purescript-genetics-browser/index.html at master · chfi/purescript-genetics-browser · GitHub

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<!doctype html>
<meta charset="UTF-8">
<html>
  <head>
    <link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.3.1/css/all.css" integrity="sha384-mzrmE5qonljUremFsqc01SB46JvROS7bZs3IO2EmfFsd15uHvIt+Y8vEf7N7fWAU" crossorigin="anonymous">
    <link href="style.css" rel="stylesheet" >
  </head>
  <body style="margin: 0">

    <!-- <h1 style="font: bold normal 1.8em sans-serif; margin: 20px">Genetics Genome Browser</h1> -->

    <div id="info-line">
        Powered by <a href=https://github.com/genenetwork/purescript-genetics-browser>genenetwork/purescript-genetics-browser</a>
    </div>
    <div id="browser">
      <div id="controls">
        <button id="scrollLeft"  type="button" >
          <i class="fas fa-arrow-left"></i>
        </button>
        <button id="scrollRight" type="button" >
          <i class="fas fa-arrow-right"></i>
        </button>
        <button id="zoomOut" type="button" >
          <i class="fas fa-search-minus"></i>
        </button>
        <button id="zoomIn"  type="button" >
          <i class="fas fa-search-plus"></i>
        </button>
        <button id="reset"  type="button" >Reset</button>
      </div>
    </div>

    <script src="./index.js"></script>
    <script>

      var localUrls =
      { snps:        "./gwas.json",
        annotations: "./annotations.json"
      };

      var urlRoot = "https://raw.githubusercontent.com/chfi/genetics-browser-example/master/track/data/";

      var githubUrls =
      { snps:        urlRoot + "gwas.json",
        annotations: urlRoot + "annots_fake.json"
      };


      var vscaleWidth = 90.0;
      var legendWidth = 140.0;

      var score = { min: 0.0, max: 30.0, sig: 4 };

      var gwasPadding = { top: 35.0,
                          bottom: 35.0,
                          left: vscaleWidth,
                          right: legendWidth };

      var gwasHeight = 320.0;

      var config =
          { score: score,

            urls: localUrls,

            tracks: {
                gwas: {
                    trackHeight: gwasHeight,
                    padding: gwasPadding,
                    snps: {
                        radius: 3.75,
                        lineWidth: 1.0,
                        color: { outline: "#FFFFFF",
                                 fill:    "#00008B" },
                        pixelOffset: {x: 0.0, y: 0.0}
                    },

                    annotations: {
                        radius: 5.5,
                        outline:   "#000000",
                        snpColor:  "#0074D9",
                        geneColor: "#FF4136"
                    },

                    score: score,

                    legend: {
                        fontSize: 14,
                        hPad: 0.2,
                        vPad: 0.2
                    },

                    vscale: {
                        color: "#000000",
                        hPad: 0.125,
                        numSteps: 3,
                        fonts: { labelSize: 18, scaleSize: 16 }
                    },

                },

            },

            chrs: {
                chrBG1: "#FFFFFF",
                chrBG2: "#EEEEEE",
                chrLabels: { fontSize: 16 },
            },

            // initialChrs: { left: "1", right: "5" }
          };

      GenomeBrowser.main(config)();

      document.getElementById("controls").style.visibility = "visible";

    </script>
  </body>
</html>