docker4seq/NAMESPACE at master · amparore/docker4seq · GitHub

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# Generated by roxygen2: do not edit by hand

export(bwa)
export(bwaIndexUcsc)
export(cascImpute)
export(cascKoptimization)
export(cascOutputReformat)
export(cascSelFeatures)
export(cascStep1)
export(cascStep2)
export(checkCountDepth)
export(chipseq)
export(chipseqCounts)
export(counts2log)
export(demultiplexing)
export(dockerTest)
export(downloadContainers)
export(experimentPower)
export(filterZeros)
export(gatkDNA)
export(mirnaCounts)
export(mirnaCovar)
export(pca)
export(rnaseqCounts)
export(rsemBw)
export(rsemanno)
export(rsemannoByGtf)
export(rsemstar)
export(rsemstarIndex)
export(rsemstarUscsIndex)
export(runDocker)
export(sample2experiment)
export(sampleSize)
export(scnorm)
export(skewer)
export(star2steps)
export(wrapperDeseq2)
import(utils)