diff --git a/.gitignore b/.gitignore
index ca98aa1..b01aba3 100644
--- a/.gitignore
+++ b/.gitignore
@@ -88,6 +88,8 @@ typings/
 # Claude files
 .claude.json
 .claude/
+CLAUDE.md
+PROJECT_STATUS.md
 
 # Vite
 .vite/
diff --git a/MANIFEST.md b/MANIFEST.md
index 1bb7f50..8ba7fa2 100644
--- a/MANIFEST.md
+++ b/MANIFEST.md
@@ -403,11 +403,9 @@ Four server types are supported:
 - **`node`**: Node.js server with bundled dependencies
 - **`python`**: Python server with bundled dependencies
 - **`binary`**: Compiled executable
-- **`uv`**: Python server using UV runtime (experimental, v0.4+)
+- **`uv`**: Python server using UV runtime (v0.4+)
 
-### UV Runtime (Experimental, v0.4+)
-
-> **Note:** UV runtime support is experimental and may change in future versions.
+### UV Runtime (v0.4+)
 
 The `uv` server type enables cross-platform Python extensions without bundling dependencies. Instead, dependencies are declared in `pyproject.toml` and installed by the host application using UV.
 
diff --git a/README.md b/README.md
index 34aaaf5..d9f1fbe 100644
--- a/README.md
+++ b/README.md
@@ -109,7 +109,7 @@ bundle.mcpb (ZIP file)
 
 ### Bundling Dependencies
 
-**UV Runtime (Experimental - v0.4+):**
+**UV Runtime (v0.4+):**
 
 - Use `server.type = "uv"` in manifest
 - Include `pyproject.toml` with dependencies (no bundled packages needed)
diff --git a/examples/file-manager-python/.mcpbignore b/examples/file-manager-python/.mcpbignore
new file mode 100644
index 0000000..f753254
--- /dev/null
+++ b/examples/file-manager-python/.mcpbignore
@@ -0,0 +1,7 @@
+.venv/
+__pycache__/
+*.pyc
+.pytest_cache/
+.mypy_cache/
+*.egg-info/
+uv.lock
diff --git a/examples/file-manager-python/manifest.json b/examples/file-manager-python/manifest.json
index 964b2aa..69b43e2 100644
--- a/examples/file-manager-python/manifest.json
+++ b/examples/file-manager-python/manifest.json
@@ -1,28 +1,28 @@
 {
-  "$schema": "../../dist/mcpb-manifest.schema.json",
-  "manifest_version": "0.1",
+  "manifest_version": "0.4",
   "name": "file-manager-python",
   "display_name": "Python File Manager MCP",
-  "version": "0.1.0",
+  "version": "0.2.0",
   "description": "A Python MCP server for file operations",
-  "long_description": "This extension provides file management capabilities through a Python MCP server. It demonstrates Python-based MCP Bundle development, including file operations, directory management, and proper MCP protocol implementation.",
+  "long_description": "This extension provides file management capabilities through a Python MCP server. It demonstrates Python-based MCP Bundle development using UV runtime, including file operations, directory management, and proper MCP protocol implementation.",
   "author": {
     "name": "Anthropic",
     "email": "support@anthropic.com",
     "url": "https://github.com/anthropics"
   },
   "server": {
-    "type": "python",
+    "type": "uv",
     "entry_point": "server/main.py",
     "mcp_config": {
-      "command": "python",
+      "command": "uv",
       "args": [
-        "${__dirname}/server/main.py",
+        "run",
+        "--directory", "${__dirname}",
+        "server/main.py",
         "--workspace=${user_config.workspace_directory}"
       ],
       "env": {
-        "DEBUG": "${user_config.debug_mode}",
-        "PYTHONPATH": "${__dirname}/server/lib"
+        "DEBUG": "${user_config.debug_mode}"
       }
     }
   },
@@ -62,8 +62,7 @@
     "claude_desktop": ">=0.10.0",
     "platforms": ["darwin", "win32", "linux"],
     "runtimes": {
-      "python": ">=3.8.0 <4"
+      "python": ">=3.10.0 <4"
     }
-  },
-  "privacy_policies": []
+  }
 }
diff --git a/examples/file-manager-python/pyproject.toml b/examples/file-manager-python/pyproject.toml
index 7895f32..5a1e799 100644
--- a/examples/file-manager-python/pyproject.toml
+++ b/examples/file-manager-python/pyproject.toml
@@ -1,31 +1,8 @@
-[build-system]
-requires = ["setuptools>=42", "wheel"]
-build-backend = "setuptools.build_meta"
-
 [project]
 name = "file-manager-python"
-version = "0.1.0"
+version = "0.2.0"
 description = "A Python MCP server for file operations"
-authors = [
-    {name = "Anthropic", email = "support@anthropic.com"}
+requires-python = ">=3.10"
+dependencies = [
+    "mcp>=1.0.0",
 ]
-license = {text = "MIT"}
-classifiers = [
-    "Private :: Do Not Upload"  # Prevents accidental uploads to PyPI
-]
-
-[project.dependencies]
-mcp = ">=1.0.0"
-trio = ">=0.22.0"
-
-[tool.setuptools]
-packages = ["server"]
-
-[project.scripts]
-bundle-deps = "python:install_deps"
-
-# Custom scripts section for DXT development
-[tool.dxt]
-bundle = "pip install \"mcp[all]\" --target server/lib --upgrade --force-reinstall"
-test = "python server/main.py --debug"
-pack = "npx @anthropic-ai/dxt pack"
\ No newline at end of file
diff --git a/examples/file-manager-python/requirements.txt b/examples/file-manager-python/requirements.txt
deleted file mode 100644
index d90d65c..0000000
--- a/examples/file-manager-python/requirements.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-mcp>=1.0.0
-trio>=0.22.0
diff --git a/examples/hello-world-node/server/index.js b/examples/hello-world-node/server/index.js
index 03efb72..1d68293 100644
--- a/examples/hello-world-node/server/index.js
+++ b/examples/hello-world-node/server/index.js
@@ -64,7 +64,13 @@ server.setRequestHandler(CallToolRequestSchema, async (request) => {
 });
 
 // Start the server
-const transport = new StdioServerTransport();
-server.connect(transport);
+async function main() {
+  const transport = new StdioServerTransport();
+  await server.connect(transport);
+  console.error("Hello World MCP server running...");
+}
 
-console.error("Hello World MCP server running...");
+main().catch((error) => {
+  console.error("Fatal error in main():", error);
+  process.exit(1);
+});
diff --git a/examples/hello-world-uv/README.md b/examples/hello-world-uv/README.md
index ae898df..853bb06 100644
--- a/examples/hello-world-uv/README.md
+++ b/examples/hello-world-uv/README.md
@@ -1,6 +1,4 @@
-# Hello World UV Runtime Example (Experimental)
-
-> **Note:** UV runtime support is experimental and may change in future versions.
+# Hello World UV Runtime Example
 
 This example demonstrates a minimal MCP server using **UV runtime**.
 
@@ -28,7 +26,7 @@ hello-world-uv/
 **UV Runtime** (this example):
 - `server.type = "uv"`
 - No bundled dependencies
-- No `mcp_config` needed
+- `mcp_config` uses `uv run` to auto-resolve deps from `pyproject.toml`
 - Small bundle size (~2 KB)
 - Works on any platform
 
diff --git a/examples/hello-world-uv/manifest.json b/examples/hello-world-uv/manifest.json
index f3d3b4a..534ef4d 100644
--- a/examples/hello-world-uv/manifest.json
+++ b/examples/hello-world-uv/manifest.json
@@ -10,7 +10,11 @@
   "icon": "icon.png",
   "server": {
     "type": "uv",
-    "entry_point": "src/server.py"
+    "entry_point": "src/server.py",
+    "mcp_config": {
+      "command": "uv",
+      "args": ["run", "--directory", "${__dirname}", "src/server.py"]
+    }
   },
   "compatibility": {
     "platforms": ["darwin", "linux", "win32"],
diff --git a/src/schemas/0.4.ts b/src/schemas/0.4.ts
index e044b91..ae97d17 100644
--- a/src/schemas/0.4.ts
+++ b/src/schemas/0.4.ts
@@ -1,5 +1,4 @@
 // v0.4: Adds UV runtime support for Python extensions
-// NOTE: This schema version is experimental and subject to change.
 import * as z from "zod";
 
 export const MANIFEST_VERSION = "0.4";
diff --git a/src/schemas_loose/0.4.ts b/src/schemas_loose/0.4.ts
index d75eed3..395fd60 100644
--- a/src/schemas_loose/0.4.ts
+++ b/src/schemas_loose/0.4.ts
@@ -1,5 +1,4 @@
 // v0.4: Adds UV runtime support for Python extensions
-// NOTE: This schema version is experimental and subject to change.
 import * as z from "zod";
 
 export const MANIFEST_VERSION = "0.4";
diff --git a/src/shared/constants.ts b/src/shared/constants.ts
index 4dd48a5..a7c460a 100644
--- a/src/shared/constants.ts
+++ b/src/shared/constants.ts
@@ -15,7 +15,7 @@ export const LATEST_MANIFEST_VERSION = "0.4" as const;
 /**
  * Default manifest version for new packages
  */
-export const DEFAULT_MANIFEST_VERSION = "0.2" as const;
+export const DEFAULT_MANIFEST_VERSION = "0.3" as const;
 
 /**
  * Map of manifest versions to their strict schemas