From f5c6185e2a10a50e7c2af5f9c28998ba1c437027 Mon Sep 17 00:00:00 2001
From: ramosv <56368263+ramosv@users.noreply.github.com>
Date: Mon, 20 Jan 2025 17:55:27 -0700
Subject: [PATCH 1/2] Remove workflow for docs

---
 .github/workflows/docs.yml | 47 --------------------------------------
 .gitignore                 |  1 +
 2 files changed, 1 insertion(+), 47 deletions(-)
 delete mode 100644 .github/workflows/docs.yml

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
deleted file mode 100644
index f0fd165..0000000
--- a/.github/workflows/docs.yml
+++ /dev/null
@@ -1,47 +0,0 @@
-name: Build and Deploy Documentation
-
-on:
-  push:
-    branches: [main]
-  pull_request:
-    branches: [main]
-
-jobs:
-  build-deploy-docs:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Checkout Repository
-        uses: actions/checkout@v3
-        with:
-          fetch-depth: 0
-
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v4
-        with:
-          python-version: "3.10"
-          check-latest: true
-
-      - name: Install Dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install -r requirements.txt
-          pip install -r requirements-dev.txt
-          pip install torch
-          pip install torch_geometric
-        shell: bash
-
-      - name: Verify Documentation Directory
-        run: test -d docs/source/ || { echo "Docs source directory missing"; exit 1; }
-
-      - name: Build Documentation
-        run: |
-          mkdir -p docs/build/html
-          sphinx-build -b html docs/source/ docs/build/html/
-        shell: bash
-
-      - name: Deploy to GitHub Pages
-        uses: peaceiris/actions-gh-pages@v3
-        with:
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          publish_dir: ./docs/build/html
diff --git a/.gitignore b/.gitignore
index 266b6c2..b41f980 100644
--- a/.gitignore
+++ b/.gitignore
@@ -19,6 +19,7 @@ bioneuralnet.egg-info
 # Block sensitive file types globally
 *.csv
 *.RData
+dpmon_output/
 
 
 # Sphinx documentation build

From 483ddf396679c6e3926ee9b6295164e980ab213a Mon Sep 17 00:00:00 2001
From: ramosv <56368263+ramosv@users.noreply.github.com>
Date: Mon, 20 Jan 2025 17:59:29 -0700
Subject: [PATCH 2/2] Added pre commit install to README instructions

---
 README.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/README.md b/README.md
index f3eb75c..57d76f2 100644
--- a/README.md
+++ b/README.md
@@ -117,6 +117,7 @@ If you plan to contribute to BioNeuralNet:
 git clone https://github.com/UCD-BDLab/BioNeuralNet.git
 cd BioNeuralNet
 pip install -r requirements-dev.txt
+pre-commit install
 pytest
 ```