python-app.yml

name: Test pySEQTarget

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

permissions:
  contents: read

jobs:
  test:
    runs-on: macos-26
    strategy:
      matrix:
        python-version: ["3.11", "3.12", "3.13", "3.14"]

    steps:
    - uses: actions/checkout@v6

    - name: Install uv
      uses: astral-sh/setup-uv@v7

    - name: Set up Python ${{ matrix.python-version }}
      run: uv python install ${{ matrix.python-version }}

    - name: Install dependencies
      run: |
        uv venv --python ${{ matrix.python-version }}
        uv pip install flake8 pytest pytest-cov
        uv pip install -e .

    - name: Lint with flake8
      run: |
        uv run flake8 . --exclude=.venv --count --select=E9,F63,F7,F82 --show-source --statistics
        uv run flake8 . --exclude=.venv --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

    - name: Test with pytest
      run: |
        uv run pytest tests/ -v --cov=pySEQTarget --cov-report=xml

    - name: Upload coverage reports to Codecov
      uses: codecov/codecov-action@v5
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        slug: CausalInference/pySEQTarget