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special_functions.h
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168 lines (146 loc) · 6.06 KB
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/***************************************************************************************************
* The PolyMoSim project is distributed under the following license:
*
* Copyright (c) 2006-2022, Christoph Mayer, Forschungsmuseum Alexander Koenig, Bonn, Germany
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
* 1. Redistributions of source code (complete or in parts) must retain
* the above copyright notice, this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in the
* documentation and/or other materials provided with the distribution.
* 3. All advertising materials mentioning features or any use of this software
* e.g. in publications must display the following acknowledgement:
* This product includes software developed by Christoph Mayer, Forschungsmuseum
* Alexander Koenig, Bonn, Germany.
* 4. Neither the name of the organization nor the
* names of its contributors may be used to endorse or promote products
* derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY CHRISTOPH MAYER ''AS IS'' AND ANY
* EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHTHOLDER OR ITS ORGANISATION BE LIABLE FOR ANY
* DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*
* IMPORTANT (needs to be included, if code is redistributed):
* Please not that this license is not compatible with the GNU Public License (GPL)
* due to paragraph 3 in the copyright. It is not allowed under any
* circumstances to use the code of this software in projects distributed under the GPL.
* Furthermore, it is not allowed to redistribute the code in projects which are
* distributed under a license which is incompatible with one of the 4 paragraphs above.
*
* This project makes use of code coming from other projects. What follows is a complete
* list of files which make use of external code. Please refer to the copyright within
* these files.
*
* Files in tclap foler: Copyright (c) 2003 Michael E. Smoot
* See copyright in tclap/COPYRIGHT file for details.
* discrete_gamma.c: Copyright 1993-2004 by Ziheng Yang.
* See copyright in this file for details.
* CRandom.h: Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura
* See copyright in this file for details.
***************************************************************************************************/
#ifndef SPECIAL_FUNCTIONS_H
#define SPECIAL_FUNCTIONS_H
#include <cmath>
//static const double EPS = 0.00000001;
//static const double ONE_EPS = 1-EPS;
inline double distribution_uniform(double x)
{
if (x >= 0 && x < 1)
return 1;
else
return 0;
}
inline double distribution_uniform_interval(double x, double a, double b)
{
if (x > a && x < b) // x==a is not allowed. It automatically prevents division by 0 if a==b.
return (1.0/(b-a));
else
return 0.0;
}
inline double distribution_gauss(double x, double mu, double sd)
{
// 1/sqrt(2 M_PI) replaced by 0.39894228
double tmp = (x-mu)/sd;
return 0.39894228 /sd *exp(-tmp*tmp/2);
}
// From numerical recipes in C, 1992
// returns ln(gamma(x))
inline double ln_gamma(double x)
{
int j;
double y,tmp,ser;
static const double cof[6]={76.18009172947146,-86.50532032941677,24.01409824083091,-1.231739572450155,0.1208650973866179e-2,-0.5395239384953e-5};
y=x;
tmp=x+5.5;
tmp -= (x+0.5)*log(tmp);
ser=1.000000000190015;
for (j=0;j<6;j++) ser += cof[j]/++y;
return -tmp+log(2.5066282746310005*ser/x);
}
inline double local_gamma(double x)
{
return exp(ln_gamma(x));
}
inline double distribution_gamma(double x, double a)
{
// We use that g(x) = pow(x, a-1)*exp(-x)/gamma(a)
// = exp((a-1)*ln(x)-x -ln(gamma(a)))
return exp((a-1)*log(x) - x - ln_gamma(a));
}
// provides:
// beta^alpha/gamma(alpha)*x(alpha-1)exp(-beta*x)
// should have mean m=alpha/beta and variance v=m/beta
// Also: alpha=m*m/V and beta=m/V
// Other implementations sometimes use: theta=1/beta instead of beta.
// This is the form usually found when beta is used as parameter,
// but the literature is also not consistent in this respect.
inline double distribution_gamma(double x, double a, double b)
{
// We use that g(x) = pow(x, a-1)*exp(-x)/gamma(a)
// = exp((a-1)*ln(x)-x -ln(gamma(a)))
return distribution_gamma(x*b,a)*b;
}
// Beta - distribution:
// pdf = Gamma(a+b)/Gamma(a)/Gamma(b)(1-x)^(b-1)x^(a-1)
// = exp(lnGamma(a+b)-lnGamma(a)-lnGamma(b)+(b-1)ln(1-x)+(a-1)ln(x)) for x!=0, x!=1
// Defined for a>0, b>0, 0 <= x <= 1
// For some a,b it is not defined for x==0 or x==1
// Sometimes the convention pdf(x) = 0 is used for x<0 or x>1.
// Since for x==0 and x==1 pdf is either 0 or undefined, we set it to 0
// Here we will use pdf(x)=0 if (x<=0 and x>=1)
inline double distribution_beta(double x, double a, double b)
{
if (x <= 0 || x >= 1 )
{
return 0;
}
if (a <= 0 || b <=0)
{
return 0;
}
return exp( ln_gamma(a+b)-ln_gamma(a)-ln_gamma(b) +(b-1)*log(1-x)+(a-1)*log(x) );
}
inline double heaviside(double x)
{
if (x<0)
return 0;
else
return 1;
}
inline double distribution_cauchy(double x, double s, double t)
{
if (s<=0)
return 0;
return 1/3.141592653589793238*s/(s*s+(x-t)*(x-t));
}
#endif