From 0a722f5ae9c945ea147271eed33053407b421592 Mon Sep 17 00:00:00 2001 From: Avik Datta Date: Mon, 9 Mar 2026 20:01:21 +0000 Subject: [PATCH] fix task f-string --- igf_airflow/utils/dag50_olink_reveal_nextflow_utils.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/igf_airflow/utils/dag50_olink_reveal_nextflow_utils.py b/igf_airflow/utils/dag50_olink_reveal_nextflow_utils.py index d1d2f24c..9d9685e1 100644 --- a/igf_airflow/utils/dag50_olink_reveal_nextflow_utils.py +++ b/igf_airflow/utils/dag50_olink_reveal_nextflow_utils.py @@ -155,10 +155,11 @@ def prepare_olink_nextflow_script( retries=4) def run_olink_nextflow_script(run_script: str): try: + script_dir = os.path.dirname(run_script) bash_cmd = f"""set -eo pipefail; -cd { os.path.dirname(run_script) }; -chmod u+x { run_script }; -bash { run_script }""" +cd {script_dir}; +chmod u+x {run_script}; +bash {run_script}""" return bash_cmd except Exception as e: log.error(e)