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csv_reader.h
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344 lines (293 loc) · 11 KB
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//
// Created by lehoai on 2/4/26.
//
#ifndef SIMDCSV_CSV_READER_H
#define SIMDCSV_CSV_READER_H
#include <string_view>
#include <immintrin.h>
#include <vector>
#include <thread>
#include <charconv>
#include <optional>
#include <mutex>
#include <condition_variable>
#include "mmap.h"
constexpr size_t BUFFER_SIZE = 128 * 1024;
constexpr size_t PREFETCH_CHUNK = 64 * 1024 * 1024; // 64MB prefetch ahead
constexpr size_t PAGE_SIZE = 4096;
namespace csv {
struct format {
char delimiter = ',';
char new_line = '\n';
std::optional<char> quote;
int header_row =0;
};
// Prefix XOR
// ex: 00100100 -> 00111100
inline uint32_t prefix_xor(uint32_t mask) {
mask ^= (mask << 1);
mask ^= (mask << 2);
mask ^= (mask << 4);
mask ^= (mask << 8);
mask ^= (mask << 16);
return mask;
}
// trim quote
inline std::string_view trim_quotes(const std::string_view sv, const csv::format& format) {
if (!format.quote.has_value()) {
return sv;
}
if (sv.size() >= 2 && sv.front() == format.quote.value() && sv.back() == format.quote.value()) {
return sv.substr(1, sv.size() - 2);
}
return sv;
}
// helper convert string_view to data
// std::from_chars for best performance
template<typename T>
inline T get(std::string_view sv) {
T value{};
std::from_chars(sv.data(), sv.data() + sv.size(), value);
return value;
}
class CsvReader {
private:
const char* file_path = nullptr;
csv::format format;
std::unique_ptr<csv::file::FMmap> f_map;
const char* end = nullptr;
int col_num = 0;
const char* data_start = nullptr;
std::vector<std::string> headers;
inline void parse_header_row(const char* data);
public:
CsvReader(const char* file_path, csv::format format);
template <typename RowCallback>
void parse(const RowCallback &callback);
std::vector<std::string> getHeaders() {
return headers;
}
};
}
inline csv::CsvReader::CsvReader(const char *file_path, const csv::format format) {
this->file_path = file_path;
this->format = format;
f_map = std::make_unique<csv::file::FMmap>(file_path);
const char *data = f_map->data();
const size_t size = f_map->size();
this->end = data + size;
// Auto-detect header and column count
parse_header_row(data);
}
template <typename RowCallback>
void csv::CsvReader::parse(const RowCallback &callback) {
const char* ptr = data_start; // start after header row
// PREFETCH THREAD
// Track parser progress so prefetcher stays ahead
std::mutex prefetch_mtx;
std::condition_variable prefetch_cv;
bool advance_signal = false; // guarded by prefetch_mtx
bool done = false; // guarded by prefetch_mtx
// RAII guard
struct ThreadGuard {
std::thread& t;
std::mutex& mtx;
std::condition_variable& cv;
bool& done_flag;
ThreadGuard(const ThreadGuard&) = delete;
ThreadGuard& operator=(const ThreadGuard&) = delete;
ThreadGuard(ThreadGuard&&) = delete;
ThreadGuard& operator=(ThreadGuard&&) = delete;
~ThreadGuard() {
{
std::lock_guard lock(mtx);
done_flag = true;
}
cv.notify_one();
if (t.joinable()) {
t.join();
}
}
};
std::thread prefetcher([&]() {
volatile char sink = 0; // prevent optimization
const char* prefetch_ptr = data_start;
const char* local_target = std::min(data_start + PREFETCH_CHUNK, end);
while (true) {
// Touch pages to trigger page faults ahead of parser
while (prefetch_ptr < local_target) {
sink += *prefetch_ptr; // page fault
prefetch_ptr += PAGE_SIZE;
}
if (prefetch_ptr >= end) break;
// sleep
{
std::unique_lock<std::mutex> lock(prefetch_mtx);
prefetch_cv.wait(lock, [&] {
return advance_signal || done;
});
if (done) break;
advance_signal = false;
}
local_target = std::min(prefetch_ptr + PREFETCH_CHUNK, end);
}
(void)sink; // suppress unused warning
});
ThreadGuard guard{prefetcher, prefetch_mtx, prefetch_cv, done};
const __m256i v_comma = _mm256_set1_epi8(format.delimiter);
const __m256i v_newline = _mm256_set1_epi8(format.new_line);
const __m256i v_quote = format.quote.has_value() ? _mm256_set1_epi8(format.quote.value()) : _mm256_setzero_si256();
// std::vector<std::string_view> current_row;
// current_row.reserve(col_num);
auto current_row = std::make_unique<std::string_view[]>(col_num);
int col_idx = 0;
const char* field_start = ptr;
uint32_t in_quote = 0;
// loop with step 32 bytes
while (ptr + 32 <= end) {
// load 32 bytes into register
const __m256i chunk = _mm256_loadu_si256(reinterpret_cast<const __m256i*>(ptr));
// find comma, new line, quote parallel
const __m256i cmp_comma = _mm256_cmpeq_epi8(chunk, v_comma);
const __m256i cmp_newline = _mm256_cmpeq_epi8(chunk, v_newline);
uint32_t quote_mask = 0;
uint32_t quote_solid_mask = 0;
if (format.quote.has_value()) {
const __m256i cmp_quote = _mm256_cmpeq_epi8(chunk, v_quote);
quote_mask = _mm256_movemask_epi8(cmp_quote);
// if in_quote = 1 -> (0 - 1) = -1 = 0xFFFFFFFF -> XOR result is NOT mask
// if in_quote = 0 -> (0 - 0) = 0 = 0x00000000 -> XOR result is mask (keep)
quote_solid_mask = prefix_xor(quote_mask);
quote_solid_mask ^= (0 - in_quote);
// calculate in_quote for next loop
// if number of quote is odd, XOR with 1
// else XOR with 0
in_quote ^= (_mm_popcnt_u32(quote_mask) & 1);
}
// convert result to bitmask 32bit
const uint32_t comma_mask = _mm256_movemask_epi8(cmp_comma);
const uint32_t newline_mask = _mm256_movemask_epi8(cmp_newline);
const uint32_t valid_comma_mask = comma_mask & ~quote_solid_mask;
const uint32_t valid_newline_mask = newline_mask & ~quote_solid_mask;
// get comma outside solid mask (outside quotation)
uint32_t valid_sep_mask = valid_comma_mask | valid_newline_mask;
while (valid_sep_mask != 0) {
const int offset = __builtin_ctz(valid_sep_mask);
const char* found_pos = ptr +offset;
if (col_idx < col_num) {
current_row[col_idx] = trim_quotes(std::string_view(field_start, found_pos - field_start), format);
}
col_idx++;
// check current char is newline
if ((valid_newline_mask >> offset) & 1) {
// Lazy clear: only clear unfilled fields if row has fewer columns
if (col_idx < col_num) {
for (int i = col_idx; i < col_num; i++) {
current_row[i] = std::string_view();
}
}
callback(current_row.get());
col_idx = 0;
}
field_start = found_pos + 1;
// mark processed pos to 0
valid_sep_mask &= ~(1u << offset);
}
ptr += 32;
// Update parser position for prefetcher (every 64KB to reduce overhead)
if ((reinterpret_cast<uintptr_t>(ptr) & 0xFFFF) == 0) {
{
std::lock_guard<std::mutex> lock(prefetch_mtx);
advance_signal = true;
}
prefetch_cv.notify_one(); // wakeup prefetcher
}
}
// remain bytes
while (ptr < end) {
char c = *ptr;
if (format.quote.has_value() && c == format.quote.value()) {
in_quote = !in_quote;
} else if (!in_quote) {
if (c == format.delimiter || c == format.new_line) {
if (col_idx < col_num) {
current_row[col_idx] = trim_quotes(std::string_view(field_start, ptr - field_start), format);
}
col_idx++;
if (c == format.new_line) {
// Lazy clear: only clear unfilled fields if row has fewer columns
if (col_idx < col_num) {
for (int i = col_idx; i < col_num; i++) {
current_row[i] = std::string_view();
}
}
callback(current_row.get());
col_idx = 0;
}
field_start = ptr + 1;
}
}
ptr++;
}
// Flush last line (if file doesn't end with newline)
if (field_start < end) {
if (col_idx < col_num) {
current_row[col_idx] = trim_quotes(std::string_view(field_start, end - field_start), format);
}
col_idx++;
}
if (col_idx > 0) {
// Lazy clear: only clear unfilled fields if last row has fewer columns
if (col_idx < col_num) {
for (int i = col_idx; i < col_num; i++) {
current_row[i] = std::string_view();
}
}
callback(current_row.get());
}
// // Stop prefetcher thread
// {
// std::lock_guard lock(prefetch_mtx);
// done = true;
// }
// prefetch_cv.notify_one();
// prefetcher.join();
}
// Parse header row and return: (col_count, headers, pointer after header line)
void csv::CsvReader::parse_header_row(const char* data) {
const char* ptr = data;
const char* field_start = data;
bool in_quote = false;
int header_row_idx = 0;
while (ptr < end) {
const char c = *ptr;
if (format.quote.has_value() && c == format.quote.value()) {
in_quote = !in_quote;
} else if (!in_quote) {
if (c == format.delimiter || c == format.new_line) {
if (header_row_idx == format.header_row) {
std::string header {trim_quotes(std::string_view(field_start, ptr - field_start), format)};
headers.push_back(header);
}
field_start = ptr + 1;
if (c == format.new_line) {
if (header_row_idx == format.header_row) {
this->col_num = static_cast<int>(headers.size());
this->data_start = ptr + 1;
return;
}
header_row_idx++;
}
}
}
ptr++;
}
// Handle last field if no trailing newline
if (field_start < end) {
std::string header {trim_quotes(std::string_view(field_start, end - field_start), format)};
headers.push_back(header);
}
this->col_num = static_cast<int>(headers.size());
this->data_start = end;
}
#endif //SIMDCSV_CSV_READER_H