Hello,
Thank you very much for providing the tool, it has been extremely helpful.
I wanted to ask whether there are plans for a new version of makeIndexFqs.py that would allow generating index files for ScalePlex.fastq.I am currently facing an issue where I only have the R1 and R2 files. I am able to generate the index files for ScaleRNA using the Python pipeline, but I cannot do the same for ScalePlex, and I need these index files for my analysis.
Could you please let me know if an updated version is available or planned?
Thank you in advance for your help.
Best regards,
EA