0_code_data

Code and data

This thesis has been written in GNU Linux Operating System and tested in Ubuntu 14.04.5 LTS, Ubuntu 16.04.2 LTS and Ubuntu 18.04 LTS For its replication, it is suggested that users install either Ubuntu 14.04.5 LTS, Ubuntu 16.04.2 LTS and Ubuntu 18.04 LTS (other GNU Linux distributions can also work) with the latest version of R and its dependencies including GNU Octave version 4.0.2 (see here for installation of dependencies).

Organisation of paths

0_data contains all the input data that is either retrieved from external sources or created manually. The core principle here is that nothing in this folder should ever be modified. The data in this folder should remain identical to the way that you have retrieved or manually created it.

1_code contains for all code files. This includes:

• 0_machineinfo
• 2_libraries_functions
• 1_dependencies
• 3_anthropometrics
• 4_figs_ch3
• 5_creation_of_curated_timeseries
• 6_figs_ch4
• 7_figs_ch5
• 8_figs_ch6
• 9_figs_appendixes
• x_surrogate

Replication of results

For figure replication, the paths are organised as follows:

• /code contains R scripts that create figures in
• /scr, and
• /vector which contains the vector files.

Clone github repository

mkdir -p $HOME/phd && cd $HOME/phd 
git clone https://github.com/mxochicale-phd/thesis
# create temporal paths
mkdir -p $HOME/phd/tmp/phdtmpdata