Stare_Dockerfile/Dockerfile.MacOS at master · SpatioTemporal/Stare_Dockerfile · GitHub

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# Use an ARM64 Ubuntu base image (will run on Mac M1)
FROM ubuntu:20.04

# Prevent interactive prompts during package installs
ENV DEBIAN_FRONTEND=noninteractive

# Install system dependencies (including wget + bzip2)
#   - wget, bzip2 (for downloading/unpacking Miniconda)
#   - git, curl, build-essential, swig (for pystare build)
#   - libpq-dev (for psycopg2)
#   - gdal, geos, proj (for geopandas/rasterio)
#   - cmake, doxygen (for any CMake‐based builds or documentation)
RUN apt-get update && \
    apt-get install -y --no-install-recommends \
      wget \
      bzip2 \
      git \
      curl \
      build-essential \
      libpq-dev \
      gdal-bin \
      libgdal-dev \
      libgeos-dev \
      libproj-dev \
      cmake \
      doxygen && \
    rm -rf /var/lib/apt/lists/*

# Install coreutils (md5sum) and symlink it as "md5"
RUN apt-get update && \
    apt-get install -y --no-install-recommends coreutils && \
    ln -s /usr/bin/md5sum /usr/bin/md5

# Download and install Miniconda3 for ARM64
RUN wget --no-check-certificate https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-aarch64.sh \
          -O /tmp/miniconda.sh && \
    bash /tmp/miniconda.sh -b -p /opt/conda && \
    rm /tmp/miniconda.sh

# Add conda to PATH
ENV PATH=/opt/conda/bin:$PATH

# Ensure conda is up to date
RUN conda update -n base -c defaults conda -y

# Install SWIG and wheel via conda-forge
RUN conda install -c conda-forge setuptools swig wheel -y

# Install pyhdf (required by pystare) from conda-forge
RUN conda install -c conda-forge pyhdf -y

# Install cmake
RUN conda install -c conda-forge cmake

# Install doxygen
RUN conda install -c conda-forge doxygen

#Install stare from source
RUN git -c http.sslVerify=false clone https://github.com/SpatioTemporal/STARE /opt/STARE && \
    cd /opt/STARE && \
    mkdir build && \
    cd build && \
    cmake -DSTARE_INSTALL_LIBDIR=lib -DBUILD_SHARED_LIBS=NO ../ && \
    make -j4 && \
    make install

# Build and install pystare from source
RUN git -c http.sslVerify=false clone https://github.com/SpatioTemporal/pystare /opt/pystare && \
    cd /opt/pystare && \
    python3 setup.py build_ext --inplace && \
    python3 setup.py bdist_wheel && \
    python3 setup.py sdist && \
    pip install . && \
    rm -rf /opt/pystare

# Install gdal psycopg2 dask from conda-forge
RUN conda install -c conda-forge gdal psycopg2 dask -y

# Install starepandas from source
RUN git -c http.sslVerify=false clone https://github.com/SpatioTemporal/STAREPandas /opt/starepandas && \
    cd /opt/starepandas && \
    python3 setup.py build_ext --inplace && \
    python3 setup.py bdist_wheel && \
    python3 setup.py sdist && \
    pip install . && \
    rm -rf /opt/starepandas

# Install staremaster from source
RUN git -c http.sslVerify=false clone https://github.com/SpatioTemporal/STAREMaster_py /opt/staremaster && \
    cd /opt/staremaster && \
    python3 setup.py build_ext --inplace && \
    python3 setup.py bdist_wheel && \
    python3 setup.py sdist && \
    pip install . && \
    rm -rf /opt/staremaster

# (Optional) Verify installation by printing versions
RUN python - <<EOF
import pystare, starepandas, staremaster
print("pystare:", pystare.__version__)
print("starepandas:", starepandas.__version__)
print("staremaster:", staremaster.__version__)
EOF

# Set working directory
WORKDIR /workspace

# Default command: open a bash shell
CMD ["/bin/bash"]