mne-python/.github/workflows/linux_conda.yml at main · NeuroLaunch/mne-python · GitHub

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name: 'linux / conda'
concurrency:
  group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
  cancel-in-progress: true
on:
  push:
    branches:
      - '*'
  pull_request:
    branches:
      - '*'

jobs:
  py310:
    runs-on: ubuntu-20.04
    name: 'linux conda 3.10'
    defaults:
      run:
        shell: bash
    env:
      CONDA_ENV: 'environment.yml'
      DISPLAY: ':99.0'
      MNE_LOGGING_LEVEL: 'warning'
      MKL_NUM_THREADS: '1'
      PYTHONUNBUFFERED: '1'
      PYTHON_VERSION: '3.10'
    steps:
      - uses: actions/checkout@v3
      - run: ./tools/setup_xvfb.sh
        name: 'Setup xvfb'
      - uses: conda-incubator/setup-miniconda@v2
        with:
          activate-environment: 'mne'
          python-version: ${{ env.PYTHON_VERSION }}
          environment-file: ${{ env.CONDA_ENV }}
        name: 'Setup conda'
      - shell: bash -el {0}
        run: |
          ./tools/github_actions_dependencies.sh
          source tools/get_minimal_commands.sh
        name: 'Install dependencies'
      - shell: bash -el {0}
        run: mne_surf2bem --version
        name: 'Check minimal commands'
      - shell: bash -el {0}
        run: ./tools/github_actions_install.sh
        name: 'Install MNE'
      - shell: bash -el {0}
        run: |
          QT_QPA_PLATFORM=xcb LIBGL_DEBUG=verbose LD_DEBUG=libs python -c "import pyvistaqt; pyvistaqt.BackgroundPlotter(show=True)"
        name: 'Check Qt GL'
      - shell: bash -el {0}
        run: ./tools/github_actions_infos.sh
        name: 'Show infos'
      - shell: bash -el {0}
        run: ./tools/get_testing_version.sh
        name: 'Get testing version'
      - uses: actions/cache@v3
        with:
          key: ${{ env.TESTING_VERSION }}
          path: ~/mne_data
        name: 'Cache testing data'
      - shell: bash -el {0}
        run: ./tools/github_actions_download.sh
        name: 'Download testing data'
      - shell: bash -el {0}
        run: ./tools/github_actions_locale.sh
        name: 'Print locale'
      - shell: bash -el {0}
        run: ./tools/github_actions_test.sh
        name: 'Run tests'
      - uses: codecov/codecov-action@v3
        if: success()
        name: 'Upload coverage to CodeCov'

  notebook:
    timeout-minutes: 90
    runs-on: ubuntu-20.04
    defaults:
      run:
        shell: bash
    env:
      CONDA_ENV: 'server_environment.yml'
      PYTHON_VERSION: '3.8'
    steps:
      - uses: actions/checkout@v3
      - uses: conda-incubator/setup-miniconda@v2
        with:
          activate-environment: 'mne'
          python-version: ${{ env.PYTHON_VERSION }}
          environment-file: ${{ env.CONDA_ENV }}
        name: 'Setup conda'
      - shell: bash -el {0}
        run: |
          pip uninstall -yq mne
          pip install --progress-bar off -ve .[test]
        name: 'Install dependencies'
      - shell: bash -el {0}
        run: ./tools/github_actions_infos.sh
        name: 'Show infos'
      - shell: bash -el {0}
        run: ./tools/get_testing_version.sh
        name: 'Get testing version'
      - uses: actions/cache@v3
        with:
          key: ${{ env.TESTING_VERSION }}
          path: ~/mne_data
        name: 'Cache testing data'
      - shell: bash -el {0}
        run: ./tools/github_actions_download.sh
        name: 'Download testing data'
      - shell: bash -el {0}
        run: pytest --tb=short -m "not pgtest" --cov=mne --cov-report=xml --cov-report=html -vv mne/viz
        name: 'Run viz tests'
      - uses: codecov/codecov-action@v3
        if: success()
        name: 'Upload coverage to CodeCov'