add log and about widgets

Author: cudmore

src/pymapmanager/tests/interface/test_load_tif.py

@@ -0,0 +1,75 @@
+import pytest
+
+from pymapmanager.interface2 import PyMapManagerApp
+# from pymapmanager import stack
+from mapmanagercore.data import getTiffChannel_1
+
+from pymapmanager._logger import logger
+
+# this makes qapp be our PyMapManagerApp, it is derived from QApplication
+@pytest.fixture(scope="session")
+def qapp_cls():
+    return PyMapManagerApp
+
+def test_app(qtbot, qapp):
+    logger.info(f'app:{qapp}')
+
+def test_load_tiff(qapp):
+    tiffpath = getTiffChannel_1()
+
+    qapp.loadStackWidget(tiffpath)
+
+def test_stack_from_tif():
+    import pandas as pd
+    from mapmanagercore import MapAnnotations, MultiImageLoader
+
+    tiffpath = getTiffChannel_1()
+
+    loader = MultiImageLoader()
+    loader.read(tiffpath, channel=0)
+    # loader.read(tiffpath, channel=1)  # our core is defaulting to channel 1 (for brightest path)
+
+    map = MapAnnotations(loader,
+                        lineSegments=pd.DataFrame(),
+                        points=pd.DataFrame())
+
+    map.points[:]
+    map.segments[:]
+
+    print('map:', map)
+    print('map.points[:]:', map.points[:])
+    print('map.segments[:]:', map.segments[:])
+
+    # get one time point. Stack does this but it seems to be buggy
+    sessionID = 0
+    tp = map.getTimePoint(sessionID)
+
+    print('tp:', map)
+    print('tp.points[:]:', tp.points[:])
+    print('tp.segments[:]:', tp.segments[:])
+
+    if 1:
+        newSegmentID = tp.newSegment()
+        print('newSegmentID:', newSegmentID)
+
+        tp.appendSegmentPoint(newSegmentID, 10, 10, 0)
+        tp.appendSegmentPoint(newSegmentID, 20, 20, 0)
+        tp.appendSegmentPoint(newSegmentID, 30, 30, 0)
+        
+        # TODO: fix error if we pass in (0, 0, 0)
+        newSpineID = tp.addSpine(segmentId=newSegmentID, 
+                                x=10,
+                                y=10,
+                                z=10)
+        
+        print('=== after add segment and spine')
+        print('=== tp.points[:]:')
+        print(tp.points[:])
+        print('===tp.segments[:]:')
+        print(tp.segments[:])
+
+    # aStack = stack(zarrMap=map)
+
+if __name__ == '__main__':
+    test_stack_from_tif()
+    pass