From c9198ca4ecfff8d19751894c795ed4d2b21dad41 Mon Sep 17 00:00:00 2001 From: trz42 <12829274+trz42@users.noreply.github.com> Date: Tue, 5 May 2026 03:24:38 +0000 Subject: [PATCH] update overview of available software --- docs/available_software/detail/biom-format.md | 3 ++- docs/available_software/detail/scikit-bio.md | 20 +++++++++++++++++-- .../available_software/detail/scikit-learn.md | 6 ++++-- docs/available_software/detail/statsmodels.md | 5 ++++- mkdocs.yml | 2 +- 5 files changed, 29 insertions(+), 7 deletions(-) diff --git a/docs/available_software/detail/biom-format.md b/docs/available_software/detail/biom-format.md index 05b65a18df..bc620d3aa0 100644 --- a/docs/available_software/detail/biom-format.md +++ b/docs/available_software/detail/biom-format.md @@ -25,7 +25,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''2.1.15'']' + softwareVersion: '[''2.1.17'', ''2.1.15'']' url: https://biom-format.org --- # biom-format @@ -45,4 +45,5 @@ The BIOM file format (canonically pronounced biome) is designed to be |biom-format version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|2.1.17|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`biom-format/2.1.17-foss-2025a`| |2.1.15|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`biom-format/2.1.15-foss-2023a`| \ No newline at end of file diff --git a/docs/available_software/detail/scikit-bio.md b/docs/available_software/detail/scikit-bio.md index ddd9ba7052..5b3812a95a 100644 --- a/docs/available_software/detail/scikit-bio.md +++ b/docs/available_software/detail/scikit-bio.md @@ -25,7 +25,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''0.6.0'']' + softwareVersion: '[''0.7.1.post1'', ''0.6.0'']' url: http://scikit-bio.org --- # scikit-bio @@ -41,6 +41,7 @@ and educational resources for bioinformatics. |scikit-bio version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|0.7.1.post1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`scikit-bio/0.7.1.post1-foss-2025a`| |0.6.0|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`scikit-bio/0.6.0-foss-2023a`| ## Extensions @@ -48,6 +49,13 @@ and educational resources for bioinformatics. Overview of extensions included in scikit-bio installations +### array_api_compat + + +|`array_api_compat` version|scikit-bio modules that include it| +| --- | --- | +|1.13.0|`scikit-bio/0.7.1.post1-foss-2025a`| + ### hdmedians @@ -60,11 +68,19 @@ Overview of extensions included in scikit-bio installations |`natsort` version|scikit-bio modules that include it| | --- | --- | -|8.4.0|`scikit-bio/0.6.0-foss-2023a`| +|8.4.0|`scikit-bio/0.7.1.post1-foss-2025a`
`scikit-bio/0.6.0-foss-2023a`| + +### packaging + + +|`packaging` version|scikit-bio modules that include it| +| --- | --- | +|25.0|`scikit-bio/0.7.1.post1-foss-2025a`| ### scikit-bio |`scikit-bio` version|scikit-bio modules that include it| | --- | --- | +|0.7.1.post1|`scikit-bio/0.7.1.post1-foss-2025a`| |0.6.0|`scikit-bio/0.6.0-foss-2023a`| \ No newline at end of file diff --git a/docs/available_software/detail/scikit-learn.md b/docs/available_software/detail/scikit-learn.md index eb13698083..d02cba3f3b 100644 --- a/docs/available_software/detail/scikit-learn.md +++ b/docs/available_software/detail/scikit-learn.md @@ -31,7 +31,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''1.5.2'', ''1.4.0'', ''1.3.1'']' + softwareVersion: '[''1.7.0'', ''1.5.2'', ''1.4.0'', ''1.3.1'']' url: https://scikit-learn.org/stable/index.html --- # scikit-learn @@ -49,6 +49,7 @@ It strives to be simple and efficient, accessible to everybody, and reusable in |scikit-learn version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|1.7.0|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`scikit-learn/1.7.0-gfbf-2025a`| |1.5.2|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`scikit-learn/1.5.2-gfbf-2024a`| |1.4.0|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`scikit-learn/1.4.0-gfbf-2023b`| |1.3.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`scikit-learn/1.3.1-gfbf-2023a`| @@ -63,6 +64,7 @@ Overview of extensions included in scikit-learn installations |`scikit-learn` version|scikit-learn modules that include it| | --- | --- | +|1.7.0|`scikit-learn/1.7.0-gfbf-2025a`| |1.5.2|`scikit-learn/1.5.2-gfbf-2024a`| |1.4.0|`scikit-learn/1.4.0-gfbf-2023b`| |1.3.1|`scikit-learn/1.3.1-gfbf-2023a`| @@ -72,4 +74,4 @@ Overview of extensions included in scikit-learn installations |`sklearn` version|scikit-learn modules that include it| | --- | --- | -|0.0|`scikit-learn/1.5.2-gfbf-2024a`
`scikit-learn/1.4.0-gfbf-2023b`
`scikit-learn/1.3.1-gfbf-2023a`| \ No newline at end of file +|0.0|`scikit-learn/1.7.0-gfbf-2025a`
`scikit-learn/1.5.2-gfbf-2024a`
`scikit-learn/1.4.0-gfbf-2023b`
`scikit-learn/1.3.1-gfbf-2023a`| \ No newline at end of file diff --git a/docs/available_software/detail/statsmodels.md b/docs/available_software/detail/statsmodels.md index 7dc193f9e6..101fc1a975 100644 --- a/docs/available_software/detail/statsmodels.md +++ b/docs/available_software/detail/statsmodels.md @@ -25,7 +25,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''0.14.1'']' + softwareVersion: '[''0.14.5'', ''0.14.1'']' url: https://www.statsmodels.org/ --- # statsmodels @@ -41,6 +41,7 @@ and perform statistical tests. |statsmodels version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|0.14.5|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`statsmodels/0.14.5-gfbf-2025a`| |0.14.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`statsmodels/0.14.1-gfbf-2023b`| |0.14.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`statsmodels/0.14.1-gfbf-2023a`| @@ -54,6 +55,7 @@ Overview of extensions included in statsmodels installations |`patsy` version|statsmodels modules that include it| | --- | --- | +|1.0.1|`statsmodels/0.14.5-gfbf-2025a`| |0.5.6|`statsmodels/0.14.1-gfbf-2023b`
`statsmodels/0.14.1-gfbf-2023a`| ### statsmodels @@ -61,4 +63,5 @@ Overview of extensions included in statsmodels installations |`statsmodels` version|statsmodels modules that include it| | --- | --- | +|0.14.5|`statsmodels/0.14.5-gfbf-2025a`| |0.14.1|`statsmodels/0.14.1-gfbf-2023b`
`statsmodels/0.14.1-gfbf-2023a`| \ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml index 2ed7f7415e..8f957a1b31 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -212,7 +212,7 @@ extra: - icon: fontawesome/brands/twitter link: https://twitter.com/eessi_hpc # this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action - generated_time: "Fri, 01 May 2026 at 13:26:54 UTC" + generated_time: "Tue, 05 May 2026 at 03:24:36 UTC" slack_invite_url: "https://join.slack.com/t/eessi-hpc/shared_invite/zt-2wg10p26d-m_CnRB89xQq3zk9qxf1k3g" extra_javascript: # mermaid diagram