From 15a844fceeab4bc0aa7f92050398a05a66d7aadd Mon Sep 17 00:00:00 2001 From: Avik Datta Date: Tue, 10 Mar 2026 23:09:31 +0000 Subject: [PATCH] update env file --- template/cellranger_template/cellranger_aggr_run_script_v1.sh | 2 +- .../cellranger_template/cellranger_arc_aggr_run_script_v1.sh | 2 +- template/cellranger_template/cellranger_arc_run_script_v1.sh | 2 +- template/cellranger_template/cellranger_multi_run_script_v1.sh | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/template/cellranger_template/cellranger_aggr_run_script_v1.sh b/template/cellranger_template/cellranger_aggr_run_script_v1.sh index 63ae50af..180238e2 100644 --- a/template/cellranger_template/cellranger_aggr_run_script_v1.sh +++ b/template/cellranger_template/cellranger_aggr_run_script_v1.sh @@ -16,7 +16,7 @@ ## ## IMPORT ENV -source /rds/general/project/genomics-facility-archive-2019/live/tgu/resources/pipeline_resource/cellranger/env.sh +source /rds/general/project/genomics-facility-archive-2019/live/PIPELINE_RESOURCES/CELLRANGER_ENV/env.sh cd {{ WORKDIR }} diff --git a/template/cellranger_template/cellranger_arc_aggr_run_script_v1.sh b/template/cellranger_template/cellranger_arc_aggr_run_script_v1.sh index 4f4a616e..a6353aaa 100644 --- a/template/cellranger_template/cellranger_arc_aggr_run_script_v1.sh +++ b/template/cellranger_template/cellranger_arc_aggr_run_script_v1.sh @@ -18,7 +18,7 @@ ## ## IMPORT ENV -source /rds/general/project/genomics-facility-archive-2019/live/tgu/resources/pipeline_resource/cellranger/env.sh +source /rds/general/project/genomics-facility-archive-2019/live/PIPELINE_RESOURCES/CELLRANGER_ENV/env.sh cd {{ WORKDIR }} diff --git a/template/cellranger_template/cellranger_arc_run_script_v1.sh b/template/cellranger_template/cellranger_arc_run_script_v1.sh index eb10e5e6..8623b192 100644 --- a/template/cellranger_template/cellranger_arc_run_script_v1.sh +++ b/template/cellranger_template/cellranger_arc_run_script_v1.sh @@ -17,7 +17,7 @@ ## ## IMPORT ENV -source /rds/general/project/genomics-facility-archive-2019/live/tgu/resources/pipeline_resource/cellranger/env.sh +source /rds/general/project/genomics-facility-archive-2019/live/PIPELINE_RESOURCES/CELLRANGER_ENV/env.sh cd {{ WORKDIR }} diff --git a/template/cellranger_template/cellranger_multi_run_script_v1.sh b/template/cellranger_template/cellranger_multi_run_script_v1.sh index 7bfe69e2..9bc8362c 100644 --- a/template/cellranger_template/cellranger_multi_run_script_v1.sh +++ b/template/cellranger_template/cellranger_multi_run_script_v1.sh @@ -16,7 +16,7 @@ ## ## IMPORT ENV -source /rds/general/project/genomics-facility-archive-2019/live/tgu/resources/pipeline_resource/cellranger/env.sh +source /rds/general/project/genomics-facility-archive-2019/live/PIPELINE_RESOURCES/CELLRANGER_ENV/env.sh cd {{ WORKDIR }}