dependency updates

Author: labkey-martyp

gradle.properties

@@ -110,8 +110,8 @@ asmVersion=9.7.1
 batikVersion=1.18
 
 # sync with Tika version (or later)
-bouncycastlePgpVersion=1.79
-bouncycastleVersion=1.79
+bouncycastlePgpVersion=1.80
+bouncycastleVersion=1.80
 
 cglibNodepVersion=2.2.3
 
@@ -121,8 +121,8 @@ commonmarkVersion=0.24.0
 
 # the beanutils version is not the default version brought from commons-validator and/or commons-digester
 # in the :server:api module but is required for some of our code to compile
-commonsBeanutilsVersion=1.10.0
-commonsCodecVersion=1.17.1
+commonsBeanutilsVersion=1.10.1
+commonsCodecVersion=1.18.0
 commonsCollections4Version=4.4
 commonsCollectionsVersion=3.2.2
 commonsCompressVersion=1.27.1
@@ -132,14 +132,14 @@ commonsDiscoveryVersion=0.2
 commonsIoVersion=2.18.0
 commonsLang3Version=3.17.0
 commonsLangVersion=2.6
-commonsLoggingVersion=1.3.4
+commonsLoggingVersion=1.3.5
 commonsMath3Version=3.6.1
 commonsPoolVersion=1.6
 commonsTextVersion=1.13.0
 commonsValidatorVersion=1.9.0
 commonsVfs2Version=2.7.0
 
-datadogVersion=1.45.1
+datadogVersion=1.46.1
 
 dom4jVersion=2.1.4
 
@@ -156,17 +156,17 @@ fopVersion=2.10
 # Force latest for consistency
 googleAutoValueAnnotationsVersion=1.10.4
 googleErrorProneAnnotationsVersion=2.36.0
-googleHttpClientVersion=1.45.3
+googleHttpClientVersion=1.46.1
 googleOauthClientVersion=1.37.0
-googleProtocolBufVersion=3.25.5
+googleProtocolBufVersion=3.25.6
 
 # Cloud and SequenceAnalysis bring gson in as a transitive dependency.
 # We resolve to the later version here to keep things consistent
 # Note: Current jclouds seems to require 2.8.9; attempting to upgrade to 2.9.0 cratered the S3 test suite with many
 # "java.lang.NoSuchMethodError: 'void com.google.gson.internal.ConstructorConstructor.<init>(java.util.Map)'" errors
 gsonVersion=2.8.9
 
-grpcVersion=1.69.1
+grpcVersion=1.70.0
 
 guavaVersion=33.4.0-jre
 
@@ -182,8 +182,8 @@ hamcrestVersion=2.2
 # Note: if changing this, we might need to match with the picard version in the SequenceAnalysis module build.gradle
 htsjdkVersion=4.0.0
 
-httpclient5Version=5.4.1
-httpcore5Version=5.3.2
+httpclient5Version=5.4.2
+httpcore5Version=5.3.3
 
 # Not used directly, but these are widely used transitive dependencies
 httpclientVersion=4.5.14
@@ -192,10 +192,10 @@ httpcoreVersion=4.4.16
 intellijKotlinVersion=1.9.10
 
 # Update all Jackson dependency versions below in tandem, unless one gets a patch release out-of-sync with the others
-jacksonVersion=2.18.2
-jacksonAnnotationsVersion=2.18.2
-jacksonDatabindVersion=2.18.2
-jacksonJaxrsBaseVersion=2.18.2
+jacksonVersion=2.18.3
+jacksonAnnotationsVersion=2.18.3
+jacksonDatabindVersion=2.18.3
+jacksonJaxrsBaseVersion=2.18.3
 
 # The Jakarta Activation API version that Angus Activation implements. Keep in sync with angusActivationVersion (above).
 jakartaActivationApiVersion=2.1.3
@@ -223,7 +223,7 @@ jfreechartVersion=1.0.19
 
 jmockVersion=2.6.0
 
-jodaTimeVersion=2.13.0
+jodaTimeVersion=2.13.1
 
 # brought in transitively from guava and other google packages. Need to resolve consistently
 jsr305Version=3.0.2
@@ -246,10 +246,10 @@ luceneVersion=9.12.1
 
 mssqlJdbcVersion=12.8.1.jre11
 
-mysqlDriverVersion=9.1.0
+mysqlDriverVersion=9.2.0
 
 # forced compatibility between docker and UserReg-WS
-nettyVersion=4.1.118.Final
+nettyVersion=4.1.119.Final
 
 objenesisVersion=1.0
 
@@ -259,10 +259,10 @@ opencsvVersion=2.3
 openTracingVersion=0.33.0
 
 # sync with version Tika ships
-pdfboxVersion=3.0.3
+pdfboxVersion=3.0.4
 
 # sync with version Tika ships
-poiVersion=5.3.0
+poiVersion=5.4.0
 
 pollingWatchVersion=0.2.0
 
@@ -289,19 +289,19 @@ slf4jLog4jApiVersion=2.0.16
 snappyJavaVersion=1.1.10.7
 
 # Also, update apacheTomcatVersion above to match Spring Boot's Tomcat dependency version
-springBootVersion=3.4.1
+springBootVersion=3.4.3
 # This usually matches the Spring Framework version dictated by springBootVersion
 springVersion=6.2.3
 
-sqliteJdbcVersion=3.48.0.0
+sqliteJdbcVersion=3.49.0.0
 
 # NLP and SAML bring stax2-api in as a transitive dependency but with very different versions. We force the later version.
 stax2ApiVersion=4.2.2
 
 thumbnailatorVersion=0.4.20
 
 # used for tika-core in API and tika-parsers in search
-tikaVersion=3.0.0
+tikaVersion=3.1.0
 
 # sync with Tika
 tukaaniXZVersion=1.10