diff --git a/integration-test/src/test/java/org/apache/iotdb/pipe/it/dual/treemodel/auto/basic/IoTDBTreePatternFormatIT.java b/integration-test/src/test/java/org/apache/iotdb/pipe/it/dual/treemodel/auto/basic/IoTDBTreePatternFormatIT.java
index 00e3078a355c0..fc5d483ea5c30 100644
--- a/integration-test/src/test/java/org/apache/iotdb/pipe/it/dual/treemodel/auto/basic/IoTDBTreePatternFormatIT.java
+++ b/integration-test/src/test/java/org/apache/iotdb/pipe/it/dual/treemodel/auto/basic/IoTDBTreePatternFormatIT.java
@@ -441,4 +441,62 @@ public void testIoTDBPatternWithExclusionOnlyRealtimeData() throws Exception {
         "Time,root.db1.d1.s,root.db.d1.t,root.db.d2.s,",
         expectedResSet);
   }
+
+  @Test
+  public void testIoTDBPatternWithInclusionAndExclusionHistoricalData() throws Exception {
+    final Map<String, String> sourceAttributes = new HashMap<>();
+    sourceAttributes.put(
+        "source.pattern.inclusion", "root.test.g_0.d_2*.**,root.test.g_0.d_20.s_0");
+    sourceAttributes.put("source.pattern.exclusion", "root.test.g_0.d_20.**");
+    sourceAttributes.put("source.inclusion", "data.insert");
+    sourceAttributes.put("user", "root");
+
+    final List<String> insertQueries =
+        Arrays.asList(
+            "insert into root.test.g_0.d_21(time, s_1) values (1, 1)",
+            "insert into root.test.g_0.d_22(time, s_1) values (2, 2)",
+            "insert into root.test.g_0.d_20(time, s_0, s_1) values (3, 3, 3)",
+            "insert into root.test.g_0.d_30(time, s_1) values (4, 4)");
+
+    final Set<String> expectedResSet = new HashSet<>();
+    expectedResSet.add("1,1.0,null,");
+    expectedResSet.add("2,null,2.0,");
+
+    testPipeWithMultiplePatterns(
+        sourceAttributes,
+        insertQueries,
+        true, // isHistorical = true
+        "select * from root.test.**",
+        "Time,root.test.g_0.d_21.s_1,root.test.g_0.d_22.s_1,",
+        expectedResSet);
+  }
+
+  @Test
+  public void testIoTDBPatternWithInclusionAndExclusionRealtimeData() throws Exception {
+    final Map<String, String> sourceAttributes = new HashMap<>();
+    sourceAttributes.put(
+        "source.pattern.inclusion", "root.test.g_0.d_2*.**,root.test.g_0.d_20.s_0");
+    sourceAttributes.put("source.pattern.exclusion", "root.test.g_0.d_20.**");
+    sourceAttributes.put("source.inclusion", "data.insert");
+    sourceAttributes.put("user", "root");
+
+    final List<String> insertQueries =
+        Arrays.asList(
+            "insert into root.test.g_0.d_21(time, s_1) values (1, 1)",
+            "insert into root.test.g_0.d_22(time, s_1) values (2, 2)",
+            "insert into root.test.g_0.d_20(time, s_0, s_1) values (3, 3, 3)",
+            "insert into root.test.g_0.d_30(time, s_1) values (4, 4)");
+
+    final Set<String> expectedResSet = new HashSet<>();
+    expectedResSet.add("1,1.0,null,");
+    expectedResSet.add("2,null,2.0,");
+
+    testPipeWithMultiplePatterns(
+        sourceAttributes,
+        insertQueries,
+        false, // isHistorical = false
+        "select * from root.test.**",
+        "Time,root.test.g_0.d_21.s_1,root.test.g_0.d_22.s_1,",
+        expectedResSet);
+  }
 }
diff --git a/iotdb-core/datanode/src/test/java/org/apache/iotdb/db/pipe/pattern/TreePatternPruningTest.java b/iotdb-core/datanode/src/test/java/org/apache/iotdb/db/pipe/pattern/TreePatternPruningTest.java
index d5a209e5d87be..eaa7e17865367 100644
--- a/iotdb-core/datanode/src/test/java/org/apache/iotdb/db/pipe/pattern/TreePatternPruningTest.java
+++ b/iotdb-core/datanode/src/test/java/org/apache/iotdb/db/pipe/pattern/TreePatternPruningTest.java
@@ -23,6 +23,7 @@
 import org.apache.iotdb.commons.pipe.datastructure.pattern.IoTDBTreePattern;
 import org.apache.iotdb.commons.pipe.datastructure.pattern.TreePattern;
 import org.apache.iotdb.commons.pipe.datastructure.pattern.UnionIoTDBTreePattern;
+import org.apache.iotdb.commons.pipe.datastructure.pattern.WithExclusionIoTDBTreePattern;
 import org.apache.iotdb.pipe.api.customizer.parameter.PipeParameters;
 import org.apache.iotdb.pipe.api.exception.PipeException;
 
@@ -172,4 +173,23 @@ public void testLegacyPathMultipleRulesRejected() {
       // Expected exception
     }
   }
+
+  @Test
+  public void testWithExclusionPreserved() {
+    final PipeParameters params =
+        new PipeParameters(
+            new HashMap<String, String>() {
+              {
+                put(
+                    PipeSourceConstant.SOURCE_PATTERN_INCLUSION_KEY,
+                    "root.test.g_0.d_2*.**,root.test.g_0.d_20.s_0");
+                put(PipeSourceConstant.SOURCE_PATTERN_EXCLUSION_KEY, "root.test.g_0.d_20.**");
+              }
+            });
+
+    final TreePattern result = TreePattern.parsePipePatternFromSourceParameters(params);
+    Assert.assertTrue(result instanceof WithExclusionIoTDBTreePattern);
+    Assert.assertEquals(
+        "INCLUSION(root.test.g_0.d_2*.**), EXCLUSION(root.test.g_0.d_20.**)", result.getPattern());
+  }
 }
diff --git a/iotdb-core/node-commons/src/main/java/org/apache/iotdb/commons/pipe/datastructure/pattern/TreePattern.java b/iotdb-core/node-commons/src/main/java/org/apache/iotdb/commons/pipe/datastructure/pattern/TreePattern.java
index 5d6c808a0bbd6..399565ecaab43 100644
--- a/iotdb-core/node-commons/src/main/java/org/apache/iotdb/commons/pipe/datastructure/pattern/TreePattern.java
+++ b/iotdb-core/node-commons/src/main/java/org/apache/iotdb/commons/pipe/datastructure/pattern/TreePattern.java
@@ -21,6 +21,7 @@
 
 import org.apache.iotdb.commons.conf.IoTDBConstant;
 import org.apache.iotdb.commons.path.PartialPath;
+import org.apache.iotdb.commons.path.PathPatternUtil;
 import org.apache.iotdb.commons.pipe.config.constant.PipeSourceConstant;
 import org.apache.iotdb.commons.pipe.config.constant.SystemConstant;
 import org.apache.iotdb.commons.utils.TestOnly;
@@ -873,6 +874,7 @@ public static int[] checkAndLogPatternCoverage(
   /** A specialized Trie to efficiently check path coverage. */
   private static class PatternTrie {
     private final TrieNode root = new TrieNode();
+    private final List<PartialPath> complexPatterns = new ArrayList<>();
 
     private static class TrieNode {
       // Children nodes mapped by specific path segments (excluding *)
@@ -892,6 +894,12 @@ public void add(final PartialPath path) {
       final String[] nodes = path.getNodes();
 
       for (final String segment : nodes) {
+        if (PathPatternUtil.hasWildcard(segment)
+            && !IoTDBConstant.ONE_LEVEL_PATH_WILDCARD.equals(segment)
+            && !IoTDBConstant.MULTI_LEVEL_PATH_WILDCARD.equals(segment)) {
+          complexPatterns.add(path);
+          return;
+        }
         // If we are at a node that is already a MultiLevelWildcard (**),
         // everything below is already covered. We can stop adding.
         if (node.isMultiLevelWildcard) {
@@ -924,7 +932,15 @@ public void add(final PartialPath path) {
 
     /** Checks if the given path is covered by any existing pattern in the Trie. */
     public boolean isCovered(final PartialPath path) {
-      return checkCoverage(root, path.getNodes(), 0);
+      if (checkCoverage(root, path.getNodes(), 0)) {
+        return true;
+      }
+      for (final PartialPath complexPattern : complexPatterns) {
+        if (complexPattern.include(path)) {
+          return true;
+        }
+      }
+      return false;
     }
 
     private boolean checkCoverage(final TrieNode node, final String[] pathNodes, final int index) {
@@ -957,7 +973,15 @@ private boolean checkCoverage(final TrieNode node, final String[] pathNodes, fin
 
     /** Checks if the given path overlaps with any pattern in the Trie. */
     public boolean overlaps(final PartialPath path) {
-      return checkOverlap(root, path.getNodes(), 0);
+      if (checkOverlap(root, path.getNodes(), 0)) {
+        return true;
+      }
+      for (final PartialPath complexPattern : complexPatterns) {
+        if (complexPattern.overlapWith(path)) {
+          return true;
+        }
+      }
+      return false;
     }
 
     private boolean checkOverlap(final TrieNode node, final String[] pathNodes, final int index) {