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ISlideSource.cs
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342 lines (294 loc) · 10.1 KB
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using BruTile;
using BruTile.Cache;
using OpenCvSharp;
using System;
using System.Collections.Generic;
using System.IO;
using System.Linq;
namespace OpenSlideSharp.BruTile
{
public abstract class SlideSourceBase : ISlideSource, IDisposable
{
#region Static
public static bool UseRealResolution { get; set; } = true;
private static IDictionary<string, Func<string, bool, ISlideSource>> keyValuePairs = new Dictionary<string, Func<string, bool, ISlideSource>>();
/// <summary>
/// resister decode for Specific format
/// </summary>
/// <param name="extensionUpper">dot and extension upper</param>
/// <param name="factory">file path,enable cache,decoder</param>
public static void Resister(string extensionUpper, Func<string, bool, ISlideSource> factory)
{
keyValuePairs.Add(extensionUpper, factory);
}
public static ISlideSource Create(string source, bool enableCache = true)
{
var ext = Path.GetExtension(source).ToUpper();
try
{
if (keyValuePairs.TryGetValue(ext, out var factory) && factory != null)
return factory.Invoke(source, enableCache);
if (!string.IsNullOrEmpty(OpenSlideBase.DetectVendor(source)))
return new OpenSlideBase(source, enableCache);
}
catch (Exception) { }
return null;
}
#endregion
public abstract byte[] GetTile(TileInfo tileInfo);
public double MinUnitsPerPixel { get; protected set; }
protected MemoryCache<Mat> _bgraCache = new MemoryCache<Mat>();
public virtual byte[] GetSlice(SliceInfo sliceInfo)
{
if (sliceInfo.Extent.Intersects(Schema.Extent) && sliceInfo.Resolution != 0)
{
var curLevel = TileUtil.GetLevel(Schema.Resolutions, sliceInfo.Resolution, sliceInfo.Parame.SampleMode);
var curUnitsPerPixel = Schema.Resolutions[curLevel].UnitsPerPixel;
var tileInfos = Schema.GetTileInfos(sliceInfo.Extent, curLevel);
Func<TileInfo, Mat> getOrInsterCache = new Func<TileInfo, Mat>(_ =>
{
var cache = _bgraCache.Find(_.Index);
if (cache == null)
{
cache = Mat.ImDecode(GetTile(_));
_bgraCache.Add(_.Index, cache);
}
return cache;
});
var tiles = tileInfos.Select(_ => Tuple.Create(_.Extent.WorldToPixelInvertedY(curUnitsPerPixel), getOrInsterCache.Invoke(_))); var srcPixelExtent = sliceInfo.Extent.WorldToPixelInvertedY(curUnitsPerPixel);
var dstPixelExtent = sliceInfo.Extent.WorldToPixelInvertedY(sliceInfo.Resolution);
var dstPixelHeight = sliceInfo.Parame.DstPixelHeight > 0 ? sliceInfo.Parame.DstPixelHeight : dstPixelExtent.Height;
var dstPixelWidth = sliceInfo.Parame.DstPixelWidth > 0 ? sliceInfo.Parame.DstPixelWidth : dstPixelExtent.Width;
return ImageUtil.Join(tiles, srcPixelExtent, new Extent(0, 0, dstPixelWidth, dstPixelHeight), sliceInfo.Parame.Quality);
}
return null;
}
public ITileSchema Schema { get; protected set; }
public string Name { get; protected set; }
public Attribution Attribution { get; protected set; }
public IReadOnlyDictionary<string, object> ExternInfo { get; protected set; }
public string Source { get; protected set; }
public abstract IReadOnlyDictionary<string, byte[]> GetExternImages();
#region IDisposable
private bool disposedValue;
protected virtual void Dispose(bool disposing)
{
if (!disposedValue)
{
if (disposing)
{
_bgraCache.Dispose();
}
disposedValue = true;
}
}
~SlideSourceBase()
{
Dispose(disposing: false);
}
public void Dispose()
{
Dispose(disposing: true);
GC.SuppressFinalize(this);
}
#endregion
}
/// <summary>
///
/// </summary>
public interface ISlideSource : ITileSource, ISliceProvider, ISlideExternInfo
{
}
/// <summary>
/// </summary>
public interface ISlideExternInfo
{
/// <summary>
/// File path.
/// </summary>
string Source { get; }
/// <summary>
/// Extern info.
/// </summary>
IReadOnlyDictionary<string, object> ExternInfo { get; }
/// <summary>
/// Extern image.
/// </summary>
/// <returns></returns>
IReadOnlyDictionary<string, byte[]> GetExternImages();
}
/// <summary>
/// </summary>
public interface ISliceProvider
{
/// <summary>
/// um/pixel
/// </summary>
double MinUnitsPerPixel { get; }
/// <summary>
/// Get slice.
/// </summary>
/// <param name="sliceInfo">Slice info</param>
/// <returns></returns>
byte[] GetSlice(SliceInfo sliceInfo);
}
/// <summary>
/// Slice info.
/// </summary>
public class SliceInfo
{
public SliceInfo() { }
/// <summary>
/// Create a world extent by pixel and resolution.
/// </summary>
/// <param name="xPixel">pixel x</param>
/// <param name="yPixel">pixel y</param>
/// <param name="widthPixel">pixel width</param>
/// <param name="heightPixel">pixel height</param>
/// <param name="unitsPerPixel">um/pixel</param>
public SliceInfo(double xPixel, double yPixel, double widthPixel, double heightPixel, double unitsPerPixel)
{
Extent = new Extent(xPixel, yPixel, xPixel + widthPixel, yPixel + heightPixel).PixelToWorldInvertedY(unitsPerPixel);
Resolution = unitsPerPixel;
}
/// <summary>
/// um/pixel
/// </summary>
public double Resolution
{
get;
set;
} = 1;
/// <summary>
/// World extent.
/// </summary>
public Extent Extent
{
get;
set;
}
public SliceParame Parame
{
get;
set;
} = new SliceParame();
}
public class SliceParame
{
/// <summary>
/// Scale to width,default 0(no scale)
/// /// </summary>
public int DstPixelWidth { get; set; } = 0;
/// <summary>
/// Scale to height,default 0(no scale)
/// </summary>
public int DstPixelHeight { get; set; } = 0;
/// <summary>
/// Sample mode.
/// </summary>
public SampleMode SampleMode { get; set; } = SampleMode.Nearest;
/// <summary>
/// Image quality.
/// </summary>
public int? Quality { get; set; }
}
public enum SampleMode
{
/// <summary>
/// Nearest.
/// </summary>
Nearest = 0,
/// <summary>
/// Nearest up.
/// </summary>
NearestUp,
/// <summary>
/// Nearest dwon.
/// </summary>
NearestDwon,
/// <summary>
/// Top.
/// </summary>
Top,
/// <summary>
/// Bottom.
/// </summary>
/// <remarks>
/// maybe very slow, just for clearer images.
/// </remarks>
Bottom,
}
/// <summary>
/// Image type.
/// </summary>
public enum ImageType : int
{
/// <summary>
/// </summary>
Label,
/// <summary>
/// </summary>
Title,
/// <summary>
/// </summary>
Preview,
}
public static class ExtentEx
{
/// <summary>
/// Convert OSM world to pixel
/// </summary>
/// <param name="extent">world extent</param>
/// <param name="unitsPerPixel">resolution,um/pixel</param>
/// <returns></returns>
public static Extent WorldToPixelInvertedY(this Extent extent, double unitsPerPixel)
{
return new Extent(extent.MinX / unitsPerPixel, -extent.MaxY / unitsPerPixel, extent.MaxX / unitsPerPixel, -extent.MinY / unitsPerPixel);
}
/// <summary>
/// Convert pixel to OSM world.
/// </summary>
/// <param name="extent">pixel extent</param>
/// <param name="unitsPerPixel">resolution,um/pixel</param>
/// <returns></returns>
public static Extent PixelToWorldInvertedY(this Extent extent, double unitsPerPixel)
{
return new Extent(extent.MinX * unitsPerPixel, -extent.MaxY * unitsPerPixel, extent.MaxX * unitsPerPixel, -extent.MinY * unitsPerPixel);
}
/// <summary>
/// Convert double to int.
/// </summary>
/// <param name="extent"></param>
/// <returns></returns>
public static Extent ToIntegerExtent(this Extent extent)
{
return new Extent((int)(extent.MinX + 0.5), (int)(extent.MinY + 0.5), (int)(extent.MaxX + 0.5), (int)(extent.MaxY + 0.5));
}
}
public static class ObjectEx
{
/// <summary>
/// Get fields and properties
/// </summary>
/// <param name="obj"></param>
/// <returns></returns>
public static Dictionary<string, object> GetFieldsProperties(this object obj)
{
Dictionary<string, object> keys = new Dictionary<string, object>();
foreach (var item in obj.GetType().GetFields())
{
keys.Add(item.Name, item.GetValue(obj));
}
foreach (var item in obj.GetType().GetProperties())
{
try
{
if (item.GetIndexParameters().Any()) continue;
keys.Add(item.Name, item.GetValue(obj));
}
catch (Exception) { }
}
return keys;
}
}
}