diff --git a/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/README.md b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/README.md new file mode 100644 index 0000000000..4cab53e9a9 --- /dev/null +++ b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/README.md @@ -0,0 +1,39 @@ +# CDCWonder_NNDSS_Infectious_Weekly + +## Overview +Notifiable Infectious Diseases Data: Weekly tables from CDC WONDER which has the incident counts of different infectious diseases per Previous 52 week that are reported by the 50 states, New York City, the District of Columbia, and the U.S. territories. + +## Data Source +**Source URL:** +`https://data.cdc.gov/api/views/x9gk-5huc/rows.csv?accessType=DOWNLOAD&api_foundry=true` + +## How To Download Input Data +To download and process the data, you'll need to run the provided preprocess script, `preprocess.py`. This script will automatically create an "input_files" folder where you should place the file to be processed.By using this script, we are creating one more columns in the input files such as 'observationDate'. + +statvars: Infectious Diseases + +## Download the data: +For download and preprocess the source data, run: +```python3 preprocess.py``` + +## Processing Instructions +To process data and generate statistical variables, use the following command from the "data" directory: + +**For Test Data Run** +``` +python3 tools/statvar_importer/stat_var_processor.py \ + --input_data=statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/NNDSS_Weekly_Data.csv \ + --pv_map=statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_pvmap.csv \ + --config_file=statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_metadata.csv \ + --output_path=statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/nndss_weekly_output +``` + +**For Main data run** +```bash +python3 tools/statvar_importer/stat_var_processor.py \ + --input_data=statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/input_files/NNDSS_Weekly_Data.csv \ + --pv_map=statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_pvmap.csv \ + --config_file=statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_metadata.csv \ + --existing_statvar_mcf=gs://unresolved_mcf/scripts/statvar/stat_vars.mcf \ + --output_path=statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/output/nndss_weekly_output +``` diff --git a/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/manifest.json b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/manifest.json new file mode 100644 index 0000000000..f3efe0d84a --- /dev/null +++ b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/manifest.json @@ -0,0 +1,36 @@ +{ + "import_specifications": [ + { + "import_name": "CDCWonder_NNDSS_Infectious_Weekly", + "curator_emails": [ + "support@datacommons.org" + ], + "provenance_url": "https://data.cdc.gov/api/views/x9gk-5huc/rows.csv?accessType=DOWNLOAD&api_foundry=true", + "provenance_description": "Notifiable Infectious Diseases Data: Weekly tables from CDC WONDER which has the incident counts of different infectious diseases per week that are reported by the 50 states, New York City, the District of Columbia, and the U.S. territories.", + "scripts": [ + "preprocess.py", + "../../../tools/statvar_importer/stat_var_processor.py --input_data=input_files/NNDSS_Weekly_Data.csv --pv_map='nndss_weekly_pvmap.csv' --config_file=nndss_weekly_metadata.csv --output_path=output/nndss_weekly_output" + ], + "import_inputs": [ + { + "template_mcf": "output/nndss_weekly_output.tmcf", + "cleaned_csv": "output/nndss_weekly_output.csv", + "node_mcf": "output/*.mcf" + } + ], + "source_files": [ + "input_files/NNDSS_Weekly_Data.csv" + ], + "cron_schedule": "00 11 1,15 * *", + "resource_limits": {"cpu": 8, "memory": 32, "disk": 100} + } + ], + "config_override": { + "invoke_import_validation": true, + "invoke_import_tool": true, + "invoke_differ_tool": true, + "skip_input_upload": false, + "skip_gcs_upload": false, + "cleanup_gcs_volume_mount": false + } +} \ No newline at end of file diff --git a/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_metadata.csv b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_metadata.csv new file mode 100644 index 0000000000..247f6dc164 --- /dev/null +++ b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_metadata.csv @@ -0,0 +1,7 @@ +parameter,val +mapped_rows,1 +mapped_columns,5 +header_rows,1 +#places_resolved_csv, +input_columns,8 +#input_rows,1000 \ No newline at end of file diff --git a/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_pvmap.csv b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_pvmap.csv new file mode 100644 index 0000000000..9f37877198 --- /dev/null +++ b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/nndss_weekly_pvmap.csv @@ -0,0 +1,367 @@ +key,prop,val,,,,,,,, +#Reporting Area,,,,,,,,,, +observationDate,observationDate,{Data},,,,,,,, +Previous 52 week Max,value,{Number},,,populationType,MedicalConditionIncident,measurementMethod,CDC_NNDSS_Diseases_WeeklyTables,observationPeriod,P1W +Anthrax,medicalCondition,AnthraxDisease,,,,,,,, +"Arboviral diseases, Chikungunya virus disease",medicalCondition,Chikungunya,,,,,,,, +"Arboviral diseases, Eastern equine encephalitis virus disease",medicalCondition,EasternEquineEncephalitis,,,,,,,, +"Arboviral diseases, Jamestown Canyon virus disease",medicalCondition,JamestownCanyonVirusDisease,,,,,,,, +"Viral hemorrhagic fevers, Machupo virus",medicalCondition,MachupoHemorrhagicFever,,,,,,,, +"Arboviral diseases, La Crosse virus disease",#ignore,ignore,,,,,,,, +"Arboviral diseases, Powassan virus disease",medicalCondition,PowassanVirusDisease,,,,,,,, +Yellow fever,#ignore,ignore,,,,,,,, +"Arboviral diseases, St. Louis encephalitis virus disease",#ignore,ignore,,,,,,,, +"Arboviral diseases, West Nile virus disease",medicalCondition,WestNileVirusDisease,,,,,,,, +Babesiosis,medicalCondition,Babesiosis,,,,,,,, +"Botulism, Foodborne",medicalCondition,FoodborneBotulism,,,,,,,, +"Botulism, Infant",medicalCondition,InfantBotulism,,,,,,,, +"Arboviral diseases, Western equine encephalitis virus disease",#ignore,ignore,,,,,,,, +"Botulism, Other (wound & unspecified)",medicalCondition,WoundBotulism,,,,,,,, +Brucellosis,medicalCondition,"Brucellosis",,,,,,,, +Campylobacteriosis,medicalCondition,Campylobacteriosis,,,,,,,, +"Candida auris, clinical",medicalCondition,CandidaAuris,medicalStatus,ClinicalCase,,,,,, +"Candida auris, screening",medicalCondition,CandidaAuris,,,,,,,, +"Carbapenemase-Producing Organisms (CPO), Total",#ignore,ignore,,,,,,,, +Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,medicalCondition,CarbapenemResistantEnterobacteriaceae,,,,,,,, +Chancroid,medicalCondition,Chancroid,,,,,,,, +Cholera,medicalCondition,Cholera,,,,,,,, +Chlamydia trachomatis infection,#ignore,ignore,,,,,,,, +Coccidioidomycosis,#ignore,ignore,,,,,,,, +"Coccidioidomycosis, Confirmed",#ignore,ignore,,,,,,,, +"Coccidioidomycosis, Probable",#ignore,ignore,,,,,,,, +"Coccidioidomycosis, Total",#ignore,ignore,,,,,,,, +"Coccidioidomycosis, total",#ignore,ignore,,,,,,,, +"Cronobacter invasive infection, infants, Confirmed",#ignore,ignore,,,,,,,, +"Cronobacter invasive infection, infants, Probable",#ignore,ignore,,,,,,,, +Cryptosporidiosis,medicalCondition,Cryptosporidiosis,,,,,,,, +Cyclosporiasis,medicalCondition,Cyclosporiasis,,,,,,,, +"Dengue virus infections, Dengue",medicalCondition,DengueDisease,,,,,,,, +"Dengue virus infections, Dengue-like illness",medicalCondition,DengueLikeIllness,,,,,,,, +"Dengue virus infections, Severe dengue",medicalCondition,SevereDengue,,,,,,,, +"Ehrlichiosis and Anaplasmosis, Anaplasma phagocytophilum infection",#ignore,ignore,,,,,,,, +"Ehrlichiosis and Anaplasmosis, Ehrlichia chaffeensis infection",#ignore,ignore,,,,,,,, +"Ehrlichiosis and Anaplasmosis, Ehrlichia ewingii infection",#ignore,ignore,,,,,,,, +"Ehrlichiosis and Anaplasmosis, Undetermined ehrlichiosis/anaplasmosis",#ignore,ignore,,,,,,,, +Giardiasis,medicalCondition,Giardiasis,,,,,,,, +Gonorrhea,medicalCondition,Gonorrhea,,,,,,,, +"Haemophilus influenzae, invasive disease, Age <5 years, Non-b serotype",medicalCondition,HaemophilusInfluenzae__InvasiveDisease,age,YearsUpto5,serotype,NonSerotypeB,,,, +"Haemophilus influenzae, invasive disease, Age <5 years, Nontypeable",#ignore,Couldn't find existing value,,,,,,,, +"Haemophilus influenzae, invasive disease, Age <5 years, Serotype b",medicalCondition,HaemophilusInfluenzae__InvasiveDisease,age,YearsUpto5,serotype,SerotypeB,,,, +"Haemophilus influenzae, invasive disease, Age <5 years, Unknown serotype",medicalCondition,HaemophilusInfluenzae__InvasiveDisease,age,YearsUpto5,serotype,UnknownSerotype,,,, +"Haemophilus influenzae, invasive disease, All ages, all serotypes",medicalCondition,HaemophilusInfluenzae__InvasiveDisease,,,,,,,, +Hansen's disease,medicalCondition,Leprosy,,,,,,,, +"Hantavirus infection, non-hantavirus pulmonary syndrome",medicalCondition,HaemophilusMeningitis,,,,,,,, +Hantavirus pulmonary syndrome,medicalCondition,HantavirusPulmonarySyndrome,,,,,,,, +Hemolytic uremic syndrome post-diarrheal,medicalCondition,PostDiarrheal__HemolyticUremicSyndrome,,,,,,,, +"Hepatitis A, Confirmed",medicalCondition,HepatitisA,medicalStatus,ConfirmedCase,,,,,, +"Hepatitis B, acute",medicalCondition,AcuteCondition__HepatitisB,,,,,,,, +"Hepatitis B, acute, Confirmed",medicalCondition,AcuteCondition__HepatitisB,medicalStatus,ConfirmedCase,,,,,, +"Hepatitis B, acute, Probable",medicalCondition,AcuteCondition__HepatitisB,medicalStatus,ProbableCase,,,,,, +"Hepatitis B, chronic, Confirmed",#ignore,ignore,,,,,,,, +"Hepatitis B, chronic, Probable",#ignore,ignore,,,,,,,, +"Hepatitis B, perinatal infection",medicalCondition,PerinatalInfection__HepatitisB,,,,,,,, +"Hepatitis B, perinatal, Confirmed",medicalCondition,PerinatalInfection__HepatitisB,medicalStatus,ConfirmedCase,,,,,, +"Hepatitis C, acute, Confirmed",medicalCondition,HepatitisC__AcuteCondition,medicalStatus,ConfirmedCase,,,,,, +"Hepatitis C, acute, Probable",medicalCondition,HepatitisC__AcuteCondition,medicalStatus,ProbableCase,,,,,, +"Hepatitis C, chronic, Confirmed",#ignore,Couldnt get existing value,,,,,,,, +"Hepatitis C, chronic, Probable",#ignore,Couldnt get existing value,,,,,,,, +"Hepatitis C, perinatal infection",medicalCondition,HepatitisC__PerinatalInfection,,,,,,,, +"Hepatitis C, perinatal, Confirmed",medicalCondition,HepatitisC__PerinatalInfection,medicalStatus,ConfirmedCase,,,,,, +"Hepatitis, A, acute",medicalCondition,AcuteCondition__HepatitisA,,,,,,,, +"Hepatitis, B, acute",medicalCondition,AcuteCondition__HepatitisB,,,,,,,, +Influenza-associated pediatric mortality,medicalCondition,Influenza,medicalStatus,PediatricMortality,,,,,, +"Invasive pneumococcal disease, age <5 years, Confirmed",medicalCondition,StreptococcusPneumonia__InvasiveDisease,age,YearsUpto5,medicalStatus,ConfirmedCase,,,, +"Invasive pneumococcal disease, age <5 years, Probable",medicalCondition,StreptococcusPneumonia__InvasiveDisease,age,YearsUpto5,medicalStatus,ProbableCase,,,, +"Invasive pneumococcal disease, all ages, Confirmed",medicalCondition,StreptococcusPneumonia__InvasiveDisease,medicalStatus,ConfirmedCase,,,,,, +"Invasive pneumococcal disease, all ages, Probable",medicalCondition,StreptococcusPneumonia__InvasiveDisease,medicalStatus,ProbableCase,,,,,, +Legionellosis,medicalCondition,LegionnairesDisease,,,,,,,, +Leprosy (Hansen's disease),#ignore,ignore,,,,,,,, +Leptospirosis,medicalCondition,Leptospirosis,,,,,,,, +"Listeriosis, Confirmed",medicalCondition,Listeriosis,medicalStatus,ConfirmedCase,,,,,, +"Listeriosis, Probable",medicalCondition,Listeriosis,medicalStatus,ProbableCase,,,,,, +Malaria,medicalCondition,Malaria,,,,,,,, +"Measles, Imported",medicalCondition,Measles,medicalStatus,ImportedCase,,,,,, +"Measles, Indigenous",medicalCondition,Measles,medicalStatus,IndigenousCase,,,,,, +Melioidosis,#ignore,ignore,,,,,,,, +"Meningococcal disease, All serogroups",medicalCondition,MeningococcalMeningitis,,,,,,,, +"Meningococcal disease, Other serogroups",medicalCondition,MeningococcalMeningitis,serogroup,OtherSerogroups,,,,,, +"Meningococcal disease, Serogroup B",medicalCondition,MeningococcalMeningitis,serogroup,SerogroupB,,,,,, +"Meningococcal disease, Serogroups ACWY",medicalCondition,MeningococcalMeningitis,serogroup,ACWYSerogroup,,,,,, +"Meningococcal disease, Unknown serogroup",medicalCondition,MeningococcalMeningitis,serogroup,UnknownSerogroups,,,,,, +Mpox,#ignore,ignore,,,,,,,, +Mumps,#ignore,ignore,,,,,,,, +Novel Influenza A virus infections,#ignore,ignore,,,,,,,, +"Novel Influenza A virus infections, Confirmed",#ignore,ignore,,,,,,,, +"Novel Influenza A virus infections, Probable",#ignore,ignore,,,,,,,, +"Novel Influenza A virus infections, Total",#ignore,Couldnt find the existing data,,,,,,,, +Pertussis,#ignore,ignore,,,,,,,, +Plague,#ignore,ignore,,,,,,,, +"Poliomyelitis, paralytic",#ignore,ignore,,,,,,,, +"Poliovirus infection, nonparalytic",#ignore,ignore,,,,,,,, +Psittacosis,medicalCondition,Psittacosis,,,,,,,, +"Q fever, Acute",medicalCondition,AcuteCondition__QFever,,,,,,,, +"Q fever, Chronic",medicalCondition,ChronicCondition__QFever,,,,,,,, +"Q fever, Total",medicalCondition,QFever,,,,,,,, +"Rabies, Animal",#ignore,ignore,,,,,,,, +"Rabies, Human",medicalCondition,Rabiesinhuman,,,,,,,, +Rubella,medicalCondition,Rubella,,,,,,,, +"Rubella, congenital syndrome",medicalCondition,Rubella__CongenitalDisease,,,,,,,, +Salmonella Paratyphi infection,#ignore,ignore,,,,,,,, +Salmonella Typhi infection,#ignore,ignore,,,,,,,, +SalmonellaParatyphi infection,#ignore,ignore,,,,,,,, +Salmonellosis (excluding Salmonella Typhi infection and Salmonella Paratyphi infection),#ignore,ignore,,,,,,,, +Severe acute respiratory syndrome-associated coronavirus disease,#ignore,ignore,,,,,,,, +Shiga toxin-producing Escherichia coli (STEC),#ignore,ignore,,,,,,,, +Shigellosis,medicalCondition,Shigellosis,,,,,,,, +Smallpox,#ignore,ignore,,,,,,,, +Streptococcal toxic shock syndrome,medicalCondition,StreptococcalToxicShockSyndrome,,,,,,,, +"Syphilis, Congenital",medicalCondition,CongenitalSyphilis,,,,,,,, +"Syphilis, Primary and secondary",medicalCondition,SyphilisPrimaryAndSecondary,,,,,,,, +Tetanus,#ignore,ignore,,,,,,,, +Toxic shock syndrome (other than Streptococcal),medicalCondition,ToxicShockSyndromExceptStreptococcal,,,,,,,, +Trichinellosis,medicalCondition,Trichinellosis,,,,,,,, +Tuberculosis,#ignore,ignore,,,,,,,, +"Oropouche, non-congenital",#ignore,ignore,,,,,,,, +"COVID-19-associated pediatric mortality",medicalCondition,COVID_19,medicalStatus,PediatricMortality,,,,,,,, +Tularemia,medicalCondition,Tularemia,,,,,,,, +Vancomycin-intermediate Staphylococcus aureus,#ignore,ignore,,,,,,,, +Vancomycin-resistant Staphylococcus aureus,#ignore,ignore,,,,,,,, +Varicella disease,#ignore,ignore,,,,,,,, +Varicella morbidity,#ignore,ignore,,,,,,,, +"Vibriosis (any species of the family Vibrionaceae, other than toxigenic Vibrio cholerae O1 or O139), Confirmed",#ignore,ignore,,,,,,,, +"Vibriosis (any species of the family Vibrionaceae, other than toxigenic Vibrio cholerae O1 or O139), Probable",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Chapare virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Crimean-Congo hemorrhagic fever virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Ebola virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Guanarito virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Junin virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Lassa virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Lujo virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Machupo virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Marburg virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Rift Valley fever virus",#ignore,ignore,,,,,,,, +"Viral hemorrhagic fevers, Sabia virus",#ignore,ignore,,,,,,,, +"Zika virus disease, non-congenital",medicalCondition,ZikaVirusInfection__NonCongenitalDisease,,,,,,,, + + +Anaplasma phagocytophilum,#ignore,ignore,,,,,,,, +"Arboviral diseases, Jamestown Canyon",medicalCondition,JamestownCanyonVirusDisease,,,,,,,, +"Arboviral diseases, La Crosse",#ignore,ignore,,,,,,,, +"Arboviral diseases, Powassan virus",medicalCondition,PowassanVirusDisease,,,,,,,, +"Arboviral diseases, St. Louis encephalitis",#ignore,ignore,,,,,,,, +"Arboviral diseases, West Nile",medicalCondition,WestNileVirusDisease,,,,,,,, +"Arboviral diseases, Western equine encephalitis",#ignore,ignore,,,,,,,, +"Botulism, foodborne",medicalCondition,FoodborneBotulism,,,,,,,, +"Botulism, infant",medicalCondition,InfantBotulism,,,,,,,, +"Botulism, other (includes wound)",medicalCondition,WoundBotulism,,,,,,,, +"Carbapenemase-Producing Organisms (CPO),Total",#ignore,ignore,,,,,,,, +Chapare hemorrhagic fever,#ignore,ignore,,,,,,,, +Chikungunya virus diseases,medicalCondition,Chikungunya,,,,,,,, +Cholera (toxigenic Vibrio cholerae O1 or O139),medicalCondition,Cholera,,,,,,,, +"Coccidioidomycosis, confirmed",#ignore,ignore,,,,,,,, +"Coccidioidomycosis, probable",#ignore,ignore,,,,,,,, +Crimean-Congo hemorrhagic fever,#ignore,ignore,,,,,,,, +Dengue,medicalCondition,DengueDisease,,,,,,,, +"Dengue, severe",medicalCondition,SevereDengue,,,,,,,, +Dengue-like illness,medicalCondition,DengueLikeIllness,,,,,,,, +Ebola hemorrhagic fever,#ignore,ignore,,,,,,,, +Ehrlichia chaffeensis,#ignore,ignore,,,,,,,, +Ehrlichia ewingii,#ignore,ignore,,,,,,,, +"Ehrlichiosis/Anaplasmosis, undetermined",#ignore,ignore,,,,,,,, +Guanarito hemorrhagic fever,#ignore,ignore,,,,,,,, +"Haemophilus influenzae invasive disease, <5 years, not typeable",#ignore,Couldn't find existing value,,,,,,,, +"Haemophilus influenzae invasive disease, <5 years, other serotype (represents non-b serotype)",medicalCondition,HaemophilusInfluenzae__InvasiveDisease,age,YearsUpto5,serotype,NonSerotypeB,,,, +"Haemophilus influenzae invasive disease, <5 years, serotype B",medicalCondition,HaemophilusInfluenzae__InvasiveDisease,age,YearsUpto5,serotype,SerotypeB,,,, +"Haemophilus influenzae invasive disease, <5 years, unknown or missing serotype",medicalCondition,HaemophilusInfluenzae__InvasiveDisease,age,YearsUpto5,serotype,UnknownSerotype,,,, +"Haemophilus influenzae, invasive disease",medicalCondition,HaemophilusInfluenzae__InvasiveDisease,,,,,,,, +"Hantavirus infection, non-Hantavirus Pulmonary Syndrome",medicalCondition,HaemophilusMeningitis,,,,,,,, +Hemolytic uremic syndrome postdiarrheal,medicalCondition,PostDiarrheal__HemolyticUremicSyndrome,,,,,,,, +"Hepatitis A, acute",medicalCondition,AcuteCondition__HepatitisA,,,,,,,, +"Hepatitis B, perinatal",medicalCondition,PerinatalInfection__HepatitisB,,,,,,,, +"Hepatitis C, acute, confirmed",medicalCondition,HepatitisC__AcuteCondition,medicalStatus,ConfirmedCase,,,,,, +"Hepatitis C, acute, probable",medicalCondition,HepatitisC__AcuteCondition,medicalStatus,ProbableCase,,,,,, +"Hepatitis C, perinatal",medicalCondition,HepatitisC__PerinatalInfection,,,,,,,, +"Infection with Neisseria meningitidis, serogroup B",medicalCondition,MeningococcalMeningitis,serogroup,SerogroupB,,,,,, +"Infection with Neisseria meningitidis, serogroup other",medicalCondition,MeningococcalMeningitis,serogroup,OtherSerogroups,,,,,, +"Infection with Neisseria meningitidis, serogroup unknown",medicalCondition,MeningococcalMeningitis,serogroup,UnknownSerogroups,,,,,, +"Infection with Neisseria meningitidis, vaccine serogroup (A,C,Y, W-135)",medicalCondition,MeningococcalMeningitis,serogroup,ACWYSerogroup,,,,,, +"Invasive pneumococcal disease <5, confirmed",medicalCondition,StreptococcusPneumonia__InvasiveDisease,age,YearsUpto5,medicalStatus,ConfirmedCase,,,, +"Invasive pneumococcal disease <5, probable",medicalCondition,StreptococcusPneumonia__InvasiveDisease,age,YearsUpto5,medicalStatus,ProbableCase,,,, +"Invasive pneumococcal disease, confirmed",medicalCondition,StreptococcusPneumonia__InvasiveDisease,medicalStatus,ConfirmedCase,,,,,, +"Invasive pneumococcal disease, probable",medicalCondition,StreptococcusPneumonia__InvasiveDisease,medicalStatus,ProbableCase,,,,,, +Junin hemorrhagic fever,#ignore,ignore,,,,,,,, +Lassa fever,#ignore,ignore,,,,,,,, +Listeriosis confirmed,medicalCondition,Listeriosis,medicalStatus,ConfirmedCase,,,,,, +Listeriosis probable,medicalCondition,Listeriosis,medicalStatus,ProbableCase,,,,,, +Lujo virus,#ignore,ignore,,,,,,,, +Machupo hemorrhagic fever,medicalCondition,MachupoHemorrhagicFever,,,,,,,, +Marburg fever,#ignore,ignore,,,,,,,, +"Measles (rubeola), imported",medicalCondition,Measles,medicalStatus,ImportedCase,,,,,, +"Measles (rubeola), indigenous",medicalCondition,Measles,medicalStatus,IndigenousCase,,,,,, +Meningococcal disease (Neisseria meningitidis),medicalCondition,MeningococcalMeningitis,,,,,,,, +"Novel influenza A virus infections, initial detections of",#ignore,ignore,,,,,,,, +Psittacosis (Ornithosis),medicalCondition,Psittacosis,,,,,,,, +"Q fever, acute",medicalCondition,AcuteCondition__QFever,,,,,,,, +"Q fever, chronic",medicalCondition,ChronicCondition__QFever,,,,,,,, +"Q fever, total",medicalCondition,QFever,,,,,,,, +"Rabies, human",medicalCondition,Rabiesinhuman,,,,,,,, +Sabia-associated hemorrhagic fever,#ignore,ignore,,,,,,,, +Salmonella enterica Typhi (S.Typhi) infection,#ignore,ignore,,,,,,,, +"Salmonella enterica serotypes Paratyphi A, B (tartrate negative) and C (S. Paratyphi) infection",#ignore,ignore,,,,,,,, +Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection),#ignore,ignore,,,,,,,, +Severe Acute Respiratory Syndrome (SARS)-associated Coronavirus disease (SARS-CoV),#ignore,ignore,,,,,,,, +"Syphilis, congenital",medicalCondition,CongenitalSyphilis,,,,,,,, +Toxic-shock syndrome (other than streptococcal),medicalCondition,ToxicShockSyndromExceptStreptococcal,,,,,,,, +Vancomycin-intermediate Staphylococcus aureus (VISA),#ignore,ignore,,,,,,,, +Vancomycin-resistant Staphylococcus aureus (VRSA),#ignore,ignore,,,,,,,, +Varicella (Chickenpox),#ignore,ignore,,,,,,,, +"Vibriosis, confirmed",#ignore,ignore,,,,,,,, +"Vibriosis, probable",#ignore,ignore,,,,,,,, + + +,,,,,,,,,, +ALABAMA,observationAbout,geoId/01,,,,,,,, +ALASKA,observationAbout,geoId/02,,,,,,,, +AMERICAN SAMOA,observationAbout,geoId/60,,,,,,,, +ARIZONA,observationAbout,geoId/04,,,,,,,, +ARKANSAS,observationAbout,geoId/05,,,,,,,, +Alabama,observationAbout,geoId/01,,,,,,,, +Alaska,observationAbout,geoId/02,,,,,,,, +American Samoa,observationAbout,geoId/60,,,,,,,, +Arizona,observationAbout,geoId/04,,,,,,,, +Arkansas,observationAbout,geoId/05,,,,,,,, +CALIFORNIA,observationAbout,geoId/06,,,,,,,, +COLORADO,observationAbout,geoId/08,,,,,,,, +CONNECTICUT,observationAbout,geoId/09,,,,,,,, +California,observationAbout,geoId/06,,,,,,,, +Colorado,observationAbout,geoId/08,,,,,,,, +Commonwealth of Northern Mariana Islands,observationAbout,geoId/69,,,,,,,, +Connecticut,observationAbout,geoId/09,,,,,,,, +DELAWARE,observationAbout,geoId/10,,,,,,,, +DISTRICT OF COLUMBIA,observationAbout,geoId/11,,,,,,,, +Delaware,observationAbout,geoId/10,,,,,,,, +District of Columbia,observationAbout,geoId/11,,,,,,,, +EAST NORTH CENTRAL,observationAbout,usc/EastNorthCentralDivision,,,,,,,, +EAST SOUTH CENTRAL,observationAbout,usc/EastSouthCentralDivision,,,,,,,, +East North Central,observationAbout,usc/EastNorthCentralDivision,,,,,,,, +East South Central,observationAbout,usc/EastSouthCentralDivision,,,,,,,, +FLORIDA,observationAbout,geoId/12,,,,,,,, +Florida,observationAbout,geoId/12,,,,,,,, +GEORGIA,observationAbout,geoId/13,,,,,,,, +GUAM,observationAbout,geoId/66,,,,,,,, +Georgia,observationAbout,geoId/13,,,,,,,, +Guam,observationAbout,geoId/66,,,,,,,, +HAWAII,observationAbout,geoId/15,,,,,,,, +Hawaii,observationAbout,geoId/15,,,,,,,, +IDAHO,observationAbout,geoId/16,,,,,,,, +ILLINOIS,observationAbout,geoId/17,,,,,,,, +INDIANA,observationAbout,geoId/18,,,,,,,, +IOWA,observationAbout,geoId/19,,,,,,,, +Idaho,observationAbout,geoId/16,,,,,,,, +Illinois,observationAbout,geoId/17,,,,,,,, +Indiana,observationAbout,geoId/18,,,,,,,, +Iowa,observationAbout,geoId/19,,,,,,,, +KANSAS,observationAbout,geoId/20,,,,,,,, +KENTUCKY,observationAbout,geoId/21,,,,,,,, +Kansas,observationAbout,geoId/20,,,,,,,, +Kentucky,observationAbout,geoId/21,,,,,,,, +LOUISIANA,observationAbout,geoId/22,,,,,,,, +Louisiana,observationAbout,geoId/22,,,,,,,, +MAINE,observationAbout,geoId/23,,,,,,,, +MARYLAND,observationAbout,geoId/24,,,,,,,, +MASSACHUSETTS,observationAbout,geoId/25,,,,,,,, +MICHIGAN,observationAbout,geoId/26,,,,,,,, +MIDDLE ATLANTIC,observationAbout,usc/MiddleAtlanticDivision,,,,,,,, +MINNESOTA,observationAbout,geoId/27,,,,,,,, +MISSISSIPPI,observationAbout,geoId/28,,,,,,,, +MISSOURI,observationAbout,geoId/29,,,,,,,, +MONTANA,observationAbout,geoId/30,,,,,,,, +MOUNTAIN,observationAbout,usc/MountainDivision,,,,,,,, +Maine,observationAbout,geoId/23,,,,,,,, +Maryland,observationAbout,geoId/24,,,,,,,, +Massachusetts,observationAbout,geoId/25,,,,,,,, +Michigan,observationAbout,geoId/26,,,,,,,, +Middle Atlantic,observationAbout,usc/MiddleAtlanticDivision,,,,,,,, +Minnesota,observationAbout,geoId/27,,,,,,,, +Mississippi,observationAbout,geoId/28,,,,,,,, +Missouri,observationAbout,geoId/29,,,,,,,, +Montana,observationAbout,geoId/30,,,,,,,, +Mountain,observationAbout,usc/MountainDivision,,,,,,,, +NEBRASKA,observationAbout,geoId/31,,,,,,,, +NEVADA,observationAbout,geoId/32,,,,,,,, +NEW ENGLAND,observationAbout,usc/NewEnglandDivision,,,,,,,, +NEW HAMPSHIRE,observationAbout,geoId/33,,,,,,,, +NEW JERSEY,observationAbout,geoId/34,,,,,,,, +NEW MEXICO,observationAbout,geoId/35,,,,,,,, +NEW YORK,observationAbout,geoId/36,,,,,,,, +NEW YORK CITY,observationAbout,geoId/3651000,,,,,,,, +NON-US RESIDENTS,observationAbout,country/USA,residentStatus,NonUSResident,,,,,, +NORTH CAROLINA,observationAbout,geoId/37,,,,,,,, +NORTH DAKOTA,observationAbout,geoId/38,,,,,,,, +NORTHERN MARIANA ISLANDS,observationAbout,geoId/69,,,,,,,, +Nebraska,observationAbout,geoId/31,,,,,,,, +Nevada,observationAbout,geoId/32,,,,,,,, +New England,observationAbout,usc/NewEnglandDivision,,,,,,,, +New Hampshire,observationAbout,geoId/33,,,,,,,, +New Jersey,observationAbout,geoId/34,,,,,,,, +New Mexico,observationAbout,geoId/35,,,,,,,, +New York,observationAbout,geoId/36,,,,,,,, +New York City,observationAbout,geoId/3651000,,,,,,,, +Non-U.S. Residents,observationAbout,country/USA,residentStatus,NonUSResident,,,,,, +North Carolina,observationAbout,geoId/37,,,,,,,, +North Dakota,observationAbout,geoId/38,,,,,,,, +OHIO,observationAbout,geoId/39,,,,,,,, +OKLAHOMA,observationAbout,geoId/40,,,,,,,, +OREGON,observationAbout,geoId/41,,,,,,,, +Ohio,observationAbout,geoId/39,,,,,,,, +Oklahoma,observationAbout,geoId/40,,,,,,,, +Oregon,observationAbout,geoId/41,,,,,,,, +PACIFIC,observationAbout,usc/PacificDivision,,,,,,,, +PENNSYLVANIA,observationAbout,geoId/42,,,,,,,, +PUERTO RICO,observationAbout,geoId/72,,,,,,,, +Pacific,observationAbout,usc/PacificDivision,,,,,,,, +Pennsylvania,observationAbout,geoId/42,,,,,,,, +Puerto Rico,observationAbout,geoId/72,,,,,,,, +RHODE ISLAND,observationAbout,geoId/44,,,,,,,, +Rhode Island,observationAbout,geoId/44,,,,,,,, +SOUTH ATLANTIC,observationAbout,usc/SouthAtlanticDivision,,,,,,,, +SOUTH CAROLINA,observationAbout,geoId/45,,,,,,,, +SOUTH DAKOTA,observationAbout,geoId/46,,,,,,,, +South Atlantic,observationAbout,usc/SouthAtlanticDivision,,,,,,,, +South Carolina,observationAbout,geoId/45,,,,,,,, +South Dakota,observationAbout,geoId/46,,,,,,,, +TENNESSEE,observationAbout,geoId/47,,,,,,,, +TEXAS,observationAbout,geoId/48,,,,,,,, +TOTAL,observationAbout,country/USA,,,,,,,, +Tennessee,observationAbout,geoId/47,,,,,,,, +Texas,observationAbout,geoId/48,,,,,,,, +Total,observationAbout,country/USA,,,,,,,, +U.S. Residents,observationAbout,country/USA,residentStatus ,USResident,,,,,, +U.S. Territories,#ignore,ignore,,,,,,,,, +U.S. VIRGIN ISLANDS,observationAbout,geoId/78,,,,,,,, +U.S. Virgin Islands,observationAbout,geoId/78,,,,,,,, +US RESIDENTS,observationAbout,country/USA,residentStatus,USResident,,,,,, +US TERRITORIES,#ignore,ignore,,,,,,,,, +UTAH,observationAbout,geoId/49,,,,,,,, +Utah,observationAbout,geoId/49,,,,,,,, +VERMONT,observationAbout,geoId/50,,,,,,,, +VIRGINIA,observationAbout,geoId/51,,,,,,,, +Vermont,observationAbout,geoId/50,,,,,,,, +Virginia,observationAbout,geoId/51,,,,,,,, +WASHINGTON,observationAbout,geoId/53,,,,,,,, +WEST NORTH CENTRAL,observationAbout,usc/WestNorthCentralDivision,,,,,,,, +WEST SOUTH CENTRAL,observationAbout,usc/WestSouthCentralDivision,,,,,,,, +WEST VIRGINIA,observationAbout,geoId/54,,,,,,,, +WISCONSIN,observationAbout,geoId/55,,,,,,,, +WYOMING,observationAbout,geoId/56,,,,,,,, +Washington,observationAbout,geoId/53,,,,,,,, +West North Central,observationAbout,usc/WestNorthCentralDivision,,,,,,,, +West South Central,observationAbout,usc/WestSouthCentralDivision,,,,,,,, +West Virginia,observationAbout,geoId/54,,,,,,,, +Wisconsin,observationAbout,geoId/55,,,,,,,, +Wyoming,observationAbout,geoId/56,,,,,,,, + +NON-U.S. RESIDENTS,observationAbout,country/USA,residentStatus,NonUSResident,,,,,, +U.S. RESIDENTS,observationAbout,country/USA,residentStatus,USResident,,,,,, +U.S. TERRITORIES,#ignore,ignore,,,,,,,,, +VIRGIN ISLANDS OF THE U.S.,observationAbout,geoId/78,,,,,,,, \ No newline at end of file diff --git a/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/preprocess.py b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/preprocess.py new file mode 100644 index 0000000000..a67de6a09c --- /dev/null +++ b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/preprocess.py @@ -0,0 +1,129 @@ +# Copyright 2025 Google LLC +# Licensed under the Apache License, Version 2.0 (the "License"); + +import os, sys +import pandas as pd +from absl import app, logging +from pathlib import Path +import datetime +import importlib.util +import shutil + +script_dir = os.path.dirname(os.path.abspath(__file__)) +util_script_path = os.path.abspath(os.path.join(script_dir, '../../../util/download_util_script.py')) +spec = importlib.util.spec_from_file_location('download_util_script', util_script_path) +if spec is None or spec.loader is None: + raise ImportError(f'Could not load download_util_script from {util_script_path}') +download_util_script = importlib.util.module_from_spec(spec) +spec.loader.exec_module(download_util_script) +download_file = download_util_script.download_file +INPUT_DIR = os.path.join(script_dir, "input_files") +Path(INPUT_DIR).mkdir(parents=True, exist_ok=True) +INPUT_FILE = os.path.join(INPUT_DIR, "rows.csv") +NEW_FILE = os.path.join(INPUT_DIR, "NNDSS_Weekly_Data.csv") +SOURCE_URL = "https://data.cdc.gov/api/views/x9gk-5huc/rows.csv?accessType=DOWNLOAD&api_foundry=true" + +def _start_date_of_year(year: int) -> datetime.date: + jan_one = datetime.date(year, 1, 1) + diff = 7 * (jan_one.isoweekday() > 3) - jan_one.isoweekday() + return jan_one + datetime.timedelta(days=diff) + +def get_mmwr_week_start_date(year, week) -> datetime.date: + day_one = _start_date_of_year(year) + diff = 7 * (week - 1) + return day_one + datetime.timedelta(days=diff) + +def preprocess_data(filepath: str): + temp_filepath = filepath + ".tmp" + chunk_size = 100000 + first_chunk = True + chunk_count = 0 + + try: + print(f"DEBUG: Opening pandas reader on {filepath}...") + + # Added safety flags: low_memory=False and on_bad_lines='skip' + # to prevent C-level SIGABRT crashes on bad rows. + reader = pd.read_csv(filepath, chunksize=chunk_size, low_memory=False, on_bad_lines='skip') + + for chunk in reader: + chunk_count += 1 + print(f"DEBUG: Processing chunk {chunk_count}...") + + if first_chunk: + required_cols = ['Current MMWR Year', 'MMWR WEEK'] + if not all(col in chunk.columns for col in required_cols): + raise KeyError(f"The file must contain the columns: {required_cols}.") + + chunk['observationDate'] = chunk.apply( + lambda row: get_mmwr_week_start_date(row['Current MMWR Year'], row['MMWR WEEK']), + axis=1 + ) + + cols = list(chunk.columns) + mmwr_week_index = cols.index('MMWR WEEK') + observation_date_col = cols.pop() + cols.insert(mmwr_week_index + 1, observation_date_col) + chunk = chunk[cols] + + chunk.to_csv(temp_filepath, mode='a' if not first_chunk else 'w', + header=first_chunk, index=False) + first_chunk = False + + print("DEBUG: All chunks processed. Moving temp file...") + shutil.move(temp_filepath, filepath) + print(f"Success: File '{filepath}' updated safely.") + + except Exception as e: + if os.path.exists(temp_filepath): os.remove(temp_filepath) + print(f"CRASH: Error during Pandas processing: {e}") + logging.fatal(f"An unexpected error occurred: {e}") + raise RuntimeError(f"Import job failed An unexpected error occurred: {e}") + +def main(argv): + print("DEBUG: Starting download phase...") + try: + download_file(url=SOURCE_URL, + output_folder=INPUT_DIR, + unzip=False, + headers= None, + tries= 3, + delay= 5, + backoff= 2) + print("DEBUG: Download function completed.") + except Exception as e: + print(f"CRASH: Failed during download: {e}") + logging.fatal(f"Failed to download NNDSS weekly data file,{e}") + raise RuntimeError(f"Failed to download NNDSS weekly data file,{e}") + + # Check if file actually downloaded and check its size + if not os.path.exists(INPUT_FILE): + print("CRASH: The file 'rows.csv' was never downloaded.") + sys.exit(1) + + file_size_mb = os.path.getsize(INPUT_FILE) / (1024 * 1024) + print(f"DEBUG: Downloaded file size is {file_size_mb:.2f} MB.") + + # Prevent Pandas from processing tiny error files + if file_size_mb < 0.1: + print("CRASH: File is suspiciously small! CDC likely returned an HTML error page.") + with open(INPUT_FILE, 'r') as f: + print(f"Preview of bad file:\n{f.read(500)}") + sys.exit(1) + + print("DEBUG: Handing off to Pandas chunker...") + preprocess_data(INPUT_FILE) + + print("DEBUG: Renaming final file...") + try: + if os.path.exists(INPUT_FILE): + if os.path.exists(NEW_FILE): + os.remove(NEW_FILE) + os.rename(INPUT_FILE, NEW_FILE) + print("DEBUG: Successfully renamed file.") + except Exception as e: + print(f"CRASH: Failed to rename file: {e}") + sys.exit(1) + +if __name__ == "__main__": + app.run(main) \ No newline at end of file diff --git a/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/NNDSS_Weekly_Data.csv b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/NNDSS_Weekly_Data.csv new file mode 100644 index 0000000000..c410945aea --- /dev/null +++ b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/NNDSS_Weekly_Data.csv @@ -0,0 +1,100 @@ +Reporting Area,Current MMWR Year,MMWR WEEK,observationDate,Label,Current week,"Current week, flag",Previous 52 week Max,"Previous 52 weeks Max, flag",Cumulative YTD Current MMWR Year,"Cumulative YTD Current MMWR Year, flag",Cumulative YTD Previous MMWR Year,"Cumulative YTD Previous MMWR Year, flag",LOCATION1,LOCATION2,sort_order,geocode +US RESIDENTS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,US RESIDENTS,20221000001.0, +NEW ENGLAND,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,NEW ENGLAND,20221000002.0, +CONNECTICUT,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,CONNECTICUT,,20221000003.0,POINT (-72.738288 41.575155) +MAINE,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,MAINE,,20221000004.0,POINT (-69.06137 45.117911) +MASSACHUSETTS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,MASSACHUSETTS,,20221000005.0,POINT (-71.481104 42.151077) +NEW HAMPSHIRE,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NEW HAMPSHIRE,,20221000006.0,POINT (-71.57139 43.680429) +RHODE ISLAND,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,RHODE ISLAND,,20221000007.0,POINT (-71.534637 41.572574) +VERMONT,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,VERMONT,,20221000008.0,POINT (-72.662695 44.075252) +MIDDLE ATLANTIC,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,MIDDLE ATLANTIC,20221000009.0, +NEW JERSEY,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NEW JERSEY,,20221000010.0,POINT (-74.655514 40.110253) +NEW YORK,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NEW YORK,,20221000011.0,POINT (-75.59655 42.921241) +NEW YORK CITY,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NEW YORK CITY,,20221000012.0, +PENNSYLVANIA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,PENNSYLVANIA,,20221000013.0,POINT (-77.838886 40.896694) +EAST NORTH CENTRAL,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,EAST NORTH CENTRAL,20221000014.0, +ILLINOIS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,ILLINOIS,,20221000015.0,POINT (-89.148632 40.124144) +INDIANA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,INDIANA,,20221000016.0,POINT (-86.2818 39.919991) +MICHIGAN,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,MICHIGAN,,20221000017.0,POINT (-85.730977 44.874798) +OHIO,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,OHIO,,20221000018.0,POINT (-82.70936 40.415534) +WISCONSIN,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,WISCONSIN,,20221000019.0,POINT (-89.732969 44.639954) +WEST NORTH CENTRAL,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,WEST NORTH CENTRAL,20221000020.0, +KANSAS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,KANSAS,,20221000022.0,POINT (-98.38018 38.484729) +MINNESOTA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,MINNESOTA,,20221000023.0,POINT (-94.198308 46.349153) +MISSOURI,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,MISSOURI,,20221000024.0,POINT (-92.477244 38.3675) +NORTH DAKOTA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NORTH DAKOTA,,20221000026.0,POINT (-100.46931 47.446305) +SOUTH DAKOTA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,SOUTH DAKOTA,,20221000027.0,POINT (-100.230491 44.43614) +SOUTH ATLANTIC,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,SOUTH ATLANTIC,20221000028.0, +DELAWARE,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,DELAWARE,,20221000029.0,POINT (-75.452394 38.994926) +DISTRICT OF COLUMBIA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,DISTRICT OF COLUMBIA,,20221000030.0,POINT (-77.016275 38.904785) +FLORIDA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,FLORIDA,,20221000031.0,POINT (-82.420978 28.260731) +GEORGIA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,GEORGIA,,20221000032.0,POINT (-83.426574 32.638481) +MARYLAND,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,MARYLAND,,20221000033.0,POINT (-76.687282 38.946466) +NORTH CAROLINA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NORTH CAROLINA,,20221000034.0,POINT (-79.130883 35.52603) +SOUTH CAROLINA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,SOUTH CAROLINA,,20221000035.0,POINT (-80.864614 33.878572) +VIRGINIA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,VIRGINIA,,20221000036.0,POINT (-78.666382 37.510861) +WEST VIRGINIA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,WEST VIRGINIA,,20221000037.0,POINT (-80.613729 38.642579) +ALABAMA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,ALABAMA,,20221000039.0,POINT (-86.844516 32.756889) +KENTUCKY,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,KENTUCKY,,20221000040.0,POINT (-85.290484 37.526683) +MISSISSIPPI,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,MISSISSIPPI,,20221000041.0,POINT (-89.65344 32.713378) +WEST SOUTH CENTRAL,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,WEST SOUTH CENTRAL,20221000043.0, +ARKANSAS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,ARKANSAS,,20221000044.0,POINT (-92.439162 34.899825) +LOUISIANA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,LOUISIANA,,20221000045.0,POINT (-91.840238 30.921314) +OKLAHOMA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,OKLAHOMA,,20221000046.0,POINT (-97.508297 35.583449) +TEXAS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,TEXAS,,20221000047.0,POINT (-99.317341 31.447238) +MOUNTAIN,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,MOUNTAIN,20221000048.0, +ARIZONA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,ARIZONA,,20221000049.0,POINT (-111.664616 34.293239) +IDAHO,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,IDAHO,,20221000051.0,POINT (-114.659366 44.389073) +MONTANA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,MONTANA,,20221000052.0,POINT (-109.645127 47.033521) +NEVADA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NEVADA,,20221000053.0,POINT (-114.916992 39.283294) +NEW MEXICO,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NEW MEXICO,,20221000054.0,POINT (-106.108388 34.421369) +UTAH,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,UTAH,,20221000055.0,POINT (-111.678222 39.323779) +WYOMING,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,WYOMING,,20221000056.0,POINT (-107.55145 42.999627) +PACIFIC,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,PACIFIC,20221000057.0, +ALASKA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,ALASKA,,20221000058.0,POINT (-151.631889 63.631126) +CALIFORNIA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,CALIFORNIA,,20221000059.0,POINT (-119.662127 37.211164) +HAWAII,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,HAWAII,,20221000060.0,POINT (-157.854309 21.361013) +OREGON,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,OREGON,,20221000061.0,POINT (-120.605279 43.940449) +WASHINGTON,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,WASHINGTON,,20221000062.0,POINT (-120.592492 47.411715) +US TERRITORIES,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,US TERRITORIES,20221000063.0, +AMERICAN SAMOA,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,AMERICAN SAMOA,,20221000064.0, +NORTHERN MARIANA ISLANDS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,NORTHERN MARIANA ISLANDS,,20221000065.0,POINT (145.725693 15.1834) +GUAM,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,GUAM,,20221000066.0,POINT (144.653198 13.3532) +PUERTO RICO,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,PUERTO RICO,,20221000067.0,POINT (-66.414655 18.215692) +U.S. VIRGIN ISLANDS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,U.S. VIRGIN ISLANDS,,20221000068.0, +NON-US RESIDENTS,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,NON-US RESIDENTS,20221000069.0, +TOTAL,2022,10,2022-03-06,Anthrax,,-,0.0,-,,-,,-,,TOTAL,20221000070.0, +US RESIDENTS,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,3.0,-,4.0,-,2.0,-,,US RESIDENTS,20221000071.0, +NEW ENGLAND,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,,NEW ENGLAND,20221000072.0, +CONNECTICUT,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,CONNECTICUT,,20221000073.0,POINT (-72.738288 41.575155) +MAINE,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,MAINE,,20221000074.0,POINT (-69.06137 45.117911) +MASSACHUSETTS,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,MASSACHUSETTS,,20221000075.0,POINT (-71.481104 42.151077) +NEW HAMPSHIRE,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,NEW HAMPSHIRE,,20221000076.0,POINT (-71.57139 43.680429) +RHODE ISLAND,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,RHODE ISLAND,,20221000077.0,POINT (-71.534637 41.572574) +VERMONT,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,VERMONT,,20221000078.0,POINT (-72.662695 44.075252) +MIDDLE ATLANTIC,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,,MIDDLE ATLANTIC,20221000079.0, +NEW JERSEY,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,NEW JERSEY,,20221000080.0,POINT (-74.655514 40.110253) +NEW YORK,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,NEW YORK,,20221000081.0,POINT (-75.59655 42.921241) +NEW YORK CITY,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,NEW YORK CITY,,20221000082.0, +PENNSYLVANIA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,PENNSYLVANIA,,20221000083.0,POINT (-77.838886 40.896694) +EAST NORTH CENTRAL,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,2.0,-,3.0,-,,-,,EAST NORTH CENTRAL,20221000084.0, +ILLINOIS,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,2.0,-,3.0,-,,-,ILLINOIS,,20221000085.0,POINT (-89.148632 40.124144) +INDIANA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,INDIANA,,20221000086.0,POINT (-86.2818 39.919991) +MICHIGAN,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,MICHIGAN,,20221000087.0,POINT (-85.730977 44.874798) +OHIO,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,OHIO,,20221000088.0,POINT (-82.70936 40.415534) +WISCONSIN,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,WISCONSIN,,20221000089.0,POINT (-89.732969 44.639954) +WEST NORTH CENTRAL,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,1.0,-,1.0,-,,WEST NORTH CENTRAL,20221000090.0, +IOWA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,1.0,-,,-,IOWA,,20221000091.0,POINT (-93.500061 42.074659) +KANSAS,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,KANSAS,,20221000092.0,POINT (-98.38018 38.484729) +MINNESOTA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,1.0,-,MINNESOTA,,20221000093.0,POINT (-94.198308 46.349153) +TOTAL,2022,1,2022-01-02,Anthrax,,-,0.0,-,,-,,-,,TOTAL,20220100070.0, +TOTAL,2022,5,2022-01-30,Anthrax,,-,0.0,-,,-,,-,,TOTAL,20220500070.0, +MISSOURI,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,MISSOURI,,20221000094.0,POINT (-92.477244 38.3675) +NEBRASKA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,NEBRASKA,,20221000095.0,POINT (-99.810595 41.527099) +NORTH DAKOTA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,NORTH DAKOTA,,20221000096.0,POINT (-100.46931 47.446305) +SOUTH DAKOTA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,SOUTH DAKOTA,,20221000097.0,POINT (-100.230491 44.43614) +SOUTH ATLANTIC,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,,SOUTH ATLANTIC,20221000098.0, +DELAWARE,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,DELAWARE,,20221000099.0,POINT (-75.452394 38.994926) +DISTRICT OF COLUMBIA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,DISTRICT OF COLUMBIA,,20221000100.0,POINT (-77.016275 38.904785) +FLORIDA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,1.0,-,,-,,-,FLORIDA,,20221000101.0,POINT (-82.420978 28.260731) +GEORGIA,2022,10,2022-03-06,"Arboviral diseases, Chikungunya virus disease",,-,0.0,-,,-,,-,GEORGIA,,20221000102.0,POINT (-83.426574 32.638481) diff --git a/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/nndss_weekly_output.csv b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/nndss_weekly_output.csv new file mode 100644 index 0000000000..3ed649b5e9 --- /dev/null +++ b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/nndss_weekly_output.csv @@ -0,0 +1,99 @@ +observationDate,observationAbout,value,variableMeasured +2022-03-06,country/USA,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease_USResident +2022-03-06,usc/NewEnglandDivision,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/09,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/23,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/25,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/33,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/44,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/50,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,usc/MiddleAtlanticDivision,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/34,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/36,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/3651000,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/42,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,usc/EastNorthCentralDivision,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/17,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/18,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/26,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/39,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/55,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,usc/WestNorthCentralDivision,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/20,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/27,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/29,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/38,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/46,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,usc/SouthAtlanticDivision,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/10,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/11,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/12,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/13,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/24,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/37,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/45,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/51,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/54,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/01,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/21,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/28,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,usc/WestSouthCentralDivision,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/05,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/22,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/40,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/48,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,usc/MountainDivision,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/04,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/16,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/30,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/32,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/35,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/49,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/56,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,usc/PacificDivision,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/02,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/06,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/15,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/41,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/53,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/60,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/69,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/66,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/72,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/78,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,country/USA,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease_NonUSResident +2022-03-06,country/USA,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,country/USA,3,dcid:Count_MedicalConditionIncident_ConditionChikungunya_USResident +2022-03-06,usc/NewEnglandDivision,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/09,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/23,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/25,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/33,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/44,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/50,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,usc/MiddleAtlanticDivision,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/34,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/36,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/3651000,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/42,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,usc/EastNorthCentralDivision,2,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/17,2,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/18,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/26,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/39,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/55,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,usc/WestNorthCentralDivision,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/19,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/20,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/27,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-01-02,country/USA,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-01-30,country/USA,0,dcid:Count_MedicalConditionIncident_ConditionAnthraxDisease +2022-03-06,geoId/29,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/31,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/38,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/46,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,usc/SouthAtlanticDivision,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/10,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/11,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/12,1,dcid:Count_MedicalConditionIncident_ConditionChikungunya +2022-03-06,geoId/13,0,dcid:Count_MedicalConditionIncident_ConditionChikungunya diff --git a/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/nndss_weekly_output.tmcf b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/nndss_weekly_output.tmcf new file mode 100644 index 0000000000..a28cad22bf --- /dev/null +++ b/statvar_imports/cdc/CDCWonder_NNDSS_InfectiousWeekly/testdata/nndss_weekly_output.tmcf @@ -0,0 +1,8 @@ +Node: E:nndss_weekly_output->E0 +observationDate: C:nndss_weekly_output->observationDate +observationAbout: C:nndss_weekly_output->observationAbout +value: C:nndss_weekly_output->value +variableMeasured: C:nndss_weekly_output->variableMeasured +measurementMethod: CDC_NNDSS_Diseases_WeeklyTables +observationPeriod: P1W +typeOf: dcs:StatVarObservation