From 67ec97617587b1beead9a3357098eb179bc13811 Mon Sep 17 00:00:00 2001
From: Darius Oprea <63239571+opreaDO@users.noreply.github.com>
Date: Tue, 31 Mar 2026 17:17:08 +0100
Subject: [PATCH 1/3] refactor: remove duplicate cache name constants in ag3.py

Cleaned up redundant constant declarations for XPEHH_GWSS_CACHE_NAME and IHS_GWSS_CACHE_NAME that were declared twice at the module level.
---
 malariagen_data/ag3.py | 2 --
 1 file changed, 2 deletions(-)

diff --git a/malariagen_data/ag3.py b/malariagen_data/ag3.py
index ae425a79f..2f5eedea9 100644
--- a/malariagen_data/ag3.py
+++ b/malariagen_data/ag3.py
@@ -95,8 +95,6 @@ def _setup_aim_palettes():
     "aim_species": "object",
 }
 
-XPEHH_GWSS_CACHE_NAME = "ag3_xpehh_gwss_v1"
-IHS_GWSS_CACHE_NAME = "ag3_ihs_gwss_v1"
 ROH_HMM_CACHE_NAME = "ag3_roh_hmm_v1"
 
 

From cff15d0b1f2423b3e9ee5f3ee1fae6e781a7ff3c Mon Sep 17 00:00:00 2001
From: Jon Brenas <51911846+jonbrenas@users.noreply.github.com>
Date: Wed, 6 May 2026 15:49:15 +0100
Subject: [PATCH 2/3] Add ROH_HMM_CACHE_NAME constant to ag3.py

---
 malariagen_data/ag3.py | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/malariagen_data/ag3.py b/malariagen_data/ag3.py
index 2f5eedea9..6a29fc489 100644
--- a/malariagen_data/ag3.py
+++ b/malariagen_data/ag3.py
@@ -19,6 +19,7 @@
 }
 XPEHH_GWSS_CACHE_NAME = "ag3_xpehh_gwss_v1"
 IHS_GWSS_CACHE_NAME = "ag3_ihs_gwss_v1"
+ROH_HMM_CACHE_NAME = "ag3_roh_hmm_v1"
 VIRTUAL_CONTIGS = {
     "2RL": ("2R", "2L"),
     "3RL": ("3R", "3L"),
@@ -95,9 +96,6 @@ def _setup_aim_palettes():
     "aim_species": "object",
 }
 
-ROH_HMM_CACHE_NAME = "ag3_roh_hmm_v1"
-
-
 class Ag3(AnophelesDataResource):
     """Provides access to data from Ag3.x releases.
 

From ce5a35264b793cd4afaa6376889c34d2fd3005a2 Mon Sep 17 00:00:00 2001
From: Jon Brenas <51911846+jonbrenas@users.noreply.github.com>
Date: Wed, 6 May 2026 15:54:06 +0100
Subject: [PATCH 3/3] linting

---
 malariagen_data/ag3.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/malariagen_data/ag3.py b/malariagen_data/ag3.py
index 6a29fc489..9e87092fd 100644
--- a/malariagen_data/ag3.py
+++ b/malariagen_data/ag3.py
@@ -96,6 +96,7 @@ def _setup_aim_palettes():
     "aim_species": "object",
 }
 
+
 class Ag3(AnophelesDataResource):
     """Provides access to data from Ag3.x releases.