Nillion x Monadic Copy and LLM fixes (#31)

vishakh · web-flow · commit e8a5feb7a75e · 2025-12-19T15:34:52.000-05:00
* Removed all Gwasifier references.

* Fixed a nilAI usage bug.
diff --git a/README.md b/README.md
@@ -98,7 +98,7 @@ npm run dev
 **Security Note:**
 - Dev mode ONLY activates when `NODE_ENV==='development'` AND `hostname==='localhost'`
 - Password stored in plain text in IndexedDB (local only, never sent to server)
-- Clear dev data: `indexedDB.deleteDatabase('gwasifier_dev_mode')` in browser console
+- Clear dev data: `indexedDB.deleteDatabase('monaidc_dna_explorer_dev_mode')` in browser console
 
 **Enable Full Auto-Load in Brave:**
 1. Open `brave://settings/`
@@ -378,7 +378,7 @@ WHERE accessed_at < NOW() - INTERVAL '90 days'
 
 ## Premium Features & Payments
 
-GWASifier offers premium features including LLM-powered genetic analysis chat, Run All analysis, and comprehensive reports.
+Monadic DNA Explorer offers premium features including LLM-powered genetic analysis chat, Run All analysis, and comprehensive reports.
 
 ### Dual Payment System
 
diff --git a/STABLECOIN_PAYMENTS.md b/STABLECOIN_PAYMENTS.md
@@ -2,7 +2,7 @@
 
 ## Overview
 
-GWASifier Premium now uses a **database-free, stablecoin-based payment system**. Users pay with stablecoins (USDC, USDT, or DAI) from their connected wallet, and subscription status is verified on-chain using Alchemy's indexer API.
+Monadic DNA Explorer Premium now uses a **database-free, stablecoin-based payment system**. Users pay with stablecoins (USDC, USDT, or DAI) from their connected wallet, and subscription status is verified on-chain using Alchemy's indexer API.
 
 ## How It Works
 
diff --git a/app/components/DisclaimerModal.tsx b/app/components/DisclaimerModal.tsx
@@ -31,10 +31,10 @@ export default function DisclaimerModal({ isOpen, onClose, type, onAccept }: Dis
     // More generous threshold for reaching bottom
     const threshold = 30;
     const isAtBottom = scrollTop + clientHeight >= scrollHeight - threshold;
-    
+
     // Also check if content is shorter than container (no scrolling needed)
     const needsScrolling = scrollHeight > clientHeight;
-    
+
     if (isAtBottom || !needsScrolling) {
       setHasScrolledToBottom(true);
     }
@@ -64,7 +64,7 @@ export default function DisclaimerModal({ isOpen, onClose, type, onAccept }: Dis
       <div className="disclaimer-text" onScroll={handleScroll}>
         <p><strong>This is an entertainment and educational application only.</strong></p>
 
-        <p>GWASifier is designed for entertainment, curiosity, and educational purposes. It is <strong>NOT</strong> a medical device, diagnostic tool, or healthcare application.</p>
+        <p>Monadic DNA Explorer is designed for entertainment, curiosity, and educational purposes. It is <strong>NOT</strong> a medical device, diagnostic tool, or healthcare application.</p>
 
         <h3>Critical Understanding:</h3>
         <ul>
diff --git a/app/components/LLMChatInline.tsx b/app/components/LLMChatInline.tsx
@@ -852,7 +852,7 @@ Remember: You have plenty of space. Use ALL of it to provide a complete, thoroug
           </div>
           ${chatContent}
           <div style="margin-top: 3rem; padding-top: 1rem; border-top: 2px solid #ddd; color: #666; font-size: 0.9rem; text-align: center;">
-            Generated by GWASifier • For Educational Purposes Only
+            Generated by Monadic DNA Explorer • For Educational Purposes Only
           </div>
         </body>
       </html>
diff --git a/app/components/NillionModal.tsx b/app/components/NillionModal.tsx
@@ -190,7 +190,7 @@ export default function NillionModal({ isOpen, onClose }: NillionModalProps) {
     setProcessingSteps([
       { step: 'Searching genetic database for risk-related traits', status: 'active' },
       { step: 'Matching studies with your genetic profile', status: 'pending' },
-      { step: 'Analyzing genetic risk factors with AI', status: 'pending' },
+      { step: 'Analyzing genetic risk factors with nilAI', status: 'pending' },
       { step: 'Storing results securely in nilDB', status: 'pending' },
       { step: 'Generating your degen score', status: 'pending' }
     ]);
@@ -269,15 +269,15 @@ Provide:
 2. Brief, balanced trading behavior advice (1-2 sentences) considering this genetic profile
 
 Respond ONLY with JSON:
-{"geneticScore": 7.5, "reasoning": "detailed explanation", "tradingAdvice": "brief advice"}`;
+{"geneticScore": x, "reasoning": "detailed explanation", "tradingAdvice": "brief advice"}`;
 
       const llmResponse = await callLLM([
         { role: 'system', content: 'You are a genetics specialist.' },
         { role: 'user', content: prompt }
       ], {
-        maxTokens: 500,
+        maxTokens: 10000,
         temperature: 0.7,
-        reasoningEffort: 'low'
+        reasoningEffort: 'high'
       });
 
       // Parse LLM response
@@ -401,7 +401,11 @@ Respond ONLY with JSON:
                     </p>
                     <p>
                       Answer a few questions about your trading behavior, then we'll calculate
-                      your degen score based on your genetic traits related to risk appetite.
+                      your degen score using nilAI based on your genetic traits related to risk appetite.
+                    </p>
+                    <p>
+                      Your responses will be stored securely in nilDB and we'll publish an analysis
+                      of the delta between self-reported and genetically-derived degen scores.
                     </p>
                   </div>
 
diff --git a/app/components/OverviewReportModal.tsx b/app/components/OverviewReportModal.tsx
@@ -764,7 +764,7 @@ export default function OverviewReportModal({ isOpen, onClose }: OverviewReportM
                 fontSize: '0.9rem',
                 textAlign: 'center'
               }}>
-                Generated by GWASifier • For Educational Purposes Only
+                Generated by Monadic DNA Explorer • For Educational Purposes Only
               </div>
             </div>
           ) : (
diff --git a/app/components/TermsAcceptanceModal.tsx b/app/components/TermsAcceptanceModal.tsx
@@ -47,7 +47,7 @@ export default function TermsAcceptanceModal({ isOpen, onAccept }: TermsAcceptan
               <p>
                 Please read our full{" "}
                 <a
-                  href="https://github.com/Monadic-DNA/GWASifier/blob/main/terms_and_conditions.md"
+                  href="https://github.com/Monadic-DNA/Explorer/blob/main/terms_and_conditions.md"
                   target="_blank"
                   rel="noopener noreferrer"
                   className="terms-link"
@@ -56,7 +56,7 @@ export default function TermsAcceptanceModal({ isOpen, onAccept }: TermsAcceptan
                 </a>
                 {" "}and{" "}
                 <a
-                  href="https://github.com/Monadic-DNA/GWASifier/blob/main/privacy_policy.md"
+                  href="https://github.com/Monadic-DNA/Explorer/blob/main/privacy_policy.md"
                   target="_blank"
                   rel="noopener noreferrer"
                   className="terms-link"
diff --git a/lib/dev-mode.ts b/lib/dev-mode.ts
@@ -12,7 +12,7 @@
  * This should NEVER be enabled in production.
  */
 
-const DB_NAME = 'gwasifier_dev_mode';
+const DB_NAME = 'monadic_dna_explorer_dev_mode';
 const DB_VERSION = 1;
 const STORE_NAME = 'file_handles';
 const GENOTYPE_HANDLE_KEY = 'genotype_file_handle';
diff --git a/lib/llm-config.ts b/lib/llm-config.ts
@@ -16,7 +16,7 @@ export interface LLMConfig {
   huggingfaceApiKey?: string;
 }
 
-const STORAGE_KEY = 'gwasifier_llm_config';
+const STORAGE_KEY = 'monadic_dna_explorer_llm_config';
 
 const DEFAULT_CONFIG: LLMConfig = {
   provider: 'nilai',
diff --git a/package-lock.json b/package-lock.json
diff --git a/package.json b/package.json
@@ -1,5 +1,5 @@
 {
-  "name": "gwasifier",
+  "name": "Monadic DNA Explorer",
   "version": "1.0.0",
   "description": "Match your DNA data against an open ended catalogue of DNA traits",
   "type": "module",
diff --git a/sql/README.md b/sql/README.md
@@ -1,6 +1,6 @@
-# Database Index Optimization for GWASifier
+# Database Index Optimization for Monadic DNA Explorer
 
-This directory contains SQL files to optimize database performance for the GWAS Catalog data used by GWASifier.
+This directory contains SQL files to optimize database performance for the GWAS Catalog data used by Monadic DNA Explorer.
 
 ## Files
 
@@ -9,7 +9,7 @@ This directory contains SQL files to optimize database performance for the GWAS
 
 ## Performance Impact
 
-These indexes are designed to optimize the most common query patterns in GWASifier:
+These indexes are designed to optimize the most common query patterns in Monadic DNA Explorer:
 
 1. **Text searches** across studies, traits, authors, and genes
 2. **P-value filtering** for statistical significance
diff --git a/sql/postgres_indexes.sql b/sql/postgres_indexes.sql
@@ -1,5 +1,5 @@
 -- PostgreSQL Index Optimization for GWAS Catalog
--- These indexes optimize the common query patterns used by GWASifier
+-- These indexes optimize the common query patterns used by Monadic DNA Explorer
 --
 -- Performance note: Run these after loading your data for optimal performance
 -- Consider running VACUUM ANALYZE after creating indexes
diff --git a/sql/postgres_schema.sql b/sql/postgres_schema.sql
@@ -1,4 +1,4 @@
--- GWASifier Database Schema - PostgreSQL
+-- Monadic DNA Explorer Database Schema - PostgreSQL
 -- This is the complete schema including all tables and indexes
 
 -- ========================================

Original file line number	Diff line number	Diff line change
`@@ -16,7 +16,7 @@ export interface LLMConfig {`
`16`	`16`	`huggingfaceApiKey?: string;`
`17`	`17`	`}`
`18`	`18`
`19`		`-const STORAGE_KEY = 'gwasifier_llm_config';`
	`19`	`+const STORAGE_KEY = 'monadic_dna_explorer_llm_config';`
`20`	`20`
`21`	`21`	`const DEFAULT_CONFIG: LLMConfig = {`
`22`	`22`	`provider: 'nilai',`