test_bonds: Continuous bond

Calculated the hydrogen bonds for the continuous bond definition. Does
not otherwise change the effects of the unit test, since there is only
one frame.

Author: amritagos

tests/test_bonds.py

@@ -37,6 +37,7 @@ def test_bond_formation(octahedral_system):
         h_atom_types = [h_type]
         donor_acceptor_cutoff = 3.2
         max_angle_deg = 30  # in degrees
+        # Continuous bonds
         solu.james.add_hbonds(
             network,
             system,
@@ -45,7 +46,7 @@ def test_bond_formation(octahedral_system):
             h_atom_types,
             donor_acceptor_cutoff,
             max_angle_deg,
-            True,
+            False,
         )
         # There will be three hydrogen bonds formed between the donor (O) and acceptors (Cl)
         # Therefore there should be a total of 9 bonds