diff --git a/.github/dependabot.yml b/.github/dependabot.yml index c6d88f0..e95382f 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -1,6 +1,6 @@ version: 2 updates: - - package-ecosystem: "pip" # Confusingly, pip is correct for poetry + - package-ecosystem: "pip" # Dependabot uses pip for uv-managed pyproject files directory: "/" # Location of package manifests schedule: interval: "monthly" diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index cf81e9d..3513a79 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -31,26 +31,19 @@ jobs: run: | ./start_services.sh --no-jupyter -d - - name: Install poetry - run: pipx install poetry + - name: Install uv + run: pipx install uv - name: Verify MLflow versions match run: ./scripts/check_mlflow_versions.sh - - name: Check poetry lock file - run: poetry check --lock - - - name: Remove existing virtual environment - run: | - poetry env remove python || true - - name: Install dependencies run: | - poetry cache clear --no-interaction --all . - poetry install --with test --no-cache + uv lock --check + uv sync --group test - name: Run all tests - run: MLFLOW_TRACKING_URI=http://localhost:8080 poetry run pytest + run: MLFLOW_TRACKING_URI=http://localhost:8080 uv run pytest - name: Stop MLflow server run: docker compose down @@ -79,7 +72,7 @@ jobs: - name: Execute all notebooks run: | - docker exec modelplane-jupyter-1 poetry run python /app/test_notebooks.py + docker exec modelplane-jupyter-1 uv run python /app/test_notebooks.py - name: Stop MLflow server run: docker compose down diff --git a/.gitignore b/.gitignore index eed1bde..78eae00 100644 --- a/.gitignore +++ b/.gitignore @@ -11,3 +11,4 @@ secrets.toml *.txt *.json *.jsonl +modelplane.egg-info/ diff --git a/Dockerfile.jupyter b/Dockerfile.jupyter index bd68377..d5138c6 100644 --- a/Dockerfile.jupyter +++ b/Dockerfile.jupyter @@ -4,22 +4,21 @@ ENV PATH="/root/.local/bin:$PATH" # Used for the notebook server WORKDIR /app -# pipx needed for poetry installation +# pipx needed for uv installation script # ssh client needed for installing private modelbench dependencies # git needed dvc RUN apt-get update && apt-get install -y pipx openssh-client git && \ - pipx install poetry -COPY pyproject.toml poetry.lock README.md ./ + pipx install uv +COPY pyproject.toml uv.lock README.md ./ RUN mkdir -p /root/.ssh && chmod 700 /root/.ssh RUN git config --global core.sshCommand "ssh -o UserKnownHostsFile=/root/.ssh/known_hosts -o ForwardAgent=yes" RUN ssh-keyscan github.com > /root/.ssh/known_hosts -RUN poetry install --no-interaction --no-ansi --no-root +RUN uv sync --frozen --no-install-project COPY src/ ./src/ -RUN echo $(poetry env info --path) -RUN poetry install --no-interaction --no-ansi +RUN uv sync --frozen EXPOSE 8888 -CMD ["poetry", "run", "jupyter", "notebook", "--ip", "0.0.0.0", "--allow-root", "--no-browser", "--ServerApp.root_dir=/app/flightpaths"] +CMD ["uv", "run", "jupyter", "notebook", "--ip", "0.0.0.0", "--allow-root", "--no-browser", "--ServerApp.root_dir=/app/flightpaths"] diff --git a/Dockerfile.mlflow b/Dockerfile.mlflow index f1396e5..42eacaa 100644 --- a/Dockerfile.mlflow +++ b/Dockerfile.mlflow @@ -3,5 +3,5 @@ FROM ghcr.io/mlflow/mlflow:v3.7.0 # The base image does not include various dependencies that are needed for # the MLflow server. We assume a postgres backend, so we need psycopg2. # We also need boto3 for S3 support, and google-cloud-storage for GCS support. -RUN pip install mlflow[auth]==3.7.0 psycopg2-binary==2.9.11 boto3==1.42.43 \ +RUN pip install mlflow[auth]==3.7.0 psycopg2-binary==2.9.11 boto3==1.42.51 \ google-cloud-storage==3.9.0 diff --git a/Dockerfile.mockvllm b/Dockerfile.mockvllm index 272f707..aa0d68e 100644 --- a/Dockerfile.mockvllm +++ b/Dockerfile.mockvllm @@ -4,8 +4,9 @@ WORKDIR /app COPY tests/notebooks/mock_vllm_server.py . -# versions chosen to match whats in poetry.lock as of 2025-07-09 -RUN pip install fastapi==0.115.12 uvicorn==0.34.3 +# versions chosen to match whats in uv.lock as of 2026-02-18 +# TODO: maybe match the uv.lock, though it's not functionally important here +RUN pip install fastapi==0.129.0 uvicorn==0.41.0 EXPOSE ${VLLM_PORT} diff --git a/README.md b/README.md index 70a99b9..9c3d15e 100644 --- a/README.md +++ b/README.md @@ -79,31 +79,31 @@ Annotator and SUT responses will be cached (locally) unless you pass the ## CLI -You can also interact with modelplane via CLI. Run `poetry run modelplane --help` +You can also interact with modelplane via CLI. Run `uv run modelplane --help` for more details. *Important:* You must set the `MLFLOW_TRACKING_URI` environmental variable. For example, if you've brought up MLFlow using the fully local docker compose process above, you could run: ``` -MLFLOW_TRACKING_URI=http://localhost:8080 poetry run modelplane get-sut-responses --sut_id {sut_id} --prompts tests/data/prompts.csv --experiment expname +MLFLOW_TRACKING_URI=http://localhost:8080 uv run modelplane get-sut-responses --sut_id {sut_id} --prompts tests/data/prompts.csv --experiment expname ``` After running the command, you'd see the `run_id` in the output from mlflow, or you can get the `run_id` via the MLFlow UI. ### Basic Annotations ``` -MLFLOW_TRACKING_URI=http://localhost:8080 poetry run modelplane annotate --annotator_id {annotator_id} --experiment expname --response_run_id {run_id} +MLFLOW_TRACKING_URI=http://localhost:8080 uv run modelplane annotate --annotator_id {annotator_id} --experiment expname --response_run_id {run_id} ``` #### Private Ensemble If you have access to the private annotator, you can run directly with: ``` -MLFLOW_TRACKING_URI=http://localhost:8080 poetry run modelplane annotate --annotator_id safety-v1.1 --experiment expname --response_run_id {run_id} +MLFLOW_TRACKING_URI=http://localhost:8080 uv run modelplane annotate --annotator_id safety-v1.1 --experiment expname --response_run_id {run_id} ``` ### Custom Ensembles ``` -MLFLOW_TRACKING_URI=http://localhost:8080 poetry run modelplane annotate --annotator_id {annotator_id1} --annotator_id {annotator_id2} --ensemble_strategy {ensemble_strategy} --experiment expname --response_file path/to/response.csv +MLFLOW_TRACKING_URI=http://localhost:8080 uv run modelplane annotate --annotator_id {annotator_id1} --annotator_id {annotator_id2} --ensemble_strategy {ensemble_strategy} --experiment expname --response_file path/to/response.csv ``` diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index bd224d2..0000000 --- a/poetry.lock +++ /dev/null @@ -1,9199 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. - 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["cffi (>=1.17,<2.0)", "cffi (>=2.0.0b)"] - -[metadata] -lock-version = "2.0" -python-versions = ">=3.12,!=3.12.5,<4" -content-hash = "6c268a69fc5c97d41390a1695f8ac537f85d629ae9f8dfa5832324d02fc9721f" diff --git a/pyproject.toml b/pyproject.toml index d0ff0bf..c0249c9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,47 +1,54 @@ -[tool.poetry] +[project] name = "modelplane" version = "0.1.0" description = "" -authors = ["MLCommons AI Safety "] -license = "Apache-2.0" readme = "README.md" -packages = [ - { include = "modelplane", from = "src" }, +license = { text = "Apache-2.0" } +authors = [ + { name = "MLCommons AI Safety", email = "ai-safety-engineering@mlcommons.org" }, +] +requires-python = ">=3.12,!=3.12.5,<4" +dependencies = [ + "click>=8,<9", + "dvc[gs]>=3.60,<4", + "mlflow[auth]==3.7.0", + "python-dotenv>=1,<2", + "requests>=2,<3", + "prometheus-client", + "jsonlines>=4,<5", + "numpy>=2,<3", + "matplotlib>=3,<4", + "jupyter>=1,<2", + "jupyterlab-git", + "scikit-learn>=1.5.0,<2.0.0", + "pandas>=2.2.2,<3", + "modelbench @ git+https://github.com/mlcommons/modelbench.git", ] -[tool.poetry.dependencies] -python = ">=3.12,!=3.12.5,<4" -click = "^8" -dvc = {extras = ["gs"], version = "^3.60"} -mlflow = { extras = ["auth"], version = "3.7.0" } -python-dotenv = "^1" -requests = "^2" -prometheus-client = "*" # version controlled by dependencies -jsonlines = "^4" -numpy = "^2" -matplotlib = "^3" -jupyter = "^1" -jupyterlab-git = "*" -scikit-learn = "^1.5.0" -pandas = "^2.2.2" -modelbench = {git = "https://github.com/mlcommons/modelbench.git" } - -[tool.poetry.group.dev.dependencies] -ipython = "<9" +[project.scripts] +modelplane = "modelplane.cli:cli" -[tool.poetry.group.test.dependencies] -pytest = "^8" -pytest-cov = "^6" +[dependency-groups] +dev = [ + "ipython<9", +] +test = [ + "pytest>=8,<9", + "pytest-cov>=6,<7", +] +mlflow = [ + "psycopg2-binary>=2.9.10,<3", + "boto3>=1.38.31,<2", + "google-cloud-storage>=3.1.0,<4", +] -[tool.poetry.group.mlflow.dependencies] -psycopg2-binary = "^2.9.10" -boto3 = "^1.38.31" -google-cloud-storage = "^3.1.0" +[tool.setuptools] +package-dir = {"" = "src"} -[tool.poetry.scripts] -modelplane = "modelplane.cli:cli" +[tool.setuptools.packages.find] +where = ["src"] +include = ["modelplane", "modelplane.*"] [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" - +requires = ["setuptools>=64", "wheel"] +build-backend = "setuptools.build_meta" diff --git a/scripts/check_mlflow_versions.sh b/scripts/check_mlflow_versions.sh index 9b23731..c5f0b0a 100755 --- a/scripts/check_mlflow_versions.sh +++ b/scripts/check_mlflow_versions.sh @@ -1,20 +1,38 @@ #!/usr/bin/env bash set -uo pipefail -pyproject="pyproject.toml" dockerfile="Dockerfile.mlflow" -poetry_lock="poetry.lock" +uv_lock="uv.lock" -for file in "${pyproject}" "${dockerfile}" "${poetry_lock}"; do +for file in "${dockerfile}" "${uv_lock}"; do [[ -f "${file}" ]] || { echo "Missing ${file}" >&2; exit 1; } done -pyproject_mlflow_version="$(grep '^mlflow[[:space:]]*=' "${pyproject}" | head -n1 | sed -E 's/.*version[[:space:]]*=[[:space:]]*"([^"]+)".*/\1/')" -if [[ -z "${pyproject_mlflow_version}" ]]; then - echo "Unable to determine mlflow version from ${pyproject}" >&2 +read_lock_version() { + local pkg_path="$1" + local pkg_name="$2" + python - "${pkg_path}" "${pkg_name}" <<'PY' +import sys +import tomllib + +path, pkg = sys.argv[1:3] +pkg = pkg.lower() + +with open(path, "rb") as fp: + data = tomllib.load(fp) + +for package in data.get("package", []): + if package.get("name", "").lower() == pkg: + print(package.get("version", "")) + break +PY +} + +lock_mlflow_version="$(read_lock_version "${uv_lock}" "mlflow")" +if [[ -z "${lock_mlflow_version}" ]]; then + echo "Unable to determine mlflow version from ${uv_lock}" >&2 exit 1 fi - docker_image_version="$(head -n1 "${dockerfile}" | cut -d ':' -f2 | tr -d 'v')" if [[ -z "${docker_image_version}" ]]; then echo "Unable to determine base image version from ${dockerfile}" >&2 @@ -28,13 +46,13 @@ fi mismatches=0 -if [[ "${pyproject_mlflow_version}" != "${docker_image_version}" ]]; then - echo "Mismatch: pyproject mlflow (${pyproject_mlflow_version}) vs Docker base (${docker_image_version})" >&2 +if [[ "${lock_mlflow_version}" != "${docker_image_version}" ]]; then + echo "Mismatch: uv.lock mlflow (${lock_mlflow_version}) vs Docker base (${docker_image_version})" >&2 mismatches=$((mismatches + 1)) fi -if [[ "${pyproject_mlflow_version}" != "${docker_mlflow_version}" ]]; then - echo "Mismatch: pyproject mlflow (${pyproject_mlflow_version}) vs Docker pip install (${docker_mlflow_version})" >&2 +if [[ "${lock_mlflow_version}" != "${docker_mlflow_version}" ]]; then + echo "Mismatch: uv.lock mlflow (${lock_mlflow_version}) vs Docker pip install (${docker_mlflow_version})" >&2 mismatches=$((mismatches + 1)) fi @@ -43,22 +61,17 @@ check_dep() { local token token="$(grep -o "${pkg}==[^[:space:]]*" "${dockerfile}" | head -n1)" local docker_version="${token##*==}" - local lock_version_value="$(\ - poetry show "${pkg}" 2>/dev/null \ - | sed -n 's/version[[:space:]]*: //p' \ - | head -n1 \ - | tr -d '[:space:]' - )" + local lock_version_value="$(read_lock_version "${uv_lock}" "${pkg}")" if [[ -z "${docker_version}" || -z "${lock_version_value}" ]]; then - echo "Unable to resolve ${pkg} in Dockerfile or poetry.lock" >&2 + echo "Unable to resolve ${pkg} in Dockerfile or uv.lock" >&2 mismatches=$((mismatches + 1)) return fi if [[ "${docker_version}" != "${lock_version_value}" ]]; then - echo "Mismatch: ${pkg} Docker (${docker_version}) vs poetry.lock (${lock_version_value})" >&2 + echo "Mismatch: ${pkg} Docker (${docker_version}) vs uv.lock (${lock_version_value})" >&2 mismatches=$((mismatches + 1)) fi } @@ -72,4 +85,4 @@ if [[ ${mismatches} -ne 0 ]]; then exit 1 fi -echo "Dependency versions are consistent (${pyproject_mlflow_version})." +echo "Dependency versions are consistent (${lock_mlflow_version})." diff --git a/scripts/run_flightpaths_locally.sh b/scripts/run_flightpaths_locally.sh index f875499..d1e1c55 100755 --- a/scripts/run_flightpaths_locally.sh +++ b/scripts/run_flightpaths_locally.sh @@ -1,4 +1,24 @@ -./start_services.sh -d --vllm +#!/usr/bin/env bash +set -uo pipefail + +uv lock --check +uv sync + +services_started=false +cleanup() { + local exit_code=$? + if [[ "${services_started}" == "true" ]]; then + docker compose down + fi + exit ${exit_code} +} +trap cleanup EXIT + +if ./start_services.sh -d --vllm; then + services_started=true +else + exit 1 +fi + docker cp tests/notebooks/run.py modelplane-jupyter-1:/app/test_notebooks.py -docker exec modelplane-jupyter-1 poetry run python /app/test_notebooks.py -docker compose down +docker exec modelplane-jupyter-1 uv run python /app/test_notebooks.py diff --git a/scripts/run_tests_locally.sh b/scripts/run_tests_locally.sh index c7d3c46..2468fe4 100755 --- a/scripts/run_tests_locally.sh +++ 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