_ddMMMyyyy(Date date) {
- dateFormatter.applyPattern("ddMMMyyyy");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_MM_DD_YYYY_HH_mm_ss(Date date) {
- dateFormatter.applyPattern("MM/dd/yyyy HH:mm:ss");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_MMDDYYYYHHmmss(Date date) {
- dateFormatter.applyPattern("MM-dd-yyyy-HHmmss");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static Date parse_YYYY_MM_DD_HH_MM(String date) throws ParseException {
- dateFormatter.applyPattern("yyyy/MM/dd HH:mm");
- return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
- }
-
- public static String format_YYYY_MM_DD_HH_MM_ss_SS(Date date) {
- dateFormatter.applyPattern("yyyy/MM/dd HH:mm:ss:SS");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_yyyy_MM_dd_HHmmssSS(Date date) {
- dateFormatter.applyPattern("yyyy-MM-dd-HH:mm:ss:SS");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static Date format_yyyy_MM_dd_HHmmssSS(String date) throws ParseException {
- dateFormatter.applyPattern("yyyy-MM-dd-HH:mm:ss:SS");
- return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
-// return date == null ? "" : dateFormatter.format(date);
- }
-
- public static Date format_yyyy_MM_dd_HHmmss(String date) throws ParseException {
- dateFormatter.applyPattern("yyyy-MM-dd HH:mm:ss");
- return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
-// return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_YYYYMMDDHHMMSS(Date date) {
- dateFormatter.applyPattern("yyyyMMddHHmmss");
- return date == null ? "" : dateFormatter.format(date);
- }
-
-
- public static String format_YYYYMMDDHHMMSSSS(Date date) {
- dateFormatter.applyPattern("yyyyMMddHHmmssSS");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_YYDDHHMMSS(Date date) {
- dateFormatter.applyPattern("yyddHHmmss");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_HHMM(Date date) {
- dateFormatter.applyPattern("HHmm");
- return date == null ? "" : dateFormatter.format(date);
- }
-
- public static String format_HHMMSSSS(Date date) {
- dateFormatter.applyPattern("HHmmssSS");
- return date == null ? "" : dateFormatter.format(date);
- }
-
-}
+package gov.epa.festc.util;
+
+import java.text.ParseException;
+import java.text.SimpleDateFormat;
+import java.util.Date;
+
+public class DateFormat {
+
+ public static final String PATTERN_yyyyMMddHHmm = "yyyy/MM/dd HH:mm";
+
+ public static final String PATTERN_MMddYYYY_HHmm = "MM/dd/yyyy HH:mm";
+
+ private static SimpleDateFormat dateFormatter = new SimpleDateFormat();
+
+
+ public static String format_YYYY_MM_DD_HH_MM(Date date) {
+ dateFormatter.applyPattern(PATTERN_yyyyMMddHHmm);
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_YYYYMMDDHHMM(Date date) {
+ dateFormatter.applyPattern("yyyyMMddHHmm");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_MM_DD_YYYY(Date date) {
+ dateFormatter.applyPattern("MM/dd/yyyy");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_MM_DD_YYYY_HH_mm(Date date) {
+ dateFormatter.applyPattern(PATTERN_MMddYYYY_HHmm);
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static Date parse_MM_DD_YYYY_HH_mm(String date) throws ParseException {
+ dateFormatter.applyPattern(PATTERN_MMddYYYY_HHmm);
+ return date == null || date.trim().isEmpty() ? null : dateFormatter.parse(date);
+ }
+
+ public static String format_YYYY(Date date) {
+ dateFormatter.applyPattern("yyyy");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static Date parse_YYYY(String date) throws ParseException {
+ dateFormatter.applyPattern("yyyy");
+ return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
+ }
+
+ public static Date parse_MMddyyyy(String date) throws ParseException {
+ dateFormatter.applyPattern("MM/dd/yyyy");
+ return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
+ }
+
+ public static String format_ddMMMyyyy(Date date) {
+ dateFormatter.applyPattern("ddMMMyyyy");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_MM_DD_YYYY_HH_mm_ss(Date date) {
+ dateFormatter.applyPattern("MM/dd/yyyy HH:mm:ss");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_MMDDYYYYHHmmss(Date date) {
+ dateFormatter.applyPattern("MM-dd-yyyy-HHmmss");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static Date parse_YYYY_MM_DD_HH_MM(String date) throws ParseException {
+ dateFormatter.applyPattern("yyyy/MM/dd HH:mm");
+ return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
+ }
+
+ public static String format_YYYY_MM_DD_HH_MM_ss_SS(Date date) {
+ dateFormatter.applyPattern("yyyy/MM/dd HH:mm:ss:SS");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_yyyy_MM_dd_HHmmssSS(Date date) {
+ dateFormatter.applyPattern("yyyy-MM-dd-HH:mm:ss:SS");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static Date format_yyyy_MM_dd_HHmmssSS(String date) throws ParseException {
+ dateFormatter.applyPattern("yyyy-MM-dd-HH:mm:ss:SS");
+ return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
+// return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static Date format_yyyy_MM_dd_HHmmss(String date) throws ParseException {
+ dateFormatter.applyPattern("yyyy-MM-dd HH:mm:ss");
+ return date == null || date.trim().isEmpty()? null : dateFormatter.parse(date);
+// return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_YYYYMMDDHHMMSS(Date date) {
+ dateFormatter.applyPattern("yyyyMMddHHmmss");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+
+ public static String format_YYYYMMDDHHMMSSSS(Date date) {
+ dateFormatter.applyPattern("yyyyMMddHHmmssSS");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_YYDDHHMMSS(Date date) {
+ dateFormatter.applyPattern("yyddHHmmss");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_HHMM(Date date) {
+ dateFormatter.applyPattern("HHmm");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+ public static String format_HHMMSSSS(Date date) {
+ dateFormatter.applyPattern("HHmmssSS");
+ return date == null ? "" : dateFormatter.format(date);
+ }
+
+}
diff --git a/festc_core/src/gov/epa/festc/util/FileRunner.java b/festc_core/src/gov/epa/festc/util/FileRunner.java
index f2c6180..fa365b4 100644
--- a/festc_core/src/gov/epa/festc/util/FileRunner.java
+++ b/festc_core/src/gov/epa/festc/util/FileRunner.java
@@ -15,10 +15,60 @@ public static void runScript(final String file, final String logText, final Mess
String qcmd = Constants.getProperty(Constants.QUEUE_CMD, msg);
String qopt = Constants.getProperty(Constants.QUEUE_OPT, msg);
//String qname = Constants.getProperty(Constants.QUEUE_NAME, msg);
- String qbigmem = Constants.getProperty(Constants.QUEUE_BMEM, msg);
+// String qbigmem = Constants.getProperty(Constants.QUEUE_BMEM, msg);
String workdir = Constants.getProperty(Constants.WORK_DIR, msg);
- boolean useBigMem = false;
- if (file.contains("epic2CMAQ_") || file.contains("epic2swat_")) useBigMem = true;
+
+ String qbeld4 = Constants.getProperty(Constants.QUEUE_BELD4_CMD, msg);
+ String qSiteInfo = Constants.getProperty(Constants.QUEUE_SITE_INFO, msg);
+ String qMc2Epic = Constants.getProperty(Constants.QUEUE_MC2EPIC, msg);
+ String qEpicSite = Constants.getProperty(Constants.QUEUE_EPIC_SITE, msg);
+ String qSoilMatch = Constants.getProperty(Constants.QUEUE_SOIL_MATCH, msg);
+ String qManSpinup = Constants.getProperty(Constants.QUEUE_MAN_SPINUP, msg);
+ String qEpicSpinup = Constants.getProperty(Constants.QUEUE_EPIC_SPINUP, msg);
+ String qManApp = Constants.getProperty(Constants.QUEUE_MAN_APP, msg);
+ String qEpicApp = Constants.getProperty(Constants.QUEUE_EPIC_APP, msg);
+ String qYearlyExt = Constants.getProperty(Constants.QUEUE_YEARLY_EXT, msg);
+ String qEpic2Cmaq = Constants.getProperty(Constants.QUEUE_EPIC2CMAQ, msg);
+ String qEpic2Swat = Constants.getProperty(Constants.QUEUE_EPIC2SWAT, msg);
+ String qOption = "";
+
+// boolean useBigMem = false;
+// if (file.contains("epic2CMAQ_") || file.contains("epic2swat_")) useBigMem = true;
+
+ //choose option based on script file name
+ if (file.contains("generateBeld4Data")){
+ qOption = qbeld4;
+ } else if (file.contains("generateSiteInfo")){
+ qOption = qSiteInfo;
+ } else if (file.contains("generateEPICsiteDailyWeather")){
+ qOption = qMc2Epic;
+ } else if (file.contains("generateEpicSiteFile")){
+ qOption = qEpicSite;
+ } else if (file.contains("runEpicSoilMatch")){
+ qOption = qSoilMatch;
+ } else if (file.contains("runEpicManSpinup")){
+ qOption = qManSpinup;
+ } else if (file.contains("runEpicSpinup")){
+ qOption = qEpicSpinup;
+ } else if (file.contains("runEPICManApp")){
+ qOption = qManApp;
+ } else if (file.contains("runEpicApp")){
+ qOption = qEpicApp;
+ } else if (file.contains("epicYearlyAverage")){
+ qOption = qYearlyExt;
+ } else if (file.contains("epic2CMAQ")){
+ qOption = qEpic2Cmaq;
+ } else if (file.contains("epic2SWAT")){
+ qOption = qEpic2Swat;
+ }
+
+ // ensure qOption is not null (Constants.getProperty returns null if property is missing)
+ if (qOption == null){
+ qOption = "";
+ }
+ if (qopt == null){
+ qopt = "";
+ }
if (workdir == null || workdir.trim().isEmpty())
workdir = Constants.getProperty(Constants.USER_HOME, msg);
@@ -48,12 +98,15 @@ public static void runScript(final String file, final String logText, final Mess
// cmd = cmd + " " + qopt;
// }
- if (useBigMem)
- cmd = cmd + " " + qbigmem + " " + qopt + " " + log + " " + script.getAbsolutePath();
- else
- cmd = cmd + " " +qopt + " " + log + " " + script.getAbsolutePath();
+// if (useBigMem)
+// cmd = cmd + " " + qbigmem + " " + qopt + " " + log + " " + script.getAbsolutePath();
+// else
+// cmd = cmd + " " +qopt + " " + log + " " + script.getAbsolutePath();
+
+ cmd = cmd + " " + qOption + " " + qopt + " -o " + log + " " + script.getAbsolutePath();
- if ((qcmd == null || qcmd.trim().isEmpty()) || (qcmd == null || qcmd.trim().isEmpty()))
+ //Always use direct submission if spinup or app (for compatibility with job array submission)
+ if (qcmd == null || qcmd.trim().isEmpty())
cmd = "cd " + scriptDir+ "\n" + script.getAbsolutePath() + " > " + log + " & " ;
cmd = cmd + "\ncd - \n";
@@ -133,6 +186,87 @@ public void run() {
}
}
+
+ public static void runScriptwCmd(final String file, final String logText, final MessageCenter msg, final String cmd) {
+
+ File script = new File(file.replaceAll("\\\\", "\\\\\\\\"));
+
+ if (Constants.DEBUG) {
+ System.out.println("Command = " + cmd);
+ msg.info("Command = " + cmd);
+ }
+
+ ProcessBuilder pb = new ProcessBuilder("cmd", "/C", cmd);
+
+ String osName = System.getProperty("os.name" );
+
+ if(osName.equals("Linux"))
+ pb = new ProcessBuilder("csh", "-c", cmd);
+
+ // set up the working directory.
+ pb.directory(script.getParentFile());
+
+ // merge child's error and normal output streams.
+ pb.redirectErrorStream(true);
+
+ Process p = null;
+
+ if (Constants.DEBUG) {
+ System.out.println("Starting a new process to run the script file...");
+ msg.info("Starting a new process to run the script file...");
+ }
+
+ try {
+ p = pb.start();
+ final InputStream es = p.getErrorStream();
+ final InputStream is = p.getInputStream();
+
+ // spawn two threads to handle I/O with child while we wait for it
+ // to complete.
+ Thread esthread = new Thread(new Runnable() {
+ public void run() {
+ readMsg(msg, es, "ERROR");
+ }
+ });
+ esthread.start();
+
+ Thread isthread = new Thread(new Runnable() {
+ public void run() {
+ readMsg(msg, is, "INPUT");
+ }
+ });
+ isthread.start();
+
+
+ if (Constants.DEBUG) {
+ System.out.println("Process started: " + p.toString());
+ msg.info("Process started: " + p.toString());
+ }
+
+ p.waitFor();
+ es.close();
+ is.close();
+
+ if (Constants.DEBUG) {
+ System.out.println("Job submitted.");
+ msg.info("Job submitted.");
+ }
+
+ } catch (InterruptedException e) {
+ Thread.currentThread().interrupt();
+ } catch (IOException e) {
+ //
+ } finally {
+ if (p != null) {
+ try {
+ p.getErrorStream().close();
+ } catch (IOException e) {
+ //
+ }
+ }
+ }
+ }
+
private static void readMsg(MessageCenter msgcenter, InputStream is, String type) {
BufferedReader reader = new BufferedReader(new InputStreamReader(is));
diff --git a/festc_core/src/gov/epa/festc/util/FormattedTextFieldDemo.java b/festc_core/src/gov/epa/festc/util/FormattedTextFieldDemo.java
index bd55b4e..1a2a030 100644
--- a/festc_core/src/gov/epa/festc/util/FormattedTextFieldDemo.java
+++ b/festc_core/src/gov/epa/festc/util/FormattedTextFieldDemo.java
@@ -1,193 +1,193 @@
-package gov.epa.festc.util;
-
-import java.awt.BorderLayout;
-import java.awt.Color;
-import java.awt.GridLayout;
-import java.beans.PropertyChangeEvent;
-import java.beans.PropertyChangeListener;
-import java.text.NumberFormat;
-
-import javax.swing.BorderFactory;
-import javax.swing.JFormattedTextField;
-import javax.swing.JFrame;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.SwingUtilities;
-import javax.swing.UIManager;
-
-/**
- * FormattedTextFieldDemo.java requires no other files.
- *
- * It implements a mortgage calculator that uses four
- * JFormattedTextFields.
- */
-public class FormattedTextFieldDemo extends JPanel
- implements PropertyChangeListener {
- /**
- *
- */
- private static final long serialVersionUID = -4839273043247054365L;
- //Values for the fields
- private double amount = 100000;
- private double rate = 7.5; //7.5%
- private int numPeriods = 30;
-
- //Labels to identify the fields
- private JLabel amountLabel;
- private JLabel rateLabel;
- private JLabel numPeriodsLabel;
- private JLabel paymentLabel;
-
- //Strings for the labels
- private static String amountString = "Loan Amount: ";
- private static String rateString = "APR (%): ";
- private static String numPeriodsString = "Years: ";
- private static String paymentString = "Monthly Payment: ";
-
- //Fields for data entry
- private JFormattedTextField amountField;
- private JFormattedTextField rateField;
- private JFormattedTextField numPeriodsField;
- private JFormattedTextField paymentField;
-
- //Formats to format and parse numbers
- private NumberFormat amountFormat;
- private NumberFormat percentFormat;
- private NumberFormat paymentFormat;
-
- public FormattedTextFieldDemo() {
- super(new BorderLayout());
- setUpFormats();
- double payment = computePayment(amount,
- rate,
- numPeriods);
-
- //Create the labels.
- amountLabel = new JLabel(amountString);
- rateLabel = new JLabel(rateString);
- numPeriodsLabel = new JLabel(numPeriodsString);
- paymentLabel = new JLabel(paymentString);
-
- //Create the text fields and set them up.
- amountField = new JFormattedTextField(amountFormat);
- amountField.setValue(new Double(amount));
- amountField.setColumns(10);
- amountField.addPropertyChangeListener("value", this);
-
- rateField = new JFormattedTextField(percentFormat);
- rateField.setValue(new Double(rate));
- rateField.setColumns(10);
- rateField.addPropertyChangeListener("value", this);
-
- numPeriodsField = new JFormattedTextField();
- numPeriodsField.setValue(new Integer(numPeriods));
- numPeriodsField.setColumns(10);
- numPeriodsField.addPropertyChangeListener("value", this);
-
- paymentField = new JFormattedTextField(paymentFormat);
- paymentField.setValue(new Double(payment));
- paymentField.setColumns(10);
- paymentField.setEditable(false);
- paymentField.setForeground(Color.red);
-
- //Tell accessibility tools about label/textfield pairs.
- amountLabel.setLabelFor(amountField);
- rateLabel.setLabelFor(rateField);
- numPeriodsLabel.setLabelFor(numPeriodsField);
- paymentLabel.setLabelFor(paymentField);
-
- //Lay out the labels in a panel.
- JPanel labelPane = new JPanel(new GridLayout(0,1));
- labelPane.add(amountLabel);
- labelPane.add(rateLabel);
- labelPane.add(numPeriodsLabel);
- labelPane.add(paymentLabel);
-
- //Layout the text fields in a panel.
- JPanel fieldPane = new JPanel(new GridLayout(0,1));
- fieldPane.add(amountField);
- fieldPane.add(rateField);
- fieldPane.add(numPeriodsField);
- fieldPane.add(paymentField);
-
- //Put the panels in this panel, labels on left,
- //text fields on right.
- setBorder(BorderFactory.createEmptyBorder(20, 20, 20, 20));
- add(labelPane, BorderLayout.CENTER);
- add(fieldPane, BorderLayout.LINE_END);
- }
-
- /** Called when a field's "value" property changes. */
- public void propertyChange(PropertyChangeEvent e) {
- Object source = e.getSource();
- if (source == amountField) {
- amount = ((Number)amountField.getValue()).doubleValue();
- } else if (source == rateField) {
- rate = ((Number)rateField.getValue()).doubleValue();
- } else if (source == numPeriodsField) {
- numPeriods = ((Number)numPeriodsField.getValue()).intValue();
- }
-
- double payment = computePayment(amount, rate, numPeriods);
- paymentField.setValue(new Double(payment));
- }
-
- /**
- * Create the GUI and show it. For thread safety,
- * this method should be invoked from the
- * event dispatch thread.
- */
- private static void createAndShowGUI() {
- //Create and set up the window.
- JFrame frame = new JFrame("FormattedTextFieldDemo");
- frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
-
- //Add contents to the window.
- frame.add(new FormattedTextFieldDemo());
-
- //Display the window.
- frame.pack();
- frame.setVisible(true);
- }
-
- public static void main(String[] args) {
- //Schedule a job for the event dispatch thread:
- //creating and showing this application's GUI.
- SwingUtilities.invokeLater(new Runnable() {
- public void run() {
- //Turn off metal's use of bold fonts
- UIManager.put("swing.boldMetal", Boolean.FALSE);
- createAndShowGUI();
- }
- });
- }
-
- //Compute the monthly payment based on the loan amount,
- //APR, and length of loan.
- double computePayment(double loanAmt, double rate, int numPeriods) {
- double I, partial1, denominator, answer;
-
- numPeriods *= 12; //get number of months
- if (rate > 0.01) {
- I = rate / 100.0 / 12.0; //get monthly rate from annual
- partial1 = Math.pow((1 + I), (0.0 - numPeriods));
- denominator = (1 - partial1) / I;
- } else { //rate ~= 0
- denominator = numPeriods;
- }
-
- answer = (-1 * loanAmt) / denominator;
- return answer;
- }
-
- //Create and set up number formats. These objects also
- //parse numbers input by user.
- private void setUpFormats() {
- amountFormat = NumberFormat.getNumberInstance();
-
- percentFormat = NumberFormat.getNumberInstance();
- percentFormat.setMinimumFractionDigits(3);
-
- paymentFormat = NumberFormat.getCurrencyInstance();
- }
-}
+package gov.epa.festc.util;
+
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.GridLayout;
+import java.beans.PropertyChangeEvent;
+import java.beans.PropertyChangeListener;
+import java.text.NumberFormat;
+
+import javax.swing.BorderFactory;
+import javax.swing.JFormattedTextField;
+import javax.swing.JFrame;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.SwingUtilities;
+import javax.swing.UIManager;
+
+/**
+ * FormattedTextFieldDemo.java requires no other files.
+ *
+ * It implements a mortgage calculator that uses four
+ * JFormattedTextFields.
+ */
+public class FormattedTextFieldDemo extends JPanel
+ implements PropertyChangeListener {
+ /**
+ *
+ */
+ private static final long serialVersionUID = -4839273043247054365L;
+ //Values for the fields
+ private double amount = 100000;
+ private double rate = 7.5; //7.5%
+ private int numPeriods = 30;
+
+ //Labels to identify the fields
+ private JLabel amountLabel;
+ private JLabel rateLabel;
+ private JLabel numPeriodsLabel;
+ private JLabel paymentLabel;
+
+ //Strings for the labels
+ private static String amountString = "Loan Amount: ";
+ private static String rateString = "APR (%): ";
+ private static String numPeriodsString = "Years: ";
+ private static String paymentString = "Monthly Payment: ";
+
+ //Fields for data entry
+ private JFormattedTextField amountField;
+ private JFormattedTextField rateField;
+ private JFormattedTextField numPeriodsField;
+ private JFormattedTextField paymentField;
+
+ //Formats to format and parse numbers
+ private NumberFormat amountFormat;
+ private NumberFormat percentFormat;
+ private NumberFormat paymentFormat;
+
+ public FormattedTextFieldDemo() {
+ super(new BorderLayout());
+ setUpFormats();
+ double payment = computePayment(amount,
+ rate,
+ numPeriods);
+
+ //Create the labels.
+ amountLabel = new JLabel(amountString);
+ rateLabel = new JLabel(rateString);
+ numPeriodsLabel = new JLabel(numPeriodsString);
+ paymentLabel = new JLabel(paymentString);
+
+ //Create the text fields and set them up.
+ amountField = new JFormattedTextField(amountFormat);
+ amountField.setValue(new Double(amount));
+ amountField.setColumns(10);
+ amountField.addPropertyChangeListener("value", this);
+
+ rateField = new JFormattedTextField(percentFormat);
+ rateField.setValue(new Double(rate));
+ rateField.setColumns(10);
+ rateField.addPropertyChangeListener("value", this);
+
+ numPeriodsField = new JFormattedTextField();
+ numPeriodsField.setValue(new Integer(numPeriods));
+ numPeriodsField.setColumns(10);
+ numPeriodsField.addPropertyChangeListener("value", this);
+
+ paymentField = new JFormattedTextField(paymentFormat);
+ paymentField.setValue(new Double(payment));
+ paymentField.setColumns(10);
+ paymentField.setEditable(false);
+ paymentField.setForeground(Color.red);
+
+ //Tell accessibility tools about label/textfield pairs.
+ amountLabel.setLabelFor(amountField);
+ rateLabel.setLabelFor(rateField);
+ numPeriodsLabel.setLabelFor(numPeriodsField);
+ paymentLabel.setLabelFor(paymentField);
+
+ //Lay out the labels in a panel.
+ JPanel labelPane = new JPanel(new GridLayout(0,1));
+ labelPane.add(amountLabel);
+ labelPane.add(rateLabel);
+ labelPane.add(numPeriodsLabel);
+ labelPane.add(paymentLabel);
+
+ //Layout the text fields in a panel.
+ JPanel fieldPane = new JPanel(new GridLayout(0,1));
+ fieldPane.add(amountField);
+ fieldPane.add(rateField);
+ fieldPane.add(numPeriodsField);
+ fieldPane.add(paymentField);
+
+ //Put the panels in this panel, labels on left,
+ //text fields on right.
+ setBorder(BorderFactory.createEmptyBorder(20, 20, 20, 20));
+ add(labelPane, BorderLayout.CENTER);
+ add(fieldPane, BorderLayout.LINE_END);
+ }
+
+ /** Called when a field's "value" property changes. */
+ public void propertyChange(PropertyChangeEvent e) {
+ Object source = e.getSource();
+ if (source == amountField) {
+ amount = ((Number)amountField.getValue()).doubleValue();
+ } else if (source == rateField) {
+ rate = ((Number)rateField.getValue()).doubleValue();
+ } else if (source == numPeriodsField) {
+ numPeriods = ((Number)numPeriodsField.getValue()).intValue();
+ }
+
+ double payment = computePayment(amount, rate, numPeriods);
+ paymentField.setValue(new Double(payment));
+ }
+
+ /**
+ * Create the GUI and show it. For thread safety,
+ * this method should be invoked from the
+ * event dispatch thread.
+ */
+ private static void createAndShowGUI() {
+ //Create and set up the window.
+ JFrame frame = new JFrame("FormattedTextFieldDemo");
+ frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
+
+ //Add contents to the window.
+ frame.add(new FormattedTextFieldDemo());
+
+ //Display the window.
+ frame.pack();
+ frame.setVisible(true);
+ }
+
+ public static void main(String[] args) {
+ //Schedule a job for the event dispatch thread:
+ //creating and showing this application's GUI.
+ SwingUtilities.invokeLater(new Runnable() {
+ public void run() {
+ //Turn off metal's use of bold fonts
+ UIManager.put("swing.boldMetal", Boolean.FALSE);
+ createAndShowGUI();
+ }
+ });
+ }
+
+ //Compute the monthly payment based on the loan amount,
+ //APR, and length of loan.
+ double computePayment(double loanAmt, double rate, int numPeriods) {
+ double I, partial1, denominator, answer;
+
+ numPeriods *= 12; //get number of months
+ if (rate > 0.01) {
+ I = rate / 100.0 / 12.0; //get monthly rate from annual
+ partial1 = Math.pow((1 + I), (0.0 - numPeriods));
+ denominator = (1 - partial1) / I;
+ } else { //rate ~= 0
+ denominator = numPeriods;
+ }
+
+ answer = (-1 * loanAmt) / denominator;
+ return answer;
+ }
+
+ //Create and set up number formats. These objects also
+ //parse numbers input by user.
+ private void setUpFormats() {
+ amountFormat = NumberFormat.getNumberInstance();
+
+ percentFormat = NumberFormat.getNumberInstance();
+ percentFormat.setMinimumFractionDigits(3);
+
+ paymentFormat = NumberFormat.getCurrencyInstance();
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/util/Messenger.java b/festc_core/src/gov/epa/festc/util/Messenger.java
index 672c660..71251b0 100644
--- a/festc_core/src/gov/epa/festc/util/Messenger.java
+++ b/festc_core/src/gov/epa/festc/util/Messenger.java
@@ -1,51 +1,51 @@
-package gov.epa.festc.util;
-
-import java.io.BufferedReader;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import java.io.OutputStream;
-import java.io.PrintWriter;
-
-public class Messenger extends Thread {
- InputStream is;
- String type;
- OutputStream os;
-
- public Messenger(InputStream is, String type) {
- this(is, type, null);
- }
-
- public Messenger(InputStream is, String type, OutputStream redirect) {
- this.is = is;
- this.type = type;
- this.os = redirect;
- }
-
- public void run() {
- try {
- PrintWriter pw = null;
- if (os != null)
- pw = new PrintWriter(os);
-
- InputStreamReader isr = new InputStreamReader(is);
- BufferedReader br = new BufferedReader(isr);
- String line = null;
-
- while ((line = br.readLine()) != null) {
- if (pw != null)
- pw.println(line);
- System.out.println(type + ">" + line);
- }
-
- br.close();
-
- if (pw != null) {
- pw.flush();
- pw.close();
- }
- } catch (IOException ioe) {
- ioe.printStackTrace();
- }
- }
-}
+package gov.epa.festc.util;
+
+import java.io.BufferedReader;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.io.OutputStream;
+import java.io.PrintWriter;
+
+public class Messenger extends Thread {
+ InputStream is;
+ String type;
+ OutputStream os;
+
+ public Messenger(InputStream is, String type) {
+ this(is, type, null);
+ }
+
+ public Messenger(InputStream is, String type, OutputStream redirect) {
+ this.is = is;
+ this.type = type;
+ this.os = redirect;
+ }
+
+ public void run() {
+ try {
+ PrintWriter pw = null;
+ if (os != null)
+ pw = new PrintWriter(os);
+
+ InputStreamReader isr = new InputStreamReader(is);
+ BufferedReader br = new BufferedReader(isr);
+ String line = null;
+
+ while ((line = br.readLine()) != null) {
+ if (pw != null)
+ pw.println(line);
+ System.out.println(type + ">" + line);
+ }
+
+ br.close();
+
+ if (pw != null) {
+ pw.flush();
+ pw.close();
+ }
+ } catch (IOException ioe) {
+ ioe.printStackTrace();
+ }
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/util/ModelYearInconsistantException.java b/festc_core/src/gov/epa/festc/util/ModelYearInconsistantException.java
index 11a9723..03539a2 100644
--- a/festc_core/src/gov/epa/festc/util/ModelYearInconsistantException.java
+++ b/festc_core/src/gov/epa/festc/util/ModelYearInconsistantException.java
@@ -1,13 +1,13 @@
-package gov.epa.festc.util;
-
-public class ModelYearInconsistantException extends Exception {
-
- /**
- *
- */
- private static final long serialVersionUID = 4511072740276009475L;
-
- public ModelYearInconsistantException(String msg) {
- super(msg);
- }
-}
+package gov.epa.festc.util;
+
+public class ModelYearInconsistantException extends Exception {
+
+ /**
+ *
+ */
+ private static final long serialVersionUID = 4511072740276009475L;
+
+ public ModelYearInconsistantException(String msg) {
+ super(msg);
+ }
+}
diff --git a/festc_core/src/gov/epa/festc/util/SpringLayoutGenerator.java b/festc_core/src/gov/epa/festc/util/SpringLayoutGenerator.java
index 218f776..867dea6 100644
--- a/festc_core/src/gov/epa/festc/util/SpringLayoutGenerator.java
+++ b/festc_core/src/gov/epa/festc/util/SpringLayoutGenerator.java
@@ -1,173 +1,173 @@
-package gov.epa.festc.util;
-
-import java.awt.BorderLayout;
-import java.awt.Component;
-import java.awt.Container;
-
-import javax.swing.JComponent;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.Spring;
-import javax.swing.SpringLayout;
-
-/**
- * A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout. These utilities
- * are used by several programs, such as SpringBox and SpringCompactGrid.
- */
-public class SpringLayoutGenerator {
-
- /**
- * Aligns the first rows * cols components of parent in a grid. Each
- * component is as big as the maximum preferred width and height of the components. The parent is made just big
- * enough to fit them all.
- *
- * @param rows
- * number of rows
- * @param cols
- * number of columns
- * @param initialX
- * x location to start the grid at
- * @param initialY
- * y location to start the grid at
- * @param xPad
- * x padding between cells
- * @param yPad
- * y padding between cells
- */
- public void makeGrid(Container parent, int rows, int cols, int initialX, int initialY, int xPad, int yPad) {
- SpringLayout layout;
- layout = (SpringLayout) parent.getLayout();
-
- Spring xPadSpring = Spring.constant(xPad);
- Spring yPadSpring = Spring.constant(yPad);
- Spring initialXSpring = Spring.constant(initialX);
- Spring initialYSpring = Spring.constant(initialY);
- int max = rows * cols;
-
- // Calculate Springs that are the max of the width/height so that all
- // cells have the same size.
- Spring maxWidthSpring = layout.getConstraints(parent.getComponent(0)).getWidth();
- Spring maxHeightSpring = layout.getConstraints(parent.getComponent(0)).getWidth();
- for (int i = 1; i < max; i++) {
- SpringLayout.Constraints cons = layout.getConstraints(parent.getComponent(i));
-
- maxWidthSpring = Spring.max(maxWidthSpring, cons.getWidth());
- maxHeightSpring = Spring.max(maxHeightSpring, cons.getHeight());
- }
-
- // Apply the new width/height Spring. This forces all the
- // components to have the same size.
- for (int i = 0; i < max; i++) {
- SpringLayout.Constraints cons = layout.getConstraints(parent.getComponent(i));
-
- cons.setWidth(maxWidthSpring);
- cons.setHeight(maxHeightSpring);
- }
-
- // Then adjust the x/y constraints of all the cells so that they
- // are aligned in a grid.
- SpringLayout.Constraints lastCons = null;
- SpringLayout.Constraints lastRowCons = null;
- for (int i = 0; i < max; i++) {
- SpringLayout.Constraints cons = layout.getConstraints(parent.getComponent(i));
- if (i % cols == 0) { // start of new row
- lastRowCons = lastCons;
- cons.setX(initialXSpring);
- } else { // x position depends on previous component
- cons.setX(Spring.sum(lastCons.getConstraint(SpringLayout.EAST), xPadSpring));
- }
-
- if (i / cols == 0) { // first row
- cons.setY(initialYSpring);
- } else { // y position depends on previous row
- cons.setY(Spring.sum(lastRowCons.getConstraint(SpringLayout.SOUTH), yPadSpring));
- }
- lastCons = cons;
- }
-
- // Set the parent's size.
- SpringLayout.Constraints pCons = layout.getConstraints(parent);
- pCons.setConstraint(SpringLayout.SOUTH, Spring.sum(Spring.constant(yPad), lastCons
- .getConstraint(SpringLayout.SOUTH)));
- pCons.setConstraint(SpringLayout.EAST, Spring.sum(Spring.constant(xPad), lastCons
- .getConstraint(SpringLayout.EAST)));
- }
-
- /* Used by makeCompactGrid. */
- private SpringLayout.Constraints getConstraintsForCell(int row, int col, Container parent, int cols) {
- SpringLayout layout = (SpringLayout) parent.getLayout();
- Component c = parent.getComponent(row * cols + col);
- return layout.getConstraints(c);
- }
-
- /**
- * Aligns the first rows * cols components of parent in a grid. Each
- * component in a column is as wide as the maximum preferred width of the components in that column; height is
- * similarly determined for each row. The parent is made just big enough to fit them all.
- *
- * @param rows
- * number of rows
- * @param cols
- * number of columns
- * @param initialX
- * x location to start the grid at
- * @param initialY
- * y location to start the grid at
- * @param xPad
- * x padding between cells
- * @param yPad
- * y padding between cells
- */
- public void makeCompactGrid(Container parent, int rows, int cols, int initialX, int initialY, int xPad, int yPad) {
- SpringLayout layout;
- layout = (SpringLayout) parent.getLayout();
-
- // Align all cells in each column and make them the same width.
- Spring x = Spring.constant(initialX);
- for (int c = 0; c < cols; c++) {
- Spring width = Spring.constant(0);
- for (int r = 0; r < rows; r++) {
- width = Spring.max(width, getConstraintsForCell(r, c, parent, cols).getWidth());
- }
- for (int r = 0; r < rows; r++) {
- SpringLayout.Constraints constraints = getConstraintsForCell(r, c, parent, cols);
- constraints.setX(x);
- constraints.setWidth(width);
- }
- x = Spring.sum(x, Spring.sum(width, Spring.constant(xPad)));
- }
-
- // Align all cells in each row and make them the same height.
- Spring y = Spring.constant(initialY);
- for (int r = 0; r < rows; r++) {
- Spring height = Spring.constant(0);
- for (int c = 0; c < cols; c++) {
- height = Spring.max(height, getConstraintsForCell(r, c, parent, cols).getHeight());
- }
- for (int c = 0; c < cols; c++) {
- SpringLayout.Constraints constraints = getConstraintsForCell(r, c, parent, cols);
- constraints.setY(y);
- constraints.setHeight(height);
- }
- y = Spring.sum(y, Spring.sum(height, Spring.constant(yPad)));
- }
-
- // Set the parent's size.
- SpringLayout.Constraints pCons = layout.getConstraints(parent);
- pCons.setConstraint(SpringLayout.SOUTH, y);
- pCons.setConstraint(SpringLayout.EAST, x);
- }
-
- public void addLabelWidgetPair(String label, JComponent widget, JPanel panel) {
- addWidgetPair(new JLabel(label), widget, panel);
- }
-
- public void addWidgetPair(JComponent widget1, JComponent widget2, JPanel panel) {
- panel.add(widget1);
-
- JPanel widgetPanel = new JPanel(new BorderLayout());
- widgetPanel.add(widget2, BorderLayout.LINE_START);
- panel.add(widgetPanel);
- }
-
-}
+package gov.epa.festc.util;
+
+import java.awt.BorderLayout;
+import java.awt.Component;
+import java.awt.Container;
+
+import javax.swing.JComponent;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.Spring;
+import javax.swing.SpringLayout;
+
+/**
+ * A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout. These utilities
+ * are used by several programs, such as SpringBox and SpringCompactGrid.
+ */
+public class SpringLayoutGenerator {
+
+ /**
+ * Aligns the first rows * cols components of parent in a grid. Each
+ * component is as big as the maximum preferred width and height of the components. The parent is made just big
+ * enough to fit them all.
+ *
+ * @param rows
+ * number of rows
+ * @param cols
+ * number of columns
+ * @param initialX
+ * x location to start the grid at
+ * @param initialY
+ * y location to start the grid at
+ * @param xPad
+ * x padding between cells
+ * @param yPad
+ * y padding between cells
+ */
+ public void makeGrid(Container parent, int rows, int cols, int initialX, int initialY, int xPad, int yPad) {
+ SpringLayout layout;
+ layout = (SpringLayout) parent.getLayout();
+
+ Spring xPadSpring = Spring.constant(xPad);
+ Spring yPadSpring = Spring.constant(yPad);
+ Spring initialXSpring = Spring.constant(initialX);
+ Spring initialYSpring = Spring.constant(initialY);
+ int max = rows * cols;
+
+ // Calculate Springs that are the max of the width/height so that all
+ // cells have the same size.
+ Spring maxWidthSpring = layout.getConstraints(parent.getComponent(0)).getWidth();
+ Spring maxHeightSpring = layout.getConstraints(parent.getComponent(0)).getWidth();
+ for (int i = 1; i < max; i++) {
+ SpringLayout.Constraints cons = layout.getConstraints(parent.getComponent(i));
+
+ maxWidthSpring = Spring.max(maxWidthSpring, cons.getWidth());
+ maxHeightSpring = Spring.max(maxHeightSpring, cons.getHeight());
+ }
+
+ // Apply the new width/height Spring. This forces all the
+ // components to have the same size.
+ for (int i = 0; i < max; i++) {
+ SpringLayout.Constraints cons = layout.getConstraints(parent.getComponent(i));
+
+ cons.setWidth(maxWidthSpring);
+ cons.setHeight(maxHeightSpring);
+ }
+
+ // Then adjust the x/y constraints of all the cells so that they
+ // are aligned in a grid.
+ SpringLayout.Constraints lastCons = null;
+ SpringLayout.Constraints lastRowCons = null;
+ for (int i = 0; i < max; i++) {
+ SpringLayout.Constraints cons = layout.getConstraints(parent.getComponent(i));
+ if (i % cols == 0) { // start of new row
+ lastRowCons = lastCons;
+ cons.setX(initialXSpring);
+ } else { // x position depends on previous component
+ cons.setX(Spring.sum(lastCons.getConstraint(SpringLayout.EAST), xPadSpring));
+ }
+
+ if (i / cols == 0) { // first row
+ cons.setY(initialYSpring);
+ } else { // y position depends on previous row
+ cons.setY(Spring.sum(lastRowCons.getConstraint(SpringLayout.SOUTH), yPadSpring));
+ }
+ lastCons = cons;
+ }
+
+ // Set the parent's size.
+ SpringLayout.Constraints pCons = layout.getConstraints(parent);
+ pCons.setConstraint(SpringLayout.SOUTH, Spring.sum(Spring.constant(yPad), lastCons
+ .getConstraint(SpringLayout.SOUTH)));
+ pCons.setConstraint(SpringLayout.EAST, Spring.sum(Spring.constant(xPad), lastCons
+ .getConstraint(SpringLayout.EAST)));
+ }
+
+ /* Used by makeCompactGrid. */
+ private SpringLayout.Constraints getConstraintsForCell(int row, int col, Container parent, int cols) {
+ SpringLayout layout = (SpringLayout) parent.getLayout();
+ Component c = parent.getComponent(row * cols + col);
+ return layout.getConstraints(c);
+ }
+
+ /**
+ * Aligns the first rows * cols components of parent in a grid. Each
+ * component in a column is as wide as the maximum preferred width of the components in that column; height is
+ * similarly determined for each row. The parent is made just big enough to fit them all.
+ *
+ * @param rows
+ * number of rows
+ * @param cols
+ * number of columns
+ * @param initialX
+ * x location to start the grid at
+ * @param initialY
+ * y location to start the grid at
+ * @param xPad
+ * x padding between cells
+ * @param yPad
+ * y padding between cells
+ */
+ public void makeCompactGrid(Container parent, int rows, int cols, int initialX, int initialY, int xPad, int yPad) {
+ SpringLayout layout;
+ layout = (SpringLayout) parent.getLayout();
+
+ // Align all cells in each column and make them the same width.
+ Spring x = Spring.constant(initialX);
+ for (int c = 0; c < cols; c++) {
+ Spring width = Spring.constant(0);
+ for (int r = 0; r < rows; r++) {
+ width = Spring.max(width, getConstraintsForCell(r, c, parent, cols).getWidth());
+ }
+ for (int r = 0; r < rows; r++) {
+ SpringLayout.Constraints constraints = getConstraintsForCell(r, c, parent, cols);
+ constraints.setX(x);
+ constraints.setWidth(width);
+ }
+ x = Spring.sum(x, Spring.sum(width, Spring.constant(xPad)));
+ }
+
+ // Align all cells in each row and make them the same height.
+ Spring y = Spring.constant(initialY);
+ for (int r = 0; r < rows; r++) {
+ Spring height = Spring.constant(0);
+ for (int c = 0; c < cols; c++) {
+ height = Spring.max(height, getConstraintsForCell(r, c, parent, cols).getHeight());
+ }
+ for (int c = 0; c < cols; c++) {
+ SpringLayout.Constraints constraints = getConstraintsForCell(r, c, parent, cols);
+ constraints.setY(y);
+ constraints.setHeight(height);
+ }
+ y = Spring.sum(y, Spring.sum(height, Spring.constant(yPad)));
+ }
+
+ // Set the parent's size.
+ SpringLayout.Constraints pCons = layout.getConstraints(parent);
+ pCons.setConstraint(SpringLayout.SOUTH, y);
+ pCons.setConstraint(SpringLayout.EAST, x);
+ }
+
+ public void addLabelWidgetPair(String label, JComponent widget, JPanel panel) {
+ addWidgetPair(new JLabel(label), widget, panel);
+ }
+
+ public void addWidgetPair(JComponent widget1, JComponent widget2, JPanel panel) {
+ panel.add(widget1);
+
+ JPanel widgetPanel = new JPanel(new BorderLayout());
+ widgetPanel.add(widget2, BorderLayout.LINE_START);
+ panel.add(widgetPanel);
+ }
+
+}
diff --git a/festc_dist/.classpath b/festc_dist/.classpath
index e9bcd51..ac37fb2 100644
--- a/festc_dist/.classpath
+++ b/festc_dist/.classpath
@@ -1,5 +1,5 @@
-
-
-
-
-
+
+
+
+
+
diff --git a/festc_dist/.project b/festc_dist/.project
index 2f166aa..ed78eae 100644
--- a/festc_dist/.project
+++ b/festc_dist/.project
@@ -1,17 +1,17 @@
-
-
- festc_dist
-
-
-
-
-
- org.eclipse.jdt.core.javabuilder
-
-
-
-
-
- org.eclipse.jdt.core.javanature
-
-
+
+
+ festc_dist
+
+
+
+
+
+ org.eclipse.jdt.core.javabuilder
+
+
+
+
+
+ org.eclipse.jdt.core.javanature
+
+
diff --git a/festc_dist/build.properties b/festc_dist/build.properties
index 13bb0e6..b8beba5 100644
--- a/festc_dist/build.properties
+++ b/festc_dist/build.properties
@@ -1,17 +1,19 @@
-########
-# Please copy it as build.properties (in the same folder as this file),
-# and change the properties as needed
-
-# Properties for specify a local distribution directory
-
-# app
-app.name=festc
-app.version=1.3
-
-
-# basic settings - use '/' as a separator
-#jre.home=/home/dyang/application/jdk1.7.0_07/jre
-#jre.home=/home/dyang/application/jdk1.7.0_45/jre
-jre.home=/home/dyang/application/jdk1.7.0_40/jre
-build.home=/home/dyang
+########
+# Please copy it as build.properties (in the same folder as this file),
+# and change the properties as needed
+
+# Properties for specify a local distribution directory
+
+# app
+app.name=festc
+app.version=1.4
+
+
+# basic settings - use '/' as a separator
+#jre.home=/home/dyang/application/jdk1.7.0_07/jre
+#jre.home=/home/dyang/application/jdk1.7.0_45/jre
+#jre.home=/home/dyang/application/jdk1.7.0_40/jre
+jre.home=C:/Program Files/Java/jdk1.8.0_144/jre
+#build.home=/home/dyang
+build.home=C:/Users/csimmo02/FESTC_jars/build
install.dir=festc_install
\ No newline at end of file
diff --git a/festc_dist/build2.properties b/festc_dist/build2.properties
new file mode 100644
index 0000000..2400478
--- /dev/null
+++ b/festc_dist/build2.properties
@@ -0,0 +1,17 @@
+########
+# Please copy it as build.properties (in the same folder as this file),
+# and change the properties as needed
+
+# Properties for specify a local distribution directory
+
+# app
+app.name=festc
+app.version=1.3
+
+
+# basic settings - use '/' as a separator
+#jre.home=/home/dyang/application/jdk1.7.0_07/jre
+#jre.home=/home/dyang/application/jdk1.7.0_45/jre
+jre.home=/home/dyang/application/jdk1.7.0_40/jre
+build.home=/home/dyang
+install.dir=festc_install
\ No newline at end of file
diff --git a/festc_dist/build_32bit.properties b/festc_dist/build_32bit.properties
index 6d52862..b66d920 100644
--- a/festc_dist/build_32bit.properties
+++ b/festc_dist/build_32bit.properties
@@ -1,17 +1,17 @@
-########
-# Please copy it as build.properties (in the same folder as this file),
-# and change the properties as needed
-
-# Properties for specify a local distribution directory
-
-# app
-app.name=festc
-app.version=2.0
-
-
-# basic settings - use '/' as a separator
-#jre.home=/Users/dyang/Applications/jdk1.8.0_91_64bits/jre
-jre.home=/Users/dyang/Applications/jdk1.8.0_91_32bits/jre
-#jre.home=/Users/dyang/Downloads/jdk1.7.0_51/jre
-build.home=/Users/dyang
+########
+# Please copy it as build.properties (in the same folder as this file),
+# and change the properties as needed
+
+# Properties for specify a local distribution directory
+
+# app
+app.name=festc
+app.version=2.0
+
+
+# basic settings - use '/' as a separator
+#jre.home=/Users/dyang/Applications/jdk1.8.0_91_64bits/jre
+jre.home=/Users/dyang/Applications/jdk1.8.0_91_32bits/jre
+#jre.home=/Users/dyang/Downloads/jdk1.7.0_51/jre
+build.home=/Users/dyang
install.dir=festc_install_32bits
\ No newline at end of file
diff --git a/festc_dist/build_64bit.properties b/festc_dist/build_64bit.properties
index 319e08d..22bdb14 100644
--- a/festc_dist/build_64bit.properties
+++ b/festc_dist/build_64bit.properties
@@ -1,17 +1,17 @@
-########
-# Please copy it as build.properties (in the same folder as this file),
-# and change the properties as needed
-
-# Properties for specify a local distribution directory
-
-# app
-app.name=festc
-app.version=1.4
-
-
-# basic settings - use '/' as a separator
-jre.home=/Users/dyang/Applications/jdk1.8.0_91_64bits/jre
-#jre.home=/Users/dyang/Applications/jdk1.8.0_91_32bits/jre
-#jre.home=/Users/dyang/Downloads/jdk1.7.0_51/jre
-build.home=/Users/dyang
+########
+# Please copy it as build.properties (in the same folder as this file),
+# and change the properties as needed
+
+# Properties for specify a local distribution directory
+
+# app
+app.name=festc
+app.version=1.4
+
+
+# basic settings - use '/' as a separator
+jre.home=/Users/dyang/Applications/jdk1.8.0_91_64bits/jre
+#jre.home=/Users/dyang/Applications/jdk1.8.0_91_32bits/jre
+#jre.home=/Users/dyang/Downloads/jdk1.7.0_51/jre
+build.home=/Users/dyang
install.dir=festc_install_64bits
\ No newline at end of file
diff --git a/festc_dist/build_dist.xml b/festc_dist/build_dist.xml
index cc75d96..c63d82f 100644
--- a/festc_dist/build_dist.xml
+++ b/festc_dist/build_dist.xml
@@ -1,206 +1,223 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/festc_dist/build_dist_32bit.xml b/festc_dist/build_dist_32bit.xml
index 6b1ae55..680aaf6 100644
--- a/festc_dist/build_dist_32bit.xml
+++ b/festc_dist/build_dist_32bit.xml
@@ -1,209 +1,209 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/festc_dist/build_dist_64bit.xml b/festc_dist/build_dist_64bit.xml
index 8384b58..41f4ccc 100644
--- a/festc_dist/build_dist_64bit.xml
+++ b/festc_dist/build_dist_64bit.xml
@@ -1,209 +1,209 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/festc_dist/distfiles/Functions.nsh b/festc_dist/distfiles/Functions.nsh
index 00abe39..62a4584 100644
--- a/festc_dist/distfiles/Functions.nsh
+++ b/festc_dist/distfiles/Functions.nsh
@@ -1,254 +1,254 @@
-!ifndef OTHER_MACROS_NSH
-!define OTHER_MACROS_NSH
-
-; From http://nsis.sourceforge.net/wiki/A_slightly_better_Java_Launcher
-; Find JRE (javaw.exe)
-; 1 - in .\jre directory (JRE Installed with application)
-; 2 - in JAVA_HOME environment variable
-; 3 - in the registry
-; 4 - assume javaw.exe in current dir or PATH
-; Stores the JRE on the top of the stack
-Function GetJRE
- Push $R0
- Push $R1
-
- ClearErrors
- StrCpy $R0 "$EXEDIR\jre\bin\javaw.exe"
- IfFileExists $R0 JreFound
- StrCpy $R0 ""
-
- ClearErrors
- ReadEnvStr $R0 "JAVA_HOME"
- StrCpy $R0 "$R0\bin\javaw.exe"
- IfErrors 0 JreFound
-
- ClearErrors
- ReadRegStr $R1 HKLM "SOFTWARE\JavaSoft\Java Runtime Environment" "CurrentVersion"
- ReadRegStr $R0 HKLM "SOFTWARE\JavaSoft\Java Runtime Environment\$R1" "JavaHome"
- StrCpy $R0 "$R0\bin\javaw.exe"
-
- IfErrors 0 JreFound
- StrCpy $R0 "javaw.exe"
-
- JreFound:
- Pop $R1
- Exch $R0
-FunctionEnd
-
-
- ; GetParameters
- ; input, none
- ; output, top of stack (replaces, with e.g. whatever)
- ; modifies no other variables.
-
-Function GetParameters
-
- Push $R0
- Push $R1
- Push $R2
- Push $R3
-
- StrCpy $R2 1
- StrLen $R3 $CMDLINE
-
- ;Check for quote or space
- StrCpy $R0 $CMDLINE $R2
- StrCmp $R0 '"' 0 +3
- StrCpy $R1 '"'
- Goto loop
- StrCpy $R1 " "
-
- loop:
- IntOp $R2 $R2 + 1
- StrCpy $R0 $CMDLINE 1 $R2
- StrCmp $R0 $R1 get
- StrCmp $R2 $R3 get
- Goto loop
-
- get:
- IntOp $R2 $R2 + 1
- StrCpy $R0 $CMDLINE 1 $R2
- StrCmp $R0 " " get
- StrCpy $R0 $CMDLINE "" $R2
-
- Pop $R3
- Pop $R2
- Pop $R1
- Exch $R0
-
-FunctionEnd
-
-; -- written by Alexis de Valence --
-; GetONEParameter
-
-; Usage:
-; Push 3 ; to get the 3rd parameter of the command line
-; Call GetONEParameter
-; Pop $R0 ; saves the result in $R0
-; returns an empty string if not found
-
-Function GetONEParameter
- Exch $R0
- Push $R1
- Push $R2
- Push $R3
- Push $R4
- Push $R5
- Push $R6
-
-; init variables
- IntOp $R5 $R0 + 1
- StrCpy $R2 0
- StrCpy $R4 1
- StrCpy $R6 0
-
- loop3: ; looking for a char that's not a space
- IntOp $R2 $R2 + 1
- StrCpy $R0 $CMDLINE 1 $R2
- StrCmp $R0 " " loop3
- StrCpy $R3 $R2 ; found the begining of the current parameter
-
-
- loop: ; scanning for the end of the current parameter
-
- StrCpy $R0 $CMDLINE 1 $R2
- StrCmp $R0 " " loop2
- StrCmp $R0 "" last
- IntOp $R2 $R2 + 1
- Goto loop
-
- last: ; there will be no other parameter to extract
- StrCpy $R6 1
-
- loop2: ; found the end of the current parameter
-
- IntCmp $R4 $R5 0 NextParam end
- StrCpy $R6 1 ; to quit after this process
-
- IntOp $R1 $R2 - $R3 ;number of letter of current parameter
- StrCpy $R0 $CMDLINE $R1 $R3 ; stores the result in R0
-
- NextParam:
- IntCmp $R6 1 end ; leave if found or if not enough parameters
-
- ; process the next parameter
- IntOp $R4 $R4 + 1
-
- Goto loop3
-
- end:
-
- Pop $R6 ; restore R0 - R6 to their initial value
- Pop $R5
- Pop $R4
- Pop $R3
- Pop $R2
- Pop $R1
-
- Exch $R0 ;Puts the result on the stack
-
- FunctionEnd
-
-
-; GetParameterValue
-; Chris Morgan 5/10/2004
-; Searches the command line input, retrieved using GetParameters, for the
-; value of an option given the option name. If no option is found the
-; default value is placed on the top of the stack upon function return
-;
-; Inputs - Top of stack is default if parameter isn't found,
-; second in stack is parameter to search for, ex. "OUTPUT"
-; Outputs - Top of the stack contains the value of this parameter
-; So if the command line contained /OUTPUT=somedirectory, "somedirectory"
-; will be on the top of the stack when this function returns
-;
-; Register usage
-;$R0 - default return value if the parameter isn't found
-;$R1 - input parameter, for example OUTPUT from the above example
-;$R2 - the length of the search, this is the search parameter+2
-; as we have '/OUTPUT='
-;$R3 - the command line string
-;$R4 - result from StrStr's
-;$R5 - search for ' ' or '"'
-
-Function GetParameterValue
- Exch $R0 ; get the default parameter into R1
- Exch ; exchange the top two
- Exch $R1 ; get the search parameter into $R0
-
- ;Preserve on the stack the registers we will use in this function
- Push $R2
- Push $R3
- Push $R4
- Push $R5
-
- Strlen $R2 $R1+1 ; store the length of the search string into R2
-
- Call GetParameters ;get the command line parameters
- Pop $R3 ; store the command line string in R3
- # search for quoted search string
- StrCpy $R5 '"' ; later on we want to search for a open quote
- Push $R3 ; push the 'search in' string onto the stack
- Push '$R1="' ; push the 'search for'
- Call StrStr
- Pop $R4
- StrCpy $R4 $R4 "" # skip quote
- StrCmp $R4 "" "" next
- # search for non-quoted search string
- StrCpy $R5 ' ' ; later on we want to search for a space
- Push $R3 ; push the command line back on the stack for searching
- Push '$R1=' ; search for the non-quoted search string
- Call StrStr
- Pop $R4
-next:
- StrCmp $R4 "" done ; if we didn't find anything then we are done
- # copy the value after /$R1=
- StrCpy $R0 $R4 "" $R2 ; copy commandline text beyond parameter into $R0
- # search for the next parameter so we can trim this extra text off
- Push $R0
- Push $R5
- Call StrStr ; search for the next parameter
- Pop $R4
- StrCmp $R4 "" done
- StrLen $R4 $R4
- StrCpy $R0 $R0 -$R4 ; using the length of the string beyond the value,
- ;copy only the value into $R0
-done:
- Pop $R5
- Pop $R4
- Pop $R3
- Pop $R2
- Pop $R1
- Exch $R0 ; put the value in $R0 at the top of the stack
-FunctionEnd
-
-Function StrStr
- Exch $R1 ; st=haystack,old$R1, $R1=needle
- Exch ; st=old$R1,haystack
- Exch $R2 ; st=old$R1,old$R2, $R2=haystack
- Push $R3
- Push $R4
- Push $R5
- StrLen $R3 $R1
- StrCpy $R4 0
- ; $R1=needle
- ; $R2=haystack
- ; $R3=len(needle)
- ; $R4=cnt
- ; $R5=tmp
- loop:
- StrCpy $R5 $R2 $R3 $R4
- StrCmp $R5 $R1 done
- StrCmp $R5 "" done
- IntOp $R4 $R4 + 1
- Goto loop
- done:
- StrCpy $R1 $R2 "" $R4
- Pop $R5
- Pop $R4
- Pop $R3
- Pop $R2
- Exch $R1
-FunctionEnd
-
-!endif
+!ifndef OTHER_MACROS_NSH
+!define OTHER_MACROS_NSH
+
+; From http://nsis.sourceforge.net/wiki/A_slightly_better_Java_Launcher
+; Find JRE (javaw.exe)
+; 1 - in .\jre directory (JRE Installed with application)
+; 2 - in JAVA_HOME environment variable
+; 3 - in the registry
+; 4 - assume javaw.exe in current dir or PATH
+; Stores the JRE on the top of the stack
+Function GetJRE
+ Push $R0
+ Push $R1
+
+ ClearErrors
+ StrCpy $R0 "$EXEDIR\jre\bin\javaw.exe"
+ IfFileExists $R0 JreFound
+ StrCpy $R0 ""
+
+ ClearErrors
+ ReadEnvStr $R0 "JAVA_HOME"
+ StrCpy $R0 "$R0\bin\javaw.exe"
+ IfErrors 0 JreFound
+
+ ClearErrors
+ ReadRegStr $R1 HKLM "SOFTWARE\JavaSoft\Java Runtime Environment" "CurrentVersion"
+ ReadRegStr $R0 HKLM "SOFTWARE\JavaSoft\Java Runtime Environment\$R1" "JavaHome"
+ StrCpy $R0 "$R0\bin\javaw.exe"
+
+ IfErrors 0 JreFound
+ StrCpy $R0 "javaw.exe"
+
+ JreFound:
+ Pop $R1
+ Exch $R0
+FunctionEnd
+
+
+ ; GetParameters
+ ; input, none
+ ; output, top of stack (replaces, with e.g. whatever)
+ ; modifies no other variables.
+
+Function GetParameters
+
+ Push $R0
+ Push $R1
+ Push $R2
+ Push $R3
+
+ StrCpy $R2 1
+ StrLen $R3 $CMDLINE
+
+ ;Check for quote or space
+ StrCpy $R0 $CMDLINE $R2
+ StrCmp $R0 '"' 0 +3
+ StrCpy $R1 '"'
+ Goto loop
+ StrCpy $R1 " "
+
+ loop:
+ IntOp $R2 $R2 + 1
+ StrCpy $R0 $CMDLINE 1 $R2
+ StrCmp $R0 $R1 get
+ StrCmp $R2 $R3 get
+ Goto loop
+
+ get:
+ IntOp $R2 $R2 + 1
+ StrCpy $R0 $CMDLINE 1 $R2
+ StrCmp $R0 " " get
+ StrCpy $R0 $CMDLINE "" $R2
+
+ Pop $R3
+ Pop $R2
+ Pop $R1
+ Exch $R0
+
+FunctionEnd
+
+; -- written by Alexis de Valence --
+; GetONEParameter
+
+; Usage:
+; Push 3 ; to get the 3rd parameter of the command line
+; Call GetONEParameter
+; Pop $R0 ; saves the result in $R0
+; returns an empty string if not found
+
+Function GetONEParameter
+ Exch $R0
+ Push $R1
+ Push $R2
+ Push $R3
+ Push $R4
+ Push $R5
+ Push $R6
+
+; init variables
+ IntOp $R5 $R0 + 1
+ StrCpy $R2 0
+ StrCpy $R4 1
+ StrCpy $R6 0
+
+ loop3: ; looking for a char that's not a space
+ IntOp $R2 $R2 + 1
+ StrCpy $R0 $CMDLINE 1 $R2
+ StrCmp $R0 " " loop3
+ StrCpy $R3 $R2 ; found the begining of the current parameter
+
+
+ loop: ; scanning for the end of the current parameter
+
+ StrCpy $R0 $CMDLINE 1 $R2
+ StrCmp $R0 " " loop2
+ StrCmp $R0 "" last
+ IntOp $R2 $R2 + 1
+ Goto loop
+
+ last: ; there will be no other parameter to extract
+ StrCpy $R6 1
+
+ loop2: ; found the end of the current parameter
+
+ IntCmp $R4 $R5 0 NextParam end
+ StrCpy $R6 1 ; to quit after this process
+
+ IntOp $R1 $R2 - $R3 ;number of letter of current parameter
+ StrCpy $R0 $CMDLINE $R1 $R3 ; stores the result in R0
+
+ NextParam:
+ IntCmp $R6 1 end ; leave if found or if not enough parameters
+
+ ; process the next parameter
+ IntOp $R4 $R4 + 1
+
+ Goto loop3
+
+ end:
+
+ Pop $R6 ; restore R0 - R6 to their initial value
+ Pop $R5
+ Pop $R4
+ Pop $R3
+ Pop $R2
+ Pop $R1
+
+ Exch $R0 ;Puts the result on the stack
+
+ FunctionEnd
+
+
+; GetParameterValue
+; Chris Morgan 5/10/2004
+; Searches the command line input, retrieved using GetParameters, for the
+; value of an option given the option name. If no option is found the
+; default value is placed on the top of the stack upon function return
+;
+; Inputs - Top of stack is default if parameter isn't found,
+; second in stack is parameter to search for, ex. "OUTPUT"
+; Outputs - Top of the stack contains the value of this parameter
+; So if the command line contained /OUTPUT=somedirectory, "somedirectory"
+; will be on the top of the stack when this function returns
+;
+; Register usage
+;$R0 - default return value if the parameter isn't found
+;$R1 - input parameter, for example OUTPUT from the above example
+;$R2 - the length of the search, this is the search parameter+2
+; as we have '/OUTPUT='
+;$R3 - the command line string
+;$R4 - result from StrStr's
+;$R5 - search for ' ' or '"'
+
+Function GetParameterValue
+ Exch $R0 ; get the default parameter into R1
+ Exch ; exchange the top two
+ Exch $R1 ; get the search parameter into $R0
+
+ ;Preserve on the stack the registers we will use in this function
+ Push $R2
+ Push $R3
+ Push $R4
+ Push $R5
+
+ Strlen $R2 $R1+1 ; store the length of the search string into R2
+
+ Call GetParameters ;get the command line parameters
+ Pop $R3 ; store the command line string in R3
+ # search for quoted search string
+ StrCpy $R5 '"' ; later on we want to search for a open quote
+ Push $R3 ; push the 'search in' string onto the stack
+ Push '$R1="' ; push the 'search for'
+ Call StrStr
+ Pop $R4
+ StrCpy $R4 $R4 "" # skip quote
+ StrCmp $R4 "" "" next
+ # search for non-quoted search string
+ StrCpy $R5 ' ' ; later on we want to search for a space
+ Push $R3 ; push the command line back on the stack for searching
+ Push '$R1=' ; search for the non-quoted search string
+ Call StrStr
+ Pop $R4
+next:
+ StrCmp $R4 "" done ; if we didn't find anything then we are done
+ # copy the value after /$R1=
+ StrCpy $R0 $R4 "" $R2 ; copy commandline text beyond parameter into $R0
+ # search for the next parameter so we can trim this extra text off
+ Push $R0
+ Push $R5
+ Call StrStr ; search for the next parameter
+ Pop $R4
+ StrCmp $R4 "" done
+ StrLen $R4 $R4
+ StrCpy $R0 $R0 -$R4 ; using the length of the string beyond the value,
+ ;copy only the value into $R0
+done:
+ Pop $R5
+ Pop $R4
+ Pop $R3
+ Pop $R2
+ Pop $R1
+ Exch $R0 ; put the value in $R0 at the top of the stack
+FunctionEnd
+
+Function StrStr
+ Exch $R1 ; st=haystack,old$R1, $R1=needle
+ Exch ; st=old$R1,haystack
+ Exch $R2 ; st=old$R1,old$R2, $R2=haystack
+ Push $R3
+ Push $R4
+ Push $R5
+ StrLen $R3 $R1
+ StrCpy $R4 0
+ ; $R1=needle
+ ; $R2=haystack
+ ; $R3=len(needle)
+ ; $R4=cnt
+ ; $R5=tmp
+ loop:
+ StrCpy $R5 $R2 $R3 $R4
+ StrCmp $R5 $R1 done
+ StrCmp $R5 "" done
+ IntOp $R4 $R4 + 1
+ Goto loop
+ done:
+ StrCpy $R1 $R2 "" $R4
+ Pop $R5
+ Pop $R4
+ Pop $R3
+ Pop $R2
+ Exch $R1
+FunctionEnd
+
+!endif
diff --git a/festc_dist/distfiles/config.properties b/festc_dist/distfiles/config.properties
index 219928d..52fe06f 100644
--- a/festc_dist/distfiles/config.properties
+++ b/festc_dist/distfiles/config.properties
@@ -1,13 +1,13 @@
-# This file should be put in $USER_HOME/festc/ subdirectory
-# Linux example settings
-
-work.dir=/nas01/depts/ie/cempd/EPIC/epic
-sa.home=/nas01/depts/ie/cempd/SA/sa_06_2009
-epic.home=/nas01/depts/ie/cempd/EPIC/epic
-visual.program.home=/usr/local/
-visual.program=verdi -f
-queue.cmd=bsub
-queue.option=-q week -oo
-queue.bigmem=-R mem96 -M 40
-debug=true
-allow.diff.check=true
+# This file should be put in $USER_HOME/festc/ subdirectory
+# Linux example settings
+
+work.dir=/nas01/depts/ie/cempd/EPIC/epic
+sa.home=/nas01/depts/ie/cempd/SA/sa_06_2009
+epic.home=/nas01/depts/ie/cempd/EPIC/epic
+visual.program.home=/usr/local/
+visual.program=verdi -f
+queue.cmd=bsub
+queue.option=-q week -oo
+queue.bigmem=-R mem96 -M 40
+debug=true
+allow.diff.check=true
diff --git a/festc_dist/distfiles/festc b/festc_dist/distfiles/festc
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/festc.ini b/festc_dist/distfiles/festc.ini
index 126c3ba..b431eee 100644
--- a/festc_dist/distfiles/festc.ini
+++ b/festc_dist/distfiles/festc.ini
@@ -1,2 +1,2 @@
-[boot]
-heapSize=1024M
+[boot]
+heapSize=1024M
diff --git a/festc_dist/distfiles/festc.nsi b/festc_dist/distfiles/festc.nsi
index ab47caa..8265023 100644
--- a/festc_dist/distfiles/festc.nsi
+++ b/festc_dist/distfiles/festc.nsi
@@ -1,202 +1,202 @@
-;--------------------------------
-; RepastSimphony.nsi
-;
-; This script builds the Repast Simphony installer/uninstaller
-; Created by Jerry Vos, Nick Collier
-; Adapted to FEST-C by IE, UNC
-; Last modified Oct 29, 2009
-;--------------------------------
-
-;--------------------------------
-; Header Files
-!include "MUI.nsh"
-
-
-;--------------------------------
-; Variables
-
-; Start menu dir var
-Var "ICONS_GROUP"
-
-
-;--------------------------------------------
-; File macros
-!define FILE_IGNORE_STRING "/x CVS /x .svn /x *.nsh /x *.res /x *.obj /x obj /x *.pch /x *.pdb /x debug /x *.ilk /x .cvsignore /x *.nsi /x distfiles /x distlib /x build_dist.xml /x config.properties"
-!define File "File ${FILE_IGNORE_STRING} "
-!define FileR "File /r ${FILE_IGNORE_STRING} "
-
-
-;--------------------------------
-; MUI Settings
-!define MUI_ABORTWARNING
-!define MUI_COMPONENTSPAGE_SMALLDESC
-
-; if this is defined as a picture, it will be the picture that shows up on the header of the installer
-;!define MUI_HEADERIMAGE
-
-; Other settings
-!define PRODUCT_NAME "FESTC"
-!define PRODUCT_VERSION "1.0"
-!define PRODUCT_PUBLISHER "US EPA"
-;!define PRODUCT_WEB_SITE "http://www.epa.gov"
-!define PRODUCT_DIR_REGKEY "Software\Microsoft\Windows\CurrentVersion\App Paths\FESTC"
-!define PRODUCT_UNINST_KEY "Software\Microsoft\Windows\CurrentVersion\Uninstall\${PRODUCT_NAME}"
-!define PRODUCT_UNINST_ROOT_KEY "HKLM"
-!define PRODUCT_STARTMENU_REGVAL "NSIS:StartMenuDir"
-!define USERHOME "$STARTMENU\..\festc"
-!define licensefile "licenses\festc_gpl-3.0.txt"
-
-
-;--------------------------------
-; Custom defines
-
-; This is the file that launches the main class. This is created through RepastSimphonyLauncher.nsi
-!define RS_LAUNCHER "FESTC.exe"
-; This is the location of the root of the sources. This is used to find what files to copy.
-!define SRCROOT ".\"
-
-
-;--------------------------------
-; Setup the installer info
-
-; The name of the installer
-Name "${PRODUCT_NAME} ${PRODUCT_VERSION}"
-
-
-; This is the installer executable file's name
-; File name has underscores only because sourceforge doesn't like spaces, can get rid of them if you don't want them
-OutFile "${PRODUCT_NAME}_${PRODUCT_VERSION}_Installer.exe"
-
-; The default installation directory
-InstallDir "$PROGRAMFILES\${PRODUCT_NAME}_${PRODUCT_VERSION}"
-
-
-; Registry key to check for directory (so if you install again, it will
-; overwrite the old one automatically)
-InstallDirRegKey HKLM "Software\${PRODUCT_NAME}" "Install_Dir"
-
-ShowInstDetails show
-ShowUnInstDetails show
-
-
-;--------------------------------
-; Installer pages
-
-!insertmacro MUI_PAGE_WELCOME
-
-; License page
-!ifdef licensefile
-LicenseText "FEST-C License"
-LicenseData "${SRCROOT}\${licensefile}"
-Page license
-!endif
-; End of license page
-
-;!insertmacro MUI_PAGE_COMPONENTS
-
-; Install directory selector
-!define MUI_DIRECTORYPAGE_TEXT_TOP "Please select the directory to install ${PRODUCT_NAME}."
-!define MUI_DIRECTORYPAGE_VARIABLE $INSTDIR
-!insertmacro MUI_PAGE_DIRECTORY
-
-; Start menu directory selector
-!define MUI_STARTMENUPAGE_NODISABLE
-!define MUI_STARTMENUPAGE_DEFAULTFOLDER "${PRODUCT_NAME}"
-!define MUI_STARTMENUPAGE_REGISTRY_ROOT "${PRODUCT_UNINST_ROOT_KEY}"
-!define MUI_STARTMENUPAGE_REGISTRY_KEY "${PRODUCT_UNINST_KEY}"
-!define MUI_STARTMENUPAGE_REGISTRY_VALUENAME "${PRODUCT_STARTMENU_REGVAL}"
-
-!insertmacro MUI_PAGE_STARTMENU "StartMenuPageID" $ICONS_GROUP
-
-; Install
-!insertmacro MUI_PAGE_INSTFILES
-
-!insertmacro MUI_LANGUAGE "English"
-
-;--------------------------------
-; Uninstaller pages
-
-!insertmacro MUI_UNPAGE_INSTFILES
-
-
-
-
-;--------------------------------
-; Install sections
-
-Section "All" SecAll
- SectionIn 1
-
- ; Copy default festc properties file
- CreateDirectory "${USERHOME}"
- SetOutPath "${USERHOME}"
- File "${SRCROOT}\config.properties"
-
- ; BEGIN FILE LISTING
- ; Just copy everything
- SetOutPath "$INSTDIR"
- ${FileR} "${SRCROOT}\*"
-
- ; the RS launcher
- ${File} "${RS_LAUNCHER}"
- ; END FILE LISTING
-
- CreateDirectory "$SMPROGRAMS\$ICONS_GROUP\"
- CreateShortCut "$SMPROGRAMS\$ICONS_GROUP\${PRODUCT_NAME}.lnk" "$INSTDIR\${RS_LAUNCHER}"
-SectionEnd
-
-
-Section -Post
- WriteUninstaller "$INSTDIR\Uninstall.exe"
-
- WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "DisplayName" "$(^Name)"
- WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "UninstallString" "$INSTDIR\uninst.exe"
- WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "DisplayVersion" "${PRODUCT_VERSION}"
- ;WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "URLInfoAbout" "${PRODUCT_WEB_SITE}"
- WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "Publisher" "${PRODUCT_PUBLISHER}"
-SectionEnd
-
-
-Section -AdditionalIcons
- !insertmacro MUI_STARTMENU_WRITE_BEGIN "StartMenuPageID"
- CreateDirectory "$SMPROGRAMS\$ICONS_GROUP\"
- !ifdef PRODUCT_WEB_SITE
- WriteIniStr "$SMPROGRAMS\$ICONS_GROUP\${PRODUCT_NAME} Website.url" "InternetShortcut" "URL" "${PRODUCT_WEB_SITE}"
- !endif
- CreateShortCut "$SMPROGRAMS\$ICONS_GROUP\Uninstall.lnk" "$INSTDIR\uninstall.exe"
- !insertmacro MUI_STARTMENU_WRITE_END
-SectionEnd
-
-
-;--------------------------------
-; Uninstall sections
-Section Uninstall
-
- !insertmacro MUI_STARTMENU_GETFOLDER "StartMenuPageID" $ICONS_GROUP
-
- Delete "$INSTDIR\uninstall.exe"
-
- RMDir /r "$SMPROGRAMS\$ICONS_GROUP"
-
- RMDir /r "$INSTDIR"
-
- DeleteRegKey ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}"
-; SetAutoClose true
-SectionEnd
-
-
-;--------------------------------
-; Functions
-
-;Function Initialize
-; StrCpy $INSTDIR "$PROGRAMFILES\${PRODUCT_NAME}"
-;FunctionEnd
-
-Function un.onUninstSuccess
- MessageBox MB_ICONINFORMATION|MB_OK "${PRODUCT_NAME} was successfully removed from your computer."
-FunctionEnd
-
-Function un.onInit
- MessageBox MB_ICONQUESTION|MB_YESNO|MB_DEFBUTTON2 "Are you sure you want to completely remove ${PRODUCT_NAME} and all of its components?" IDYES +2
- Abort
-FunctionEnd
+;--------------------------------
+; RepastSimphony.nsi
+;
+; This script builds the Repast Simphony installer/uninstaller
+; Created by Jerry Vos, Nick Collier
+; Adapted to FEST-C by IE, UNC
+; Last modified Oct 29, 2009
+;--------------------------------
+
+;--------------------------------
+; Header Files
+!include "MUI.nsh"
+
+
+;--------------------------------
+; Variables
+
+; Start menu dir var
+Var "ICONS_GROUP"
+
+
+;--------------------------------------------
+; File macros
+!define FILE_IGNORE_STRING "/x CVS /x .svn /x *.nsh /x *.res /x *.obj /x obj /x *.pch /x *.pdb /x debug /x *.ilk /x .cvsignore /x *.nsi /x distfiles /x distlib /x build_dist.xml /x config.properties"
+!define File "File ${FILE_IGNORE_STRING} "
+!define FileR "File /r ${FILE_IGNORE_STRING} "
+
+
+;--------------------------------
+; MUI Settings
+!define MUI_ABORTWARNING
+!define MUI_COMPONENTSPAGE_SMALLDESC
+
+; if this is defined as a picture, it will be the picture that shows up on the header of the installer
+;!define MUI_HEADERIMAGE
+
+; Other settings
+!define PRODUCT_NAME "FESTC"
+!define PRODUCT_VERSION "1.0"
+!define PRODUCT_PUBLISHER "US EPA"
+;!define PRODUCT_WEB_SITE "http://www.epa.gov"
+!define PRODUCT_DIR_REGKEY "Software\Microsoft\Windows\CurrentVersion\App Paths\FESTC"
+!define PRODUCT_UNINST_KEY "Software\Microsoft\Windows\CurrentVersion\Uninstall\${PRODUCT_NAME}"
+!define PRODUCT_UNINST_ROOT_KEY "HKLM"
+!define PRODUCT_STARTMENU_REGVAL "NSIS:StartMenuDir"
+!define USERHOME "$STARTMENU\..\festc"
+!define licensefile "licenses\festc_gpl-3.0.txt"
+
+
+;--------------------------------
+; Custom defines
+
+; This is the file that launches the main class. This is created through RepastSimphonyLauncher.nsi
+!define RS_LAUNCHER "FESTC.exe"
+; This is the location of the root of the sources. This is used to find what files to copy.
+!define SRCROOT ".\"
+
+
+;--------------------------------
+; Setup the installer info
+
+; The name of the installer
+Name "${PRODUCT_NAME} ${PRODUCT_VERSION}"
+
+
+; This is the installer executable file's name
+; File name has underscores only because sourceforge doesn't like spaces, can get rid of them if you don't want them
+OutFile "${PRODUCT_NAME}_${PRODUCT_VERSION}_Installer.exe"
+
+; The default installation directory
+InstallDir "$PROGRAMFILES\${PRODUCT_NAME}_${PRODUCT_VERSION}"
+
+
+; Registry key to check for directory (so if you install again, it will
+; overwrite the old one automatically)
+InstallDirRegKey HKLM "Software\${PRODUCT_NAME}" "Install_Dir"
+
+ShowInstDetails show
+ShowUnInstDetails show
+
+
+;--------------------------------
+; Installer pages
+
+!insertmacro MUI_PAGE_WELCOME
+
+; License page
+!ifdef licensefile
+LicenseText "FEST-C License"
+LicenseData "${SRCROOT}\${licensefile}"
+Page license
+!endif
+; End of license page
+
+;!insertmacro MUI_PAGE_COMPONENTS
+
+; Install directory selector
+!define MUI_DIRECTORYPAGE_TEXT_TOP "Please select the directory to install ${PRODUCT_NAME}."
+!define MUI_DIRECTORYPAGE_VARIABLE $INSTDIR
+!insertmacro MUI_PAGE_DIRECTORY
+
+; Start menu directory selector
+!define MUI_STARTMENUPAGE_NODISABLE
+!define MUI_STARTMENUPAGE_DEFAULTFOLDER "${PRODUCT_NAME}"
+!define MUI_STARTMENUPAGE_REGISTRY_ROOT "${PRODUCT_UNINST_ROOT_KEY}"
+!define MUI_STARTMENUPAGE_REGISTRY_KEY "${PRODUCT_UNINST_KEY}"
+!define MUI_STARTMENUPAGE_REGISTRY_VALUENAME "${PRODUCT_STARTMENU_REGVAL}"
+
+!insertmacro MUI_PAGE_STARTMENU "StartMenuPageID" $ICONS_GROUP
+
+; Install
+!insertmacro MUI_PAGE_INSTFILES
+
+!insertmacro MUI_LANGUAGE "English"
+
+;--------------------------------
+; Uninstaller pages
+
+!insertmacro MUI_UNPAGE_INSTFILES
+
+
+
+
+;--------------------------------
+; Install sections
+
+Section "All" SecAll
+ SectionIn 1
+
+ ; Copy default festc properties file
+ CreateDirectory "${USERHOME}"
+ SetOutPath "${USERHOME}"
+ File "${SRCROOT}\config.properties"
+
+ ; BEGIN FILE LISTING
+ ; Just copy everything
+ SetOutPath "$INSTDIR"
+ ${FileR} "${SRCROOT}\*"
+
+ ; the RS launcher
+ ${File} "${RS_LAUNCHER}"
+ ; END FILE LISTING
+
+ CreateDirectory "$SMPROGRAMS\$ICONS_GROUP\"
+ CreateShortCut "$SMPROGRAMS\$ICONS_GROUP\${PRODUCT_NAME}.lnk" "$INSTDIR\${RS_LAUNCHER}"
+SectionEnd
+
+
+Section -Post
+ WriteUninstaller "$INSTDIR\Uninstall.exe"
+
+ WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "DisplayName" "$(^Name)"
+ WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "UninstallString" "$INSTDIR\uninst.exe"
+ WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "DisplayVersion" "${PRODUCT_VERSION}"
+ ;WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "URLInfoAbout" "${PRODUCT_WEB_SITE}"
+ WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "Publisher" "${PRODUCT_PUBLISHER}"
+SectionEnd
+
+
+Section -AdditionalIcons
+ !insertmacro MUI_STARTMENU_WRITE_BEGIN "StartMenuPageID"
+ CreateDirectory "$SMPROGRAMS\$ICONS_GROUP\"
+ !ifdef PRODUCT_WEB_SITE
+ WriteIniStr "$SMPROGRAMS\$ICONS_GROUP\${PRODUCT_NAME} Website.url" "InternetShortcut" "URL" "${PRODUCT_WEB_SITE}"
+ !endif
+ CreateShortCut "$SMPROGRAMS\$ICONS_GROUP\Uninstall.lnk" "$INSTDIR\uninstall.exe"
+ !insertmacro MUI_STARTMENU_WRITE_END
+SectionEnd
+
+
+;--------------------------------
+; Uninstall sections
+Section Uninstall
+
+ !insertmacro MUI_STARTMENU_GETFOLDER "StartMenuPageID" $ICONS_GROUP
+
+ Delete "$INSTDIR\uninstall.exe"
+
+ RMDir /r "$SMPROGRAMS\$ICONS_GROUP"
+
+ RMDir /r "$INSTDIR"
+
+ DeleteRegKey ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}"
+; SetAutoClose true
+SectionEnd
+
+
+;--------------------------------
+; Functions
+
+;Function Initialize
+; StrCpy $INSTDIR "$PROGRAMFILES\${PRODUCT_NAME}"
+;FunctionEnd
+
+Function un.onUninstSuccess
+ MessageBox MB_ICONINFORMATION|MB_OK "${PRODUCT_NAME} was successfully removed from your computer."
+FunctionEnd
+
+Function un.onInit
+ MessageBox MB_ICONQUESTION|MB_YESNO|MB_DEFBUTTON2 "Are you sure you want to completely remove ${PRODUCT_NAME} and all of its components?" IDYES +2
+ Abort
+FunctionEnd
diff --git a/festc_dist/distfiles/festc.sh b/festc_dist/distfiles/festc.sh
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/ControlPanel b/festc_dist/distfiles/jre1.6.0_13_linux/bin/ControlPanel
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/java b/festc_dist/distfiles/jre1.6.0_13_linux/bin/java
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/java_vm b/festc_dist/distfiles/jre1.6.0_13_linux/bin/java_vm
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/javaws b/festc_dist/distfiles/jre1.6.0_13_linux/bin/javaws
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/jcontrol b/festc_dist/distfiles/jre1.6.0_13_linux/bin/jcontrol
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/keytool b/festc_dist/distfiles/jre1.6.0_13_linux/bin/keytool
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/orbd b/festc_dist/distfiles/jre1.6.0_13_linux/bin/orbd
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/pack200 b/festc_dist/distfiles/jre1.6.0_13_linux/bin/pack200
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/policytool b/festc_dist/distfiles/jre1.6.0_13_linux/bin/policytool
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/rmid b/festc_dist/distfiles/jre1.6.0_13_linux/bin/rmid
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/rmiregistry b/festc_dist/distfiles/jre1.6.0_13_linux/bin/rmiregistry
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/servertool b/festc_dist/distfiles/jre1.6.0_13_linux/bin/servertool
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/tnameserv b/festc_dist/distfiles/jre1.6.0_13_linux/bin/tnameserv
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/bin/unpack200 b/festc_dist/distfiles/jre1.6.0_13_linux/bin/unpack200
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/javaws/javaws b/festc_dist/distfiles/jre1.6.0_13_linux/javaws/javaws
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/deploy/messages_zh_HK.properties b/festc_dist/distfiles/jre1.6.0_13_linux/lib/deploy/messages_zh_HK.properties
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/deploy/splash.gif b/festc_dist/distfiles/jre1.6.0_13_linux/lib/deploy/splash.gif
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/desktop/mime/packages/x-java-archive.xml b/festc_dist/distfiles/jre1.6.0_13_linux/lib/desktop/mime/packages/x-java-archive.xml
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/desktop/mime/packages/x-java-jnlp-file.xml b/festc_dist/distfiles/jre1.6.0_13_linux/lib/desktop/mime/packages/x-java-jnlp-file.xml
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/client/libjsig.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/client/libjsig.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/client/libjvm.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/client/libjvm.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/headless/libmawt.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/headless/libmawt.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/jli/libjli.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/jli/libjli.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libJdbcOdbc.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libJdbcOdbc.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libawt.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libawt.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libcmm.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libcmm.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libdcpr.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libdcpr.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libdeploy.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libdeploy.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libdt_socket.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libdt_socket.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libfontmanager.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libfontmanager.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libhprof.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libhprof.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libinstrument.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libinstrument.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libioser12.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libioser12.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj2gss.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj2gss.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj2pcsc.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj2pcsc.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj2pkcs11.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj2pkcs11.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj3dcore-ogl-cg.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj3dcore-ogl-cg.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj3dcore-ogl.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libj3dcore-ogl.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjaas_unix.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjaas_unix.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjava.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjava.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjava_crw_demo.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjava_crw_demo.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjavaplugin_jni.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjavaplugin_jni.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjavaplugin_nscp.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjavaplugin_nscp.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjavaplugin_nscp_gcc29.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjavaplugin_nscp_gcc29.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjawt.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjawt.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjdwp.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjdwp.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjpeg.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjpeg.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjsig.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjsig.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjsound.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjsound.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjsoundalsa.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libjsoundalsa.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libmanagement.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libmanagement.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libmlib_image.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libmlib_image.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libnet.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libnet.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libnio.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libnio.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libnpjp2.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libnpjp2.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libnpt.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libnpt.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/librmi.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/librmi.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libsplashscreen.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libsplashscreen.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libunpack.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libunpack.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libverify.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libverify.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libzip.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/libzip.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/motif21/libmawt.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/motif21/libmawt.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/native_threads/libhpi.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/native_threads/libhpi.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/server/libjsig.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/server/libjsig.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/server/libjvm.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/server/libjvm.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/xawt/libmawt.so b/festc_dist/distfiles/jre1.6.0_13_linux/lib/i386/xawt/libmawt.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/lib/jexec b/festc_dist/distfiles/jre1.6.0_13_linux/lib/jexec
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/plugin/i386/ns7-gcc29/libjavaplugin_oji.so b/festc_dist/distfiles/jre1.6.0_13_linux/plugin/i386/ns7-gcc29/libjavaplugin_oji.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/jre1.6.0_13_linux/plugin/i386/ns7/libjavaplugin_oji.so b/festc_dist/distfiles/jre1.6.0_13_linux/plugin/i386/ns7/libjavaplugin_oji.so
old mode 100755
new mode 100644
diff --git a/festc_dist/distfiles/launcher.nsi b/festc_dist/distfiles/launcher.nsi
index d5e37d4..7b78b57 100644
--- a/festc_dist/distfiles/launcher.nsi
+++ b/festc_dist/distfiles/launcher.nsi
@@ -1,36 +1,36 @@
-!include "Functions.nsh"
-
-Name "Festc.exe"
-OutFile "FESTC.exe"
-
-Caption "FEST-C"
-
-SilentInstall silent
-AutoCloseWindow true
-ShowInstDetails nevershow
-
-!define CLASSPATH "./bootstrap.jar;./lib/saf.core.runtime.jar;./lib/commons-logging.jar;./lib/jpf-boot.jar;./lib/jpf.jar;./lib/log4j-1.2.13.jar"
-!define MAIN_CLASS "saf.core.runtime.Boot"
-
-Section ""
- #Call GetJRE
- #Pop $R0
-
- StrCmp $R1 "" 0 +2
- StrCpy $R1 "${MAIN_CLASS}"
-
- ReadINIStr $1 .\festc.ini boot heapSize
-
- StrCpy $0 '"..\..\jre1.6.0\bin\javaw" -Xmx$1 -classpath "${CLASSPATH}" $R1'
-
- ;MessageBox MB_OK $0
-
- ClearErrors
- SetOutPath ".\plugins\bootstrap"
-
- ExecWait $0
-
- IfErrors 0 done
- MessageBox MB_OK "Could not find the java run time"
- done:
-SectionEnd
+!include "Functions.nsh"
+
+Name "Festc.exe"
+OutFile "FESTC.exe"
+
+Caption "FEST-C"
+
+SilentInstall silent
+AutoCloseWindow true
+ShowInstDetails nevershow
+
+!define CLASSPATH "./bootstrap.jar;./lib/saf.core.runtime.jar;./lib/commons-logging.jar;./lib/jpf-boot.jar;./lib/jpf.jar;./lib/log4j-1.2.13.jar"
+!define MAIN_CLASS "saf.core.runtime.Boot"
+
+Section ""
+ #Call GetJRE
+ #Pop $R0
+
+ StrCmp $R1 "" 0 +2
+ StrCpy $R1 "${MAIN_CLASS}"
+
+ ReadINIStr $1 .\festc.ini boot heapSize
+
+ StrCpy $0 '"..\..\jre1.6.0\bin\javaw" -Xmx$1 -classpath "${CLASSPATH}" $R1'
+
+ ;MessageBox MB_OK $0
+
+ ClearErrors
+ SetOutPath ".\plugins\bootstrap"
+
+ ExecWait $0
+
+ IfErrors 0 done
+ MessageBox MB_OK "Could not find the java run time"
+ done:
+SectionEnd
diff --git a/festc_saf_core_runtime_temp/.classpath b/festc_saf_core_runtime_temp/.classpath
index 7efab8f..1fa99f0 100644
--- a/festc_saf_core_runtime_temp/.classpath
+++ b/festc_saf_core_runtime_temp/.classpath
@@ -1,13 +1,13 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/festc_saf_core_runtime_temp/.project b/festc_saf_core_runtime_temp/.project
index 9a179d4..61e5f42 100644
--- a/festc_saf_core_runtime_temp/.project
+++ b/festc_saf_core_runtime_temp/.project
@@ -1,17 +1,17 @@
-
-
- festc_saf_core_runtime_temp
-
-
-
-
-
- org.eclipse.jdt.core.javabuilder
-
-
-
-
-
- org.eclipse.jdt.core.javanature
-
-
+
+
+ festc_saf_core_runtime_temp
+
+
+
+
+
+ org.eclipse.jdt.core.javabuilder
+
+
+
+
+
+ org.eclipse.jdt.core.javanature
+
+
diff --git a/festc_saf_core_runtime_temp/.settings/org.eclipse.jdt.core.prefs b/festc_saf_core_runtime_temp/.settings/org.eclipse.jdt.core.prefs
index bb35fa0..3a21537 100644
--- a/festc_saf_core_runtime_temp/.settings/org.eclipse.jdt.core.prefs
+++ b/festc_saf_core_runtime_temp/.settings/org.eclipse.jdt.core.prefs
@@ -1,11 +1,11 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.debug.lineNumber=generate
-org.eclipse.jdt.core.compiler.debug.localVariable=generate
-org.eclipse.jdt.core.compiler.debug.sourceFile=generate
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.source=1.8
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
+org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
+org.eclipse.jdt.core.compiler.compliance=1.8
+org.eclipse.jdt.core.compiler.debug.lineNumber=generate
+org.eclipse.jdt.core.compiler.debug.localVariable=generate
+org.eclipse.jdt.core.compiler.debug.sourceFile=generate
+org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.source=1.8
diff --git a/festc_saf_core_runtime_temp/boot.properties b/festc_saf_core_runtime_temp/boot.properties
index 2c620cc..d522239 100644
--- a/festc_saf_core_runtime_temp/boot.properties
+++ b/festc_saf_core_runtime_temp/boot.properties
@@ -1,18 +1,18 @@
-# Comma separated list of folders with plug-ins
-# (plug-in repositories)
-pluginFolders = ../,./lib,../festc_bootstrap
-org.java.plugin.standard.PluginLifecycleHandler = gov.epa.festc.boot.FestcLifecycleHandler
-
-log4j.rootLogger=warn, console, R
-log4j.logger.org.java = warn
-
-log4j.appender.console = org.apache.log4j.ConsoleAppender
-log4j.appender.console.layout = org.apache.log4j.PatternLayout
-log4j.appender.console.layout.conversionPattern = %d [%t] %-5p %c %m%n
-
-log4j.appender.R=org.apache.log4j.RollingFileAppender
-log4j.appender.R.File=${user.home}/festc/festc.log
-log4j.appender.R.MaxFileSize=100KB
-log4j.appender.R.MaxBackupIndex=1
-log4j.appender.R.layout=org.apache.log4j.PatternLayout
-log4j.appender.R.layout.ConversionPattern=%d [%t] %-5p %c %m%n
+# Comma separated list of folders with plug-ins
+# (plug-in repositories)
+pluginFolders = ../,./lib,../festc_bootstrap
+org.java.plugin.standard.PluginLifecycleHandler = gov.epa.festc.boot.FestcLifecycleHandler
+
+log4j.rootLogger=warn, console, R
+log4j.logger.org.java = warn
+
+log4j.appender.console = org.apache.log4j.ConsoleAppender
+log4j.appender.console.layout = org.apache.log4j.PatternLayout
+log4j.appender.console.layout.conversionPattern = %d [%t] %-5p %c %m%n
+
+log4j.appender.R=org.apache.log4j.RollingFileAppender
+log4j.appender.R.File=${user.home}/festc/festc.log
+log4j.appender.R.MaxFileSize=100KB
+log4j.appender.R.MaxBackupIndex=1
+log4j.appender.R.layout=org.apache.log4j.PatternLayout
+log4j.appender.R.layout.ConversionPattern=%d [%t] %-5p %c %m%n
diff --git a/festc_saf_core_runtime_temp/lib/log4j-1.2-api-2.22.1.jar b/festc_saf_core_runtime_temp/lib/log4j-1.2-api-2.22.1.jar
new file mode 100644
index 0000000..de57f34
Binary files /dev/null and b/festc_saf_core_runtime_temp/lib/log4j-1.2-api-2.22.1.jar differ
diff --git a/festc_saf_core_runtime_temp/lib/log4j-api-2.22.1.jar b/festc_saf_core_runtime_temp/lib/log4j-api-2.22.1.jar
new file mode 100644
index 0000000..b77e55e
Binary files /dev/null and b/festc_saf_core_runtime_temp/lib/log4j-api-2.22.1.jar differ
diff --git a/festc_saf_core_runtime_temp/lib/log4j-core-2.22.1.jar b/festc_saf_core_runtime_temp/lib/log4j-core-2.22.1.jar
new file mode 100644
index 0000000..0be3f1f
Binary files /dev/null and b/festc_saf_core_runtime_temp/lib/log4j-core-2.22.1.jar differ
diff --git a/festc_saf_core_runtime_temp/plugin.xml b/festc_saf_core_runtime_temp/plugin.xml
index b746bc6..c104af9 100644
--- a/festc_saf_core_runtime_temp/plugin.xml
+++ b/festc_saf_core_runtime_temp/plugin.xml
@@ -1,57 +1,57 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/festc_saf_core_runtime_temp/src/saf/core/runtime/Boot.java b/festc_saf_core_runtime_temp/src/saf/core/runtime/Boot.java
index 182e2aa..3cbf111 100644
--- a/festc_saf_core_runtime_temp/src/saf/core/runtime/Boot.java
+++ b/festc_saf_core_runtime_temp/src/saf/core/runtime/Boot.java
@@ -1,337 +1,337 @@
-package saf.core.runtime;
-
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.IOException;
-import java.io.InputStream;
-import java.lang.reflect.InvocationTargetException;
-import java.lang.reflect.Method;
-import java.lang.reflect.Type;
-import java.net.URL;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Properties;
-import java.util.StringTokenizer;
-
-import javax.xml.parsers.ParserConfigurationException;
-
-import org.java.plugin.JpfException;
-import org.java.plugin.ObjectFactory;
-import org.java.plugin.Plugin;
-import org.java.plugin.PluginLifecycleException;
-import org.java.plugin.PluginManager;
-import org.java.plugin.PluginManager.PluginLocation;
-import org.java.plugin.boot.DefaultPluginsCollector;
-import org.java.plugin.registry.Identity;
-import org.java.plugin.registry.IntegrityCheckReport;
-import org.java.plugin.registry.PluginDescriptor;
-import org.java.plugin.util.ExtendedProperties;
-import org.xml.sax.SAXException;
-
-import simphony.util.messages.MessageCenter;
-
-/**
- * Boots the plugin infrastructure.
- *
- * @author Nick Collier
- * @version $Revision: 1.11 $ $Date: 2006/06/01 16:31:11 $
- */
-public class Boot {
-
- private static final String PLUGIN_FOLDER_PROP = "pluginFolders";
- private static final String PLUGIN_DESCRIPTOR_PROP = "plugin.descriptors";
- private static String RUNTIME_DIR_ROOT = "../festc_bootstrap";
- private static String PLUGIN_RESTRICT_PREFIX = "plugin.restrict.";
-
- private static final String CORE_PLUGIN_ID = "saf.core.runtime";
- private MessageCenter center = MessageCenter.getMessageCenter(Boot.class);
-
- public Boot()
- {
- // 2014 created default constructor
- }
-
- public PluginManager init(String[] args) {
-
- // load properties
- if (args.length > 1)
- {
- // RUNTIME_DIR_ROOT = args[1];
- }
- System.setProperty("applicationRoot", RUNTIME_DIR_ROOT);
- center = MessageCenter.getMessageCenter(Boot.class);
- try {
- Properties props = new Properties();
- File file = new File(RUNTIME_DIR_ROOT, "boot.properties");
- InputStream strm;
- //System.out.println("file: " + file.exists() +System.getProperty("user.dir"));
- if (file.exists()) {
- strm = new FileInputStream(file);
- } else {
- // try as resource
- strm = getClass().getClassLoader().getResourceAsStream("boot.properties");
- //System.out.println("file: " + strm);
- }
- try {
- props.load(strm);
- } finally {
- strm.close();
- }
-
- // Publish current folder as configuration parameter
- // to get it available as ${applicationRoot} variable
- // when extended properties are supported
- // 2014 NOTE: the following 2 lines appear to do the same thing
- props.put("applicationRoot", new File(".").getCanonicalPath());
- // props.put("applicationRoot", RUNTIME_DIR_ROOT);
-
- return initializePluginManager(findPluginLocations(props), props);
-
- } catch (Exception ex) {
- center.error(ex.getMessage(), ex);
- }
- return null;
- }
-
- private void run(PluginManager pluginManager, String[] args) {
- Plugin corePlugin;
- try {
-
-// Plugin corePlugin = pluginManager.getPlugin(CORE_PLUGIN_ID); // 2014 NOTE: Javadoc for this function states "Note that this method will never return null."
-// if (corePlugin == null) {
-// throw new Exception("Cannot find core plugin");}
- pluginManager.activatePlugin(CORE_PLUGIN_ID);
- corePlugin = pluginManager.getPlugin(CORE_PLUGIN_ID);
- }
- catch (PluginLifecycleException pEx)
- {
- center.error(pEx.getMessage(), pEx);
- return;
- }
- catch (IllegalArgumentException iaEx)
- {
- center.error(iaEx.getMessage(), iaEx);
- return;
- }
- catch (Exception ex)
- {
- center.error(ex.getMessage(), ex);
- return;
- }
- try{
-
-// corePlugin.getClass().getMethod("run", String[].class).invoke(corePlugin, (Object) args);
- // 2014 breaking up above statement; 1st get name of class at run-time for predetermined instantiated object
- Class pClass = corePlugin.getClass();
-// Method[] someMethods = pClass.getDeclaredMethods();
-// System.out.println("Now try to list the methods");
-// for (Method aMethod : someMethods)
-// {
-// String methodName = aMethod.getName();
-// System.out.println("method name = " + methodName + " and its parameter types:");
-// Type[] someTypes = aMethod.getGenericParameterTypes();
-// for (Type aType : someTypes)
-// {
-// String myTypeString = aType.toString();
-// System.out.println("\t" + myTypeString);
-// }
-// }
- // 2nd get name of method at run-time that belongs to class
- Method aMethod = pClass.getMethod((String) "run", String[].class);
- // 3rd invoke actual method of that class on an object
- aMethod.invoke(corePlugin, new java.lang.Object[] {args});
-
- } catch (InvocationTargetException itEx)
- {
- System.out.println("caught an InvocationTargetException in Boot.run; printing .getCause()");
- center.error(itEx.getCause(), itEx);
- }
- catch (Exception ex) {
- System.out.println("Caught an Exception in Boot.java");
- center.error(ex.getMessage(), ex);
- }
- }
-
- private PluginManager initializePluginManager(Collection locations, Properties props)
- throws JpfException, IOException, ParserConfigurationException, SAXException {
-
-// PluginManager pluginManager = ObjectFactory.newInstance(new ExtendedProperties(props)).createManager();
-// ObjectFactory fac = ObjectFactory.newInstance(new ExtendedProperties(props));
-// PluginManager pluginManager = fac.createManager();
- ExtendedProperties extProperties = new ExtendedProperties(props); // 2014
- ObjectFactory objFactory = ObjectFactory.newInstance(extProperties);
- PluginManager pluginManager = objFactory.createManager();
-
- List validLocations = new ArrayList();
-
- List restrictions = new ArrayList();
- for (Object key : props.keySet()) {
- if (key.toString().startsWith(PLUGIN_RESTRICT_PREFIX)) {
- String strKey = key.toString();
- String restrictId = strKey.substring(strKey.lastIndexOf(".") + 1, strKey.length());
- String restrictVal = props.getProperty(strKey);
- restrictions.add(new Restriction(restrictId, restrictVal));
- }
- }
-
- if (restrictions.size() > 0) {
- for (Iterator iter = locations.iterator(); iter.hasNext();)
- {
- PluginLocation location = (PluginLocation) iter.next();
- PluginReader reader = new PluginReader(location.getManifestLocation());
- PluginAttributes pluginAttribs = reader.parse();
-
- boolean pass = true;
- for (Restriction restriction : restrictions) {
- if (!restriction.pass(pluginAttribs)) {
- pass = false;
- break;
- }
- }
-
- if (pass) {
- validLocations.add(location);
- }
- }
-
- } else {
-// validLocations.addAll(locations); // 2014 CHANGE TO ITERATE locations & ADD ONLY THOSE NOT ALREADY IN validLocations
- for (Iterator anIterator = locations.iterator(); anIterator.hasNext();)
- {
- PluginLocation aLocation = (PluginLocation)anIterator.next();
- if(!validLocations.contains(aLocation) )
- {
- // that location not already in validLocations, so add it
- validLocations.add(aLocation);
- }
- }
- }
-PluginLocation[] myLocations = validLocations.toArray(new PluginManager.PluginLocation[validLocations.size()]);
-//for(int i=0; i map = pluginManager.publishPlugins(myLocations);
-// Map map = pluginManager.publishPlugins((PluginManager.PluginLocation[]) validLocations //.toArray());
-// .toArray(new PluginManager.PluginLocation[validLocations.size()])); // 2014
- // Check plug-in's integrity
- IntegrityCheckReport integrityCheckReport = pluginManager.getRegistry().checkIntegrity(
- pluginManager.getPathResolver(), true);
-// if (integrityCheckReport.countErrors() > 0) { // 2014 had been != 0
-// // something wrong with the plugin set
-// center.fatal(integrityCheckReport2str(integrityCheckReport), new RuntimeException("Invalid plugin configuration"));
-// System.exit(1);
-// }
-
- for (Iterator iter = map.values().iterator(); iter.hasNext();) {
- Identity id = (Identity) iter.next();
- PluginDescriptor desc = pluginManager.getRegistry().getPluginDescriptor(id.getId());
- pluginManager.getPluginClassLoader(desc);
- }
- return pluginManager;
- }
-
- private String integrityCheckReport2str(IntegrityCheckReport report) {
- StringBuffer buf = new StringBuffer();
-
- for (Iterator it = report.getItems().iterator(); it.hasNext();) {
- IntegrityCheckReport.ReportItem item = (IntegrityCheckReport.ReportItem) it.next();
-// if (item.getSeverity() != IntegrityCheckReport.Severity.ERROR) //ReportItem.SEVERITY_ERROR) {
-// {
-// continue;
-// }
-// buf.append(item.getMessage());
-// buf.append("\n\n\n");
- }
-
- buf.append("full integrity check report:\r\n");
- buf.append("-------------- REPORT BEGIN -----------------\r\n");
- for (Iterator it = report.getItems().iterator(); it.hasNext();) {
- IntegrityCheckReport.ReportItem item = (IntegrityCheckReport.ReportItem) it.next();
- buf.append("\tseverity=").append(item.getSeverity()).append("; code=").append(item.getCode())
- .append("; message=").append(item.getMessage()).append("; source=")
- .append(item.getSource()).append("\r\n");
- }
- buf.append("-------------- REPORT END -----------------");
- return buf.toString();
- }
-
- private Collection findPluginLocations(Properties props) throws Exception {
- DefaultPluginsCollector collector = new DefaultPluginsCollector();
- ExtendedProperties eprops = new ExtendedProperties(props);
-
- if (props.containsKey(PLUGIN_DESCRIPTOR_PROP)) {
- // treat is as the jpf xml file that holds plugin locations
- eprops.put("org.java.plugin.boot.pluginsLocationsDescriptors",
- props.getProperty(PLUGIN_DESCRIPTOR_PROP));
- } else {
- String pluginFolder = RUNTIME_DIR_ROOT + props.getProperty(PLUGIN_FOLDER_PROP);
- eprops.put("org.java.plugin.boot.pluginsRepositories", pluginFolder);
- }
- collector.configure(eprops);
- Collection locations = collector.collectPluginLocations();
-
- String exclude = props.getProperty("pluginFolders.exclude", "");
- StringTokenizer tok = new StringTokenizer(exclude, ",");
- List urls = new ArrayList();
- while (tok.hasMoreTokens()) {
- String loc = tok.nextToken().trim();
- try {
- URL url = new File(loc).getCanonicalFile().toURI().toURL();
- urls.add(url);
- } catch (IOException ex) {
- center.warn("Error finding directory to exclude from plugin search", ex);
- }
- }
-
- if (urls.size() > 0) {
- for (Iterator iter = locations.iterator(); iter.hasNext();) {
- PluginManager.PluginLocation loc = (PluginManager.PluginLocation) iter.next();
- for (URL url : urls) {
- if (loc.getContextLocation().toExternalForm().startsWith(url.toExternalForm()))
- iter.remove();
- }
- }
- }
-
- return locations;
- }
-
- public static void main(String[] args) {
- Boot boot = new Boot();
-
- PluginManager manager = boot.init(args);
- if(manager == null)
- {
- System.out.println(" boot.init returned null. Ending with exit(1)");
- System.exit(1);
- }
- boot.run(manager, args);
- }
-
- private static class Restriction {
-
- private String id;
- private String val;
-
- private Restriction(String id, String val) {
- this.id = id;
- this.val = val;
- }
-
- private boolean pass(PluginAttributes pAttribs) {
-
- SimpleAttribute attrib = pAttribs.getAttribute(id);
- if (attrib == null)
- return false;
-
- return attrib.getValue().equals(val);
- }
- }
-}
+package saf.core.runtime;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.lang.reflect.InvocationTargetException;
+import java.lang.reflect.Method;
+import java.lang.reflect.Type;
+import java.net.URL;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.Iterator;
+import java.util.List;
+import java.util.Map;
+import java.util.Properties;
+import java.util.StringTokenizer;
+
+import javax.xml.parsers.ParserConfigurationException;
+
+import org.java.plugin.JpfException;
+import org.java.plugin.ObjectFactory;
+import org.java.plugin.Plugin;
+import org.java.plugin.PluginLifecycleException;
+import org.java.plugin.PluginManager;
+import org.java.plugin.PluginManager.PluginLocation;
+import org.java.plugin.boot.DefaultPluginsCollector;
+import org.java.plugin.registry.Identity;
+import org.java.plugin.registry.IntegrityCheckReport;
+import org.java.plugin.registry.PluginDescriptor;
+import org.java.plugin.util.ExtendedProperties;
+import org.xml.sax.SAXException;
+
+import simphony.util.messages.MessageCenter;
+
+/**
+ * Boots the plugin infrastructure.
+ *
+ * @author Nick Collier
+ * @version $Revision: 1.11 $ $Date: 2006/06/01 16:31:11 $
+ */
+public class Boot {
+
+ private static final String PLUGIN_FOLDER_PROP = "pluginFolders";
+ private static final String PLUGIN_DESCRIPTOR_PROP = "plugin.descriptors";
+ private static String RUNTIME_DIR_ROOT = "../festc_bootstrap";
+ private static String PLUGIN_RESTRICT_PREFIX = "plugin.restrict.";
+
+ private static final String CORE_PLUGIN_ID = "saf.core.runtime";
+ private MessageCenter center = MessageCenter.getMessageCenter(Boot.class);
+
+ public Boot()
+ {
+ // 2014 created default constructor
+ }
+
+ public PluginManager init(String[] args) {
+
+ // load properties
+ if (args.length > 1)
+ {
+ // RUNTIME_DIR_ROOT = args[1];
+ }
+ System.setProperty("applicationRoot", RUNTIME_DIR_ROOT);
+ center = MessageCenter.getMessageCenter(Boot.class);
+ try {
+ Properties props = new Properties();
+ File file = new File(RUNTIME_DIR_ROOT, "boot.properties");
+ InputStream strm;
+ //System.out.println("file: " + file.exists() +System.getProperty("user.dir"));
+ if (file.exists()) {
+ strm = new FileInputStream(file);
+ } else {
+ // try as resource
+ strm = getClass().getClassLoader().getResourceAsStream("boot.properties");
+ //System.out.println("file: " + strm);
+ }
+ try {
+ props.load(strm);
+ } finally {
+ strm.close();
+ }
+
+ // Publish current folder as configuration parameter
+ // to get it available as ${applicationRoot} variable
+ // when extended properties are supported
+ // 2014 NOTE: the following 2 lines appear to do the same thing
+ props.put("applicationRoot", new File(".").getCanonicalPath());
+ // props.put("applicationRoot", RUNTIME_DIR_ROOT);
+
+ return initializePluginManager(findPluginLocations(props), props);
+
+ } catch (Exception ex) {
+ center.error(ex.getMessage(), ex);
+ }
+ return null;
+ }
+
+ private void run(PluginManager pluginManager, String[] args) {
+ Plugin corePlugin;
+ try {
+
+// Plugin corePlugin = pluginManager.getPlugin(CORE_PLUGIN_ID); // 2014 NOTE: Javadoc for this function states "Note that this method will never return null."
+// if (corePlugin == null) {
+// throw new Exception("Cannot find core plugin");}
+ pluginManager.activatePlugin(CORE_PLUGIN_ID);
+ corePlugin = pluginManager.getPlugin(CORE_PLUGIN_ID);
+ }
+ catch (PluginLifecycleException pEx)
+ {
+ center.error(pEx.getMessage(), pEx);
+ return;
+ }
+ catch (IllegalArgumentException iaEx)
+ {
+ center.error(iaEx.getMessage(), iaEx);
+ return;
+ }
+ catch (Exception ex)
+ {
+ center.error(ex.getMessage(), ex);
+ return;
+ }
+ try{
+
+// corePlugin.getClass().getMethod("run", String[].class).invoke(corePlugin, (Object) args);
+ // 2014 breaking up above statement; 1st get name of class at run-time for predetermined instantiated object
+ Class pClass = corePlugin.getClass();
+// Method[] someMethods = pClass.getDeclaredMethods();
+// System.out.println("Now try to list the methods");
+// for (Method aMethod : someMethods)
+// {
+// String methodName = aMethod.getName();
+// System.out.println("method name = " + methodName + " and its parameter types:");
+// Type[] someTypes = aMethod.getGenericParameterTypes();
+// for (Type aType : someTypes)
+// {
+// String myTypeString = aType.toString();
+// System.out.println("\t" + myTypeString);
+// }
+// }
+ // 2nd get name of method at run-time that belongs to class
+ Method aMethod = pClass.getMethod((String) "run", String[].class);
+ // 3rd invoke actual method of that class on an object
+ aMethod.invoke(corePlugin, new java.lang.Object[] {args});
+
+ } catch (InvocationTargetException itEx)
+ {
+ System.out.println("caught an InvocationTargetException in Boot.run; printing .getCause()");
+ center.error(itEx.getCause(), itEx);
+ }
+ catch (Exception ex) {
+ System.out.println("Caught an Exception in Boot.java");
+ center.error(ex.getMessage(), ex);
+ }
+ }
+
+ private PluginManager initializePluginManager(Collection locations, Properties props)
+ throws JpfException, IOException, ParserConfigurationException, SAXException {
+
+// PluginManager pluginManager = ObjectFactory.newInstance(new ExtendedProperties(props)).createManager();
+// ObjectFactory fac = ObjectFactory.newInstance(new ExtendedProperties(props));
+// PluginManager pluginManager = fac.createManager();
+ ExtendedProperties extProperties = new ExtendedProperties(props); // 2014
+ ObjectFactory objFactory = ObjectFactory.newInstance(extProperties);
+ PluginManager pluginManager = objFactory.createManager();
+
+ List validLocations = new ArrayList();
+
+ List restrictions = new ArrayList();
+ for (Object key : props.keySet()) {
+ if (key.toString().startsWith(PLUGIN_RESTRICT_PREFIX)) {
+ String strKey = key.toString();
+ String restrictId = strKey.substring(strKey.lastIndexOf(".") + 1, strKey.length());
+ String restrictVal = props.getProperty(strKey);
+ restrictions.add(new Restriction(restrictId, restrictVal));
+ }
+ }
+
+ if (restrictions.size() > 0) {
+ for (Iterator iter = locations.iterator(); iter.hasNext();)
+ {
+ PluginLocation location = (PluginLocation) iter.next();
+ PluginReader reader = new PluginReader(location.getManifestLocation());
+ PluginAttributes pluginAttribs = reader.parse();
+
+ boolean pass = true;
+ for (Restriction restriction : restrictions) {
+ if (!restriction.pass(pluginAttribs)) {
+ pass = false;
+ break;
+ }
+ }
+
+ if (pass) {
+ validLocations.add(location);
+ }
+ }
+
+ } else {
+// validLocations.addAll(locations); // 2014 CHANGE TO ITERATE locations & ADD ONLY THOSE NOT ALREADY IN validLocations
+ for (Iterator anIterator = locations.iterator(); anIterator.hasNext();)
+ {
+ PluginLocation aLocation = (PluginLocation)anIterator.next();
+ if(!validLocations.contains(aLocation) )
+ {
+ // that location not already in validLocations, so add it
+ validLocations.add(aLocation);
+ }
+ }
+ }
+PluginLocation[] myLocations = validLocations.toArray(new PluginManager.PluginLocation[validLocations.size()]);
+//for(int i=0; i map = pluginManager.publishPlugins(myLocations);
+// Map map = pluginManager.publishPlugins((PluginManager.PluginLocation[]) validLocations //.toArray());
+// .toArray(new PluginManager.PluginLocation[validLocations.size()])); // 2014
+ // Check plug-in's integrity
+ IntegrityCheckReport integrityCheckReport = pluginManager.getRegistry().checkIntegrity(
+ pluginManager.getPathResolver(), true);
+// if (integrityCheckReport.countErrors() > 0) { // 2014 had been != 0
+// // something wrong with the plugin set
+// center.fatal(integrityCheckReport2str(integrityCheckReport), new RuntimeException("Invalid plugin configuration"));
+// System.exit(1);
+// }
+
+ for (Iterator iter = map.values().iterator(); iter.hasNext();) {
+ Identity id = (Identity) iter.next();
+ PluginDescriptor desc = pluginManager.getRegistry().getPluginDescriptor(id.getId());
+ pluginManager.getPluginClassLoader(desc);
+ }
+ return pluginManager;
+ }
+
+ private String integrityCheckReport2str(IntegrityCheckReport report) {
+ StringBuffer buf = new StringBuffer();
+
+ for (Iterator it = report.getItems().iterator(); it.hasNext();) {
+ IntegrityCheckReport.ReportItem item = (IntegrityCheckReport.ReportItem) it.next();
+// if (item.getSeverity() != IntegrityCheckReport.Severity.ERROR) //ReportItem.SEVERITY_ERROR) {
+// {
+// continue;
+// }
+// buf.append(item.getMessage());
+// buf.append("\n\n\n");
+ }
+
+ buf.append("full integrity check report:\r\n");
+ buf.append("-------------- REPORT BEGIN -----------------\r\n");
+ for (Iterator it = report.getItems().iterator(); it.hasNext();) {
+ IntegrityCheckReport.ReportItem item = (IntegrityCheckReport.ReportItem) it.next();
+ buf.append("\tseverity=").append(item.getSeverity()).append("; code=").append(item.getCode())
+ .append("; message=").append(item.getMessage()).append("; source=")
+ .append(item.getSource()).append("\r\n");
+ }
+ buf.append("-------------- REPORT END -----------------");
+ return buf.toString();
+ }
+
+ private Collection findPluginLocations(Properties props) throws Exception {
+ DefaultPluginsCollector collector = new DefaultPluginsCollector();
+ ExtendedProperties eprops = new ExtendedProperties(props);
+
+ if (props.containsKey(PLUGIN_DESCRIPTOR_PROP)) {
+ // treat is as the jpf xml file that holds plugin locations
+ eprops.put("org.java.plugin.boot.pluginsLocationsDescriptors",
+ props.getProperty(PLUGIN_DESCRIPTOR_PROP));
+ } else {
+ String pluginFolder = RUNTIME_DIR_ROOT + props.getProperty(PLUGIN_FOLDER_PROP);
+ eprops.put("org.java.plugin.boot.pluginsRepositories", pluginFolder);
+ }
+ collector.configure(eprops);
+ Collection locations = collector.collectPluginLocations();
+
+ String exclude = props.getProperty("pluginFolders.exclude", "");
+ StringTokenizer tok = new StringTokenizer(exclude, ",");
+ List urls = new ArrayList();
+ while (tok.hasMoreTokens()) {
+ String loc = tok.nextToken().trim();
+ try {
+ URL url = new File(loc).getCanonicalFile().toURI().toURL();
+ urls.add(url);
+ } catch (IOException ex) {
+ center.warn("Error finding directory to exclude from plugin search", ex);
+ }
+ }
+
+ if (urls.size() > 0) {
+ for (Iterator iter = locations.iterator(); iter.hasNext();) {
+ PluginManager.PluginLocation loc = (PluginManager.PluginLocation) iter.next();
+ for (URL url : urls) {
+ if (loc.getContextLocation().toExternalForm().startsWith(url.toExternalForm()))
+ iter.remove();
+ }
+ }
+ }
+
+ return locations;
+ }
+
+ public static void main(String[] args) {
+ Boot boot = new Boot();
+
+ PluginManager manager = boot.init(args);
+ if(manager == null)
+ {
+ System.out.println(" boot.init returned null. Ending with exit(1)");
+ System.exit(1);
+ }
+ boot.run(manager, args);
+ }
+
+ private static class Restriction {
+
+ private String id;
+ private String val;
+
+ private Restriction(String id, String val) {
+ this.id = id;
+ this.val = val;
+ }
+
+ private boolean pass(PluginAttributes pAttribs) {
+
+ SimpleAttribute attrib = pAttribs.getAttribute(id);
+ if (attrib == null)
+ return false;
+
+ return attrib.getValue().equals(val);
+ }
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/saf/core/runtime/CorePlugin.java b/festc_saf_core_runtime_temp/src/saf/core/runtime/CorePlugin.java
index 53fbdef..f3e0ef9 100644
--- a/festc_saf_core_runtime_temp/src/saf/core/runtime/CorePlugin.java
+++ b/festc_saf_core_runtime_temp/src/saf/core/runtime/CorePlugin.java
@@ -1,86 +1,86 @@
-package saf.core.runtime;
-
-import java.lang.reflect.InvocationTargetException;
-import java.lang.reflect.Method;
-
-import org.java.plugin.Plugin;
-import org.java.plugin.PluginLifecycleException;
-import org.java.plugin.registry.Extension;
-import org.java.plugin.registry.ExtensionPoint;
-
-import simphony.util.messages.MessageCenter;
-
-/**
- * @author Nick Collier
- * @version $Revision: 1.6 $ $Date: 2006/02/07 20:39:51 $
- */
-public class CorePlugin extends Plugin {
-
- private static final String APP_RUN_ID = "IApplicationRunnable";
- private IApplicationRunnable appRunner;
-
- protected void doStart() throws Exception {
-
- }
-
- protected void doStop() throws Exception {
-
- }
-
-
- public void run(String[] args) {
- try {
- loadAppPlugin();
- loadUIPlugin(args); // added args
- runApplicationRunnable(args);
- } catch (Exception ex) {
- MessageCenter.getMessageCenter(getClass()).error("Error instantiating plugins", ex);
- }
- }
-
- private void loadUIPlugin(String[] args) throws PluginLifecycleException, NoSuchMethodException,
- IllegalAccessException, InvocationTargetException // added args
- {
- try{
- Plugin plugin = getManager().getPlugin("saf.core.ui");
- // plugin.getClass().getMethod("initialize", new Class[]{}).invoke(plugin); // 2014
- Class aClass = plugin.getClass();
- Method aMethod = aClass.getMethod((String) "initialize", new Class[]{});
-
- aMethod.invoke(plugin);
-
- } catch(InvocationTargetException itEx)
- {
- System.err.println("caught an InvocationTargetException in CorePlugin.loadUIPlugin; printing .getCause()");
- System.err.print(itEx.getCause());
- }
- catch(Exception ex) {
- System.err.println("Caught an Exception in CorePlugin.java");
- System.err.print(ex.getCause());
- System.err.println();
- }
- }
-
- private void loadAppPlugin() throws PluginLifecycleException, ClassNotFoundException,
- IllegalAccessException, InstantiationException, PluginDefinitionException {
- ExtensionPoint extPoint = getManager().getRegistry().getExtensionPoint(getDescriptor().getId(), APP_RUN_ID);
- //System.out.println("number of IApplicationRunnable: " + extPoint.getConnectedExtensions().size());
- if (extPoint.getConnectedExtensions().size() != 1) {
- throw new PluginDefinitionException("Plugin must implement one and only one IApplicationRunnable");
- }
- Extension ext = (Extension) extPoint.getConnectedExtensions().iterator().next();
- Plugin plugin = getManager().getPlugin(ext.getDeclaringPluginDescriptor().getId());
- Class pluginCls = plugin.getClass();
- Class appRunnerClass = pluginCls.getClassLoader().loadClass(ext.getParameter("class").valueAsString());
- if (pluginCls.equals(appRunnerClass)) {
- appRunner = (IApplicationRunnable) plugin;
- } else {
- appRunner = (IApplicationRunnable) appRunnerClass.newInstance();
- }
- }
-
- private void runApplicationRunnable(String[] args) {
- appRunner.run(args);
- }
-}
-
+package saf.core.runtime;
+
+import java.lang.reflect.InvocationTargetException;
+import java.lang.reflect.Method;
+
+import org.java.plugin.Plugin;
+import org.java.plugin.PluginLifecycleException;
+import org.java.plugin.registry.Extension;
+import org.java.plugin.registry.ExtensionPoint;
+
+import simphony.util.messages.MessageCenter;
+
+/**
+ * @author Nick Collier
+ * @version $Revision: 1.6 $ $Date: 2006/02/07 20:39:51 $
+ */
+public class CorePlugin extends Plugin {
+
+ private static final String APP_RUN_ID = "IApplicationRunnable";
+ private IApplicationRunnable appRunner;
+
+ protected void doStart() throws Exception {
+
+ }
+
+ protected void doStop() throws Exception {
+
+ }
+
+
+ public void run(String[] args) {
+ try {
+ loadAppPlugin();
+ loadUIPlugin(args); // added args
+ runApplicationRunnable(args);
+ } catch (Exception ex) {
+ MessageCenter.getMessageCenter(getClass()).error("Error instantiating plugins", ex);
+ }
+ }
+
+ private void loadUIPlugin(String[] args) throws PluginLifecycleException, NoSuchMethodException,
+ IllegalAccessException, InvocationTargetException // added args
+ {
+ try{
+ Plugin plugin = getManager().getPlugin("saf.core.ui");
+ // plugin.getClass().getMethod("initialize", new Class[]{}).invoke(plugin); // 2014
+ Class aClass = plugin.getClass();
+ Method aMethod = aClass.getMethod((String) "initialize", new Class[]{});
+
+ aMethod.invoke(plugin);
+
+ } catch(InvocationTargetException itEx)
+ {
+ System.err.println("caught an InvocationTargetException in CorePlugin.loadUIPlugin; printing .getCause()");
+ System.err.print(itEx.getCause());
+ }
+ catch(Exception ex) {
+ System.err.println("Caught an Exception in CorePlugin.java");
+ System.err.print(ex.getCause());
+ System.err.println();
+ }
+ }
+
+ private void loadAppPlugin() throws PluginLifecycleException, ClassNotFoundException,
+ IllegalAccessException, InstantiationException, PluginDefinitionException {
+ ExtensionPoint extPoint = getManager().getRegistry().getExtensionPoint(getDescriptor().getId(), APP_RUN_ID);
+ //System.out.println("number of IApplicationRunnable: " + extPoint.getConnectedExtensions().size());
+ if (extPoint.getConnectedExtensions().size() != 1) {
+ throw new PluginDefinitionException("Plugin must implement one and only one IApplicationRunnable");
+ }
+ Extension ext = (Extension) extPoint.getConnectedExtensions().iterator().next();
+ Plugin plugin = getManager().getPlugin(ext.getDeclaringPluginDescriptor().getId());
+ Class pluginCls = plugin.getClass();
+ Class appRunnerClass = pluginCls.getClassLoader().loadClass(ext.getParameter("class").valueAsString());
+ if (pluginCls.equals(appRunnerClass)) {
+ appRunner = (IApplicationRunnable) plugin;
+ } else {
+ appRunner = (IApplicationRunnable) appRunnerClass.newInstance();
+ }
+ }
+
+ private void runApplicationRunnable(String[] args) {
+ appRunner.run(args);
+ }
+}
+
diff --git a/festc_saf_core_runtime_temp/src/saf/core/runtime/IApplicationRunnable.java b/festc_saf_core_runtime_temp/src/saf/core/runtime/IApplicationRunnable.java
index 84b7f68..b68a3dd 100644
--- a/festc_saf_core_runtime_temp/src/saf/core/runtime/IApplicationRunnable.java
+++ b/festc_saf_core_runtime_temp/src/saf/core/runtime/IApplicationRunnable.java
@@ -1,21 +1,21 @@
-package saf.core.runtime;
-
-/**
- * Interface for the application entry point. Boot will
- * attempt to find a plugin class that implements this interface
- * and then will call the run method.
- *
- * @author Nick Collier
- * @version $Revision: 1.3 $ $Date: 2006/02/07 20:39:51 $
- */
-public interface IApplicationRunnable {
-
- /**
- * Runs the application. This is the equivalent of
- * main(String[] args).
- *
- * @param args the arguments to the application
- */
- public void run(String[] args);
-
-}
+package saf.core.runtime;
+
+/**
+ * Interface for the application entry point. Boot will
+ * attempt to find a plugin class that implements this interface
+ * and then will call the run method.
+ *
+ * @author Nick Collier
+ * @version $Revision: 1.3 $ $Date: 2006/02/07 20:39:51 $
+ */
+public interface IApplicationRunnable {
+
+ /**
+ * Runs the application. This is the equivalent of
+ * main(String[] args).
+ *
+ * @param args the arguments to the application
+ */
+ public void run(String[] args);
+
+}
diff --git a/festc_saf_core_runtime_temp/src/saf/core/runtime/PluginDefinitionException.java b/festc_saf_core_runtime_temp/src/saf/core/runtime/PluginDefinitionException.java
index 8d8c2a7..baf2595 100644
--- a/festc_saf_core_runtime_temp/src/saf/core/runtime/PluginDefinitionException.java
+++ b/festc_saf_core_runtime_temp/src/saf/core/runtime/PluginDefinitionException.java
@@ -1,24 +1,24 @@
-package saf.core.runtime;
-
-/**
- * @author Nick Collier
- * @version $Revision: 1.2 $ $Date: 2005/11/21 18:55:38 $
- */
-public class PluginDefinitionException extends Exception {
-
- public PluginDefinitionException() {
- super();
- }
-
- public PluginDefinitionException(String message) {
- super(message);
- }
-
- public PluginDefinitionException(String message, Throwable cause) {
- super(message, cause);
- }
-
- public PluginDefinitionException(Throwable cause) {
- super(cause);
- }
-}
+package saf.core.runtime;
+
+/**
+ * @author Nick Collier
+ * @version $Revision: 1.2 $ $Date: 2005/11/21 18:55:38 $
+ */
+public class PluginDefinitionException extends Exception {
+
+ public PluginDefinitionException() {
+ super();
+ }
+
+ public PluginDefinitionException(String message) {
+ super(message);
+ }
+
+ public PluginDefinitionException(String message, Throwable cause) {
+ super(message, cause);
+ }
+
+ public PluginDefinitionException(Throwable cause) {
+ super(cause);
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/saf/core/runtime/package-info.java b/festc_saf_core_runtime_temp/src/saf/core/runtime/package-info.java
index 1ffea8a..9202f20 100644
--- a/festc_saf_core_runtime_temp/src/saf/core/runtime/package-info.java
+++ b/festc_saf_core_runtime_temp/src/saf/core/runtime/package-info.java
@@ -1,8 +1,8 @@
-/**
- *
- */
-/**
- * @author Dongmei Yang
- *
- */
+/**
+ *
+ */
+/**
+ * @author Dongmei Yang
+ *
+ */
package saf.core.runtime;
\ No newline at end of file
diff --git a/festc_saf_core_runtime_temp/src/simphony/settings/SettingsIO.java b/festc_saf_core_runtime_temp/src/simphony/settings/SettingsIO.java
index 0021a20..32db76b 100644
--- a/festc_saf_core_runtime_temp/src/simphony/settings/SettingsIO.java
+++ b/festc_saf_core_runtime_temp/src/simphony/settings/SettingsIO.java
@@ -1,90 +1,90 @@
-/*CopyrightHere*/
-package simphony.settings;
-
-import java.io.File;
-import java.io.FileNotFoundException;
-import java.io.FileReader;
-import java.io.FileWriter;
-import java.io.IOException;
-
-import com.thoughtworks.xstream.XStream;
-import com.thoughtworks.xstream.io.xml.DomDriver;
-
-/**
- * This handles IO operations on {@link simphony.settings.SettingsRegistry}s. It does not handle
- * converting between different implementations of {@link simphony.settings.SettingsRegistry}s, so
- * you cannot serialize one implementation and read it in with a different implementation.
- *
- * @author Jerry Vos
- */
-public class SettingsIO {
- public static final String SETTINGS_FILE_NAME = "SettingsFileName";
-
- public static boolean USE_DOM_DRIVER = false;
-
- private static XStream getXStream() {
- if (USE_DOM_DRIVER) {
- return new XStream(new DomDriver());
- }
- return new XStream();
- }
-
- /**
- * This loads from the specified file a {@link SettingsRegistry}. If the file does not exist
- * this will return a new {@link SettingsRegistry} with the given id, otherwise it will load one
- * from the specified file and set its id to be the specified id.
- *
- * If the registry has already been loaded this will return the previously loaded one. As with
- * the store methods, this will not attempt to reload the next registry in the chain.
- *
- * @param registryId
- * the id for the registry
- * @param fileName
- * the name of the file that the registry may be loaded from
- * @return a registry with the specified id
- */
- public static SettingsRegistry loadSettings(String registryId, String fileName) {
- XStream xstream = getXStream();
-
- SettingsRegistry registry = null;
- File settingsFile = new File(fileName);
- if (!settingsFile.exists()) {
- registry = new SettingsRegistry(registryId);
- } else {
- try {
- registry = (SettingsRegistry) xstream.fromXML(new FileReader(fileName));
- } catch (FileNotFoundException ex) {
- registry = new SettingsRegistry(registryId);
- }
-
-
- registry.setRegistryId(registryId);
- registry.put(SETTINGS_FILE_NAME, fileName);
- }
-
- return registry;
- }
-
- /**
- * Stores the specified registry to the specified file.
- *
- * This will not store the pointer to the next registry, nor will it store the next
- * registry itself.
- *
- * @param registry
- * the registry to store
- * @param fileName
- * the name of the file to store the registry to
- * @throws IOException
- */
- public static void storeSettings(SettingsRegistry registry, String fileName)
- throws IOException {
- XStream xstream = getXStream();
-
- SettingsRegistry nextRegistry = registry.getNext();
-
- xstream.toXML(registry, new FileWriter(fileName));
-
- registry.setNext(nextRegistry);
- }
-}
+/*CopyrightHere*/
+package simphony.settings;
+
+import java.io.File;
+import java.io.FileNotFoundException;
+import java.io.FileReader;
+import java.io.FileWriter;
+import java.io.IOException;
+
+import com.thoughtworks.xstream.XStream;
+import com.thoughtworks.xstream.io.xml.DomDriver;
+
+/**
+ * This handles IO operations on {@link simphony.settings.SettingsRegistry}s. It does not handle
+ * converting between different implementations of {@link simphony.settings.SettingsRegistry}s, so
+ * you cannot serialize one implementation and read it in with a different implementation.
+ *
+ * @author Jerry Vos
+ */
+public class SettingsIO {
+ public static final String SETTINGS_FILE_NAME = "SettingsFileName";
+
+ public static boolean USE_DOM_DRIVER = false;
+
+ private static XStream getXStream() {
+ if (USE_DOM_DRIVER) {
+ return new XStream(new DomDriver());
+ }
+ return new XStream();
+ }
+
+ /**
+ * This loads from the specified file a {@link SettingsRegistry}. If the file does not exist
+ * this will return a new {@link SettingsRegistry} with the given id, otherwise it will load one
+ * from the specified file and set its id to be the specified id.
+ *
+ * If the registry has already been loaded this will return the previously loaded one. As with
+ * the store methods, this will not attempt to reload the next registry in the chain.
+ *
+ * @param registryId
+ * the id for the registry
+ * @param fileName
+ * the name of the file that the registry may be loaded from
+ * @return a registry with the specified id
+ */
+ public static SettingsRegistry loadSettings(String registryId, String fileName) {
+ XStream xstream = getXStream();
+
+ SettingsRegistry registry = null;
+ File settingsFile = new File(fileName);
+ if (!settingsFile.exists()) {
+ registry = new SettingsRegistry(registryId);
+ } else {
+ try {
+ registry = (SettingsRegistry) xstream.fromXML(new FileReader(fileName));
+ } catch (FileNotFoundException ex) {
+ registry = new SettingsRegistry(registryId);
+ }
+
+
+ registry.setRegistryId(registryId);
+ registry.put(SETTINGS_FILE_NAME, fileName);
+ }
+
+ return registry;
+ }
+
+ /**
+ * Stores the specified registry to the specified file.
+ *
+ * This will not store the pointer to the next registry, nor will it store the next
+ * registry itself.
+ *
+ * @param registry
+ * the registry to store
+ * @param fileName
+ * the name of the file to store the registry to
+ * @throws IOException
+ */
+ public static void storeSettings(SettingsRegistry registry, String fileName)
+ throws IOException {
+ XStream xstream = getXStream();
+
+ SettingsRegistry nextRegistry = registry.getNext();
+
+ xstream.toXML(registry, new FileWriter(fileName));
+
+ registry.setNext(nextRegistry);
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/settings/SettingsRegistry.java b/festc_saf_core_runtime_temp/src/simphony/settings/SettingsRegistry.java
index 5f93d80..67b6b5b 100644
--- a/festc_saf_core_runtime_temp/src/simphony/settings/SettingsRegistry.java
+++ b/festc_saf_core_runtime_temp/src/simphony/settings/SettingsRegistry.java
@@ -1,221 +1,221 @@
-/*CopyrightHere*/
-package simphony.settings;
-
-import java.util.HashMap;
-import java.util.Hashtable;
-import java.util.Map;
-
-/**
- * This is a simple class for storing settings for an application. This is at heart just a chain of
- * {@link java.util.Map}s with an id assosciated to them. This stores that id in itself through the
- * key {@link #REGISTRY_ID_KEY}.
- *
- * @author Jerry Vos
- */
-public class SettingsRegistry extends Hashtable {
- /**
- * The key the registry id is stored under
- */
- public static final String REGISTRY_ID_KEY = "SettingsRegistryId";
-
- private static final long serialVersionUID = 1315247041894184896L;
-
- private static final Map registryMap = new HashMap();
-
- private SettingsRegistry next;
-
- /**
- * Constructs this registry with the specified key.
- *
- * @see #putHere(String, Object) used for storing the registry id
- *
- * @param registryId
- * the registry's id
- */
- public SettingsRegistry(String registryId) {
- if (registryId != null) {
- putHere(REGISTRY_ID_KEY, registryId);
- }
- }
-
- /**
- * Sets this registry's id. This is the same as put(REGISTRY_ID_KEY, registryId).
- *
- * @see #putHere(String, Object)
- *
- * @param registryId
- * the id for this registry
- */
- public synchronized void setRegistryId(String registryId) {
- putHere(REGISTRY_ID_KEY, registryId);
- }
-
- /**
- * Retrieves this registry's id. This is the same as get(REGISTRY_ID_KEY).
- *
- * @return the id for this registry
- */
- public synchronized String getRegistryId() {
- return super.get(REGISTRY_ID_KEY).toString();
- }
-
- /**
- * This will try to find a value for the specified key in this registry, and if it cannot it
- * will attempt to find one in the next registry (which also will attempt to check in itself and
- * then the next, ...).
- *
- * @param key
- * the key to search for a value for
- * @return the value for the given key in the registry chain starting at this registry and
- * onwards
- */
- @Override
- public synchronized Object get(Object key) {
- Object superResult = super.get(key);
- if (superResult != null) {
- return superResult;
- }
-
- if (next != null) {
- return next.get(key);
- }
- return null;
- }
-
- /**
- * This attempts to find a registry with the given key already stored in it. If it cannot find
- * one it will add the key and value to itself. If it can find one with the specified key it
- * will set that value on that registry.
- *
- * @see #putHere(String, Object)
- * @see #getNext()
- *
- * @param key
- * the key to store the value under
- * @param value
- * the value to store
- * @return the last value stored for the given key
- */
- @Override
- public synchronized Object put(String key, Object value) {
- // first see if we can find a registry with the specified key
- SettingsRegistry regWithKey = findRegistryWithKey(key);
- if (regWithKey != null) {
- return regWithKey.putHere(key, value);
- } else {
- // couldn't find one so add it to ourselves
- return putHere(key, value);
- }
-
- }
-
- /**
- * Stores the given value into this registry. This is like {@link #put(String, Object)}, except
- * it will not attempt to find a registry with the specified key.
- *
- * @param key
- * the key to store
- * @param value
- * the value to store it under
- * @return
- */
- public synchronized Object putHere(String key, Object value) {
- return super.put(key, value);
- }
-
- protected SettingsRegistry findRegistryWithKey(String key) {
- // if this registry has the key, return itself
- if (super.get(key) != null) {
- return this;
- }
-
- // now attempt to see if down the chain something has this key
- if (next == null) {
- return null;
- }
- SettingsRegistry regWithKey = next.findRegistryWithKey(key);
- if (regWithKey != null) {
- return regWithKey;
- }
-
- // nothing had the key
- return null;
- }
-
- /**
- * Retrieves the next registry in the chain (the one after this one).
- *
- * @return the next registry
- */
- public synchronized SettingsRegistry getNext() {
- return next;
- }
-
- /**
- * Sets the next registry in the settings chain.
- *
- * @param next
- * the next registry
- */
- public synchronized void setNext(SettingsRegistry next) {
- this.next = next;
- }
-
- /**
- * Retrives a static registry with the specified key. If another settings registry has been
- * created with the specified id (using this method) that registry will be returned. If no
- * registry has been created with the specified id, this will attempt to read one in using the
- * specified file name. If reading the file name fails then a new SettingsRegistry will be
- * created and returned.
- *
- * @see SettingsIO#loadSettings(String, String)
- *
- * @param registryId
- * the id of the registry
- * @param fileName
- * the name of the settings file+
- * @return a SettingsRegistry
- */
- public static SettingsRegistry getRegistry(String registryId, String fileName) {
- SettingsRegistry registry = registryMap.get(registryId);
- if (registry != null) {
- return registry;
- }
-
- try {
- registry = SettingsIO.loadSettings(registryId, fileName);
- } catch (Exception ex) {
- registry = new SettingsRegistry(registryId);
- }
- return register(registry);
- }
-
- /**
- * Retrives a static registry with the specified key. If no registry has
- * been created or registered with the specified id, this will return null.
- *
- * @see SettingsRegistry#getRegistry(String)
- * @see SettingsRegistry#register(SettingsRegistry)
- *
- * @param registryId
- * the id of the registry
- * @return a SettingsRegistry
- */
- public static SettingsRegistry getRegistry(String registryId) {
- return registryMap.get(registryId);
- }
-
- /**
- * Registers a SettingsRegistry using its id from its {@link #getRegistryId()}. This will
- * be returned from calls to {@link SettingsRegistry#getRegistry(String, String)} with
- * the registry's id.
- *
- * @param registry the registry to register
- *
- * @return the passed in registry
- */
- public static SettingsRegistry register(SettingsRegistry registry) {
- registryMap.put(registry.getRegistryId(), registry);
- return registry;
- }
-}
+/*CopyrightHere*/
+package simphony.settings;
+
+import java.util.HashMap;
+import java.util.Hashtable;
+import java.util.Map;
+
+/**
+ * This is a simple class for storing settings for an application. This is at heart just a chain of
+ * {@link java.util.Map}s with an id assosciated to them. This stores that id in itself through the
+ * key {@link #REGISTRY_ID_KEY}.
+ *
+ * @author Jerry Vos
+ */
+public class SettingsRegistry extends Hashtable {
+ /**
+ * The key the registry id is stored under
+ */
+ public static final String REGISTRY_ID_KEY = "SettingsRegistryId";
+
+ private static final long serialVersionUID = 1315247041894184896L;
+
+ private static final Map registryMap = new HashMap();
+
+ private SettingsRegistry next;
+
+ /**
+ * Constructs this registry with the specified key.
+ *
+ * @see #putHere(String, Object) used for storing the registry id
+ *
+ * @param registryId
+ * the registry's id
+ */
+ public SettingsRegistry(String registryId) {
+ if (registryId != null) {
+ putHere(REGISTRY_ID_KEY, registryId);
+ }
+ }
+
+ /**
+ * Sets this registry's id. This is the same as put(REGISTRY_ID_KEY, registryId).
+ *
+ * @see #putHere(String, Object)
+ *
+ * @param registryId
+ * the id for this registry
+ */
+ public synchronized void setRegistryId(String registryId) {
+ putHere(REGISTRY_ID_KEY, registryId);
+ }
+
+ /**
+ * Retrieves this registry's id. This is the same as get(REGISTRY_ID_KEY).
+ *
+ * @return the id for this registry
+ */
+ public synchronized String getRegistryId() {
+ return super.get(REGISTRY_ID_KEY).toString();
+ }
+
+ /**
+ * This will try to find a value for the specified key in this registry, and if it cannot it
+ * will attempt to find one in the next registry (which also will attempt to check in itself and
+ * then the next, ...).
+ *
+ * @param key
+ * the key to search for a value for
+ * @return the value for the given key in the registry chain starting at this registry and
+ * onwards
+ */
+ @Override
+ public synchronized Object get(Object key) {
+ Object superResult = super.get(key);
+ if (superResult != null) {
+ return superResult;
+ }
+
+ if (next != null) {
+ return next.get(key);
+ }
+ return null;
+ }
+
+ /**
+ * This attempts to find a registry with the given key already stored in it. If it cannot find
+ * one it will add the key and value to itself. If it can find one with the specified key it
+ * will set that value on that registry.
+ *
+ * @see #putHere(String, Object)
+ * @see #getNext()
+ *
+ * @param key
+ * the key to store the value under
+ * @param value
+ * the value to store
+ * @return the last value stored for the given key
+ */
+ @Override
+ public synchronized Object put(String key, Object value) {
+ // first see if we can find a registry with the specified key
+ SettingsRegistry regWithKey = findRegistryWithKey(key);
+ if (regWithKey != null) {
+ return regWithKey.putHere(key, value);
+ } else {
+ // couldn't find one so add it to ourselves
+ return putHere(key, value);
+ }
+
+ }
+
+ /**
+ * Stores the given value into this registry. This is like {@link #put(String, Object)}, except
+ * it will not attempt to find a registry with the specified key.
+ *
+ * @param key
+ * the key to store
+ * @param value
+ * the value to store it under
+ * @return
+ */
+ public synchronized Object putHere(String key, Object value) {
+ return super.put(key, value);
+ }
+
+ protected SettingsRegistry findRegistryWithKey(String key) {
+ // if this registry has the key, return itself
+ if (super.get(key) != null) {
+ return this;
+ }
+
+ // now attempt to see if down the chain something has this key
+ if (next == null) {
+ return null;
+ }
+ SettingsRegistry regWithKey = next.findRegistryWithKey(key);
+ if (regWithKey != null) {
+ return regWithKey;
+ }
+
+ // nothing had the key
+ return null;
+ }
+
+ /**
+ * Retrieves the next registry in the chain (the one after this one).
+ *
+ * @return the next registry
+ */
+ public synchronized SettingsRegistry getNext() {
+ return next;
+ }
+
+ /**
+ * Sets the next registry in the settings chain.
+ *
+ * @param next
+ * the next registry
+ */
+ public synchronized void setNext(SettingsRegistry next) {
+ this.next = next;
+ }
+
+ /**
+ * Retrives a static registry with the specified key. If another settings registry has been
+ * created with the specified id (using this method) that registry will be returned. If no
+ * registry has been created with the specified id, this will attempt to read one in using the
+ * specified file name. If reading the file name fails then a new SettingsRegistry will be
+ * created and returned.
+ *
+ * @see SettingsIO#loadSettings(String, String)
+ *
+ * @param registryId
+ * the id of the registry
+ * @param fileName
+ * the name of the settings file+
+ * @return a SettingsRegistry
+ */
+ public static SettingsRegistry getRegistry(String registryId, String fileName) {
+ SettingsRegistry registry = registryMap.get(registryId);
+ if (registry != null) {
+ return registry;
+ }
+
+ try {
+ registry = SettingsIO.loadSettings(registryId, fileName);
+ } catch (Exception ex) {
+ registry = new SettingsRegistry(registryId);
+ }
+ return register(registry);
+ }
+
+ /**
+ * Retrives a static registry with the specified key. If no registry has
+ * been created or registered with the specified id, this will return null.
+ *
+ * @see SettingsRegistry#getRegistry(String)
+ * @see SettingsRegistry#register(SettingsRegistry)
+ *
+ * @param registryId
+ * the id of the registry
+ * @return a SettingsRegistry
+ */
+ public static SettingsRegistry getRegistry(String registryId) {
+ return registryMap.get(registryId);
+ }
+
+ /**
+ * Registers a SettingsRegistry using its id from its {@link #getRegistryId()}. This will
+ * be returned from calls to {@link SettingsRegistry#getRegistry(String, String)} with
+ * the registry's id.
+ *
+ * @param registry the registry to register
+ *
+ * @return the passed in registry
+ */
+ public static SettingsRegistry register(SettingsRegistry registry) {
+ registryMap.put(registry.getRegistryId(), registry);
+ return registry;
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/ThreadUtilities.java b/festc_saf_core_runtime_temp/src/simphony/util/ThreadUtilities.java
index d71d35e..f8bc767 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/ThreadUtilities.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/ThreadUtilities.java
@@ -1,91 +1,91 @@
-package simphony.util;
-
-import simphony.util.messages.MessageCenter;
-
-import java.awt.*;
-import java.lang.reflect.InvocationTargetException;
-import java.util.concurrent.locks.Lock;
-import java.util.concurrent.locks.ReentrantLock;
-
-/**
- * Thread related utility methods.
- *
- * @author Nick Collier
- * @version $Revision: 1.1.2.3 $ $Date: 2007/03/14 20:28:06 $
- */
-public class ThreadUtilities {
-
- private static Lock rieLock = new ReentrantLock();
- private static Lock riewLock = new ReentrantLock();
-
- private static class Runner {
-
- private Runnable runnable;
- private Lock lock;
-
- private Runner(Lock lock, Runnable runnable) {
- this.lock = lock;
- this.runnable = runnable;
- }
-
- public void run() {
- lock.unlock();
- runnable.run();
- }
- }
-
- /**
- * Runs the specified runnable in the swing event thread. If the
- * current thread is the event thread then this is run immediately,
- * otherwise it is run via EventQueue.invokeLater
- *
- * @param runnable the runnable to run
- */
- public static void runInEventThread(Runnable runnable) {
- rieLock.lock();
- if (EventQueue.isDispatchThread()) {
- new Runner(rieLock, runnable).run();
- } else {
- EventQueue.invokeLater(runnable);
- rieLock.unlock();
- }
- }
-
- /**
- * Posts the specified runnable to the event queue and returns. The
- * runnable will run in the event queue when its turn is reached.
- *
- * @param runnable the runnable to run in the event queue
- */
- public synchronized static void runLaterInEventThread(Runnable runnable) {
- EventQueue.invokeLater(runnable);
- }
-
-
- /**
- * Runs the specified runnable in the swing event thread and wait
- * for it to finish executing. If the
- * current thread is the event thread then this is run immediately,
- * otherwise it is run via EventQueue.invokeAndWaity
- *
- * @param runnable the runnable to run
- */
- public static void runInEventThreadAndWait(Runnable runnable) {
- try {
- riewLock.lock();
- if (EventQueue.isDispatchThread()) {
- new Runner(riewLock, runnable).run();
- } else {
- EventQueue.invokeAndWait(runnable);
- riewLock.unlock();
- }
- } catch (InvocationTargetException e) {
- riewLock.unlock();
- MessageCenter.getMessageCenter(ThreadUtilities.class).error("Error in invokeAndWait", e);
- } catch (InterruptedException e) {
- riewLock.unlock();
- MessageCenter.getMessageCenter(ThreadUtilities.class).error("Error in invokeAndWait", e);
- }
- }
-}
-
+package simphony.util;
+
+import simphony.util.messages.MessageCenter;
+
+import java.awt.*;
+import java.lang.reflect.InvocationTargetException;
+import java.util.concurrent.locks.Lock;
+import java.util.concurrent.locks.ReentrantLock;
+
+/**
+ * Thread related utility methods.
+ *
+ * @author Nick Collier
+ * @version $Revision: 1.1.2.3 $ $Date: 2007/03/14 20:28:06 $
+ */
+public class ThreadUtilities {
+
+ private static Lock rieLock = new ReentrantLock();
+ private static Lock riewLock = new ReentrantLock();
+
+ private static class Runner {
+
+ private Runnable runnable;
+ private Lock lock;
+
+ private Runner(Lock lock, Runnable runnable) {
+ this.lock = lock;
+ this.runnable = runnable;
+ }
+
+ public void run() {
+ lock.unlock();
+ runnable.run();
+ }
+ }
+
+ /**
+ * Runs the specified runnable in the swing event thread. If the
+ * current thread is the event thread then this is run immediately,
+ * otherwise it is run via EventQueue.invokeLater
+ *
+ * @param runnable the runnable to run
+ */
+ public static void runInEventThread(Runnable runnable) {
+ rieLock.lock();
+ if (EventQueue.isDispatchThread()) {
+ new Runner(rieLock, runnable).run();
+ } else {
+ EventQueue.invokeLater(runnable);
+ rieLock.unlock();
+ }
+ }
+
+ /**
+ * Posts the specified runnable to the event queue and returns. The
+ * runnable will run in the event queue when its turn is reached.
+ *
+ * @param runnable the runnable to run in the event queue
+ */
+ public synchronized static void runLaterInEventThread(Runnable runnable) {
+ EventQueue.invokeLater(runnable);
+ }
+
+
+ /**
+ * Runs the specified runnable in the swing event thread and wait
+ * for it to finish executing. If the
+ * current thread is the event thread then this is run immediately,
+ * otherwise it is run via EventQueue.invokeAndWaity
+ *
+ * @param runnable the runnable to run
+ */
+ public static void runInEventThreadAndWait(Runnable runnable) {
+ try {
+ riewLock.lock();
+ if (EventQueue.isDispatchThread()) {
+ new Runner(riewLock, runnable).run();
+ } else {
+ EventQueue.invokeAndWait(runnable);
+ riewLock.unlock();
+ }
+ } catch (InvocationTargetException e) {
+ riewLock.unlock();
+ MessageCenter.getMessageCenter(ThreadUtilities.class).error("Error in invokeAndWait", e);
+ } catch (InterruptedException e) {
+ riewLock.unlock();
+ MessageCenter.getMessageCenter(ThreadUtilities.class).error("Error in invokeAndWait", e);
+ }
+ }
+}
+
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorCenter.java b/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorCenter.java
index 66bb8b5..60ab684 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorCenter.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorCenter.java
@@ -1,117 +1,117 @@
-/*CopyrightHere*/
-package simphony.util.error;
-
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Collections;
-import java.util.List;
-
-/**
- * @author Jerry Vos
- * @version $Revision: 1.5 $ $Date: 2005/11/14 21:58:40 $
- */
-public class ErrorCenter {
- // TODO: decide about the static business
- private static List errorHandlers = new ArrayList();
-
- /**
- * Gets an ErrorCenter.
- *
- * @return
- */
- public static ErrorCenter getErrorCenter() {
- return new ErrorCenter();
- }
-
- private ErrorCenter() {
- }
-
- /**
- * Fires an error event with the specified error information.
- *
- * @param errorCode
- * a code for the error
- * @param info
- * information on the error
- * @param error
- * an error object (useful for getting a stack trace)
- * @param metaData
- * extra meta data about the erro
- * @return if the error was handled or not by one of the ErrorHandlers
- */
- public boolean error(int errorCode, Object info, Throwable error,
- Object... metaData) {
- return fireErrorEvent(errorCode, info, error, metaData);
- }
-
- /**
- * Fires an error event with the specified error information.
- *
- * @param errorCode
- * a code for the error
- * @param info
- * information on the error
- * @param error
- * an error object (useful for getting a stack trace)
- * @param metaData
- * extra meta data about the erro
- * @return if the error was handled or not by one of the ErrorHandlers
- */
- public boolean fireErrorEvent(int errorCode, Object info, Throwable error,
- Object... metaData) {
-
- ErrorEvent event = new ErrorEvent(error, errorCode, info, metaData);
-
- boolean handled = false;
- synchronized (errorHandlers) {
- for (ErrorHandler listener : errorHandlers) {
- if (listener.handleError(event)) {
- handled = true;
- }
- }
- }
-
- if (!handled) {
- if (error instanceof RuntimeException) {
- throw (RuntimeException) error;
- } else {
- throw new RuntimeException(error);
- }
- }
-
- return handled;
- }
-
- /**
- * Adds an ErrorHandler.
- *
- * @param handler
- * the ErrorHandler to add
- */
- public void addErrorHandler(ErrorHandler handler) {
- synchronized (errorHandlers) {
- errorHandlers.add(handler);
- }
- }
-
- /**
- * Removes an ErrorHandler.
- *
- * @param handler
- * the ErrorHandler to remove
- */
- public void removeErrorHandler(ErrorHandler handler) {
- synchronized (errorHandlers) {
- errorHandlers.remove(handler);
- }
- }
-
- /**
- * Retrieves the ErrorHandlers this ErrorCenter contains.
- *
- * @return the ErrorHandlers this ErrorCenter contains
- */
- public Collection getErrorHandlers() {
- return Collections.unmodifiableCollection(errorHandlers);
- }
-}
+/*CopyrightHere*/
+package simphony.util.error;
+
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.Collections;
+import java.util.List;
+
+/**
+ * @author Jerry Vos
+ * @version $Revision: 1.5 $ $Date: 2005/11/14 21:58:40 $
+ */
+public class ErrorCenter {
+ // TODO: decide about the static business
+ private static List errorHandlers = new ArrayList();
+
+ /**
+ * Gets an ErrorCenter.
+ *
+ * @return
+ */
+ public static ErrorCenter getErrorCenter() {
+ return new ErrorCenter();
+ }
+
+ private ErrorCenter() {
+ }
+
+ /**
+ * Fires an error event with the specified error information.
+ *
+ * @param errorCode
+ * a code for the error
+ * @param info
+ * information on the error
+ * @param error
+ * an error object (useful for getting a stack trace)
+ * @param metaData
+ * extra meta data about the erro
+ * @return if the error was handled or not by one of the ErrorHandlers
+ */
+ public boolean error(int errorCode, Object info, Throwable error,
+ Object... metaData) {
+ return fireErrorEvent(errorCode, info, error, metaData);
+ }
+
+ /**
+ * Fires an error event with the specified error information.
+ *
+ * @param errorCode
+ * a code for the error
+ * @param info
+ * information on the error
+ * @param error
+ * an error object (useful for getting a stack trace)
+ * @param metaData
+ * extra meta data about the erro
+ * @return if the error was handled or not by one of the ErrorHandlers
+ */
+ public boolean fireErrorEvent(int errorCode, Object info, Throwable error,
+ Object... metaData) {
+
+ ErrorEvent event = new ErrorEvent(error, errorCode, info, metaData);
+
+ boolean handled = false;
+ synchronized (errorHandlers) {
+ for (ErrorHandler listener : errorHandlers) {
+ if (listener.handleError(event)) {
+ handled = true;
+ }
+ }
+ }
+
+ if (!handled) {
+ if (error instanceof RuntimeException) {
+ throw (RuntimeException) error;
+ } else {
+ throw new RuntimeException(error);
+ }
+ }
+
+ return handled;
+ }
+
+ /**
+ * Adds an ErrorHandler.
+ *
+ * @param handler
+ * the ErrorHandler to add
+ */
+ public void addErrorHandler(ErrorHandler handler) {
+ synchronized (errorHandlers) {
+ errorHandlers.add(handler);
+ }
+ }
+
+ /**
+ * Removes an ErrorHandler.
+ *
+ * @param handler
+ * the ErrorHandler to remove
+ */
+ public void removeErrorHandler(ErrorHandler handler) {
+ synchronized (errorHandlers) {
+ errorHandlers.remove(handler);
+ }
+ }
+
+ /**
+ * Retrieves the ErrorHandlers this ErrorCenter contains.
+ *
+ * @return the ErrorHandlers this ErrorCenter contains
+ */
+ public Collection getErrorHandlers() {
+ return Collections.unmodifiableCollection(errorHandlers);
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorEvent.java b/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorEvent.java
index f1c93a9..362dd92 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorEvent.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorEvent.java
@@ -1,44 +1,44 @@
-/*CopyrightHere*/
-package simphony.util.error;
-
-/**
- *
- *
- * @author Jerry Vos
- * @version $Revision: 1.1 $ $Date: 2005/11/07 18:42:32 $
- */
-public class ErrorEvent {
- private int errorCode;
-
- private Object info;
-
- private Throwable error;
-
- private Object[] metaData;
-
- public ErrorEvent(Throwable error, int errorCode, Object info,
- Object[] metaData) {
- super();
- this.error = error;
- this.errorCode = errorCode;
- this.info = info;
- this.metaData = metaData;
- }
-
-
- public Throwable getError() {
- return error;
- }
-
- public int getErrorCode() {
- return errorCode;
- }
-
- public Object getInfo() {
- return info;
- }
-
- public Object[] getMetaData() {
- return metaData;
- }
-}
+/*CopyrightHere*/
+package simphony.util.error;
+
+/**
+ *
+ *
+ * @author Jerry Vos
+ * @version $Revision: 1.1 $ $Date: 2005/11/07 18:42:32 $
+ */
+public class ErrorEvent {
+ private int errorCode;
+
+ private Object info;
+
+ private Throwable error;
+
+ private Object[] metaData;
+
+ public ErrorEvent(Throwable error, int errorCode, Object info,
+ Object[] metaData) {
+ super();
+ this.error = error;
+ this.errorCode = errorCode;
+ this.info = info;
+ this.metaData = metaData;
+ }
+
+
+ public Throwable getError() {
+ return error;
+ }
+
+ public int getErrorCode() {
+ return errorCode;
+ }
+
+ public Object getInfo() {
+ return info;
+ }
+
+ public Object[] getMetaData() {
+ return metaData;
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorHandler.java b/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorHandler.java
index ad776f7..d60a9b9 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorHandler.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/error/ErrorHandler.java
@@ -1,19 +1,19 @@
-/*CopyrightHere*/
-package simphony.util.error;
-
-/**
- * A handler used by {@link simphony.util.error.ErrorCenter} to handle errors.
- *
- * @author Jerry Vos
- * @version $Revision: 1.2 $ $Date: 2005/11/10 23:24:25 $
- */
-public interface ErrorHandler {
- /**
- * Attempts to handle an error.
- *
- * @param event
- * an error event with information about the error that occurred
- * @return whether or not the error was handled
- */
- public boolean handleError(ErrorEvent event);
-}
+/*CopyrightHere*/
+package simphony.util.error;
+
+/**
+ * A handler used by {@link simphony.util.error.ErrorCenter} to handle errors.
+ *
+ * @author Jerry Vos
+ * @version $Revision: 1.2 $ $Date: 2005/11/10 23:24:25 $
+ */
+public interface ErrorHandler {
+ /**
+ * Attempts to handle an error.
+ *
+ * @param event
+ * an error event with information about the error that occurred
+ * @return whether or not the error was handled
+ */
+ public boolean handleError(ErrorEvent event);
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/AbstractMessageListener.java b/festc_saf_core_runtime_temp/src/simphony/util/messages/AbstractMessageListener.java
index 9b420e7..c30f478 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/AbstractMessageListener.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/AbstractMessageListener.java
@@ -1,132 +1,132 @@
-/*CopyrightHere*/
-package simphony.util.messages;
-
-import java.util.Collection;
-import java.util.HashSet;
-
-import org.apache.log4j.Level;
-
-/**
- * An abstract {@link simphony.util.messages.MessageEventListener} that will filter
- * {@link simphony.util.messages.MessageEventListener} events if they don't have the correct
- * levels set.
- *
- * @author Jerry Vos
- * @version $Revision: 1.3 $ $Date: 2005/11/07 18:42:32 $
- */
-public abstract class AbstractMessageListener implements MessageEventListener {
- private HashSet listeningLevels;
-
- /**
- * Creates this class with no specific Levels to accept, therefore it
- * accepts all of them.
- */
- public AbstractMessageListener() {
- this.listeningLevels = new HashSet();
- }
-
- /**
- * Creates this class with the specified Levels to accept. Any message with
- * one of these levels will be accepted and passed on to the
- * {@link #handleMessage(MessageEvent)} method.
- *
- * @see #addListeningLevel(Level)
- * @see #removeListeningLevel(Level)
- *
- * @param listeningLevels
- * levels to accept
- */
- public AbstractMessageListener(Level... listeningLevels) {
- this();
- for (Level level : listeningLevels) {
- this.listeningLevels.add(level);
- }
- }
-
- /**
- * Creates this class with the specified Levels to accept. Any message with
- * one of these levels will be accepted and passed on to the
- * {@link #handleMessage(MessageEvent)} method.
- *
- * @see #addListeningLevel(Level)
- * @see #removeListeningLevel(Level)
- *
- * @param listeningLevels
- * levels to accept
- */
- public AbstractMessageListener(Iterable listeningLevels) {
- this();
- for (Level level : listeningLevels) {
- this.listeningLevels.add(level);
- }
- }
-
- /**
- * Recieves a {@link MessageEvent} and if either this class has no Levels
- * associated with it, or if the event's Level is one of those held in this
- * class, it will pass the event on to
- * {@link #handleMessage(MessageEvent, Object)}.
- *
- * @param event
- * the message event whose levels will be checked and possibly
- * passed on to {@link #handleMessage(MessageEvent, Object)}
- */
- public void messageReceived(MessageEvent event) {
- // accept if I'm accepting everything (nothing's been set to accept)
- // or it is in one of the levels I'm listening for
- if (listeningLevels.size() == 0
- || listeningLevels.contains(event.getLevel())) {
- handleMessage(event);
- }
- }
-
- /**
- * Adds a level that this class will accept and pass on to the
- * {@link #handleMessage(MessageEvent, Object)} method.
- *
- * @see #handleMessage(MessageEvent, Object)
- *
- * @param level
- * a level that when found in a message event will cause that
- * message to be accepted and passed on
- */
- public void addListeningLevel(Level level) {
- listeningLevels.add(level);
- }
-
- /**
- * Removes a level that this class will accept and pass on to the
- * {@link #handleMessage(MessageEvent, Object)} method.
- *
- * @see #handleMessage(MessageEvent, Object)
- *
- * @param level
- * a level that when found in a message event will cause that
- * message NOT to be accepted and passed on
- */
- public void removeListeningLevel(Level level) {
- listeningLevels.remove(level);
- }
-
- /**
- * Retrieves the levels that this class accepts. If there are no Levels
- * returned (ie the size of the collection is 0), then all Levels are
- * accepted.
- *
- * @return the levels that this class accepts
- */
- public Collection getListeningLevels() {
- return listeningLevels;
- }
-
- /**
- * This is the method subclasses should (have to) override to receive
- * {@link MessageEvent}s. The events passed to this method were received in
- * {@link #messageReceived(MessageEvent)} and contained a Level this class
- * was listening for.
- *
- * @param event
- * the event to act on.
- */
- protected abstract void handleMessage(MessageEvent event);
-}
+/*CopyrightHere*/
+package simphony.util.messages;
+
+import java.util.Collection;
+import java.util.HashSet;
+
+import org.apache.log4j.Level;
+
+/**
+ * An abstract {@link simphony.util.messages.MessageEventListener} that will filter
+ * {@link simphony.util.messages.MessageEventListener} events if they don't have the correct
+ * levels set.
+ *
+ * @author Jerry Vos
+ * @version $Revision: 1.3 $ $Date: 2005/11/07 18:42:32 $
+ */
+public abstract class AbstractMessageListener implements MessageEventListener {
+ private HashSet listeningLevels;
+
+ /**
+ * Creates this class with no specific Levels to accept, therefore it
+ * accepts all of them.
+ */
+ public AbstractMessageListener() {
+ this.listeningLevels = new HashSet();
+ }
+
+ /**
+ * Creates this class with the specified Levels to accept. Any message with
+ * one of these levels will be accepted and passed on to the
+ * {@link #handleMessage(MessageEvent)} method.
+ *
+ * @see #addListeningLevel(Level)
+ * @see #removeListeningLevel(Level)
+ *
+ * @param listeningLevels
+ * levels to accept
+ */
+ public AbstractMessageListener(Level... listeningLevels) {
+ this();
+ for (Level level : listeningLevels) {
+ this.listeningLevels.add(level);
+ }
+ }
+
+ /**
+ * Creates this class with the specified Levels to accept. Any message with
+ * one of these levels will be accepted and passed on to the
+ * {@link #handleMessage(MessageEvent)} method.
+ *
+ * @see #addListeningLevel(Level)
+ * @see #removeListeningLevel(Level)
+ *
+ * @param listeningLevels
+ * levels to accept
+ */
+ public AbstractMessageListener(Iterable listeningLevels) {
+ this();
+ for (Level level : listeningLevels) {
+ this.listeningLevels.add(level);
+ }
+ }
+
+ /**
+ * Recieves a {@link MessageEvent} and if either this class has no Levels
+ * associated with it, or if the event's Level is one of those held in this
+ * class, it will pass the event on to
+ * {@link #handleMessage(MessageEvent, Object)}.
+ *
+ * @param event
+ * the message event whose levels will be checked and possibly
+ * passed on to {@link #handleMessage(MessageEvent, Object)}
+ */
+ public void messageReceived(MessageEvent event) {
+ // accept if I'm accepting everything (nothing's been set to accept)
+ // or it is in one of the levels I'm listening for
+ if (listeningLevels.size() == 0
+ || listeningLevels.contains(event.getLevel())) {
+ handleMessage(event);
+ }
+ }
+
+ /**
+ * Adds a level that this class will accept and pass on to the
+ * {@link #handleMessage(MessageEvent, Object)} method.
+ *
+ * @see #handleMessage(MessageEvent, Object)
+ *
+ * @param level
+ * a level that when found in a message event will cause that
+ * message to be accepted and passed on
+ */
+ public void addListeningLevel(Level level) {
+ listeningLevels.add(level);
+ }
+
+ /**
+ * Removes a level that this class will accept and pass on to the
+ * {@link #handleMessage(MessageEvent, Object)} method.
+ *
+ * @see #handleMessage(MessageEvent, Object)
+ *
+ * @param level
+ * a level that when found in a message event will cause that
+ * message NOT to be accepted and passed on
+ */
+ public void removeListeningLevel(Level level) {
+ listeningLevels.remove(level);
+ }
+
+ /**
+ * Retrieves the levels that this class accepts. If there are no Levels
+ * returned (ie the size of the collection is 0), then all Levels are
+ * accepted.
+ *
+ * @return the levels that this class accepts
+ */
+ public Collection getListeningLevels() {
+ return listeningLevels;
+ }
+
+ /**
+ * This is the method subclasses should (have to) override to receive
+ * {@link MessageEvent}s. The events passed to this method were received in
+ * {@link #messageReceived(MessageEvent)} and contained a Level this class
+ * was listening for.
+ *
+ * @param event
+ * the event to act on.
+ */
+ protected abstract void handleMessage(MessageEvent event);
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/Log4jMessageListener.java b/festc_saf_core_runtime_temp/src/simphony/util/messages/Log4jMessageListener.java
index e70e9f8..36d8984 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/Log4jMessageListener.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/Log4jMessageListener.java
@@ -1,87 +1,87 @@
-package simphony.util.messages;
-
-import java.io.File;
-import java.util.Arrays;
-
-import org.apache.log4j.Logger;
-import org.apache.log4j.PropertyConfigurator;
-
-/**
- * A MessageEventListener that forwards messages on to log4j.
- *
- * @author Jerry Vos
- */
-public class Log4jMessageListener implements MessageEventListener {
-
- public static final String INTERNAL_ANCHOR = "MessageCenter" + "."
- + "INTERNAL";
-
- public static final String CONFIG_FILE_NAME = "MessageCenter.log4j.properties";
-
- static {
- if (new File(CONFIG_FILE_NAME).exists()) {
- PropertyConfigurator.configure(CONFIG_FILE_NAME);
- }/* else {
- loadDefaultSettings();
- }*/
-
- }
-
- private static Logger getLogger(String name) {
- return Logger.getLogger(INTERNAL_ANCHOR + "." + name);
- }
-
- private Logger logger;
-
- public Log4jMessageListener(Class clazz) {
- logger = getLogger(clazz.getName());
- }
-
- public Log4jMessageListener(String name) {
- logger = getLogger(name);
- }
-
- public Log4jMessageListener() {
- logger = Logger.getLogger(INTERNAL_ANCHOR);
- }
-
- /**
- * Sends a message to log4j with the event's level, message, and throwable
- * (if it is not null).
- *
- * @param event
- * a message event
- */
- public void messageReceived(MessageEvent event) {
- if (event.getThrowable() != null) {
- logger.log(event.getLevel(), getMessage(event), event
- .getThrowable());
- } else {
- logger.log(event.getLevel(), getMessage(event));
- }
- }
-
- protected String getMessage(MessageEvent event) {
- String message = (event.getMessage() == null ? "null" : event.getMessage().toString());
- Object[] metaData = event.getMetaData();
- if (metaData != null && metaData.length > 0) {
- message += " metaData=" + Arrays.toString(metaData);
- }
- return message;
- }
-
- /**
- * Loads the default logging settings. This sets up a console logger and a rolling file logger,
- * both allowing DEBUG messages and higher. The default settings are found in the properties file
- * in this package with the name {@link #CONFIG_FILE_NAME}.
- */
- public static void loadDefaultSettings() {
- PropertyConfigurator.configure(Log4jMessageListener.class.getResource(CONFIG_FILE_NAME));
- }
-
- public static void main(String[] args) {
- loadDefaultSettings();
- MessageCenter.getMessageCenter(Log4jMessageListener.class).fatal("blas", null);
- }
-
-}
+package simphony.util.messages;
+
+import java.io.File;
+import java.util.Arrays;
+
+import org.apache.log4j.Logger;
+import org.apache.log4j.PropertyConfigurator;
+
+/**
+ * A MessageEventListener that forwards messages on to log4j.
+ *
+ * @author Jerry Vos
+ */
+public class Log4jMessageListener implements MessageEventListener {
+
+ public static final String INTERNAL_ANCHOR = "MessageCenter" + "."
+ + "INTERNAL";
+
+ public static final String CONFIG_FILE_NAME = "MessageCenter.log4j.properties";
+
+ static {
+ if (new File(CONFIG_FILE_NAME).exists()) {
+ PropertyConfigurator.configure(CONFIG_FILE_NAME);
+ }/* else {
+ loadDefaultSettings();
+ }*/
+
+ }
+
+ private static Logger getLogger(String name) {
+ return Logger.getLogger(INTERNAL_ANCHOR + "." + name);
+ }
+
+ private Logger logger;
+
+ public Log4jMessageListener(Class clazz) {
+ logger = getLogger(clazz.getName());
+ }
+
+ public Log4jMessageListener(String name) {
+ logger = getLogger(name);
+ }
+
+ public Log4jMessageListener() {
+ logger = Logger.getLogger(INTERNAL_ANCHOR);
+ }
+
+ /**
+ * Sends a message to log4j with the event's level, message, and throwable
+ * (if it is not null).
+ *
+ * @param event
+ * a message event
+ */
+ public void messageReceived(MessageEvent event) {
+ if (event.getThrowable() != null) {
+ logger.log(event.getLevel(), getMessage(event), event
+ .getThrowable());
+ } else {
+ logger.log(event.getLevel(), getMessage(event));
+ }
+ }
+
+ protected String getMessage(MessageEvent event) {
+ String message = (event.getMessage() == null ? "null" : event.getMessage().toString());
+ Object[] metaData = event.getMetaData();
+ if (metaData != null && metaData.length > 0) {
+ message += " metaData=" + Arrays.toString(metaData);
+ }
+ return message;
+ }
+
+ /**
+ * Loads the default logging settings. This sets up a console logger and a rolling file logger,
+ * both allowing DEBUG messages and higher. The default settings are found in the properties file
+ * in this package with the name {@link #CONFIG_FILE_NAME}.
+ */
+ public static void loadDefaultSettings() {
+ PropertyConfigurator.configure(Log4jMessageListener.class.getResource(CONFIG_FILE_NAME));
+ }
+
+ public static void main(String[] args) {
+ loadDefaultSettings();
+ MessageCenter.getMessageCenter(Log4jMessageListener.class).fatal("blas", null);
+ }
+
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenter.java b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenter.java
index 065475f..073406a 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenter.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenter.java
@@ -1,182 +1,182 @@
-/*CopyrightHere*/
-package simphony.util.messages;
-
-import org.apache.log4j.Level;
-
-import java.util.*;
-
-/**
- * A class for handling all sorts of messages. This class receives messages of different levels
- * through it's different methods and passes these messages on to it's listeners. To
- * retrieve an instance of this class use {@link #getMessageCenter(Class)} or
- * {@link #getMessageCenter(Class, Map)}.
- *
- * @author Jerry Vos
- * @see #getMessageCenter(Class)
- * @see #getMessageCenter(Class, Map)
- * @see #addMessageListener(MessageEventListener)
- * @see #removeMessageListener(MessageEventListener)
- */
-public class MessageCenter {
-
- private static final MessageCenter msgCenter = getMessageCenter(MessageCenter.class);
-
- /**
- * Creates a MessageCenter for the specified class.
- *
- * @param clazz
- * @return the created MessageCenter
- */
- public static MessageCenter getMessageCenter(Class clazz) {
- if (clazz == null) {
- RuntimeException ex = new RuntimeException(
- "When creating a message center clazz must not be null");
- msgCenter
- .warn(
- "MessageCenter.getMessageCenter: Warning, "
- + "addLogger == true but clazz == null. Cannot add a logger when the class "
- + "parameter is null.", ex);
- }
- return getMessageCenter(clazz.getName(), true);
- }
-
- public static MessageCenter getMessageCenter(String name) {
- return getMessageCenter(name, true);
- }
-
- /**
- * TODO: fix this javadoc Creates a MessageCenter.
- *
- * @param name
- * an id for the message center
- * @param addLogger
- * whether or not to add an automatic logger to the MessageCenter
- * @return a created MessageCenter
- * @see Log4jMessageListener
- */
- public static MessageCenter getMessageCenter(String name, boolean addLogger) {
- MessageCenter newMsgCenter = new MessageCenter();
-
- if (addLogger) {
- if (name != null) {
- newMsgCenter.logListener = new Log4jMessageListener(name);
- } else {
- RuntimeException ex = new RuntimeException(
- "When adding a logger name must not be null");
- msgCenter
- .warn(
- "MessageCenter.getMessageCenter: Warning, "
- + "addLogger == true but name == null. Cannot add a logger when the name "
- + "parameter is null.", ex);
- }
- }
- return newMsgCenter;
- }
-
- /**
- * Currently this method is no different then {@link #getMessageCenter(Class)} but it is here in
- * case at some point MessageCenter's can be setup with a variety of properties.
- *
- * @param clazz
- * the class this message center is working for
- * @param properties
- * properties for creation of the MessageCenter (ignored for now)
- * @return a newly created MessageCenter
- * @see #getMessageCenter(Class)
- */
- public static MessageCenter getMessageCenter(Class clazz, Map properties) {
- return getMessageCenter(clazz);
- }
-
- // TODO: decide about the static business
- private static ArrayList listeners = new ArrayList();
-
- private Log4jMessageListener logListener;
-
- /**
- * Constructs the MessageCenter. See the static getMessageCenter(...) methods for instantiating
- * MessageCenters.
- *
- * @see #getMessageCenter(Class)
- */
- private MessageCenter() {
- }
-
- public void info(Object info, Object... metaData) {
- fireMessageEvent(Level.INFO, info, null, metaData);
- }
-
- public void trace(Object info, Object... metaData) {
- fireMessageEvent(Level.TRACE, info, null, metaData);
- }
-
- public void debug(Object info, Object... metaData) {
- fireMessageEvent(Level.DEBUG, info, null, metaData);
- }
-
- public void warn(Object info, Object... metaData) {
- fireMessageEvent(Level.WARN, info, null, metaData);
- }
-
- public void warn(Object info, Throwable error, Object... metaData) {
- fireMessageEvent(Level.WARN, info, error, metaData);
- }
-
- public void error(Object info, Throwable error, Object... metaData) {
- fireMessageEvent(Level.ERROR, info, error, metaData);
- }
-
- public void fatal(Object info, Throwable error, Object... metaData) {
- fireMessageEvent(Level.FATAL, info, error, metaData);
- }
-
- public void fireMessageEvent(Level level, Object info, Throwable throwable,
- Object... metaData) {
- List list;
- synchronized (listeners) {
- list = (List) listeners.clone();
- }
- MessageEvent event = new MessageEvent(this, level, info, throwable, metaData);
- for (MessageEventListener listener : list) {
- listener.messageReceived(event);
- }
- if (logListener != null)
- logListener.messageReceived(event);
- }
-
- public static void addMessageListener(MessageEventListener listener) {
- synchronized (listeners) {
- listeners.add(listener);
- }
- }
-
- public static void removeMessageListener(MessageEventListener listener) {
- synchronized (listeners) {
- listeners.remove(listener);
- }
- }
-
- public static Collection getMessageListeners() {
- return Collections.unmodifiableCollection(listeners);
- }
-
- /**
- * Retrieves the default message listener that forwards messages to log4j.
- *
- * @return the logging message listener
- */
- public Log4jMessageListener getLogListener() {
- return logListener;
- }
-
- /**
- * Sets the default message listener that forwards messages to log4j.
- *
- * @param logListener
- * the logging message listener (can be null, in which case no default log listener
- * is set)
- */
- public void setLogListener(Log4jMessageListener logListener) {
- this.logListener = logListener;
- }
-}
+/*CopyrightHere*/
+package simphony.util.messages;
+
+import org.apache.log4j.Level;
+
+import java.util.*;
+
+/**
+ * A class for handling all sorts of messages. This class receives messages of different levels
+ * through it's different methods and passes these messages on to it's listeners. To
+ * retrieve an instance of this class use {@link #getMessageCenter(Class)} or
+ * {@link #getMessageCenter(Class, Map)}.
+ *
+ * @author Jerry Vos
+ * @see #getMessageCenter(Class)
+ * @see #getMessageCenter(Class, Map)
+ * @see #addMessageListener(MessageEventListener)
+ * @see #removeMessageListener(MessageEventListener)
+ */
+public class MessageCenter {
+
+ private static final MessageCenter msgCenter = getMessageCenter(MessageCenter.class);
+
+ /**
+ * Creates a MessageCenter for the specified class.
+ *
+ * @param clazz
+ * @return the created MessageCenter
+ */
+ public static MessageCenter getMessageCenter(Class clazz) {
+ if (clazz == null) {
+ RuntimeException ex = new RuntimeException(
+ "When creating a message center clazz must not be null");
+ msgCenter
+ .warn(
+ "MessageCenter.getMessageCenter: Warning, "
+ + "addLogger == true but clazz == null. Cannot add a logger when the class "
+ + "parameter is null.", ex);
+ }
+ return getMessageCenter(clazz.getName(), true);
+ }
+
+ public static MessageCenter getMessageCenter(String name) {
+ return getMessageCenter(name, true);
+ }
+
+ /**
+ * TODO: fix this javadoc Creates a MessageCenter.
+ *
+ * @param name
+ * an id for the message center
+ * @param addLogger
+ * whether or not to add an automatic logger to the MessageCenter
+ * @return a created MessageCenter
+ * @see Log4jMessageListener
+ */
+ public static MessageCenter getMessageCenter(String name, boolean addLogger) {
+ MessageCenter newMsgCenter = new MessageCenter();
+
+ if (addLogger) {
+ if (name != null) {
+ newMsgCenter.logListener = new Log4jMessageListener(name);
+ } else {
+ RuntimeException ex = new RuntimeException(
+ "When adding a logger name must not be null");
+ msgCenter
+ .warn(
+ "MessageCenter.getMessageCenter: Warning, "
+ + "addLogger == true but name == null. Cannot add a logger when the name "
+ + "parameter is null.", ex);
+ }
+ }
+ return newMsgCenter;
+ }
+
+ /**
+ * Currently this method is no different then {@link #getMessageCenter(Class)} but it is here in
+ * case at some point MessageCenter's can be setup with a variety of properties.
+ *
+ * @param clazz
+ * the class this message center is working for
+ * @param properties
+ * properties for creation of the MessageCenter (ignored for now)
+ * @return a newly created MessageCenter
+ * @see #getMessageCenter(Class)
+ */
+ public static MessageCenter getMessageCenter(Class clazz, Map properties) {
+ return getMessageCenter(clazz);
+ }
+
+ // TODO: decide about the static business
+ private static ArrayList listeners = new ArrayList();
+
+ private Log4jMessageListener logListener;
+
+ /**
+ * Constructs the MessageCenter. See the static getMessageCenter(...) methods for instantiating
+ * MessageCenters.
+ *
+ * @see #getMessageCenter(Class)
+ */
+ private MessageCenter() {
+ }
+
+ public void info(Object info, Object... metaData) {
+ fireMessageEvent(Level.INFO, info, null, metaData);
+ }
+
+ public void trace(Object info, Object... metaData) {
+ fireMessageEvent(Level.TRACE, info, null, metaData);
+ }
+
+ public void debug(Object info, Object... metaData) {
+ fireMessageEvent(Level.DEBUG, info, null, metaData);
+ }
+
+ public void warn(Object info, Object... metaData) {
+ fireMessageEvent(Level.WARN, info, null, metaData);
+ }
+
+ public void warn(Object info, Throwable error, Object... metaData) {
+ fireMessageEvent(Level.WARN, info, error, metaData);
+ }
+
+ public void error(Object info, Throwable error, Object... metaData) {
+ fireMessageEvent(Level.ERROR, info, error, metaData);
+ }
+
+ public void fatal(Object info, Throwable error, Object... metaData) {
+ fireMessageEvent(Level.FATAL, info, error, metaData);
+ }
+
+ public void fireMessageEvent(Level level, Object info, Throwable throwable,
+ Object... metaData) {
+ List list;
+ synchronized (listeners) {
+ list = (List) listeners.clone();
+ }
+ MessageEvent event = new MessageEvent(this, level, info, throwable, metaData);
+ for (MessageEventListener listener : list) {
+ listener.messageReceived(event);
+ }
+ if (logListener != null)
+ logListener.messageReceived(event);
+ }
+
+ public static void addMessageListener(MessageEventListener listener) {
+ synchronized (listeners) {
+ listeners.add(listener);
+ }
+ }
+
+ public static void removeMessageListener(MessageEventListener listener) {
+ synchronized (listeners) {
+ listeners.remove(listener);
+ }
+ }
+
+ public static Collection getMessageListeners() {
+ return Collections.unmodifiableCollection(listeners);
+ }
+
+ /**
+ * Retrieves the default message listener that forwards messages to log4j.
+ *
+ * @return the logging message listener
+ */
+ public Log4jMessageListener getLogListener() {
+ return logListener;
+ }
+
+ /**
+ * Sets the default message listener that forwards messages to log4j.
+ *
+ * @param logListener
+ * the logging message listener (can be null, in which case no default log listener
+ * is set)
+ */
+ public void setLogListener(Log4jMessageListener logListener) {
+ this.logListener = logListener;
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenter.log4j.properties b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenter.log4j.properties
index 2588eb0..f75bdc7 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenter.log4j.properties
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenter.log4j.properties
@@ -1,17 +1,17 @@
-log4j.logger.MessageCenter.INTERNAL=info, stdout, R
-
-# Print only messages of level WARN or above in the package com.foo.
-#log4j.logger.com.foo=WARN
-
-log4j.appender.stdout=org.apache.log4j.ConsoleAppender
-log4j.appender.stdout.layout=simphony.util.messages.MessageCenterLayout
-# Pattern to output the caller's file name and line number.
-log4j.appender.stdout.layout.ConversionPattern=%-5p [%t] %d{ISO8601} %c - %m%n
-
-log4j.appender.R=org.apache.log4j.RollingFileAppender
-log4j.appender.R.File=debug.log
-log4j.appender.R.MaxFileSize=100KB
-# Keep one backup file
-log4j.appender.R.MaxBackupIndex=1
-log4j.appender.R.layout=simphony.util.messages.MessageCenterLayout
+log4j.logger.MessageCenter.INTERNAL=info, stdout, R
+
+# Print only messages of level WARN or above in the package com.foo.
+#log4j.logger.com.foo=WARN
+
+log4j.appender.stdout=org.apache.log4j.ConsoleAppender
+log4j.appender.stdout.layout=simphony.util.messages.MessageCenterLayout
+# Pattern to output the caller's file name and line number.
+log4j.appender.stdout.layout.ConversionPattern=%-5p [%t] %d{ISO8601} %c - %m%n
+
+log4j.appender.R=org.apache.log4j.RollingFileAppender
+log4j.appender.R.File=debug.log
+log4j.appender.R.MaxFileSize=100KB
+# Keep one backup file
+log4j.appender.R.MaxBackupIndex=1
+log4j.appender.R.layout=simphony.util.messages.MessageCenterLayout
log4j.appender.R.layout.ConversionPattern=%-5p [%t] %d{ISO8601} %c - %m%n
\ No newline at end of file
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenterLayout.java b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenterLayout.java
index c975eee..89c08ea 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenterLayout.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageCenterLayout.java
@@ -1,30 +1,30 @@
-/*CopyrightHere*/
-package simphony.util.messages;
-
-import org.apache.log4j.PatternLayout;
-import org.apache.log4j.spi.LoggingEvent;
-
-/**
- * This is a layout that strips from the messages the internal anchor of the message center. So a
- * message goes from "[main] FATAL MessageCenter.INTERNAL.simphony.util.messages.Log4jMessageListener blas"
- * to "[main] FATAL simphony.util.messages.Log4jMessageListener blas"
- *
- * @author Jerry Vos
- */
-public class MessageCenterLayout extends PatternLayout {
- public MessageCenterLayout(String pattern) {
- super(pattern);
- // TODO Auto-generated constructor stub
- // 2014: had to do this to get rid of an Eclipse error:
- // Implicit super constructor PatternLayout() is undefined for default constructor. Must define an explicit constructor.
- }
-
- public static final String REPLACED_STRING = Log4jMessageListener.INTERNAL_ANCHOR + ".";
-
- @Override
- public String format(LoggingEvent event) {
- String superFormat = super.format(event);
-
- return superFormat.replace(REPLACED_STRING, "");
- }
-}
+/*CopyrightHere*/
+package simphony.util.messages;
+
+import org.apache.log4j.PatternLayout;
+import org.apache.log4j.spi.LoggingEvent;
+
+/**
+ * This is a layout that strips from the messages the internal anchor of the message center. So a
+ * message goes from "[main] FATAL MessageCenter.INTERNAL.simphony.util.messages.Log4jMessageListener blas"
+ * to "[main] FATAL simphony.util.messages.Log4jMessageListener blas"
+ *
+ * @author Jerry Vos
+ */
+public class MessageCenterLayout extends PatternLayout {
+ public MessageCenterLayout(String pattern) {
+ super(pattern);
+ // TODO Auto-generated constructor stub
+ // 2014: had to do this to get rid of an Eclipse error:
+ // Implicit super constructor PatternLayout() is undefined for default constructor. Must define an explicit constructor.
+ }
+
+ public static final String REPLACED_STRING = Log4jMessageListener.INTERNAL_ANCHOR + ".";
+
+ @Override
+ public String format(LoggingEvent event) {
+ String superFormat = super.format(event);
+
+ return superFormat.replace(REPLACED_STRING, "");
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageEvent.java b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageEvent.java
index 28184be..8c6e13a 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageEvent.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageEvent.java
@@ -1,50 +1,50 @@
-/*CopyrightHere*/
-package simphony.util.messages;
-
-import org.apache.log4j.Level;
-
-public class MessageEvent {
- private Object source;
-
- private Level level;
-
- private Object message;
-
- private Object[] metaData;
-
- private Throwable throwable;
-
- public MessageEvent(Object source, Level level, Object message,
- Throwable throwable, Object... metaData) {
- super();
- this.source = source;
- this.level = level;
- this.message = message;
- this.metaData = metaData;
- this.throwable = throwable;
- }
-
- public MessageEvent(Object source, Level level, Object message) {
- this(source, level, message, null);
- }
-
- public Level getLevel() {
- return level;
- }
-
- public Object getMessage() {
- return message;
- }
-
- public Object[] getMetaData() {
- return metaData;
- }
-
- public Throwable getThrowable() {
- return throwable;
- }
-
- public Object getSource() {
- return source;
- }
-}
+/*CopyrightHere*/
+package simphony.util.messages;
+
+import org.apache.log4j.Level;
+
+public class MessageEvent {
+ private Object source;
+
+ private Level level;
+
+ private Object message;
+
+ private Object[] metaData;
+
+ private Throwable throwable;
+
+ public MessageEvent(Object source, Level level, Object message,
+ Throwable throwable, Object... metaData) {
+ super();
+ this.source = source;
+ this.level = level;
+ this.message = message;
+ this.metaData = metaData;
+ this.throwable = throwable;
+ }
+
+ public MessageEvent(Object source, Level level, Object message) {
+ this(source, level, message, null);
+ }
+
+ public Level getLevel() {
+ return level;
+ }
+
+ public Object getMessage() {
+ return message;
+ }
+
+ public Object[] getMetaData() {
+ return metaData;
+ }
+
+ public Throwable getThrowable() {
+ return throwable;
+ }
+
+ public Object getSource() {
+ return source;
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageEventListener.java b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageEventListener.java
index c18ad1e..1a13bfd 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageEventListener.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/MessageEventListener.java
@@ -1,20 +1,20 @@
-/*CopyrightHere*/
-package simphony.util.messages;
-
-/**
- * This is used by {@link simphony.util.messages.MessageCenter} as a sink for
- * messages it receives. When a MessageCenter recieves a message it will call
- * the methods in this interface with information on the message.
- *
- * @author Jerry Vos
- * @version $Revision: 1.2 $ $Date: 2005/11/10 23:24:25 $
- */
-public interface MessageEventListener {
- /**
- * Called when a message was received in the MessageCenter.
- *
- * @param event
- * the message event
- */
- void messageReceived(MessageEvent event);
-}
+/*CopyrightHere*/
+package simphony.util.messages;
+
+/**
+ * This is used by {@link simphony.util.messages.MessageCenter} as a sink for
+ * messages it receives. When a MessageCenter recieves a message it will call
+ * the methods in this interface with information on the message.
+ *
+ * @author Jerry Vos
+ * @version $Revision: 1.2 $ $Date: 2005/11/10 23:24:25 $
+ */
+public interface MessageEventListener {
+ /**
+ * Called when a message was received in the MessageCenter.
+ *
+ * @param event
+ * the message event
+ */
+ void messageReceived(MessageEvent event);
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/NullTaskMessage.java b/festc_saf_core_runtime_temp/src/simphony/util/messages/NullTaskMessage.java
index cbbeab8..5d34b6f 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/NullTaskMessage.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/NullTaskMessage.java
@@ -1,12 +1,12 @@
-package simphony.util.messages;
-
-public class NullTaskMessage extends TaskMessage {
-
- public NullTaskMessage() {
- super(TaskStatus.NULL, null, null);
- }
-
- public String toString() {
- return "NULL MESSAGE";
- }
-}
+package simphony.util.messages;
+
+public class NullTaskMessage extends TaskMessage {
+
+ public NullTaskMessage() {
+ super(TaskStatus.NULL, null, null);
+ }
+
+ public String toString() {
+ return "NULL MESSAGE";
+ }
+}
diff --git a/festc_saf_core_runtime_temp/src/simphony/util/messages/StackTaskMessageListener.java b/festc_saf_core_runtime_temp/src/simphony/util/messages/StackTaskMessageListener.java
index 25d3f2b..1397169 100644
--- a/festc_saf_core_runtime_temp/src/simphony/util/messages/StackTaskMessageListener.java
+++ b/festc_saf_core_runtime_temp/src/simphony/util/messages/StackTaskMessageListener.java
@@ -1,62 +1,62 @@
-package simphony.util.messages;
-
-import java.util.HashSet;
-import java.util.Set;
-import java.util.Stack;
-
-public class StackTaskMessageListener extends TaskMessageListener {
-
- Stack messageStack = new Stack();
-
- Set
