Error when running skipper in paired end mode

[Aravind-sunda]

skipper/rules/basic/pe_preprocess.smk

Line 136 in 7fa1392

tmpdir = "/tscc/nfs/home/hsher/scratch/singularity_tmp",

When running Skipper in paired-end (PE) mode, Snakemake fails during job preparation with a permission error because the workflow tries to create/use a TSCC-specific temp path under /tscc. This appears to be caused by a hard-coded tmpdir value in skipper/rules/basic/pe_preprocess.smk.