mkdocs.yml

site_name: DFODE-kit Documentation
site_url: https://deepflame-ai.github.io/DFODE-kit/
site_description: Documentation for DFODE-kit, an agent-friendly toolkit for combustion chemistry integration with deep learning.
repo_name: deepflame-ai/DFODE-kit
repo_url: https://github.com/deepflame-ai/DFODE-kit
edit_uri: edit/main/docs/

theme:
  name: material
  features:
    - navigation.sections
    - navigation.expand
    - navigation.top
    - content.code.copy
    - search.suggest
    - search.highlight

markdown_extensions:
  - admonition
  - toc:
      permalink: true
  - pymdownx.superfences
  - pymdownx.highlight
  - pymdownx.inlinehilite
  - pymdownx.tabbed:
      alternate_style: true

nav:
  - Home: index.md
  - Getting Started: getting-started.md
  - CLI: cli.md
  - Canonical Case Initialization: init.md
  - Runtime Configuration and Case Execution: run-case.md
  - Data Augmentation: augment.md
  - Data Preparation and Training Workflow: data-workflow.md
  - Architecture: architecture.md
  - Tutorials and Workflow: tutorials.md
  - Shared Operational Docs:
      - Overview: agents/README.md
      - Verification: agents/verification.md
      - Worktrees: agents/worktrees.md
      - Roadmap: agents/roadmap.md
      - Docs Topology: agents/topology.md
      - CI Harness Plan: agents/ci-tests-plan.md
      - CLI Usability Plan: agents/cli-usability-plan.md
      - Data I/O Contract Plan: agents/data-io-contract-plan.md
      - Train Config Plan: agents/train-config-plan.md
      - Package Topology Spec: agents/package-topology-spec.md
      - Package Topology Migration Plan: agents/package-topology-migration-plan.md