diff --git a/template/nextflow_template/olink_nextflow_v0.0.1.conf b/template/nextflow_template/olink_nextflow_v0.0.1.conf index 9ae44e07..043cfdbd 100644 --- a/template/nextflow_template/olink_nextflow_v0.0.1.conf +++ b/template/nextflow_template/olink_nextflow_v0.0.1.conf @@ -45,33 +45,33 @@ process { withName: BCLCONVERT { cpus = 4 - memory = "8 GB" + memory = "16 GB" container = "file:///rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/singularity/nf-core-bclconvert-4.4.6.img" } withName: OLINK_NGS2COUNTS { - cpus = 1 - memory = "4 GB" + cpus = 4 + memory = "16 GB" container = "file:///rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/singularity/igf_olink_ngs2counts_v6.2.sif" } withName: OLINK_REVEAL_NPX_MAP_PROJECT_CREATE { - cpus = 1 - memory = "8 GB" + cpus = 4 + memory = "16 GB" container = "file:///rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/singularity/npx-map-cli.sif" } withName: OLINK_REVEAL_NPX_MAP_PROJECT_EXPORT { - cpus = 1 - memory = "8 GB" + cpus = 4 + memory = "16 GB" container = "file:///rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/singularity/npx-map-cli.sif" } withName: OLINK_REVEAL_R_QC { - cpus = 1 - memory = "8 GB" - container = "file:///rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/singularity/igf_olink_r_qc_v0.2.sif" + cpus = 4 + memory = "16 GB" + container = "file:///rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/singularity/igf_olink_r_qc_v0.3.sif" } @@ -94,5 +94,5 @@ singularity { enabled = true autoMounts = true cacheDir = "$NEXTFLOW_SINGULARITY_CACHE_DIR" - runOptions = "-B {{ RUN_BASE_DIR }}/{{ RUN_ID }},{{ WORKDIR }},/rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/,$EPHEMERAL:/tmp,$EPHEMERAL:/var/tmp" + runOptions = "-B {{ RUN_BASE_DIR }}/{{ RUN_ID }},{{ WORKDIR }},/rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/,$EPHEMERAL,$EPHEMERAL:/tmp,$EPHEMERAL:/var/tmp" } \ No newline at end of file