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Setting up paths for packages and functions

The following lines are code extracs to call either (i) nonlinearTseries packages or (ii) different R functions.

nonlinearTseries

################################################################################
# (0) Defining paths for main_path, r_scripts_path, ..., etc.
homepath <- Sys.getenv("HOME")
setwd("../../../../")
github_repo_path <- getwd()
libfun_path <- '/0_code_data/1_code/2_libraries_functions'
library(devtools)
load_all(paste(github_repo_path, libfun_path, '/nonlinearTseries', sep=""))

cao97

NOTE Remember to source the cao97_functions.R and cao97sub.so

homepath <- Sys.getenv("HOME")
github_path <- '/phd/thesis'
path_cao97_functions_R <- '/0_code_data/1_code/2_libraries_functions/rfunctions/embedding_parameters/withCao1997/cao97_functions.R'
################################################################################
## CAO's Algorithm
##
source(paste(github_path, path_cao97_functions_R, sep=''))

set up cao97sub.so at /0_code_data/1_code/2_libraries_functions/rfunctions/embedding_parameters/withCao1997/cao97_functions.R

#### Setting up paths
homepath <- Sys.getenv("HOME")
github_path <- '/phd/thesis'
path_cao97sub_so <- '/0_code_data/1_code/2_libraries_functions/rfunctions/embedding_parameters/withCao1997/cao97sub.so'

mutual information

cd $HOME/phd/thesis/0_code_data/1_code/2_libraries_functions/rfunctions/embedding_parameters/mututalInformation 
./minfo datafile -b 100 -t 100 > r.mi

R
> source(paste(getwd(),"/comparison-2methods.R", sep=""), echo=TRUE)
> source(paste(getwd(),"/comparison-3methods.R", sep=""), echo=TRUE)

extra_rqa.R

github_repo_path <- getwd()
libfun_path <- '/0_code_data/1_code/2_libraries_functions'
rfunctions_extra_rqa_R <- '/rfunctions/extra_rqa.R'

### Calling `functions_extra_nonlinearTseries` 
source( paste(github_repo_path, libfun_path, rfunctions_extra_rqa_R, sep='') )

ollin_cencah.R

github_repo_path <- getwd()
libfun_path <- '/0_code_data/1_code/2_libraries_functions'
rfunctions_ollin_cencah_R <- '/rfunctions/ollin_cencah.R'

### Calling `functions_ollin_cencah` 
source( paste(github_repo_path, libfun_path, rfunctions_ollin_cencah_R, sep='') )