Merge pull request #77 from pavelkomarov/master

sorry to touch so many files

Author: florisvb

.gitignore

@@ -116,3 +116,4 @@ __pycache__
 dist
 *.whl
 .vscode
+docs/build

README.md

@@ -9,8 +9,6 @@ Python methods for numerical differentiation of noisy data, including multi-obje
 </p>
 
 <p align="center">
-    <a href="#travis" alt="Travis Build Status">
-        <img src="https://travis-ci.com/florisvb/PyNumDiff.svg?branch=master"/></a>
     <a href='https://pynumdiff.readthedocs.io/en/master/?badge=master'>
         <img src='https://readthedocs.org/projects/pynumdiff/badge/?version=master' alt='Documentation Status' /></a>
     <a href="https://badge.fury.io/py/pynumdiff">
@@ -86,9 +84,8 @@ For more details, refer to [this paper](https://doi.org/10.1109/ACCESS.2020.3034
             |- index.rst
             |- ...
       |- .gitignore
-      |- .travis.yml
       |- LICENSE.txt
-      |- requirements.txt
+      |- pyproject.toml
 
 ## Citation
 
@@ -125,7 +122,7 @@ See CITATION.cff file as well as the following references.
 ### Prerequisite
 
 PyNumDiff requires common packages like `numpy`, `scipy`, `matplotlib`, `pytest` (for unittests), `pylint` 
-(for PEP8 style check). For a full list, you can check the file [requirements.txt](requirements.txt)
+(for PEP8 style check). For a full list, you can check the file [pyproject.toml](pyproject.toml)
 
 In addition, it also requires certain additional packages for select functions, though these are not required for a successful install of PyNumDiff:
 * Total Variation Regularization methods: [`cvxpy`](http://www.cvxpy.org/install/index.html)

docs/requirements.txt

@@ -6,6 +6,7 @@ The MIT License (MIT)
 Copyright (c) 2021
 Floris van Breugel, The University of Nevada, Reno, Mechanical Engineering Department
 Yuying Liu, The University of Washington Applied Math Department
+Pavel Komarov, Univerity of Washington Electrical and Computer Engineering
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

docs/source/LICENSE.rst

@@ -20,8 +20,8 @@
 # -- Project information -----------------------------------------------------
 
 project = 'PyNumDiff'
-copyright = '2021, Floris van Breugel, Yuying Liu'
-author = 'Floris van Breugel, Yuying Liu'
+copyright = '2025, Floris van Breugel, Yuying Liu, Pavel Komarov'
+author = 'Floris van Breugel, Yuying Liu, Pavel Komarov'
 
 # The full version, including alpha/beta/rc tags
 release = '0.1.2'

docs/source/conf.py

@@ -1,7 +1,5 @@
 finite_difference
 =================
 
-.. toctree::
-   :maxdepth: 1
-
-   finite_difference/_finite_difference
+.. automodule:: pynumdiff.finite_difference
+    :members:

docs/source/finite_difference.rst

@@ -81,9 +81,8 @@ Structure
             |- ...
       |- setup.py
       |- .gitignore
-      |- .travis.yml
       |- LICENSE.txt
-      |- requirements.txt
+      |- pyproject.toml
 
 Getting Started
 ---------------

docs/source/finite_difference/_finite_difference.rst

@@ -1,7 +1,5 @@
 kalman_smooth
 =============
 
-.. toctree::
-   :maxdepth: 1
-
-   kalman_smooth/_kalman_smooth
+.. automodule:: pynumdiff.kalman_smooth
+    :members: