MSHGC/command.sh at main · iMoonLab/MSHGC · GitHub

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#!/usr/bin/env bash


model_args='{"in_channels": 512, "n_target": 1, "k_nearest": 12, "hiddens": [128, 128, 128], "dropout": 0.28}'
python main.py --config config/ccRCC_H1.yaml \
                        --n_fold 5 \
                        --center ccRCC_H1 \
                        --WSI_info_list_file  dataset/WSI_info_list/ccRCC_H1.json \
                        --model model.MSHGC.Model \
                        --model_args "$model_args" \
                        --work_dir work_dir/MSHGC/ccRCC_H1 \
                        --device 0 \

model_args='{"in_channels": 512, "n_target": 1, "k_nearest": 12, "hiddens": [128, 128, 128], "dropout": 0.28}'
python main.py --config config/ccRCC_H2.yaml \
                        --n_fold 5 \
                        --center ccRCC_H2\
                        --WSI_info_list_file  dataset/WSI_info_list/ccRCC_H2.json \
                        --model model.MSHGC.Model \
                        --model_args "$model_args" \
                        --work_dir work_dir/ccRCC_H2 \
                        --device 0

model_args='{"in_channels": 512, "n_target": 1, "k_nearest": 12, "hiddens": [128, 128, 128], "dropout": 0.28}'
python main.py --config config/ccRCC_H1.yaml \
                        --n_fold 5 \
                        --center ccRCC_H1 \
                        --WSI_info_list_file  dataset/WSI_info_list/ccRCC_H1.json \
                        --model model.MSHGC.Model \
                        --model_args "$model_args" \
                        --work_dir work_dir/MSHGC/ccRCC_H1_test \
                        --device 0 \
                        --phase test \
                        --weights work_dir/MSHGC/ccRCC_H1

model_args='{"in_channels": 512, "n_target": 1, "k_nearest": 12, "hiddens": [128, 128, 128], "dropout": 0.28}'
python main.py --config config/ccRCC_H2.yaml \
                        --n_fold 5 \
                        --center ccRCC_H2\
                        --WSI_info_list_file  dataset/WSI_info_list/ccRCC_H2.json \
                        --model model.MSHGC.Model \
                        --model_args "$model_args" \
                        --work_dir work_dir/ccRCC_H2_test \
                        --device 0 \
                        --phase test \
                        --weights work_dir/MSHGC/ccRCC_H2