To do features

[ArthurDeclercq]

• Write simple input that takes tsv or csv file with: peptidoform, spectrum_id, precursor_mz and write to Peptidoforms
• Write a function that takes a peptidoform removes modifications and generates potential other candidates
• Read and process spectrum files with a new class (mgf and mzml) mayeb .d
• Generate alternative proteoforms, given a certain set of fragment ions (isobaric candidates)
• Give the (un)certainties for identifications based on the fact of certain peaks who are found or not
• binary search
• Modification evidence
• Double mod
• Isotopes
• Multiple charges on modifications

[jaspervdh]

parse csv files: 9e648a2

[jaspervdh]

binary search: db285ed