From ca088ba0828427063dfe7bc2fa3e1e84ced7ea32 Mon Sep 17 00:00:00 2001
From: Avik Datta <avik.datta@imperial.ac.uk>
Date: Tue, 10 Mar 2026 07:51:49 +0000
Subject: [PATCH] removed profile flag for singularity

---
 template/nextflow_template/olink_nextflow_runner_v0.0.1.sh | 1 -
 1 file changed, 1 deletion(-)

diff --git a/template/nextflow_template/olink_nextflow_runner_v0.0.1.sh b/template/nextflow_template/olink_nextflow_runner_v0.0.1.sh
index 4af5239d..f398c302 100644
--- a/template/nextflow_template/olink_nextflow_runner_v0.0.1.sh
+++ b/template/nextflow_template/olink_nextflow_runner_v0.0.1.sh
@@ -14,7 +14,6 @@ cd {{ WORKDIR }}
 $NEXTFLOW_EXE run /rds/general/project/genomics-facility-archive-2019/live/OLINK_DATA/olink_reveal_npx_and_qc_pipeline/main.nf \
   -with-tower "$NEXTFLOW_TOWER" \
   -resume \
-  -profile singularity \
   --outdir {{ WORKDIR }}/results \
   -work-dir {{ WORKDIR }}/work \
   -with-report {{ WORKDIR }}/results/report.html \