From 719320c0a5fd5e55b025a8726f924e81955ee97d Mon Sep 17 00:00:00 2001 From: Martin Yeo Date: Tue, 25 Nov 2025 17:30:21 +0000 Subject: [PATCH 01/14] matplotlib/matplotlib#30198: Python 3.14 compatible deepcopy. --- lib/iris/coords.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/lib/iris/coords.py b/lib/iris/coords.py index d6d0262760..c0fa2a07a4 100644 --- a/lib/iris/coords.py +++ b/lib/iris/coords.py @@ -2800,7 +2800,13 @@ def __deepcopy__(self, memo): # numpydoc ignore=SS02 Used if copy.deepcopy is called on a coordinate. """ - new_coord = copy.deepcopy(super(), memo) + # Inspired by matplotlib#30198. + # Replicates the default copy behaviour, which can then be modified below. + cls = self.__class__ + memo[id(self)] = new_coord = cls.__new__(cls) + for key, val in self.__dict__.items(): + setattr(new_coord, key, copy.deepcopy(val, memo)) + # Ensure points and bounds arrays are read-only. new_coord._values_dm.data.flags.writeable = False if new_coord._bounds_dm is not None: From 43a86d999319353b2a32902e0a723dc095da64ad Mon Sep 17 00:00:00 2001 From: Martin Yeo Date: Tue, 25 Nov 2025 17:35:43 +0000 Subject: [PATCH 02/14] Remove Python 3.14 pin. --- pyproject.toml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 02036fb046..ae99aaa554 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -50,9 +50,7 @@ keywords = [ license = "BSD-3-Clause" license-files = ["LICENSE"] name = "scitools-iris" -# NOTE: currently pinning to avoid Python 3.14 -# see : https://github.com/SciTools/iris/issues/6775 -requires-python = ">=3.11,<3.14" +requires-python = ">=3.11" [project.urls] Code = "https://github.com/SciTools/iris" From c2cf592e4f79fc12552641d99e7ea750e087fc06 Mon Sep 17 00:00:00 2001 From: Martin Yeo Date: Tue, 25 Nov 2025 17:48:28 +0000 Subject: [PATCH 03/14] Support Python 3.14. --- .github/workflows/ci-tests.yml | 7 ++- .github/workflows/ci-wheels.yml | 2 +- benchmarks/bm_runner.py | 2 +- lib/iris/tests/test_coding_standards.py | 4 +- noxfile.py | 2 +- pyproject.toml | 1 + requirements/py314.yml | 63 +++++++++++++++++++++++++ 7 files changed, 74 insertions(+), 7 deletions(-) create mode 100644 requirements/py314.yml diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml index 5df55143bd..4cfc89d23f 100644 --- a/.github/workflows/ci-tests.yml +++ b/.github/workflows/ci-tests.yml @@ -35,13 +35,16 @@ jobs: fail-fast: false matrix: os: ["ubuntu-latest"] - python-version: ["3.13"] + python-version: ["3.14"] session: ["doctest", "gallery"] include: - os: "ubuntu-latest" - python-version: "3.13" + python-version: "3.14" session: "tests" coverage: "--coverage" + - os: "ubuntu-latest" + python-version: "3.13" + session: "tests" - os: "ubuntu-latest" python-version: "3.12" session: "tests" diff --git a/.github/workflows/ci-wheels.yml b/.github/workflows/ci-wheels.yml index 7d7eea830b..943a79e705 100644 --- a/.github/workflows/ci-wheels.yml +++ b/.github/workflows/ci-wheels.yml @@ -52,7 +52,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.11", "3.12", "3.13"] + python-version: ["3.11", "3.12", "3.13", "3.14"] session: ["wheel"] env: ENV_NAME: "ci-wheels" diff --git a/benchmarks/bm_runner.py b/benchmarks/bm_runner.py index dc2e174f52..df14fe7393 100755 --- a/benchmarks/bm_runner.py +++ b/benchmarks/bm_runner.py @@ -67,7 +67,7 @@ def _check_requirements(package: str) -> None: def _prep_data_gen_env() -> None: """Create or access a separate, unchanging environment for generating test data.""" - python_version = "3.13" + python_version = "3.14" data_gen_var = "DATA_GEN_PYTHON" if data_gen_var in environ: echo("Using existing data generation environment.") diff --git a/lib/iris/tests/test_coding_standards.py b/lib/iris/tests/test_coding_standards.py index f51a531721..f70a59a1ee 100644 --- a/lib/iris/tests/test_coding_standards.py +++ b/lib/iris/tests/test_coding_standards.py @@ -70,8 +70,8 @@ def test_python_versions(): Test is designed to fail whenever Iris' supported Python versions are updated, insisting that versions are updated EVERYWHERE in-sync. """ - latest_supported = "3.13" - all_supported = ["3.11", "3.12", latest_supported] + latest_supported = "3.14" + all_supported = ["3.11", "3.12", "3.13", latest_supported] root_dir = Path(__file__).parents[3] workflows_dir = root_dir / ".github" / "workflows" diff --git a/noxfile.py b/noxfile.py index 415e4fc3d5..ceca53c7a5 100644 --- a/noxfile.py +++ b/noxfile.py @@ -15,7 +15,7 @@ nox.options.reuse_existing_virtualenvs = True #: Python versions we can run sessions under -_PY_VERSIONS_ALL = ["3.11", "3.12", "3.13"] +_PY_VERSIONS_ALL = ["3.11", "3.12", "3.13", "3.14"] _PY_VERSION_LATEST = _PY_VERSIONS_ALL[-1] #: One specific python version for docs builds diff --git a/pyproject.toml b/pyproject.toml index ae99aaa554..888ed66f16 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,6 +24,7 @@ classifiers = [ "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", "Programming Language :: Python :: 3.13", + "Programming Language :: Python :: 3.14", "Programming Language :: Python :: Implementation :: CPython", "Topic :: Scientific/Engineering", "Topic :: Scientific/Engineering :: Atmospheric Science", diff --git a/requirements/py314.yml b/requirements/py314.yml new file mode 100644 index 0000000000..54cc37058d --- /dev/null +++ b/requirements/py314.yml @@ -0,0 +1,63 @@ +name: iris-dev + +channels: + - conda-forge + +dependencies: + - python =3.14 + +# Setup dependencies. + - setuptools >=77.0.3 + - setuptools-scm >=8 + +# Core dependencies. + - cartopy >=0.21 + - cf-units >=3.1 + - cftime >=1.5 + - dask-core >=2025.1.0,<2025.10.0 # https://github.com/SciTools/iris/issues/6776 + - libnetcdf !=4.9.1 + - matplotlib-base >=3.5, !=3.9.1 + - netcdf4<1.7.3 # https://github.com/SciTools/iris/issues/6777 + - numpy >=1.24, !=1.24.3 + - python-xxhash + - pyproj + - scipy + - shapely !=1.8.3 + +# Optional dependencies. + - esmpy >=7.0 + - geovista + - graphviz + - iris-sample-data >=2.4.0 + - mo_pack + - nc-time-axis >=1.4 + - pandas + - pip + - python-stratify + - rasterio + - affine + +# Test dependencies. + - asv_runner + - distributed + - filelock + - imagehash >=4.0 + - pre-commit + - psutil + - pytest + - pytest-cov + - pytest-mock + - pytest-xdist + - requests + +# Documentation dependencies. + - sphinx <8.2 + - sphinxcontrib-apidoc + - sphinx-copybutton + - sphinx-gallery >=0.11.0 + - sphinx-design + - pydata-sphinx-theme >=0.13.0 + +# Temporary minimum pins. +# See https://github.com/SciTools/iris/pull/5051 + - graphviz >=6.0.0 From b9664a988af4c40746c062d1a006ed37555ff115 Mon Sep 17 00:00:00 2001 From: Martin Yeo Date: Tue, 25 Nov 2025 18:00:39 +0000 Subject: [PATCH 04/14] Fix dumb versioning in test_python_versions. --- lib/iris/tests/test_coding_standards.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/lib/iris/tests/test_coding_standards.py b/lib/iris/tests/test_coding_standards.py index f70a59a1ee..831e8a2864 100644 --- a/lib/iris/tests/test_coding_standards.py +++ b/lib/iris/tests/test_coding_standards.py @@ -12,6 +12,7 @@ import subprocess from typing import List, Tuple +from packaging.version import Version import pytest import iris @@ -70,8 +71,9 @@ def test_python_versions(): Test is designed to fail whenever Iris' supported Python versions are updated, insisting that versions are updated EVERYWHERE in-sync. """ - latest_supported = "3.14" - all_supported = ["3.11", "3.12", "3.13", latest_supported] + all_supported = ["3.11", "3.12", "3.13", "3.14"] + _parsed = [Version(v) for v in all_supported] + latest_supported = str(max(_parsed)) root_dir = Path(__file__).parents[3] workflows_dir = root_dir / ".github" / "workflows" From 68845f588902a7bc5469bf938321b7b85951cb5d Mon Sep 17 00:00:00 2001 From: Martin Yeo Date: Tue, 25 Nov 2025 17:54:28 +0000 Subject: [PATCH 05/14] Drop support for Python 3.11. --- .github/workflows/ci-tests.yml | 3 -- .github/workflows/ci-wheels.yml | 2 +- lib/iris/tests/test_coding_standards.py | 2 +- noxfile.py | 2 +- pyproject.toml | 3 +- requirements/py311.yml | 63 ------------------------- 6 files changed, 4 insertions(+), 71 deletions(-) delete mode 100644 requirements/py311.yml diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml index 4cfc89d23f..9fd5300974 100644 --- a/.github/workflows/ci-tests.yml +++ b/.github/workflows/ci-tests.yml @@ -48,9 +48,6 @@ jobs: - os: "ubuntu-latest" python-version: "3.12" session: "tests" - - os: "ubuntu-latest" - python-version: "3.11" - session: "tests" env: # NOTE: IRIS_TEST_DATA_VERSION is also set in benchmarks_run.yml diff --git a/.github/workflows/ci-wheels.yml b/.github/workflows/ci-wheels.yml index 943a79e705..e2210d017a 100644 --- a/.github/workflows/ci-wheels.yml +++ b/.github/workflows/ci-wheels.yml @@ -52,7 +52,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.11", "3.12", "3.13", "3.14"] + python-version: ["3.12", "3.13", "3.14"] session: ["wheel"] env: ENV_NAME: "ci-wheels" diff --git a/lib/iris/tests/test_coding_standards.py b/lib/iris/tests/test_coding_standards.py index 831e8a2864..59c1b40baf 100644 --- a/lib/iris/tests/test_coding_standards.py +++ b/lib/iris/tests/test_coding_standards.py @@ -71,7 +71,7 @@ def test_python_versions(): Test is designed to fail whenever Iris' supported Python versions are updated, insisting that versions are updated EVERYWHERE in-sync. """ - all_supported = ["3.11", "3.12", "3.13", "3.14"] + all_supported = ["3.12", "3.13", "3.14"] _parsed = [Version(v) for v in all_supported] latest_supported = str(max(_parsed)) diff --git a/noxfile.py b/noxfile.py index ceca53c7a5..4d733fa2d4 100644 --- a/noxfile.py +++ b/noxfile.py @@ -15,7 +15,7 @@ nox.options.reuse_existing_virtualenvs = True #: Python versions we can run sessions under -_PY_VERSIONS_ALL = ["3.11", "3.12", "3.13", "3.14"] +_PY_VERSIONS_ALL = ["3.12", "3.13", "3.14"] _PY_VERSION_LATEST = _PY_VERSIONS_ALL[-1] #: One specific python version for docs builds diff --git a/pyproject.toml b/pyproject.toml index 888ed66f16..f71afc7548 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -21,7 +21,6 @@ classifiers = [ "Operating System :: Unix", "Programming Language :: Python", "Programming Language :: Python :: 3 :: Only", - "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", "Programming Language :: Python :: 3.13", "Programming Language :: Python :: 3.14", @@ -51,7 +50,7 @@ keywords = [ license = "BSD-3-Clause" license-files = ["LICENSE"] name = "scitools-iris" -requires-python = ">=3.11" +requires-python = ">=3.12" [project.urls] Code = "https://github.com/SciTools/iris" diff --git a/requirements/py311.yml b/requirements/py311.yml deleted file mode 100644 index ce3ebebad4..0000000000 --- a/requirements/py311.yml +++ /dev/null @@ -1,63 +0,0 @@ -name: iris-dev - -channels: - - conda-forge - -dependencies: - - python =3.11 - -# Setup dependencies. - - setuptools >=77.0.3 - - setuptools-scm >=8 - -# Core dependencies. - - cartopy >=0.21 - - cf-units >=3.1 - - cftime >=1.5 - - dask-core >=2025.1.0,<2025.10.0 # https://github.com/SciTools/iris/issues/6776 - - libnetcdf !=4.9.1 - - matplotlib-base >=3.5, !=3.9.1 - - netcdf4<1.7.3 # https://github.com/SciTools/iris/issues/6777 - - numpy >=1.24, !=1.24.3 - - python-xxhash - - pyproj - - scipy - - shapely !=1.8.3 - -# Optional dependencies. - - esmpy >=7.0 - - geovista - - graphviz - - iris-sample-data >=2.4.0 - - mo_pack - - nc-time-axis >=1.4 - - pandas - - pip - - python-stratify - - rasterio - - affine - -# Test dependencies. - - asv_runner - - distributed - - filelock - - imagehash >=4.0 - - pre-commit - - psutil - - pytest - - pytest-cov - - pytest-mock - - pytest-xdist - - requests - -# Documentation dependencies. - - sphinx <8.2 - - sphinxcontrib-apidoc - - sphinx-copybutton - - sphinx-gallery >=0.11.0 - - sphinx-design - - pydata-sphinx-theme >=0.13.0 - -# Temporary minimum pins. -# See https://github.com/SciTools/iris/pull/5051 - - graphviz >=6.0.0 From 6bf956bf27c62d2e9ecc3e8e6b5252560b083236 Mon Sep 17 00:00:00 2001 From: Martin Yeo Date: Tue, 25 Nov 2025 18:27:59 +0000 Subject: [PATCH 06/14] Update lock-files. --- requirements/locks/py312-linux-64.lock | 71 +++--- requirements/locks/py313-linux-64.lock | 71 +++--- requirements/locks/py314-linux-64.lock | 336 +++++++++++++++++++++++++ 3 files changed, 408 insertions(+), 70 deletions(-) create mode 100644 requirements/locks/py314-linux-64.lock diff --git a/requirements/locks/py312-linux-64.lock b/requirements/locks/py312-linux-64.lock index 76637c43d0..20c8b369d8 100644 --- a/requirements/locks/py312-linux-64.lock +++ b/requirements/locks/py312-linux-64.lock @@ -15,12 +15,12 @@ https://conda.anaconda.org/conda-forge/linux-64/utfcpp-4.0.8-ha770c72_0.conda#a4 https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.11.12-hbd8a1cb_0.conda#f0991f0f84902f6b6009b4d2350a83aa https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-hc364b38_1.conda#a7970cd949a077b7cb9696379d338681 https://conda.anaconda.org/conda-forge/linux-64/libglvnd-1.7.0-ha4b6fd6_2.conda#434ca7e50e40f4918ab701e3facd59a0 -https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-h767d61c_7.conda#f7b4d76975aac7e5d9e6ad13845f92fe +https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_12.conda#4881b9b732ee8b673cd46875d7d36fc6 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2#fee5683a3f04bd15cbd8318b096a27ab https://conda.anaconda.org/conda-forge/linux-64/libegl-1.7.0-ha4b6fd6_2.conda#c151d5eb730e9b7480e6d48c0fc44048 https://conda.anaconda.org/conda-forge/linux-64/libopengl-1.7.0-ha4b6fd6_2.conda#7df50d44d4a14d6c31a2c54f2cd92157 -https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-h767d61c_7.conda#c0374badb3a5d4b1372db28d19462c53 +https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_12.conda#b3137606149c607becd89faed5ee4ec6 https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.14-hb9d3cd8_0.conda#76df83c2a9035c54df5d04ff81bcc02d https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.2-h39aace5_0.conda#791365c5f65975051e4e017b5da3abf5 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda#51a19bba1b8ebfb60df25cde030b7ebc @@ -28,12 +28,12 @@ https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.5-hb9d3cd8_0.conda#f https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.16-hb03c661_0.conda#f9f81ea472684d75b9dd8d0b328cf655 https://conda.anaconda.org/conda-forge/linux-64/json-c-0.18-h6688a6e_0.conda#38f5dbc9ac808e31c00650f7be1db93f https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.3-hb9d3cd8_0.conda#b38117a3c920364aff79f870c984b4a3 -https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.2.0-h09219d5_0.conda#9b3117ec960b823815b02190b41c0484 +https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.2.0-hb03c661_1.conda#72c8fd1af66bd67bf580645b426513ed https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda#6c77a605a7a689d17d4819c0f8ac9a00 -https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.7.1-hecca717_0.conda#4211416ecba1866fab0c6470986c22d6 +https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.7.3-hecca717_0.conda#8b09ae86839581147ef2e5c5e229d164 https://conda.anaconda.org/conda-forge/linux-64/libffi-3.5.2-h9ec8514_0.conda#35f29eec58405aaf55e01cb470d8c26a -https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_7.conda#280ea6eee9e2ddefde25ff799c4f0363 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-15.2.0-hcd61629_7.conda#f116940d825ffc9104400f0d7f1a4551 +https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_12.conda#3c4b621138fcfc95ba219344b8a0d91f +https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-15.2.0-h68bc16d_12.conda#3df163304a1e1f6796b6d1d28ed9bdd3 https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.18-h3b78370_2.conda#915f5995e94f60e9a4826e0b0920ee88 https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.1.2-hb03c661_0.conda#8397539e3a0bbd1695584fb4f927485a https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc @@ -41,7 +41,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d8 https://conda.anaconda.org/conda-forge/linux-64/libntlm-1.8-hb9d3cd8_0.conda#7c7927b404672409d9917d49bff5f2d6 https://conda.anaconda.org/conda-forge/linux-64/libogg-1.3.5-hd0c01bc_1.conda#68e52064ed3897463c0e958ab5c8f91b https://conda.anaconda.org/conda-forge/linux-64/libpciaccess-0.18-hb9d3cd8_0.conda#70e3400cbbfa03e96dcde7fc13e38c7b -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h8f9b012_7.conda#5b767048b1b3ee9a954b06f4084f93dc +https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_12.conda#b8ef46cab65ab6676c7d5c9581b17ebf 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index 6a56e09db4..4ac6f3b36e 100644 --- a/lib/iris/tests/integration/experimental/geovista/__init__.py +++ b/lib/iris/tests/integration/experimental/geovista/__init__.py @@ -3,3 +3,11 @@ # This file is part of Iris and is released under the BSD license. # See LICENSE in the root of the repository for full licensing details. """Integration tests for the :mod:`iris.experimental.geovista` module.""" + +import pytest + +# Skip this whole package if geovista (and by extension pyvista) is not available: +pytest.importorskip( + "geovista", + reason="Skipping geovista integration tests as `geovista` is not installed", +) diff --git a/lib/iris/tests/unit/experimental/geovista/__init__.py b/lib/iris/tests/unit/experimental/geovista/__init__.py index b2024ce97d..731c8736ad 100644 --- a/lib/iris/tests/unit/experimental/geovista/__init__.py +++ b/lib/iris/tests/unit/experimental/geovista/__init__.py @@ -3,3 +3,10 @@ # This file is part of Iris and is released under the BSD license. # See LICENSE in the root of the repository for full licensing details. """Unit tests for the :mod:`iris.experimental.geovista` module.""" + +import pytest + +# Skip this whole package if geovista (and by extension pyvista) is not available: +pytest.importorskip( + "geovista", reason="Skipping geovista unit tests as `geovista` is not installed" +) diff --git a/requirements/py314.yml b/requirements/py314.yml index 9c2d6847e9..aeec396de4 100644 --- a/requirements/py314.yml +++ b/requirements/py314.yml @@ -26,7 +26,7 @@ dependencies: # Optional dependencies. - esmpy >=7.0 - - geovista +# - geovista # Temporarily removed until pyvista is py3.14 compatible. - graphviz - iris-sample-data >=2.4.0 - mo_pack From 3149e88b996373702940cfed72633654bd8209fd Mon Sep 17 00:00:00 2001 From: ukmo-ccbunney Date: Wed, 14 Jan 2026 15:49:17 +0000 Subject: [PATCH 08/14] Refreshed lockfiles (no geovista in py314 lock) --- requirements/locks/py312-linux-64.lock | 666 +++++++++++++------------ requirements/locks/py313-linux-64.lock | 664 ++++++++++++------------ 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+https://conda.anaconda.org/conda-forge/noarch/adwaita-icon-theme-49.0-unix_0.conda#b3f0179590f3c0637b7eb5309898f79e +https://conda.anaconda.org/conda-forge/linux-64/graphviz-14.1.0-h8b86629_0.conda#39dcf8bb370df27fd81dbe41d4cb605e +https://conda.anaconda.org/conda-forge/noarch/pydata-sphinx-theme-0.16.1-pyhd8ed1ab_0.conda#837aaf71ddf3b27acae0e7e9015eebc6 +https://conda.anaconda.org/conda-forge/noarch/sphinx-copybutton-0.5.2-pyhd8ed1ab_1.conda#bf22cb9c439572760316ce0748af3713 +https://conda.anaconda.org/conda-forge/noarch/sphinx-design-0.6.1-pyhd8ed1ab_2.conda#3e6c15d914b03f83fc96344f917e0838 +https://conda.anaconda.org/conda-forge/noarch/sphinx-gallery-0.20.0-pyhd8ed1ab_0.conda#4cae490c8d142824fb80d9aed672fddd +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-applehelp-2.0.0-pyhd8ed1ab_1.conda#16e3f039c0aa6446513e94ab18a8784b +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-devhelp-2.0.0-pyhd8ed1ab_1.conda#910f28a05c178feba832f842155cbfff +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-htmlhelp-2.1.0-pyhd8ed1ab_1.conda#e9fb3fe8a5b758b4aff187d434f94f03 +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-2.0.0-pyhd8ed1ab_1.conda#00534ebcc0375929b45c3039b5ba7636 +https://conda.anaconda.org/conda-forge/noarch/sphinx-8.1.3-pyhd8ed1ab_1.conda#1a3281a0dc355c02b5506d87db2d78ac +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_1.conda#3bc61f7161d28137797e038263c04c54 From da2617f7f322f91a975f8d7a17d62e5a70fc9fa1 Mon Sep 17 00:00:00 2001 From: ukmo-ccbunney Date: Fri, 16 Jan 2026 14:03:40 +0000 Subject: [PATCH 10/14] Added optional skips for doctests --- docs/src/conf.py | 19 +- docs/src/further_topics/ugrid/operations.rst | 2 +- lib/iris/experimental/geovista.py | 193 +++++++++++-------- 3 files changed, 129 insertions(+), 85 deletions(-) diff --git a/docs/src/conf.py b/docs/src/conf.py index fa896aba69..416798dbaa 100644 --- a/docs/src/conf.py +++ b/docs/src/conf.py @@ -20,6 +20,7 @@ """Config for sphinx.""" import datetime +import importlib from importlib.metadata import version as get_version from inspect import getsource import ntpath @@ -219,6 +220,14 @@ def _dotv(version): autoclass_content = "both" modindex_common_prefix = ["iris"] +# if geovista is not installed we need to mock the imports so the autodoc build works: +# try: +# import geovista # noqa: F401 +# except ImportError: +if importlib.util.find_spec("geovista") is None: + autodoc_mock_imports = ["geovista", "pyvista"] + + # -- apidoc extension --------------------------------------------------------- # See https://github.com/sphinx-contrib/apidoc source_code_root = (Path(__file__).parents[2]).absolute() @@ -283,7 +292,15 @@ def _dotv(version): # -- Doctest ("make doctest")-------------------------------------------------- -doctest_global_setup = "import iris" +doctest_global_setup = """ +import iris + +# To handle conditional doctest skipping if geovista is not installed: +try: + import geovista as gv +except ImportError: + gv = None +""" # -- Options for HTML output -------------------------------------------------- diff --git a/docs/src/further_topics/ugrid/operations.rst b/docs/src/further_topics/ugrid/operations.rst index 14e746352f..542b748d2a 100644 --- a/docs/src/further_topics/ugrid/operations.rst +++ b/docs/src/further_topics/ugrid/operations.rst @@ -583,8 +583,8 @@ below: :icon: code .. doctest:: ugrid_operations + :skipif: gv is None - >>> from geovista.geodesic import BBox >>> from iris import load_cube, sample_data_path >>> from iris.experimental.geovista import cube_to_polydata, extract_unstructured_region diff --git a/lib/iris/experimental/geovista.py b/lib/iris/experimental/geovista.py index 57cbded2c2..a8e2c25c5d 100644 --- a/lib/iris/experimental/geovista.py +++ b/lib/iris/experimental/geovista.py @@ -64,64 +64,79 @@ def cube_to_polydata(cube, **kwargs): cube_w_time = load_cube(sample_data_path("A1B_north_america.nc")) cube_mesh = load_cube(sample_data_path("mesh_C4_synthetic_float.nc")) - >>> from iris.experimental.geovista import cube_to_polydata + .. doctest:: + :skipif: gv is None + + >>> from iris.experimental.geovista import cube_to_polydata Converting a standard 2-dimensional :class:`~iris.cube.Cube` with 1-dimensional coordinates: - >>> print(cube.summary(shorten=True)) - air_temperature / (K) (latitude: 73; longitude: 96) - >>> print(cube_to_polydata(cube)) - PolyData (... - N Cells: 7008 - N Points: 7178 - N Strips: 0 - X Bounds: -9.992e-01, 9.992e-01 - Y Bounds: -9.992e-01, 9.992e-01 - Z Bounds: -1.000e+00, 1.000e+00 - N Arrays: 4 + .. doctest:: + :skipif: gv is None + + >>> print(cube.summary(shorten=True)) + air_temperature / (K) (latitude: 73; longitude: 96) + >>> print(cube_to_polydata(cube)) + PolyData (... + N Cells: 7008 + N Points: 7178 + N Strips: 0 + X Bounds: -9.992e-01, 9.992e-01 + Y Bounds: -9.992e-01, 9.992e-01 + Z Bounds: -1.000e+00, 1.000e+00 + N Arrays: 4 Configure the conversion by passing additional keyword arguments: - >>> print(cube_to_polydata(cube, radius=2)) - PolyData (... - N Cells: 7008 - N Points: 7178 - N Strips: 0 - X Bounds: -1.998e+00, 1.998e+00 - Y Bounds: -1.998e+00, 1.998e+00 - Z Bounds: -2.000e+00, 2.000e+00 - N Arrays: 4 + .. doctest:: + :skipif: gv is None + + >>> print(cube_to_polydata(cube, radius=2)) + PolyData (... + N Cells: 7008 + N Points: 7178 + N Strips: 0 + X Bounds: -1.998e+00, 1.998e+00 + Y Bounds: -1.998e+00, 1.998e+00 + Z Bounds: -2.000e+00, 2.000e+00 + N Arrays: 4 Converting a :class:`~iris.cube.Cube` that has a :attr:`~iris.cube.Cube.mesh` describing its horizontal space: - >>> print(cube_mesh.summary(shorten=True)) - synthetic / (1) (-- : 96) - >>> print(cube_to_polydata(cube_mesh)) - PolyData (... - N Cells: 96 - N Points: 98 - N Strips: 0 - X Bounds: -1.000e+00, 1.000e+00 - Y Bounds: -1.000e+00, 1.000e+00 - Z Bounds: -1.000e+00, 1.000e+00 - N Arrays: 4 + .. doctest:: + :skipif: gv is None + + >>> print(cube_mesh.summary(shorten=True)) + synthetic / (1) (-- : 96) + >>> print(cube_to_polydata(cube_mesh)) + PolyData (... + N Cells: 96 + N Points: 98 + N Strips: 0 + X Bounds: -1.000e+00, 1.000e+00 + Y Bounds: -1.000e+00, 1.000e+00 + Z Bounds: -1.000e+00, 1.000e+00 + N Arrays: 4 Remember to reduce the dimensionality of your :class:`~iris.cube.Cube` to just be the horizontal space: - >>> print(cube_w_time.summary(shorten=True)) - air_temperature / (K) (time: 240; latitude: 37; longitude: 49) - >>> print(cube_to_polydata(cube_w_time[0, :, :])) - PolyData (... - N Cells: 1813 - N Points: 1900 - N Strips: 0 - X Bounds: -6.961e-01, 6.961e-01 - Y Bounds: -9.686e-01, -3.411e-01 - Z Bounds: 2.483e-01, 8.714e-01 - N Arrays: 4 + .. doctest:: + :skipif: gv is None + + >>> print(cube_w_time.summary(shorten=True)) + air_temperature / (K) (time: 240; latitude: 37; longitude: 49) + >>> print(cube_to_polydata(cube_w_time[0, :, :])) + PolyData (... + N Cells: 1813 + N Points: 1900 + N Strips: 0 + X Bounds: -6.961e-01, 6.961e-01 + Y Bounds: -9.686e-01, -3.411e-01 + Z Bounds: 2.483e-01, 8.714e-01 + N Arrays: 4 """ if cube.mesh: @@ -227,57 +242,69 @@ def extract_unstructured_region(cube, polydata, region, **kwargs): The parameters of :func:`extract_unstructured_region` have been designed with flexibility and reuse in mind. This is demonstrated below. - >>> from geovista.geodesic import BBox - >>> from iris.experimental.geovista import cube_to_polydata, extract_unstructured_region - >>> print(cube_w_mesh.shape) - (72, 96) - >>> # The mesh dimension represents the horizontal space of the cube. - >>> print(cube_w_mesh.shape[cube_w_mesh.mesh_dim()]) - 96 - >>> cube_polydata = cube_to_polydata(cube_w_mesh[0, :]) - >>> extracted_cube = extract_unstructured_region( - ... cube=cube_w_mesh, - ... polydata=cube_polydata, - ... region=BBox(lons=[0, 70, 70, 0], lats=[-25, -25, 45, 45]), - ... ) - >>> print(extracted_cube.shape) - (72, 11) + .. doctest:: + :skipif: gv is None + + >>> from geovista.geodesic import BBox + >>> from iris.experimental.geovista import cube_to_polydata, extract_unstructured_region + >>> print(cube_w_mesh.shape) + (72, 96) + >>> # The mesh dimension represents the horizontal space of the cube. + >>> print(cube_w_mesh.shape[cube_w_mesh.mesh_dim()]) + 96 + >>> cube_polydata = cube_to_polydata(cube_w_mesh[0, :]) + >>> extracted_cube = extract_unstructured_region( + ... cube=cube_w_mesh, + ... polydata=cube_polydata, + ... region=BBox(lons=[0, 70, 70, 0], lats=[-25, -25, 45, 45]), + ... ) + >>> print(extracted_cube.shape) + (72, 11) Now reuse the same `cube` and `polydata` to extract a different region: - >>> new_region = BBox(lons=[0, 35, 35, 0], lats=[-25, -25, 45, 45]) - >>> extracted_cube = extract_unstructured_region( - ... cube=cube_w_mesh, - ... polydata=cube_polydata, - ... region=new_region, - ... ) - >>> print(extracted_cube.shape) - (72, 6) + .. doctest:: + :skipif: gv is None + + >>> new_region = BBox(lons=[0, 35, 35, 0], lats=[-25, -25, 45, 45]) + >>> extracted_cube = extract_unstructured_region( + ... cube=cube_w_mesh, + ... polydata=cube_polydata, + ... region=new_region, + ... ) + >>> print(extracted_cube.shape) + (72, 6) Now apply the same region extraction to a different `cube` that has the same horizontal shape: - >>> print(other_cube_w_mesh.shape) - (20, 96) - >>> extracted_cube = extract_unstructured_region( - ... cube=other_cube_w_mesh, - ... polydata=cube_polydata, - ... region=new_region, - ... ) - >>> print(extracted_cube.shape) - (20, 6) + .. doctest:: + :skipif: gv is None + + >>> print(other_cube_w_mesh.shape) + (20, 96) + >>> extracted_cube = extract_unstructured_region( + ... cube=other_cube_w_mesh, + ... polydata=cube_polydata, + ... region=new_region, + ... ) + >>> print(extracted_cube.shape) + (20, 6) Arbitrary keywords can be passed down to :meth:`geovista.geodesic.BBox.enclosed` (``outside`` in this example): - >>> extracted_cube = extract_unstructured_region( - ... cube=other_cube_w_mesh, - ... polydata=cube_polydata, - ... region=new_region, - ... outside=True, - ... ) - >>> print(extracted_cube.shape) - (20, 90) + .. doctest:: + :skipif: gv is None + + >>> extracted_cube = extract_unstructured_region( + ... cube=other_cube_w_mesh, + ... polydata=cube_polydata, + ... region=new_region, + ... outside=True, + ... ) + >>> print(extracted_cube.shape) + (20, 90) """ if cube.mesh: From c8395be39d8e82bc00ee11dd091aaeef3abbbb6f Mon Sep 17 00:00:00 2001 From: ukmo-ccbunney Date: Fri, 16 Jan 2026 16:12:28 +0000 Subject: [PATCH 11/14] Better geovista check in conf.py and reinstate missing doctest import --- docs/src/conf.py | 3 --- docs/src/further_topics/ugrid/operations.rst | 1 + 2 files changed, 1 insertion(+), 3 deletions(-) diff --git a/docs/src/conf.py b/docs/src/conf.py index 416798dbaa..7d4ad5d9e1 100644 --- a/docs/src/conf.py +++ b/docs/src/conf.py @@ -221,9 +221,6 @@ def _dotv(version): modindex_common_prefix = ["iris"] # if geovista is not installed we need to mock the imports so the autodoc build works: -# try: -# import geovista # noqa: F401 -# except ImportError: if importlib.util.find_spec("geovista") is None: autodoc_mock_imports = ["geovista", "pyvista"] diff --git a/docs/src/further_topics/ugrid/operations.rst b/docs/src/further_topics/ugrid/operations.rst index 542b748d2a..59b178559e 100644 --- a/docs/src/further_topics/ugrid/operations.rst +++ b/docs/src/further_topics/ugrid/operations.rst @@ -585,6 +585,7 @@ below: .. doctest:: ugrid_operations :skipif: gv is None + >>> from geovista.geodesic import BBox >>> from iris import load_cube, sample_data_path >>> from iris.experimental.geovista import cube_to_polydata, extract_unstructured_region From 10fb09a820eba51c90ba24e75555aa73e7c96789 Mon Sep 17 00:00:00 2001 From: ukmo-ccbunney Date: Fri, 16 Jan 2026 16:35:13 +0000 Subject: [PATCH 12/14] Updated whatsnew --- docs/src/whatsnew/latest.rst | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/docs/src/whatsnew/latest.rst b/docs/src/whatsnew/latest.rst index ed0dff6197..3fbd65c1ae 100644 --- a/docs/src/whatsnew/latest.rst +++ b/docs/src/whatsnew/latest.rst @@ -98,13 +98,19 @@ This document explains the changes made to Iris for this release #. `@tkknight`_ removed flake8, we have ruff now instead. (:pull:`6889`) +#. `@trexfeathers`_ and `@ukmo-ccbunney`_ updated CI to support Python 3.14 + inline with `SPEC0 Minimum Supported Dependencies`_. Note: `pyvista` (and + hence `geovista`) is not yet compatible with Python 3.14, so + `:module:~iris.experimental.geovista` is currently only available for + Python \<3.14. (:pull:`6816`, :issue:`6775`) + .. comment Whatsnew author names (@github name) in alphabetical order. Note that, core dev names are automatically included by the common_links.inc: .. _@hdyson: https://github.com/hdyson - +.. _SPEC0 Minimum Supported Dependencies: https://scientific-python.org/specs/spec-0000/ .. comment Whatsnew resources in alphabetical order: From 47541d14ecb65bf6daa93172d6f7522b6330ecab Mon Sep 17 00:00:00 2001 From: ukmo-ccbunney Date: Tue, 20 Jan 2026 12:21:07 +0000 Subject: [PATCH 13/14] Testing dynamic docstring --- .github/workflows/ci-tests.yml | 3 + lib/iris/experimental/geovista.py | 197 ++++++++++++++++-------------- 2 files changed, 111 insertions(+), 89 deletions(-) diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml index 9088aef8f1..98583f5437 100644 --- a/.github/workflows/ci-tests.yml +++ b/.github/workflows/ci-tests.yml @@ -48,6 +48,9 @@ jobs: - os: "ubuntu-latest" python-version: "3.12" session: "tests" + - os: "ubuntu-latest" + python-version: "3.13" + session: "doctest" env: # NOTE: IRIS_TEST_DATA_VERSION is also set in benchmarks_run.yml diff --git a/lib/iris/experimental/geovista.py b/lib/iris/experimental/geovista.py index a8e2c25c5d..fe6a9961cd 100644 --- a/lib/iris/experimental/geovista.py +++ b/lib/iris/experimental/geovista.py @@ -217,95 +217,6 @@ def extract_unstructured_region(cube, polydata, region, **kwargs): ValueError If `polydata` and the :attr:`~iris.cube.Cube.mesh` on `cube` do not have the same shape. - - Examples - -------- - .. testsetup:: - - from iris import load_cube, sample_data_path - from iris.coords import AuxCoord - from iris.cube import CubeList - - file_path = sample_data_path("mesh_C4_synthetic_float.nc") - cube_w_mesh = load_cube(file_path) - - level_cubes = CubeList() - for height_level in range(72): - height_coord = AuxCoord([height_level], standard_name="height") - level_cube = cube_w_mesh.copy() - level_cube.add_aux_coord(height_coord) - level_cubes.append(level_cube) - - cube_w_mesh = level_cubes.merge_cube() - other_cube_w_mesh = cube_w_mesh[:20, :] - - The parameters of :func:`extract_unstructured_region` have been designed with - flexibility and reuse in mind. This is demonstrated below. - - .. doctest:: - :skipif: gv is None - - >>> from geovista.geodesic import BBox - >>> from iris.experimental.geovista import cube_to_polydata, extract_unstructured_region - >>> print(cube_w_mesh.shape) - (72, 96) - >>> # The mesh dimension represents the horizontal space of the cube. - >>> print(cube_w_mesh.shape[cube_w_mesh.mesh_dim()]) - 96 - >>> cube_polydata = cube_to_polydata(cube_w_mesh[0, :]) - >>> extracted_cube = extract_unstructured_region( - ... cube=cube_w_mesh, - ... polydata=cube_polydata, - ... region=BBox(lons=[0, 70, 70, 0], lats=[-25, -25, 45, 45]), - ... ) - >>> print(extracted_cube.shape) - (72, 11) - - Now reuse the same `cube` and `polydata` to extract a different region: - - .. doctest:: - :skipif: gv is None - - >>> new_region = BBox(lons=[0, 35, 35, 0], lats=[-25, -25, 45, 45]) - >>> extracted_cube = extract_unstructured_region( - ... cube=cube_w_mesh, - ... polydata=cube_polydata, - ... region=new_region, - ... ) - >>> print(extracted_cube.shape) - (72, 6) - - Now apply the same region extraction to a different `cube` that has the - same horizontal shape: - - .. doctest:: - :skipif: gv is None - - >>> print(other_cube_w_mesh.shape) - (20, 96) - >>> extracted_cube = extract_unstructured_region( - ... cube=other_cube_w_mesh, - ... polydata=cube_polydata, - ... region=new_region, - ... ) - >>> print(extracted_cube.shape) - (20, 6) - - Arbitrary keywords can be passed down to - :meth:`geovista.geodesic.BBox.enclosed` (``outside`` in this example): - - .. doctest:: - :skipif: gv is None - - >>> extracted_cube = extract_unstructured_region( - ... cube=other_cube_w_mesh, - ... polydata=cube_polydata, - ... region=new_region, - ... outside=True, - ... ) - >>> print(extracted_cube.shape) - (20, 90) - """ if cube.mesh: # Find what dimension the mesh is in on the cube @@ -360,3 +271,111 @@ def extract_unstructured_region(cube, polydata, region, **kwargs): raise ValueError("Cube must have a mesh") return region_cube + + +# dynamic doc string for above: +import platform # noqa: I001 + +if platform.python_version_tuple() >= ("3", "14", "0"): + extract_unstructured_region.__doc__ = ( + (extract_unstructured_region.__doc__ or "") + + """ +Notes +----- +This functionality is not available in Python 3.14 + """ + ) +else: + extract_unstructured_region.__doc__ = ( + (extract_unstructured_region.__doc__ or "") + + """ +Examples +-------- +.. testsetup:: + + from iris import load_cube, sample_data_path + from iris.coords import AuxCoord + from iris.cube import CubeList + + file_path = sample_data_path("mesh_C4_synthetic_float.nc") + cube_w_mesh = load_cube(file_path) + + level_cubes = CubeList() + for height_level in range(72): + height_coord = AuxCoord([height_level], standard_name="height") + level_cube = cube_w_mesh.copy() + level_cube.add_aux_coord(height_coord) + level_cubes.append(level_cube) + + cube_w_mesh = level_cubes.merge_cube() + other_cube_w_mesh = cube_w_mesh[:20, :] + +The parameters of :func:`extract_unstructured_region` have been designed with +flexibility and reuse in mind. This is demonstrated below. + +.. doctest:: + :skipif: gv is None + + >>> from geovista.geodesic import BBox + >>> from iris.experimental.geovista import cube_to_polydata, extract_unstructured_region + >>> print(cube_w_mesh.shape) + (72, 96) + >>> # The mesh dimension represents the horizontal space of the cube. + >>> print(cube_w_mesh.shape[cube_w_mesh.mesh_dim()]) + 96 + >>> cube_polydata = cube_to_polydata(cube_w_mesh[0, :]) + >>> extracted_cube = extract_unstructured_region( + ... cube=cube_w_mesh, + ... polydata=cube_polydata, + ... region=BBox(lons=[0, 70, 70, 0], lats=[-25, -25, 45, 45]), + ... ) + >>> print(extracted_cube.shape) + (72, 11) + +Now reuse the same `cube` and `polydata` to extract a different region: + +.. doctest:: + :skipif: gv is None + + >>> new_region = BBox(lons=[0, 35, 35, 0], lats=[-25, -25, 45, 45]) + >>> extracted_cube = extract_unstructured_region( + ... cube=cube_w_mesh, + ... polydata=cube_polydata, + ... region=new_region, + ... ) + >>> print(extracted_cube.shape) + (72, 6) + +Now apply the same region extraction to a different `cube` that has the +same horizontal shape: + +.. doctest:: + :skipif: gv is None + + >>> print(other_cube_w_mesh.shape) + (20, 96) + >>> extracted_cube = extract_unstructured_region( + ... cube=other_cube_w_mesh, + ... polydata=cube_polydata, + ... region=new_region, + ... ) + >>> print(extracted_cube.shape) + (20, 6) + +Arbitrary keywords can be passed down to +:meth:`geovista.geodesic.BBox.enclosed` (``outside`` in this example): + +.. doctest:: + :skipif: gv is None + + >>> extracted_cube = extract_unstructured_region( + ... cube=other_cube_w_mesh, + ... polydata=cube_polydata, + ... region=new_region, + ... outside=True, + ... ) + >>> print(extracted_cube.shape) + (20, 90) + + """ + ) From 6b93ef572dcc209303505168b95268fa7a04c835 Mon Sep 17 00:00:00 2001 From: ukmo-ccbunney Date: Tue, 20 Jan 2026 13:32:57 +0000 Subject: [PATCH 14/14] Bump python verson to 3.14 in RTD --- requirements/py312.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements/py312.yml b/requirements/py312.yml index fbb1e8aea5..9c2d6847e9 100644 --- a/requirements/py312.yml +++ b/requirements/py312.yml @@ -4,7 +4,7 @@ channels: - conda-forge dependencies: - - python =3.12 + - python =3.14 # Setup dependencies. - setuptools >=77.0.3