From a347ab06d676aae4d6807356fd6b7649e1227bdc Mon Sep 17 00:00:00 2001 From: jonbrenas Date: Mon, 27 Apr 2026 16:59:16 +0000 Subject: [PATCH] Reran cloud --- docs/adar1/cloud.ipynb | 330 ++++++++++++++++++++--------------------- 1 file changed, 165 insertions(+), 165 deletions(-) diff --git a/docs/adar1/cloud.ipynb b/docs/adar1/cloud.ipynb index 3c7905b..486e6f5 100644 --- a/docs/adar1/cloud.ipynb +++ b/docs/adar1/cloud.ipynb @@ -38,11 +38,11 @@ "base_uri": "https://localhost:8080/" }, "execution": { - "iopub.execute_input": "2026-04-18T15:31:04.927908Z", - "iopub.status.busy": "2026-04-18T15:31:04.927664Z", - "iopub.status.idle": "2026-04-18T15:31:04.931099Z", - "shell.execute_reply": "2026-04-18T15:31:04.930577Z", - "shell.execute_reply.started": "2026-04-18T15:31:04.927886Z" + "iopub.execute_input": "2026-04-27T16:57:51.767351Z", + "iopub.status.busy": "2026-04-27T16:57:51.766744Z", + "iopub.status.idle": "2026-04-27T16:57:51.770914Z", + "shell.execute_reply": "2026-04-27T16:57:51.770199Z", + "shell.execute_reply.started": "2026-04-27T16:57:51.767328Z" }, "id": "wqHBq442QH_1", "outputId": "1c1306a2-d6f1-46a2-ee4d-30b13dad9148", @@ -52,7 +52,7 @@ }, "outputs": [], "source": [ - "%pip install -q malariagen_data" + "#%pip install -q malariagen_data" ] }, { @@ -69,11 +69,11 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2026-04-18T15:31:08.582719Z", - "iopub.status.busy": "2026-04-18T15:31:08.582477Z", - "iopub.status.idle": "2026-04-18T15:31:11.009090Z", - "shell.execute_reply": "2026-04-18T15:31:11.008195Z", - "shell.execute_reply.started": "2026-04-18T15:31:08.582699Z" + "iopub.execute_input": "2026-04-27T16:57:55.985977Z", + "iopub.status.busy": "2026-04-27T16:57:55.985298Z", + "iopub.status.idle": "2026-04-27T16:58:04.341339Z", + "shell.execute_reply": "2026-04-27T16:58:04.340541Z", + "shell.execute_reply.started": "2026-04-27T16:57:55.985947Z" }, "id": "970klnG1eu8N", "tags": [] @@ -108,11 +108,11 @@ "height": 190 }, "execution": { - "iopub.execute_input": "2026-04-18T15:31:11.011078Z", - "iopub.status.busy": "2026-04-18T15:31:11.010267Z", - "iopub.status.idle": "2026-04-18T15:31:11.734369Z", - "shell.execute_reply": "2026-04-18T15:31:11.733720Z", - "shell.execute_reply.started": "2026-04-18T15:31:11.011055Z" + "iopub.execute_input": "2026-04-27T16:58:10.207712Z", + "iopub.status.busy": "2026-04-27T16:58:10.207029Z", + "iopub.status.idle": "2026-04-27T16:58:11.472254Z", + "shell.execute_reply": "2026-04-27T16:58:11.471707Z", + "shell.execute_reply.started": "2026-04-27T16:58:10.207686Z" }, "id": "mIsSaTuOQH_2", "outputId": "4facd5a9-6e43-460a-811c-30293568918e", @@ -393,7 +393,7 @@ " document.body.appendChild(element);\n", " }\n", "\n", - " const js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.6.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.6.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.6.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.6.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-mathjax-3.6.3.min.js\"];\n", + " const js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.7.0.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.7.0.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.7.0.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.7.0.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-mathjax-3.7.0.min.js\"];\n", " const css_urls = [];\n", "\n", " const inline_js = [ function(Bokeh) {\n", @@ -433,7 +433,7 @@ " }\n", "}(window));" ], - "application/vnd.bokehjs_load.v0+json": "'use strict';\n(function(root) {\n function now() {\n return new Date();\n }\n\n const force = true;\n\n if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n root._bokeh_onload_callbacks = [];\n root._bokeh_is_loading = undefined;\n }\n\n\n if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n const NB_LOAD_WARNING = {'data': {'text/html':\n \"
\\n\"+\n \"

\\n\"+\n \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n \"

\\n\"+\n \"\\n\"+\n \"\\n\"+\n \"from bokeh.resources import INLINE\\n\"+\n \"output_notebook(resources=INLINE)\\n\"+\n \"\\n\"+\n \"
\"}};\n\n function display_loaded(error = null) {\n const el = document.getElementById(null);\n if (el != null) {\n const html = (() => {\n if (typeof root.Bokeh === \"undefined\") {\n if (error == null) {\n return \"BokehJS is loading ...\";\n } else {\n return \"BokehJS failed to load.\";\n }\n } else {\n const prefix = `BokehJS ${root.Bokeh.version}`;\n if (error == null) {\n return `${prefix} successfully loaded.`;\n } else {\n return `${prefix} encountered errors while loading and may not function as expected.`;\n }\n }\n })();\n el.innerHTML = html;\n\n if (error != null) {\n const wrapper = document.createElement(\"div\");\n wrapper.style.overflow = \"auto\";\n wrapper.style.height = \"5em\";\n wrapper.style.resize = \"vertical\";\n const content = document.createElement(\"div\");\n content.style.fontFamily = \"monospace\";\n content.style.whiteSpace = \"pre-wrap\";\n content.style.backgroundColor = \"rgb(255, 221, 221)\";\n content.textContent = error.stack ?? error.toString();\n wrapper.append(content);\n el.append(wrapper);\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(() => display_loaded(error), 100);\n }\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n\n root._bokeh_onload_callbacks.push(callback);\n if (root._bokeh_is_loading > 0) {\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls == null || js_urls.length === 0) {\n run_callbacks();\n return null;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n root._bokeh_is_loading = css_urls.length + js_urls.length;\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n\n function on_error(url) {\n console.error(\"failed to load \" + url);\n }\n\n for (let i = 0; i < css_urls.length; i++) {\n const url = css_urls[i];\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error.bind(null, url);\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n }\n\n for (let i = 0; i < js_urls.length; i++) {\n const url = js_urls[i];\n const element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error.bind(null, url);\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.6.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.6.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.6.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.6.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-mathjax-3.6.3.min.js\"];\n const css_urls = [];\n\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {\n }\n ];\n\n function run_inline_js() {\n if (root.Bokeh !== undefined || force === true) {\n try {\n for (let i = 0; i < inline_js.length; i++) {\n inline_js[i].call(root, root.Bokeh);\n }\n\n } catch (error) {throw error;\n }} else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n } else if (force !== true) {\n const cell = $(document.getElementById(null)).parents('.cell').data().cell;\n cell.output_area.append_execute_result(NB_LOAD_WARNING)\n }\n }\n\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n run_inline_js();\n } else {\n load_libs(css_urls, js_urls, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n}(window));" + "application/vnd.bokehjs_load.v0+json": "'use strict';\n(function(root) {\n function now() {\n return new Date();\n }\n\n const force = true;\n\n if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n root._bokeh_onload_callbacks = [];\n root._bokeh_is_loading = undefined;\n }\n\n\n if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n const NB_LOAD_WARNING = {'data': {'text/html':\n \"
\\n\"+\n \"

\\n\"+\n \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n \"

\\n\"+\n \"\\n\"+\n \"\\n\"+\n \"from bokeh.resources import INLINE\\n\"+\n \"output_notebook(resources=INLINE)\\n\"+\n \"\\n\"+\n \"
\"}};\n\n function display_loaded(error = null) {\n const el = document.getElementById(null);\n if (el != null) {\n const html = (() => {\n if (typeof root.Bokeh === \"undefined\") {\n if (error == null) {\n return \"BokehJS is loading ...\";\n } else {\n return \"BokehJS failed to load.\";\n }\n } else {\n const prefix = `BokehJS ${root.Bokeh.version}`;\n if (error == null) {\n return `${prefix} successfully loaded.`;\n } else {\n return `${prefix} encountered errors while loading and may not function as expected.`;\n }\n }\n })();\n el.innerHTML = html;\n\n if (error != null) {\n const wrapper = document.createElement(\"div\");\n wrapper.style.overflow = \"auto\";\n wrapper.style.height = \"5em\";\n wrapper.style.resize = \"vertical\";\n const content = document.createElement(\"div\");\n content.style.fontFamily = \"monospace\";\n content.style.whiteSpace = \"pre-wrap\";\n content.style.backgroundColor = \"rgb(255, 221, 221)\";\n content.textContent = error.stack ?? error.toString();\n wrapper.append(content);\n el.append(wrapper);\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(() => display_loaded(error), 100);\n }\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n\n root._bokeh_onload_callbacks.push(callback);\n if (root._bokeh_is_loading > 0) {\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls == null || js_urls.length === 0) {\n run_callbacks();\n return null;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n root._bokeh_is_loading = css_urls.length + js_urls.length;\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n\n function on_error(url) {\n console.error(\"failed to load \" + url);\n }\n\n for (let i = 0; i < css_urls.length; i++) {\n const url = css_urls[i];\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error.bind(null, url);\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n }\n\n for (let i = 0; i < js_urls.length; i++) {\n const url = js_urls[i];\n const element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error.bind(null, url);\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.7.0.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.7.0.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.7.0.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.7.0.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-mathjax-3.7.0.min.js\"];\n const css_urls = [];\n\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {\n }\n ];\n\n function run_inline_js() {\n if (root.Bokeh !== undefined || force === true) {\n try {\n for (let i = 0; i < inline_js.length; i++) {\n inline_js[i].call(root, root.Bokeh);\n }\n\n } catch (error) {throw error;\n }} else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n } else if (force !== true) {\n const cell = $(document.getElementById(null)).parents('.cell').data().cell;\n cell.output_area.append_execute_result(NB_LOAD_WARNING)\n }\n }\n\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n run_inline_js();\n } else {\n load_libs(css_urls, js_urls, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n}(window));" }, "metadata": {}, "output_type": "display_data" @@ -451,7 +451,7 @@ " Please note that data are subject to terms of use,\n", " for more information see \n", " the MalariaGEN website or contact support@malariagen.net.\n", - " See also the Adir1 API docs.\n", + " See also the Adir1 API docs.\n", " \n", " \n", " \n", @@ -489,7 +489,7 @@ " \n", " Software version\n", " \n", - " malariagen_data 15.6.0.post407+1430baf\n", + " malariagen_data 15.7.0\n", " \n", " \n", " \n", @@ -526,7 +526,7 @@ "Results cache : None\n", "Cohorts analysis : 20260303\n", "Site filters analysis : dt_20260301\n", - "Software version : malariagen_data 15.6.0.post407+1430baf\n", + "Software version : malariagen_data 15.7.0\n", "Client location : Iowa, United States (Google Cloud us-central1)\n", "Data filtered to unrestricted use only: False\n", "Data filtered to surveillance use only: False\n", @@ -535,7 +535,7 @@ "Please note that data are subject to terms of use,\n", "for more information see https://www.malariagen.net/data\n", "or contact support@malariagen.net. For API documentation see \n", - "https://malariagen.github.io/malariagen-data-python/v15.6.0.post407+1430baf/Adir1.html" + "https://malariagen.github.io/malariagen-data-python/v15.7.0/Adir1.html" ] }, "execution_count": 3, @@ -570,11 +570,11 @@ "height": 927 }, "execution": { - "iopub.execute_input": "2026-04-18T15:31:11.736128Z", - "iopub.status.busy": "2026-04-18T15:31:11.735097Z", - "iopub.status.idle": "2026-04-18T15:31:11.802547Z", - "shell.execute_reply": "2026-04-18T15:31:11.801994Z", - "shell.execute_reply.started": "2026-04-18T15:31:11.736105Z" + "iopub.execute_input": "2026-04-27T16:58:13.820546Z", + "iopub.status.busy": "2026-04-27T16:58:13.819966Z", + "iopub.status.idle": "2026-04-27T16:58:13.937483Z", + "shell.execute_reply": "2026-04-27T16:58:13.936715Z", + "shell.execute_reply.started": "2026-04-27T16:58:13.820524Z" }, "id": "b4ADQTOfQH_2", "outputId": "f7c6d68b-053f-4698-8b6f-29720287c423", @@ -619,10 +619,10 @@ " 272\n", " 1357-VO-BR-SALLUM\n", " https://www.malariagen.net/partner_study/1357-...\n", - " 2027-11-30\n", - " https://www.malariagen.net/data/our-approach-s...\n", + " 2026-03-26\n", + " https://www.science.org/doi/10.1126/science.ad...\n", " 1.0\n", - " False\n", + " True\n", " \n", " \n", " 1\n", @@ -630,10 +630,10 @@ " 139\n", " 1358-VO-GF-GENDRIN\n", " https://www.malariagen.net/partner_study/1358-...\n", - " 2027-11-30\n", - " https://www.malariagen.net/data/our-approach-s...\n", + " 2026-03-26\n", + " https://www.science.org/doi/10.1126/science.ad...\n", " 1.0\n", - " False\n", + " True\n", " \n", " \n", " 2\n", @@ -641,10 +641,10 @@ " 18\n", " 1359-VO-GY-NILES-ROBIN\n", " https://www.malariagen.net/partner_study/1359-...\n", - " 2027-11-30\n", - " https://www.malariagen.net/data/our-approach-s...\n", + " 2026-03-26\n", + " https://www.science.org/doi/10.1126/science.ad...\n", " 1.0\n", - " False\n", + " True\n", " \n", " \n", " 3\n", @@ -652,10 +652,10 @@ " 89\n", " 1360-VO-PE-GAMBOA\n", " https://www.malariagen.net/partner_study/1360-...\n", - " 2027-11-30\n", - " https://www.malariagen.net/data/our-approach-s...\n", + " 2026-03-26\n", + " https://www.science.org/doi/10.1126/science.ad...\n", " 1.0\n", - " False\n", + " True\n", " \n", " \n", " 4\n", @@ -663,10 +663,10 @@ " 126\n", " 1361-VO-VE-GRILLET\n", " https://www.malariagen.net/partner_study/1361-...\n", - " 2027-11-30\n", - " https://www.malariagen.net/data/our-approach-s...\n", + " 2026-03-26\n", + " https://www.science.org/doi/10.1126/science.ad...\n", " 1.0\n", - " False\n", + " True\n", " \n", " \n", " 5\n", @@ -674,10 +674,10 @@ " 449\n", " 1362-VO-CO-QUINONES\n", " https://www.malariagen.net/partner_study/1362-...\n", - " 2027-11-30\n", - " https://www.malariagen.net/data/our-approach-s...\n", + " 2026-03-26\n", + " https://www.science.org/doi/10.1126/science.ad...\n", " 1.0\n", - " False\n", + " True\n", " \n", " \n", "\n", @@ -693,20 +693,20 @@ "5 1362-VO-CO-QUINONES-VMF00331 449 1362-VO-CO-QUINONES \n", "\n", " study_url terms_of_use_expiry_date \\\n", - "0 https://www.malariagen.net/partner_study/1357-... 2027-11-30 \n", - "1 https://www.malariagen.net/partner_study/1358-... 2027-11-30 \n", - "2 https://www.malariagen.net/partner_study/1359-... 2027-11-30 \n", - "3 https://www.malariagen.net/partner_study/1360-... 2027-11-30 \n", - "4 https://www.malariagen.net/partner_study/1361-... 2027-11-30 \n", - "5 https://www.malariagen.net/partner_study/1362-... 2027-11-30 \n", + "0 https://www.malariagen.net/partner_study/1357-... 2026-03-26 \n", + "1 https://www.malariagen.net/partner_study/1358-... 2026-03-26 \n", + "2 https://www.malariagen.net/partner_study/1359-... 2026-03-26 \n", + "3 https://www.malariagen.net/partner_study/1360-... 2026-03-26 \n", + "4 https://www.malariagen.net/partner_study/1361-... 2026-03-26 \n", + "5 https://www.malariagen.net/partner_study/1362-... 2026-03-26 \n", "\n", " terms_of_use_url release unrestricted_use \n", - "0 https://www.malariagen.net/data/our-approach-s... 1.0 False \n", - "1 https://www.malariagen.net/data/our-approach-s... 1.0 False \n", - "2 https://www.malariagen.net/data/our-approach-s... 1.0 False \n", - "3 https://www.malariagen.net/data/our-approach-s... 1.0 False \n", - "4 https://www.malariagen.net/data/our-approach-s... 1.0 False \n", - "5 https://www.malariagen.net/data/our-approach-s... 1.0 False " + "0 https://www.science.org/doi/10.1126/science.ad... 1.0 True \n", + "1 https://www.science.org/doi/10.1126/science.ad... 1.0 True \n", + "2 https://www.science.org/doi/10.1126/science.ad... 1.0 True \n", + "3 https://www.science.org/doi/10.1126/science.ad... 1.0 True \n", + "4 https://www.science.org/doi/10.1126/science.ad... 1.0 True \n", + "5 https://www.science.org/doi/10.1126/science.ad... 1.0 True " ] }, "execution_count": 4, @@ -750,11 +750,11 @@ "height": 661 }, "execution": { - "iopub.execute_input": "2026-04-18T15:31:11.803875Z", - "iopub.status.busy": "2026-04-18T15:31:11.803690Z", - "iopub.status.idle": "2026-04-18T15:31:12.153697Z", - "shell.execute_reply": "2026-04-18T15:31:12.153223Z", - "shell.execute_reply.started": "2026-04-18T15:31:11.803857Z" + "iopub.execute_input": "2026-04-27T16:58:25.946292Z", + "iopub.status.busy": "2026-04-27T16:58:25.946008Z", + "iopub.status.idle": "2026-04-27T16:58:26.628528Z", + "shell.execute_reply": "2026-04-27T16:58:26.627893Z", + "shell.execute_reply.started": "2026-04-27T16:58:25.946269Z" }, "id": "-V8nLGSaQH_4", "outputId": "98a12919-fd6a-4fd5-8155-d90f05d877d7", @@ -1193,11 +1193,11 @@ "base_uri": "https://localhost:8080/" }, "execution": { - "iopub.execute_input": "2026-04-18T15:31:12.154633Z", - "iopub.status.busy": "2026-04-18T15:31:12.154296Z", - "iopub.status.idle": "2026-04-18T15:31:12.159508Z", - "shell.execute_reply": "2026-04-18T15:31:12.158944Z", - "shell.execute_reply.started": "2026-04-18T15:31:12.154613Z" + "iopub.execute_input": "2026-04-27T16:58:28.343303Z", + "iopub.status.busy": "2026-04-27T16:58:28.342970Z", + "iopub.status.idle": "2026-04-27T16:58:28.350641Z", + "shell.execute_reply": "2026-04-27T16:58:28.350203Z", + "shell.execute_reply.started": "2026-04-27T16:58:28.343280Z" }, "id": "PpsTgviZQH_4", "outputId": "ddbc9515-25dc-454f-9f02-9427f1261b06", @@ -1243,11 +1243,11 @@ "height": 430 }, "execution": { - "iopub.execute_input": "2026-04-18T15:31:12.160304Z", - "iopub.status.busy": "2026-04-18T15:31:12.160116Z", - "iopub.status.idle": "2026-04-18T15:31:12.513114Z", - "shell.execute_reply": "2026-04-18T15:31:12.512494Z", - "shell.execute_reply.started": "2026-04-18T15:31:12.160285Z" + "iopub.execute_input": "2026-04-27T16:58:29.449729Z", + "iopub.status.busy": "2026-04-27T16:58:29.448787Z", + "iopub.status.idle": "2026-04-27T16:58:30.394959Z", + "shell.execute_reply": "2026-04-27T16:58:30.394318Z", + "shell.execute_reply.started": "2026-04-27T16:58:29.449684Z" }, "id": "433PD7k8jlNj", "outputId": "bc5e1b8d-f1f4-4008-df56-f577a9080561", @@ -1651,7 +1651,7 @@ " call_AD (variants, samples, alleles) int16 268GB dask.array<chunksize=(300000, 50, 4), meta=np.ndarray>\n", " call_genotype_mask (variants, samples, ploidy) bool 67GB dask.array<chunksize=(300000, 50, 2), meta=np.ndarray>\n", "Attributes:\n", - " contigs: ('2', '3', 'X')