diff --git a/modules/nf-core/macsyfinder/download/environment.yml b/modules/nf-core/macsyfinder/download/environment.yml new file mode 100644 index 00000000000..7feab3433e4 --- /dev/null +++ b/modules/nf-core/macsyfinder/download/environment.yml @@ -0,0 +1,7 @@ +--- +# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json +channels: + - conda-forge + - bioconda +dependencies: + - bioconda::macsyfinder=2.1.6 diff --git a/modules/nf-core/macsyfinder/download/main.nf b/modules/nf-core/macsyfinder/download/main.nf new file mode 100644 index 00000000000..3a0588818de --- /dev/null +++ b/modules/nf-core/macsyfinder/download/main.nf @@ -0,0 +1,39 @@ +process MACSYFINDER_DOWNLOAD { + tag "${model_name}" + label 'process_single' + + conda "${moduleDir}/environment.yml" + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://depot.galaxyproject.org/singularity/macsyfinder:2.1.6--pyhdfd78af_0' : + 'biocontainers/macsyfinder:2.1.6--pyhdfd78af_0' }" + + input: + val model_name + + output: + path "models" , emit: models + tuple val("${task.process}"), val('macsyfinder'), eval('macsyfinder --version 2>&1 | sed "1!d;s/^.*MacSyFinder //;s/ .*$//"'), topic: versions, emit: versions_macsyfinder + tuple val("${task.process}"), val('msf_data'), eval('msf_data --version 2>&1 | awk "NR==4{print \$2}"'), topic: versions, emit: versions_macsydata + + when: + task.ext.when == null || task.ext.when + + script: + def args = task.ext.args ?: '' + """ + # msf_data installs models into the current directory by default + # We'll create a models directory to store them + mkdir -p models + + msf_data install \\ + --target models \\ + ${args} \\ + ${model_name} + """ + + stub: + """ + mkdir -p models/${model_name} + touch models/${model_name}/definitions.txt + """ +} diff --git a/modules/nf-core/macsyfinder/download/meta.yml b/modules/nf-core/macsyfinder/download/meta.yml new file mode 100644 index 00000000000..780554ff36d --- /dev/null +++ b/modules/nf-core/macsyfinder/download/meta.yml @@ -0,0 +1,73 @@ +name: "macsyfinder_download" +description: Download MacSyFinder models using msf_data +keywords: + - genomics + - protein + - macromolecular systems + - models + - database +tools: + - "macsyfinder": + description: "Detection of macromolecular systems in protein datasets using systems\ + \ modelling and similarity search" + homepage: "https://github.com/gem-pasteur/macsyfinder" + documentation: "https://macsyfinder.readthedocs.io" + tool_dev_url: "https://github.com/gem-pasteur/macsyfinder" + doi: "10.24072/pcjournal.250" + licence: + - "GPL v3" + identifier: biotools:macsyfinder +input: + - model_name: + type: string + description: Name of the MacSyFinder model to download (e.g., 'TXSScan', 'CasFinder') +output: + models: + - models: + type: directory + description: Directory containing downloaded MacSyFinder model definitions + pattern: "models" + versions_macsyfinder: + - - ${task.process}: + type: string + description: The name of the process + - macsyfinder: + type: string + description: The name of the tool + - macsyfinder --version 2>&1 | sed "1!d;s/^.*MacSyFinder //;s/ .*$//": + type: eval + description: The expression to obtain the version of the tool + versions_macsydata: + - - ${task.process}: + type: string + description: The name of the process + - msf_data: + type: string + description: The name of the tool + - msf_data --version 2>&1 | awk "NR==4{print \$2}": + type: eval + description: The expression to obtain the version of the tool +topics: + versions: + - - ${task.process}: + type: string + description: The name of the process + - macsyfinder: + type: string + description: The name of the tool + - macsyfinder --version 2>&1 | sed "1!d;s/^.*MacSyFinder //;s/ .*$//": + type: eval + description: The expression to obtain the version of the tool + - - ${task.process}: + type: string + description: The name of the process + - msf_data: + type: string + description: The name of the tool + - msf_data --version 2>&1 | awk "NR==4{print \$2}": + type: eval + description: The expression to obtain the version of the tool +authors: + - "@brovolia" +maintainers: + - "@brovolia" diff --git a/modules/nf-core/macsyfinder/download/tests/main.nf.test b/modules/nf-core/macsyfinder/download/tests/main.nf.test new file mode 100644 index 00000000000..4dab89e4b1f --- /dev/null +++ b/modules/nf-core/macsyfinder/download/tests/main.nf.test @@ -0,0 +1,50 @@ +nextflow_process { + + name "Test Process MACSYFINDER_DOWNLOAD" + script "../main.nf" + process "MACSYFINDER_DOWNLOAD" + tag "modules" + tag "modules_nfcore" + tag "macsyfinder" + tag "macsyfinder/download" + + test("macsyfinder_download - TXSScan") { + + when { + process { + """ + input[0] = 'TXSScan' + """ + } + } + + then { + assertAll( + { assert process.success }, + { assert snapshot(sanitizeOutput(process.out)).match("txsscan_output") }, + { assert snapshot(process.out.findAll { key, val -> key.startsWith("versions") }).match("txsscan_versions") } + ) + } + } + + test("macsyfinder_download - TXSScan - stub") { + + options "-stub" + + when { + process { + """ + input[0] = 'TXSScan' + """ + } + } + + then { + assertAll( + { assert process.success }, + { assert snapshot(sanitizeOutput(process.out)).match("txsscan_stub_output") }, + { assert snapshot(process.out.findAll { key, val -> key.startsWith("versions") }).match("txsscan_stub_versions") } + ) + } + } +} diff --git a/modules/nf-core/macsyfinder/download/tests/main.nf.test.snap b/modules/nf-core/macsyfinder/download/tests/main.nf.test.snap new file mode 100644 index 00000000000..27386802bd0 --- /dev/null +++ b/modules/nf-core/macsyfinder/download/tests/main.nf.test.snap @@ -0,0 +1,430 @@ +{ + "txsscan_versions": { + "content": [ + { + "versions_macsydata": [ + [ + "MACSYFINDER_DOWNLOAD", + "msf_data", + "- MacSyLib 1.0.4 " + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_DOWNLOAD", + "macsyfinder", + "2.1.6" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2026-02-25T16:05:48.650908664" + }, + "txsscan_stub_versions": { + "content": [ + { + "versions_macsydata": [ + [ + "MACSYFINDER_DOWNLOAD", + "msf_data", + "- MacSyLib 1.0.4 " + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_DOWNLOAD", + "macsyfinder", + "2.1.6" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2026-02-25T16:06:15.475545893" + }, + "txsscan_stub_output": { + "content": [ + { + "models": [ + [ + [ + "definitions.txt:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ] + ], + "versions_macsydata": [ + [ + "MACSYFINDER_DOWNLOAD", + "msf_data", + "- MacSyLib 1.0.4 " + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_DOWNLOAD", + "macsyfinder", + "2.1.6" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2026-02-25T16:06:07.229053402" + }, + "txsscan_output": { + "content": [ + { + "models": [ + [ + [ + ".gitignore:md5,f02b850f071e04a0c1a9461e6f94bb3c", + "LICENSE:md5,1ddcbd7d0ae0da6f71e47c235f9a8f60", + "README.md:md5,9d9a08dc6d30c290dcd6fcf8aa1dc91b", + [ + [ + "Archaeal-T4P.xml:md5,ad6cca604cdd91f975c70b44bf1a660d" + ], + [ + [ + "Flagellum.xml:md5,5c1fc4238730682e48c2a0ecb3b1b168", + "MSH.xml:md5,b6d2ec91f9ba1d69a376acfafae51d90", + "T1SS.xml:md5,97322ac67ea368478b4b7ba3ccd05116", + "T2SS.xml:md5,0980e87186cedae11aea14511857b923", + "T3SS.xml:md5,5f6dbe79ce6162cc228daac0d1fdbbca", + "T4aP.xml:md5,33c4b073e20b9ffe162c867d1f3d639f", + "T4bP.xml:md5,cc0a56db070471899657bb640bcc028e", + "T5aSS.xml:md5,1f5e983b0529be81163085de484ab826", + "T5bSS.xml:md5,b412c8e9ddfac070a117b7146a980f28", + "T5cSS.xml:md5,ce39bbde8eaa484f937e9fca7d1765f0", + "T6SSi.xml:md5,a4b33f3067b73652b815fc4cb542d4de", + "T6SSii.xml:md5,a7dce1cfa43c3231225f3b50c8193d59", + "T6SSiii.xml:md5,855b049bb0eb14d5810e5bbfbf05dd42", + "T9SS.xml:md5,5caa00d050f3d98e966c8f31e347f545", + "Tad.xml:md5,285e2a8bb21efc4c0ac6e99b2bb50775", + "pT4SSi.xml:md5,27bbf29b127cce1d6bccd8c746509bbd", + "pT4SSt.xml:md5,db13e11e4e019c5025a413430df03ced" + ], + [ + "ComM.xml:md5,9ba66f09ea898091d583b82688c8b41a" + ] + ] + ], + "metadata.yml:md5,9db4d3947978ebf6c9d926abda328e8a", + [ + "Archaeal-T4P_arCOG00589.hmm:md5,e6221a1339d3ad622e213e647d969e22", + "Archaeal-T4P_arCOG01808.hmm:md5,1887eaffa2ab7fc2981cc17a55036cc0", + "Archaeal-T4P_arCOG01809_IM.hmm:md5,55fd0fb9cb2b2a060165bf9efe369836", + "Archaeal-T4P_arCOG01810.hmm:md5,1b34e42c20cfa22e160a3657b5c7eaa7", + "Archaeal-T4P_arCOG01811.hmm:md5,34acd0a4c3ecd0cd592ae3f974446d15", + "Archaeal-T4P_arCOG01812.hmm:md5,a79a898e18492a237d30df3c91c1305d", + "Archaeal-T4P_arCOG01814.hmm:md5,844bc1056c5cfe044fec5a3c529d73fb", + "Archaeal-T4P_arCOG01815.hmm:md5,9ea72f09575cd2111bbf10cb4db45ae8", + "Archaeal-T4P_arCOG01817_ATP.hmm:md5,ef048a46ba8b267f723c8a07e57c3c35", + "Archaeal-T4P_arCOG01818.hmm:md5,3864d63000e1cd9a75f7d5b3986bb278", + "Archaeal-T4P_arCOG01822.hmm:md5,d8fa290ae627c80874639f369c2d4ec2", + "Archaeal-T4P_arCOG01824.hmm:md5,d8b576591c5d9d68d99b464a05ee6a6d", + "Archaeal-T4P_arCOG01829_Pil.hmm:md5,3f01921a5889cdf59953b596a0b3da61", + "Archaeal-T4P_arCOG02298_PP.hmm:md5,65bc665af6150a7b5132d02ed1436243", + "Archaeal-T4P_arCOG02300.hmm:md5,9f3a3699628dc29bb3fb5fe3a1522d0c", + "Archaeal-T4P_arCOG02394.hmm:md5,c5387266cc464bb4aaa12d7883bf7868", + "Archaeal-T4P_arCOG02396.hmm:md5,0cda3c1d2350de65feeac5a85646e023", + "Archaeal-T4P_arCOG02416.hmm:md5,61ec89f390da199d254b6b9a3aa1f7ed", + "Archaeal-T4P_arCOG02419.hmm:md5,ea399a88e3e4e3da326b4e2a03e84290", + "Archaeal-T4P_arCOG02420.hmm:md5,28582a84fc97902dad3feec4ccd438fb", + "Archaeal-T4P_arCOG02421.hmm:md5,b7ee5ebb0db396166e1d10c35f0e48fc", + "Archaeal-T4P_arCOG02425.hmm:md5,7de434e9edcf5446b7e7612c75eaaa07", + "Archaeal-T4P_arCOG02900.hmm:md5,42d9851ca4106b406d75fcf02e467b71", + "Archaeal-T4P_arCOG02911.hmm:md5,5fcc56dc9cb804e40313b4c73472346f", + "Archaeal-T4P_arCOG02916.hmm:md5,35f15922c1e50e5e683afa3902df9ec4", + "Archaeal-T4P_arCOG02963.hmm:md5,19b0a158f540bc331fc6a061af1b30f3", + "Archaeal-T4P_arCOG02964.hmm:md5,0409fc8fa715d42677fe246e5515a991", + "Archaeal-T4P_arCOG02981.hmm:md5,9a86e0b37a2aa4c0ffd17261248c2d65", + "Archaeal-T4P_arCOG03360.hmm:md5,341a1f22b7ad12699c170f9db451d61e", + "Archaeal-T4P_arCOG03422.hmm:md5,dafa9e2679e36596ace6b52290370dec", + "Archaeal-T4P_arCOG03511.hmm:md5,8f37cd2e812b8c336949e4ec3724e33f", + "Archaeal-T4P_arCOG03821.hmm:md5,1795caf0305df369020efeff982d2d3c", + "Archaeal-T4P_arCOG03870.hmm:md5,8ea78938cc2ed3ceb30e0ba029616de6", + "Archaeal-T4P_arCOG03871.hmm:md5,4e2f52e9fef36a5e0dbd8a8dc351779f", + "Archaeal-T4P_arCOG03872.hmm:md5,163361951e529c47748d760e8799682a", + "Archaeal-T4P_arCOG03926.hmm:md5,defa2269f6a4d0dd0df5cfbed0a5a38c", + "Archaeal-T4P_arCOG03933.hmm:md5,9716bcda747c667760964e8121e905ea", + "Archaeal-T4P_arCOG04026.hmm:md5,99cc8ed11bff3549ae8b2f31fc3ea2aa", + "Archaeal-T4P_arCOG04148.hmm:md5,4b8bbf8fe97f6095675aa4cc2ff78c56", + "Archaeal-T4P_arCOG04652.hmm:md5,37ba154c8955b6c3bf39962cb7dbca1f", + "Archaeal-T4P_arCOG04673.hmm:md5,0b09eee65ebd3cf83d9667b6e4689f4d", + "Archaeal-T4P_arCOG04679.hmm:md5,56e605ea7bc547411d0d387963947c9c", + "Archaeal-T4P_arCOG04680.hmm:md5,87a8c7e0f3fc443c65295f3c06578585", + "Archaeal-T4P_arCOG05057.hmm:md5,ecae8dd052f19eb48daaec791ed8d291", + "Archaeal-T4P_arCOG05119.hmm:md5,f235af80ce455ce49b1586393ce89b65", + "Archaeal-T4P_arCOG05166.hmm:md5,807f5229de6fe8bbe37f861b7072475c", + "Archaeal-T4P_arCOG05458.hmm:md5,294f7004668a65b62f0b3f2f4d5fd1a8", + "Archaeal-T4P_arCOG05608.hmm:md5,c1f3154cacb0fdce937b74e9cfcc6695", + "Archaeal-T4P_arCOG05609.hmm:md5,d813780920a2cea45f2b80f6a010b7b2", + "Archaeal-T4P_arCOG05610.hmm:md5,10a26b86c07f7cb59d353a2cae9339f8", + "Archaeal-T4P_arCOG05611.hmm:md5,66c4e0b2ce5c39b10b2c2fee83419071", + "Archaeal-T4P_arCOG05612.hmm:md5,0ce174fc22411bccee74194d8c8158e2", + "Archaeal-T4P_arCOG05613.hmm:md5,eea97697835cfeeb3ae0cda6d0a6a619", + "Archaeal-T4P_arCOG05614.hmm:md5,bf2b7d4ffcb9e8b525bf46d4e1a768aa", + "Archaeal-T4P_arCOG05615.hmm:md5,ad7cf3da00860a7ca038231995c69679", + "Archaeal-T4P_arCOG05616.hmm:md5,e3a4a355d0e9b580d2d218efebd7b9d3", + "Archaeal-T4P_arCOG05617.hmm:md5,300a1a0760cc38b4d64a96dcab43043e", + "Archaeal-T4P_arCOG05618.hmm:md5,4ed90b41f75aa2ae6ef5ba494a5e27e0", + "Archaeal-T4P_arCOG05619.hmm:md5,d2096f4873c415e4340d760bf3dfea3f", + "Archaeal-T4P_arCOG05986.hmm:md5,ca4a30546c0bd9e1270b5b7eaca94604", + "Archaeal-T4P_arCOG05987.hmm:md5,87e67086ab42c1dc4588e98c1a3c7825", + "Archaeal-T4P_arCOG06117.hmm:md5,f8d6bde291e44ac1ec93f94c955aa7e5", + "Archaeal-T4P_arCOG06291.hmm:md5,8880ff8dd41ba45f33eaf7263ed053a2", + "Archaeal-T4P_arCOG06296.hmm:md5,9eb3468bd47dcff327b9ba27f07de429", + "Archaeal-T4P_arCOG06335.hmm:md5,c4696b54f46c5b499fa97f5ca3ae919d", + "Archaeal-T4P_arCOG06517.hmm:md5,ea0b87fab793ce5be9871dd6467ac0fc", + "Archaeal-T4P_arCOG06518.hmm:md5,a4a286efdc6edf09a157e498d6381851", + "Archaeal-T4P_arCOG07206.hmm:md5,c030c97984059b2d44f777deb508e2c9", + "Archaeal-T4P_arCOG07276.hmm:md5,e4fe3cf7b39602b66595728abec300db", + "Archaeal-T4P_arCOG07478.hmm:md5,ce78a209f00b2cc966f00ba696d5e28c", + "Archaeal-T4P_arCOG07564.hmm:md5,85dc5ccc21d66e77ee642a0e4f344493", + "Archaeal-T4P_arCOG07777.hmm:md5,c9344d8beeee7ab7416892c61d4c6d1d", + "Archaeal-T4P_arCOG08085.hmm:md5,e1c4419f59f8a099aa30fb96a94d0130", + "Archaeal-T4P_arCOG08521.hmm:md5,3faf389c93e43110637d997bd894b58a", + "Archaeal-T4P_arCOG08522.hmm:md5,afd65bedaf0e4b889516e32e8497815b", + "Archaeal-T4P_arCOG08524.hmm:md5,35f093887639f06d337b344cf35c59d7", + "Archaeal-T4P_arCOG08836.hmm:md5,30dea78f805a43bc2e18232553da7ce2", + "Archaeal-T4P_arCOG08837.hmm:md5,484c109895cac7102e43c3fac42641f6", + "Archaeal-T4P_arCOG09029.hmm:md5,0e00b2baafcc0046b04a882ec0c371d0", + "Archaeal-T4P_arCOG09150.hmm:md5,2fa892e2f99c0ee2e965d4f8018c913f", + "Archaeal-T4P_arCOG10216.hmm:md5,14f5c8de3be77e945481b32984467a4b", + "Archaeal-T4P_arCOG10426.hmm:md5,a405661bd7815cbf23cd66032b9989b0", + "Archaeal-T4P_arCOG11520.hmm:md5,8f243ddbfc7f5958a15148ab0b5b7ce8", + "Archaeal-T4P_arCOG11939.hmm:md5,2fecc83ab5e8c3e97d700e4bc7c7dfa2", + "ComM_comB.hmm:md5,8b92501c0f7ed5fb990fade13a8823c2", + "ComM_comC.hmm:md5,9aa05706bbd367850940e534173a37fa", + "ComM_comEA.hmm:md5,19012c06a1d8f4bc1333a75f9a555481", + "ComM_comEB.hmm:md5,6643aa98a3ff89787b7205bb8c72f5ec", + "ComM_comEC.hmm:md5,d910242f8548e5413482e8cb12ab2353", + "ComM_comFA.hmm:md5,1413f6d3e8d61949c5a6e719a3187f86", + "ComM_comFC.hmm:md5,ede545142361974e904c67cd7851f867", + "ComM_comGA.hmm:md5,57b7608ffc31538aadf4d7e38e2d801b", + "ComM_comGB.hmm:md5,990ff2a0d579eb3ca12161371219cc2e", + "ComM_comGC.hmm:md5,9c0a224fb1b30016a369e4766231f97a", + "ComM_comGD.hmm:md5,9e8ca24acfc45fb38f52405188716ca3", + "ComM_comGE.hmm:md5,cf645894f7586122048e1e91acdc0c9f", + "ComM_comGF.hmm:md5,ef23ca18cd337c6934ad9fbd3e7ef664", + "ComM_comGG.hmm:md5,a92af23ad80dc55701604702746d757e", + "ComM_comK.hmm:md5,d41c1f103903d917c38bf62575f37321", + "ComM_comX.hmm:md5,5ff478248f1c462df0f53afb3b1ed460", + "Flg_flgB.hmm:md5,5aa7a2bc3536d3e9241fc27aaf550a25", + "Flg_flgC.hmm:md5,9849a083d59c9ed1299af464f114a1f2", + "Flg_fliE.hmm:md5,8363d03b9e87f7362331f71a12e0cdcd", + "Flg_sctJ_FLG.hmm:md5,e5cf1834304d071d8eefd3f6b7fa9297", + "Flg_sctN_FLG.hmm:md5,df032e88f87249a53f94a86272d822a0", + "Flg_sctQ_FLG.hmm:md5,8aab0c513d2d13de3dd5f0eac9d9da01", + "Flg_sctR_FLG.hmm:md5,260f43f0a842dd0137072db2d698937e", + "Flg_sctS_FLG.hmm:md5,2feb54cdb0443943854c55794053e742", + "Flg_sctT_FLG.hmm:md5,8e334ba405269cd5ed78e707d9cc1e43", + "Flg_sctU_FLG.hmm:md5,80c842b9cc7f8212046453fc4373f72f", + "Flg_sctV_FLG.hmm:md5,1a1f61a9bc09de7ff8106c8787226ee9", + "MSH_mshA.hmm:md5,234f66cca18661d4f881f44213f01014", + "MSH_mshB.hmm:md5,9b6d06b1febdf9c82f897b9b692b8274", + "MSH_mshC.hmm:md5,6f817d79b85ebd8a9719f91cbc650b5b", + "MSH_mshD.hmm:md5,4be17b638bbbddd0f10a13d28c447047", + "MSH_mshE.hmm:md5,ead85cb4deda9ded58dcbb2a260ab2f8", + "MSH_mshF.hmm:md5,a783e47675166a12b9677374962bb952", + "MSH_mshG.hmm:md5,4c2e6f244433dfb699bd92659f48598e", + "MSH_mshI.hmm:md5,1e1051440d3cd36be3723b50e9b659b1", + "MSH_mshI2.hmm:md5,422f1e1fff633c1261aca4eaa9343e0e", + "MSH_mshJ.hmm:md5,ef6bf84ef2fa27a751f9956dc08ab436", + "MSH_mshK.hmm:md5,deb3d7bff859c357201307a50923f342", + "MSH_mshL.hmm:md5,80e117b99f52df133f9dc33e1406c8ff", + "MSH_mshM.hmm:md5,a1b97f6ef4106493d4bc265d5cf5ef1e", + "MSH_mshN.hmm:md5,d4fddc19bb723845d66d021ce92335d3", + "MSH_mshO.hmm:md5,b6e1e6e513d1c5e4b1845d933194cedf", + "MSH_mshP.hmm:md5,7ec9f085c9e3aabfde571a977be8bee6", + "MSH_mshQ.hmm:md5,f92dabbff573795519261486b02ffa59", + "T1SS_abc.hmm:md5,be6d61646a4dbf076ae96549ca5ca362", + "T1SS_mfp.hmm:md5,e664a68c1bdb0381af1bd0d662bf6472", + "T1SS_omf.hmm:md5,c3a7e838e179dc7fd264cff043bc5a57", + "T2SS_gspC.hmm:md5,6e2d20b8f4e7dc2392932b4bf36c3cf6", + "T2SS_gspD.hmm:md5,3aad9aff4d7dd5bf9b3ed173215b48d8", + "T2SS_gspE.hmm:md5,b08662a6b32bf3d5693cd12ecada35b3", + "T2SS_gspF.hmm:md5,035455dd0ef5063bf0db8c2177ca19c7", + "T2SS_gspG.hmm:md5,57facbb4315eac2ab5ac6838841c6ebb", + "T2SS_gspH.hmm:md5,9a7c81e7d29791eae55f7a90e7fe2ba1", + "T2SS_gspI.hmm:md5,c1d552b36d8239dbbbebc76fd346edc5", + "T2SS_gspJ.hmm:md5,feab35060381230f4a6a8ea0bcc13caa", + "T2SS_gspK.hmm:md5,2a2578541a05d86e1343916d299a43c7", + "T2SS_gspL.hmm:md5,f351e24c3791864d221517999334598b", + "T2SS_gspM.hmm:md5,a7698693084a20248497004a10b3f4c3", + "T2SS_gspN.hmm:md5,4d6e0f73b4709de32926cf4006ba7cfa", + "T2SS_gspO.hmm:md5,5d86b16dd5b22c97d52810aad769e114", + "T3SS_sctC.hmm:md5,36fd94d95defaab0cfd6cd28485bfd33", + "T3SS_sctJ.hmm:md5,e8d4c216fbcd89f39977aac74e966d1f", + "T3SS_sctN.hmm:md5,76ea99d61605f052f5265fe9f8c00545", + "T3SS_sctQ.hmm:md5,734d37048a146bca76f1c2d081e7a9cb", + "T3SS_sctR.hmm:md5,fa5bcd29b3a83e7177cae65dc6c876c5", + "T3SS_sctS.hmm:md5,c03126b7254bbccc5897987233fc4a17", + "T3SS_sctT.hmm:md5,2ad6e0ac6e4a1af7b4bbbd778c82bbe2", + "T3SS_sctU.hmm:md5,d9870cd5515c4770faeae1c2db819eb8", + "T3SS_sctV.hmm:md5,9d03145c08276acc056bcb1bb502c6e5", + "T4SS_I_traE.hmm:md5,fa98af76c96c395cbbb14c6a56452739", + "T4SS_I_traI.hmm:md5,d6ba64d752a94de59acf44ca0a47df21", + "T4SS_I_traK.hmm:md5,26f08b26990954487148abbb862b16c6", + "T4SS_I_traL.hmm:md5,3dc63894660376ad6906a687ac9b530a", + "T4SS_I_traM.hmm:md5,4dd2c66637f737a939a948b06616872d", + "T4SS_I_traN.hmm:md5,fa449cad88120c3e43d0d2264882f0de", + "T4SS_I_traO.hmm:md5,b92b167e67e72aca7a1e426f9b14d4fb", + "T4SS_I_traP.hmm:md5,de173f2bcf724a48fa5bc548e8f67ae6", + "T4SS_I_traQ.hmm:md5,8feb3c98664578a63966ddee53f3bc20", + "T4SS_I_traR.hmm:md5,046f9af46276841c5e545eff157bda26", + "T4SS_I_traT.hmm:md5,660c66898dc7892b812a1dbf5e347c79", + "T4SS_I_traW.hmm:md5,72357cf6058f5235752b6d2f3678d613", + "T4SS_I_traY.hmm:md5,47e0781dec973fa04972f4e70de2dfcc", + "T4SS_I_trbA.hmm:md5,70632beb0e4536ba49d48fb829960320", + "T4SS_I_trbB.hmm:md5,f23e32e52ab4e86482d8801a2a5f9979", + "T4SS_MOBB.hmm:md5,b1d08542cd64e9dfc42c627269e62414", + "T4SS_T_virB1.hmm:md5,727003af231e879ce6a6a164afe66bdc", + "T4SS_T_virB10.hmm:md5,b992445a04ac28f4fa579954718cca5d", + "T4SS_T_virB11.hmm:md5,4bbb861cf66744c93f1257956960e42e", + "T4SS_T_virB2.hmm:md5,16bf85bd0a36a8263f9544cfc2bf09e5", + "T4SS_T_virB3.hmm:md5,1c03c654dfb97cb708726070acc9909d", + "T4SS_T_virB5.hmm:md5,9bd0043b3fb0dcab747a4bc9b2e91a3b", + "T4SS_T_virB6.hmm:md5,86c3bb236aeecb99e3cd233794f6f972", + "T4SS_T_virB8.hmm:md5,d502c47eddc66358e3ed1d5ad3a0a387", + "T4SS_T_virB9.hmm:md5,a0e706d0fbe13d33fca88c8082d9b549", + "T4SS_t4cp1.hmm:md5,870ae6a8749a2823055c0e551569b0bd", + "T4SS_virb4.hmm:md5,0b3822c45e861e36927618a3aa6c2f4e", + "T4aP_fimT.hmm:md5,1fa15d1531d042ab317f5927f63f24f5", + "T4aP_pilA.hmm:md5,0e22cd7b1da86de112319c6f72c03d83", + "T4aP_pilB.hmm:md5,1c4c58b5a9f4d53fac15a43d03e29044", + "T4aP_pilC.hmm:md5,d35fa1c265f1eadaa1f033c94ff351da", + "T4aP_pilD.hmm:md5,9a8011aa130776af622662b73612467b", + "T4aP_pilE.hmm:md5,79883a66c8f8c88aa1128ecc08f80d1b", + "T4aP_pilM.hmm:md5,c19549cca95422ca74040a82bc96b89b", + "T4aP_pilN.hmm:md5,11781140ecb2943709ba953f8acfe54c", + "T4aP_pilO.hmm:md5,80b1fde75431b1b0b72a6b7436c412e0", + "T4aP_pilP.hmm:md5,fb3f76f18726ac0ba69a9949e695492e", + "T4aP_pilQ.hmm:md5,aa263122eabd2ffe437530eb62684c46", + "T4aP_pilT.hmm:md5,cadd25962bb5c678c7bcf1ec3597de99", + "T4aP_pilU.hmm:md5,e66eb6e98e7a2705f8a95d01c3128340", + "T4aP_pilV.hmm:md5,4bc0fe5a88b9da5732cbd2e429c723dc", + "T4aP_pilW.hmm:md5,e0fbed72496e70d603100f7815ad0853", + "T4aP_pilX.hmm:md5,4d21019e6be492fe178c5d257f5c19c4", + "T4aP_pilY.hmm:md5,e0b2af9e0525278bc23ca8b6aac6f6de", + "T4aP_pilZ.hmm:md5,fef28a92095f98e23fe2d32fdbff6fa6", + "T4bP_pilA.hmm:md5,7fbaefd656d4c17c6bbbf859d1ed0485", + "T4bP_pilB.hmm:md5,0a45c554f3f5f4f378bd1ed3db8de30b", + "T4bP_pilC.hmm:md5,7f81c91fcac9d6d1d7a22b2e83d529c3", + "T4bP_pilD.hmm:md5,7cf169b486c40ba038635e72ff66aa04", + "T4bP_pilE.hmm:md5,cfd8d38934c15de93239ae5fdf668981", + "T4bP_pilP.hmm:md5,d97ad453c3c75e542df84f593e004946", + "T4bP_pilQ.hmm:md5,3161a2be798775938d63de71ee18b4c9", + "T4bP_pilT.hmm:md5,62b26ad68f613f6c5f5fcfd048b0022e", + "T5aSS_PF03797.hmm:md5,5b65ddaf00446fbb4d09887ab51d65fe", + "T5bSS_translocator.hmm:md5,743fabe472783c60733ce76cb486dedf", + "T5cSS_PF03895.hmm:md5,7c74ab9eb7845601289c13a337d5064b", + "T6SSi_evpJ.hmm:md5,ab77ff7c7b239fde53ad9092ba55bcf1", + "T6SSi_tssA.hmm:md5,1968e88614d26b289f22fac0ebf14f85", + "T6SSi_tssB.hmm:md5,57f1493377aad3c2fab7a1d8f87e6e7d", + "T6SSi_tssC.hmm:md5,74ae5f91dbd0ff29ac41aa8bcbdd5566", + "T6SSi_tssD.hmm:md5,d32ed5829853bfa1b5a16b1bf0b08deb", + "T6SSi_tssE.hmm:md5,bd1ccebbc5c08f3a5bfed74843628aba", + "T6SSi_tssF.hmm:md5,ae2232aeb69de9ee890cda8acac8b5f7", + "T6SSi_tssG.hmm:md5,a8bdaea60981615ff324f0710f42c355", + "T6SSi_tssH.hmm:md5,bc1b541eb31196227cdf8f0acb791d30", + "T6SSi_tssI.hmm:md5,bcbfd6adcda293f4fd10b123853f595d", + "T6SSi_tssJ.hmm:md5,b87434ba9a8ca61a3a0fd63e410123b6", + "T6SSi_tssK.hmm:md5,abbf172c54bcd557f0a4012de6950624", + "T6SSi_tssL.hmm:md5,e3ba57b291a3a96cbbdb2bb8e933d61f", + "T6SSi_tssM.hmm:md5,ac1793f3ed2094dbc9e6337f81ef485c", + "T6SSii_dotU.hmm:md5,4f32cb790cbf2702779ff390edb857e7", + "T6SSii_iglA.hmm:md5,4ba18f6e682b5c7a81c9ee6e6b0e6078", + "T6SSii_iglB.hmm:md5,763938c047b68453c234a013983ad5c6", + "T6SSii_iglC.hmm:md5,5b2ddf3cad8e171568f7d53ac938c483", + "T6SSii_iglD.hmm:md5,ceae29b6309e5ae4c314928c009cd123", + "T6SSii_iglE.hmm:md5,64d8040396cb1e9c2fde03c5529a520e", + "T6SSii_iglF.hmm:md5,341cd5967a7bda64d8fed8f4a8fcf09b", + "T6SSii_iglG.hmm:md5,ead310a70d8484adf551357cd419400e", + "T6SSii_iglH.hmm:md5,952cbb744876794cfbec4a2d1f94c32a", + "T6SSii_iglI.hmm:md5,faccd9bda232fd817c42ac848edcecd1", + "T6SSii_iglJ.hmm:md5,dddc2765b278eff45bc9095bd7769438", + "T6SSii_pdpA.hmm:md5,ec737a606805a656b9839d6a2693bb73", + "T6SSii_pdpB.hmm:md5,4e1d2368cfe4ff768f0b56ae9cf43eb0", + "T6SSii_pdpC.hmm:md5,9fd492ecee23f7a840b785421448b715", + "T6SSii_pdpD.hmm:md5,e2ee5961ecf176fe6202e66e1d399606", + "T6SSii_pdpE.hmm:md5,6915c2b5f005fbfaa38f162cb60a7713", + "T6SSii_vgrG.hmm:md5,714ffbb6e3a5459d9fc30bf1b8b0d491", + "T6SSiii_tssB.hmm:md5,181c1a5f2cb8bfdce76332190bcce6ad", + "T6SSiii_tssC.hmm:md5,e058d8ee444b9ca8c28e7d714084c54f", + "T6SSiii_tssD.hmm:md5,341fe6012ec1519e9abf3394a37df412", + "T6SSiii_tssE.hmm:md5,5da80e2ebb4ecab60f08682e174f92bb", + "T6SSiii_tssF.hmm:md5,4abce21e4d354bcaa3d0c81fbc435a48", + "T6SSiii_tssG.hmm:md5,a5c7ec1d893f66722a1c8e1756e52386", + "T6SSiii_tssH.hmm:md5,66f917669a7f6bf36dbfd98299322a38", + "T6SSiii_tssI.hmm:md5,75082f0ddd150c4df002be4a2ccfceee", + "T6SSiii_tssK.hmm:md5,f1afb36df01a32211ce82b8f82436a63", + "T6SSiii_tssN.hmm:md5,ccb478dc01209a5ae9b2aab53771e7c6", + "T6SSiii_tssO.hmm:md5,fe4a276d51e83003cd67f1af1b9c80f1", + "T6SSiii_tssP.hmm:md5,7793249e8ce092288cab77033834a362", + "T6SSiii_tssQ.hmm:md5,43697e37654e54c295d02e2fe554517a", + "T6SSiii_tssR.hmm:md5,0b79e66ede2055c19310155d4ea2eb0b", + "T9SS_gldJ_TIGR03524.hmm:md5,7c0f248ccad726272eb8063f5c88c920", + "T9SS_gldK_TIGR03525.hmm:md5,73884141a4f363384061772a9579e370", + "T9SS_gldL_TIGR03513.hmm:md5,082fa1c4bd15dee98270fe9a40c684d8", + "T9SS_gldM_TIGR03517.hmm:md5,74807b9c92d7d3aace5e9b37c38c1c0f", + "T9SS_gldN_TIGR03523.hmm:md5,a466e23f98704e3be3bc9e92364d8fb5", + "T9SS_porQ.hmm:md5,9146b6171a06e64f63bfa12977a03a1f", + "T9SS_porU.hmm:md5,2d40b46266aba2984db3a37abfb21d84", + "T9SS_porV.hmm:md5,9b3328c3fc0180e948aadce5d2005e24", + "T9SS_sprA-2_PF12118.hmm:md5,2dc7be3c808b28c764ffca948466281a", + "T9SS_sprA-3_TIGR04189.hmm:md5,310b73e03fc3f90efc369889953e0b77", + "T9SS_sprA_PF14349.hmm:md5,463fbda35bedd16c1b521569e83eddeb", + "T9SS_sprE.hmm:md5,1ed35e9a9a54174f43c1830412739e70", + "T9SS_sprT.hmm:md5,8aa0dea6d516a303bc67eec41a2cf3aa", + "Tad_flp.hmm:md5,f86f5a88fa0781e9903fffdaadd55cad", + "Tad_rcpA.hmm:md5,012609ef0cf726dc2e19673a6739b205", + "Tad_rcpB.hmm:md5,bd79f30fa47bf311a58bb595895b8ab1", + "Tad_rcpC.hmm:md5,74327720121a869604f1fb58e872a561", + "Tad_tadA.hmm:md5,6f60054893457c74d8e2efcf42358246", + "Tad_tadB.hmm:md5,276367d84ac26cb39a7f632458fbdfcc", + "Tad_tadC.hmm:md5,6bfffba41be12fb3ee960a63cdcf8391", + "Tad_tadD.hmm:md5,454244d6c797c420f16ffcf484e12329", + "Tad_tadE.hmm:md5,147c17898ddfac363f95ccda8862a35e", + "Tad_tadF.hmm:md5,4d8aaaff3c4c251a69f83a0ec73b1073", + "Tad_tadG.hmm:md5,ee5e9b09db9bd8d366bdccd92d15cf24", + "Tad_tadV.hmm:md5,9435a6b57317c974e3c4371210fb2a9f", + "Tad_tadZ.hmm:md5,82a96b2f4eeb61be95b0982fe5a6690a" + ] + ] + ] + ], + "versions_macsydata": [ + [ + "MACSYFINDER_DOWNLOAD", + "msf_data", + "- MacSyLib 1.0.4 " + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_DOWNLOAD", + "macsyfinder", + "2.1.6" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2026-02-25T16:05:40.411111667" + } +} \ No newline at end of file diff --git a/modules/nf-core/macsyfinder/search/environment.yml b/modules/nf-core/macsyfinder/search/environment.yml new file mode 100644 index 00000000000..7feab3433e4 --- /dev/null +++ b/modules/nf-core/macsyfinder/search/environment.yml @@ -0,0 +1,7 @@ +--- +# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json +channels: + - conda-forge + - bioconda +dependencies: + - bioconda::macsyfinder=2.1.6 diff --git a/modules/nf-core/macsyfinder/search/main.nf b/modules/nf-core/macsyfinder/search/main.nf new file mode 100644 index 00000000000..87e45b11da6 --- /dev/null +++ b/modules/nf-core/macsyfinder/search/main.nf @@ -0,0 +1,58 @@ +process MACSYFINDER_SEARCH { + tag "$meta.id" + label 'process_medium' + + conda "${moduleDir}/environment.yml" + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://depot.galaxyproject.org/singularity/macsyfinder:2.1.6--pyhdfd78af_0' : + 'biocontainers/macsyfinder:2.1.6--pyhdfd78af_0' }" + + input: + tuple val(meta), path(proteins) + path models + val model_names + + output: + tuple val(meta), path("${prefix}/*") , emit: results + tuple val(meta), path("${prefix}/macsyfinder.out") , emit: stdout , optional: true + tuple val(meta), path("${prefix}/macsyfinder.err") , emit: stderr , optional: true + tuple val(meta), path("${prefix}/all_systems.tsv") , emit: summary , optional: true + tuple val(meta), path("${prefix}/all_best_solutions*") , emit: best_solutions, optional: true + tuple val("${task.process}"), val('macsyfinder'), eval('macsyfinder --version 2>&1 | sed "1!d;s/^.*MacSyFinder //;s/ .*$//"'), topic: versions, emit: versions_macsyfinder + tuple val("${task.process}"), val('hmmer'), eval('hmmsearch -h 2>&1 | sed "2!d;s/^# HMMER //;s/ .*$//"'), topic: versions, emit: versions_hmmer + + when: + task.ext.when == null || task.ext.when + + script: + def args = task.ext.args ?: '' + prefix = task.ext.prefix ?: "${meta.id}" + def model_arg = model_names ? "--models ${model_names}" : "" + """ + macsyfinder \\ + --sequence-db ${proteins} \\ + --models-dir ${models} \\ + ${model_arg} \\ + --out-dir ${prefix} \\ + --worker ${task.cpus} \\ + ${args} \\ + 2>| >( tee macsyfinder.err >&2 ) \\ + | tee macsyfinder.out + + mv macsyfinder.err ${prefix}/ + mv macsyfinder.out ${prefix}/ + + # Remove empty error files to avoid snapshot pollution + find ${prefix} -name "*.err" -type f -size 0 -delete + """ + + stub: + prefix = task.ext.prefix ?: "${meta.id}" + """ + mkdir -p ${prefix} + touch ${prefix}/macsyfinder.err + touch ${prefix}/macsyfinder.out + touch ${prefix}/all_systems.tsv + touch ${prefix}/all_best_solutions.txt + """ +} diff --git a/modules/nf-core/macsyfinder/search/meta.yml b/modules/nf-core/macsyfinder/search/meta.yml new file mode 100644 index 00000000000..7ab41332779 --- /dev/null +++ b/modules/nf-core/macsyfinder/search/meta.yml @@ -0,0 +1,139 @@ +name: "macsyfinder_search" +description: Search for macromolecular systems in protein datasets using MacSyFinder +keywords: + - genomics + - protein + - macromolecular systems + - hmmer + - search +tools: + - "macsyfinder": + description: "Detection of macromolecular systems in protein datasets using systems\ + \ modelling and similarity search" + homepage: "https://github.com/gem-pasteur/macsyfinder" + documentation: "https://macsyfinder.readthedocs.io" + tool_dev_url: "https://github.com/gem-pasteur/macsyfinder" + doi: "10.24072/pcjournal.250" + licence: + - "GPL v3" + identifier: biotools:macsyfinder +input: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. `[ id:'test' ]` + - proteins: + type: file + description: Protein sequence file in FASTA format + pattern: "*.{fasta,faa,fa}" + ontologies: + - edam: "http://edamontology.org/format_1929" + - models: + type: directory + description: Directory containing MacSyFinder model(s) + pattern: "*" + - model_names: + type: string + description: Space-separated list of model names to search for. If not provided, + all models in the directory will be used. +output: + results: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. `[ id:'test', db_type:'gembase' ]` + - ${prefix}/*: + type: directory + description: Directory containing all MacSyFinder results + pattern: "${prefix}/*" + stdout: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. `[ id:'test', db_type:'gembase' ]` + - ${prefix}/macsyfinder.out: + type: file + description: MacSyFinder standard output + pattern: "${prefix}/macsyfinder.out" + ontologies: [] + stderr: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. `[ id:'test', db_type:'gembase' ]` + - ${prefix}/macsyfinder.err: + type: file + description: MacSyFinder standard error + pattern: "${prefix}/macsyfinder.err" + ontologies: [] + summary: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. `[ id:'test', db_type:'gembase' ]` + - ${prefix}/all_systems.tsv: + type: file + description: Summary table of all detected systems + pattern: "${prefix}/all_systems.tsv" + ontologies: + - edam: "http://edamontology.org/format_3475" + best_solutions: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. `[ id:'test', db_type:'gembase' ]` + - ${prefix}/all_best_solutions*: + type: file + description: Best solution files for detected systems + pattern: "${prefix}/all_best_solutions*" + ontologies: [] + versions_macsyfinder: + - - ${task.process}: + type: string + description: The name of the process + - macsyfinder: + type: string + description: The name of the tool + - macsyfinder --version 2>&1 | sed "1!d;s/^.*MacSyFinder //;s/ .*$//": + type: eval + description: The expression to obtain the version of the tool + versions_hmmer: + - - ${task.process}: + type: string + description: The name of the process + - hmmer: + type: string + description: The name of the tool + - hmmsearch -h 2>&1 | sed "2!d;s/^# HMMER //;s/ .*$//": + type: eval + description: The expression to obtain the version of the tool +topics: + versions: + - - ${task.process}: + type: string + description: The name of the process + - macsyfinder: + type: string + description: The name of the tool + - macsyfinder --version 2>&1 | sed "1!d;s/^.*MacSyFinder //;s/ .*$//": + type: eval + description: The expression to obtain the version of the tool + - - ${task.process}: + type: string + description: The name of the process + - hmmer: + type: string + description: The name of the tool + - hmmsearch -h 2>&1 | sed "2!d;s/^# HMMER //;s/ .*$//": + type: eval + description: The expression to obtain the version of the tool +authors: + - "@brovolia" +maintainers: + - "@brovolia" diff --git a/modules/nf-core/macsyfinder/search/tests/main.nf.test b/modules/nf-core/macsyfinder/search/tests/main.nf.test new file mode 100644 index 00000000000..6722ddad78e --- /dev/null +++ b/modules/nf-core/macsyfinder/search/tests/main.nf.test @@ -0,0 +1,118 @@ +nextflow_process { + + name "Test Process MACSYFINDER_SEARCH" + script "../main.nf" + process "MACSYFINDER_SEARCH" + config "./nextflow.config" + tag "modules" + tag "modules_nfcore" + tag "macsyfinder" + tag "macsyfinder/search" + tag "macsyfinder/download" + tag "pigz" + tag "pigz/compress" + + setup { + run("MACSYFINDER_DOWNLOAD") { + script "../../download/main.nf" + process { + """ + input[0] = 'TXSScan' + """ + } + } + } + + test("macsyfinder_search - proteins - fasta") { + + when { + process { + """ + input[0] = [ + [ id:'test' ], + file(params.modules_testdata_base_path + 'genomics/prokaryotes/candidatus_portiera_aleyrodidarum/genome/proteome.fasta', checkIfExists: true) + ] + input[1] = MACSYFINDER_DOWNLOAD.out.models + input[2] = 'TXSScan' + """ + } + } + + then { + assertAll( + { assert process.success }, + { assert snapshot( + sanitizeOutput(process.out), + process.out.findAll { key, val -> key.startsWith("versions") } + ).match() } + ) + } + } + + test("macsyfinder_search - proteins - fasta.gz") { + + setup { + run("PIGZ_COMPRESS") { + script "../../../pigz/compress/main.nf" + process { + """ + input[0] = [ + [ id:'test' ], + file(params.modules_testdata_base_path + 'genomics/prokaryotes/candidatus_portiera_aleyrodidarum/genome/proteome.fasta', checkIfExists: true) + ] + """ + } + } + } + + when { + process { + """ + input[0] = PIGZ_COMPRESS.out.archive.map { meta, file -> + [[ id: 'test' ], file] + } + input[1] = MACSYFINDER_DOWNLOAD.out.models + input[2] = 'TXSScan' + """ + } + } + + then { + assertAll( + { assert process.success }, + { assert snapshot( + sanitizeOutput(process.out), + process.out.findAll { key, val -> key.startsWith("versions") } + ).match() } + ) + } + } + + test("macsyfinder_search - proteins - fasta - stub") { + + options "-stub" + + when { + process { + """ + input[0] = [ + [ id:'test' ], + file(params.modules_testdata_base_path + 'genomics/prokaryotes/candidatus_portiera_aleyrodidarum/genome/proteome.fasta', checkIfExists: true) + ] + input[1] = MACSYFINDER_DOWNLOAD.out.models + input[2] = 'TXSScan' + """ + } + } + + then { + assertAll( + { assert process.success }, + { assert snapshot( + sanitizeOutput(process.out), + process.out.findAll { key, val -> key.startsWith("versions") } + ).match() } + ) + } + } +} diff --git a/modules/nf-core/macsyfinder/search/tests/main.nf.test.snap b/modules/nf-core/macsyfinder/search/tests/main.nf.test.snap new file mode 100644 index 00000000000..f8d25c11116 --- /dev/null +++ b/modules/nf-core/macsyfinder/search/tests/main.nf.test.snap @@ -0,0 +1,1368 @@ +{ + "macsyfinder_search - proteins - fasta": { + "content": [ + { + "best_solutions": [ + + ], + "results": [ + [ + { + "id": "test" + }, + [ + "all_systems.tsv:md5,dd6fd88699412463a057a1ef98d84168", + "all_systems.txt:md5,e59496105ffc6e6d03f91ded719ef3cb", + [ + "Archaeal-T4P_arCOG00589.res_hmm_extract:md5,3cc52050aef3fb701ac637e625d31260", + "Archaeal-T4P_arCOG00589.search_hmm.out:md5,b0c8c5eab51ce9af4047297a57ffb0a5", + "Archaeal-T4P_arCOG01808.res_hmm_extract:md5,8fb013fb86bfb7b9fb65de8f65e00bab", + "Archaeal-T4P_arCOG01808.search_hmm.out:md5,c4e00693fefcaa3f4866d161a7a46666", + "Archaeal-T4P_arCOG01809_IM.res_hmm_extract:md5,5df6f53e1b7b2a1f9142dff826e7028c", + "Archaeal-T4P_arCOG01809_IM.search_hmm.out:md5,d380ad9fe4703845cead9348c1ee2686", + "Archaeal-T4P_arCOG01810.res_hmm_extract:md5,61f59f82a8b4befd34c675f74dd177a0", + "Archaeal-T4P_arCOG01810.search_hmm.out:md5,354d6ce416ffaf94f380b832d361cc48", + "Archaeal-T4P_arCOG01811.res_hmm_extract:md5,db968bb07bc617ece38423a5708b947c", + "Archaeal-T4P_arCOG01811.search_hmm.out:md5,a924ff814d3a8221f32175f7848353b8", + "Archaeal-T4P_arCOG01812.res_hmm_extract:md5,c7e9e51e9537d49409c850b3c0093942", + "Archaeal-T4P_arCOG01812.search_hmm.out:md5,e1bc011c42a7cfb0587b19a2437cec0b", + "Archaeal-T4P_arCOG01814.res_hmm_extract:md5,d17cf15299cc9169ef081029b1401bcd", + "Archaeal-T4P_arCOG01814.search_hmm.out:md5,44f25ff4e34d35bf9c9164cd2863ce49", + "Archaeal-T4P_arCOG01815.res_hmm_extract:md5,b8354bf8c7bf8260b96db07c0fd4d00a", + "Archaeal-T4P_arCOG01815.search_hmm.out:md5,cf42eb32bc00305b2e5af5594e0ada32", + "Archaeal-T4P_arCOG01817_ATP.res_hmm_extract:md5,9eaa0c8638017181e4b6837419cb4e14", + "Archaeal-T4P_arCOG01817_ATP.search_hmm.out:md5,b18780b270069430c4b9828fcd50a75e", + "Archaeal-T4P_arCOG01818.res_hmm_extract:md5,eb7a50653be2897f6b688f270dcbee63", + "Archaeal-T4P_arCOG01818.search_hmm.out:md5,8b9ba4867a5a2709bb78d3941ff868e9", + "Archaeal-T4P_arCOG01822.res_hmm_extract:md5,ef8cb091a566b6f588f762bc74b81d8c", + "Archaeal-T4P_arCOG01822.search_hmm.out:md5,fef515f37f5265811eb92c4ea69e6583", + "Archaeal-T4P_arCOG01824.res_hmm_extract:md5,1d54470884b0afd8eb6307521cbc8d0e", + "Archaeal-T4P_arCOG01824.search_hmm.out:md5,09499888512bc762eb0e562c6cf9ce9b", + "Archaeal-T4P_arCOG01829_Pil.res_hmm_extract:md5,740a7618369733f9be70714bd34c4c9a", + "Archaeal-T4P_arCOG01829_Pil.search_hmm.out:md5,ce99176dbd6f36c811e01b9a98370aa6", + "Archaeal-T4P_arCOG02298_PP.res_hmm_extract:md5,86e1d6a8aa951b9d20f9d6f485a8122b", + "Archaeal-T4P_arCOG02298_PP.search_hmm.out:md5,dd84b6852dcb28a681719af730a02fc8", + "Archaeal-T4P_arCOG02300.res_hmm_extract:md5,eeda2d2f138017f9c852f66d0a596128", + "Archaeal-T4P_arCOG02300.search_hmm.out:md5,74c82bcca6e1156ced493d36226c633e", + "Archaeal-T4P_arCOG02394.res_hmm_extract:md5,bdaffbaee5dee88714dd791ed13877d4", + "Archaeal-T4P_arCOG02394.search_hmm.out:md5,68095380370867ed4f4c084b08f7a938", + "Archaeal-T4P_arCOG02396.res_hmm_extract:md5,544b39dc138cad12bed956295a6e1547", + "Archaeal-T4P_arCOG02396.search_hmm.out:md5,d08dc112f4af2dde551e9f010fa217fd", + "Archaeal-T4P_arCOG02416.res_hmm_extract:md5,c17dce95f7c97c6f2a190a7873477b88", + "Archaeal-T4P_arCOG02416.search_hmm.out:md5,4cc2b03ee95451fe439606c576de71d2", + "Archaeal-T4P_arCOG02419.res_hmm_extract:md5,e7c999de82e1b3ff321dc06dc10b51c7", + "Archaeal-T4P_arCOG02419.search_hmm.out:md5,89e1d80602b2a2a7519f8bdf0286fa40", + "Archaeal-T4P_arCOG02420.res_hmm_extract:md5,93196dadbfdead5d69a990586fa92e5d", + "Archaeal-T4P_arCOG02420.search_hmm.out:md5,0f4911c2cb6e70ffb2a421f45617aaaf", + "Archaeal-T4P_arCOG02421.res_hmm_extract:md5,9ec117e6b0633c3ffd1fa1b224e7f07d", + "Archaeal-T4P_arCOG02421.search_hmm.out:md5,c291715365db65de4fd8fda216a5364b", + "Archaeal-T4P_arCOG02425.res_hmm_extract:md5,227ec3ce5d8ffc3d37e10ef6c8513245", + "Archaeal-T4P_arCOG02425.search_hmm.out:md5,037a350f6458ca1b0cf3eeb5ef05911f", + "Archaeal-T4P_arCOG02900.res_hmm_extract:md5,08edbc51f9b250e5b365a6cf01f1984c", + "Archaeal-T4P_arCOG02900.search_hmm.out:md5,adcd182bacffedf7485db02c95ea7fd0", + "Archaeal-T4P_arCOG02911.res_hmm_extract:md5,ed97e3efbaad7ae3c5e09c0a678b8468", + "Archaeal-T4P_arCOG02911.search_hmm.out:md5,2c185486b498b46594466a4a0e13082d", + "Archaeal-T4P_arCOG02916.res_hmm_extract:md5,ab5c67a81a0bb35888aabdd33247bfc6", + "Archaeal-T4P_arCOG02916.search_hmm.out:md5,a577156d834240681fc163d43ab813d7", + "Archaeal-T4P_arCOG02963.res_hmm_extract:md5,28dcf6a5a2a608781e3c4d893b617112", + "Archaeal-T4P_arCOG02963.search_hmm.out:md5,7dfee650e07173926acc5025f533460d", + "Archaeal-T4P_arCOG02964.res_hmm_extract:md5,6653d65b493e810ecb3c8b72bcf18552", + "Archaeal-T4P_arCOG02964.search_hmm.out:md5,c66eb57be3b60d04092757f42b9ebbc1", + "Archaeal-T4P_arCOG02981.res_hmm_extract:md5,bc84d37cb142c05b6e61c4d4f53e4c2d", + "Archaeal-T4P_arCOG02981.search_hmm.out:md5,5f2ef6c7e9e68de5143fb19bc832f5b3", + "Archaeal-T4P_arCOG03360.res_hmm_extract:md5,2f23ebb82e162c590a17d2478d5438dc", + "Archaeal-T4P_arCOG03360.search_hmm.out:md5,48c68f1cda8db3f7f5776afc0b9fb28d", + "Archaeal-T4P_arCOG03422.res_hmm_extract:md5,4f8ee92a6bc226c89c9ad2708296c628", + "Archaeal-T4P_arCOG03422.search_hmm.out:md5,8e2df5ae3a77594ead82b3be7f5d7a6d", + "Archaeal-T4P_arCOG03511.res_hmm_extract:md5,295258359d3075ca9b75b2ca471bae64", + "Archaeal-T4P_arCOG03511.search_hmm.out:md5,5d1d2dd60b51e50a997c7d1a3821c28c", + "Archaeal-T4P_arCOG03821.res_hmm_extract:md5,92b55aaab7b1218a5ae4338aca659d93", + "Archaeal-T4P_arCOG03821.search_hmm.out:md5,bee8b0ff69cfadf1d7af8491d7380236", + "Archaeal-T4P_arCOG03870.res_hmm_extract:md5,f62feeb8022e20684dd22637955ec4a9", + "Archaeal-T4P_arCOG03870.search_hmm.out:md5,33a8d612fc6c87df2ae90bb9fcd5a6a5", + "Archaeal-T4P_arCOG03871.res_hmm_extract:md5,fd1500962028ce4c2570155415963c48", + "Archaeal-T4P_arCOG03871.search_hmm.out:md5,b16ef06156913c192030d61048944c64", + "Archaeal-T4P_arCOG03872.res_hmm_extract:md5,434f3120597bccf4cb54814cf619a034", + "Archaeal-T4P_arCOG03872.search_hmm.out:md5,54421691beafc50970f5a24b52193a75", + "Archaeal-T4P_arCOG03926.res_hmm_extract:md5,943b157723d68e103667508299dbfae8", + "Archaeal-T4P_arCOG03926.search_hmm.out:md5,02da78a157f424b3ecf806d38f3d812f", + "Archaeal-T4P_arCOG03933.res_hmm_extract:md5,fd13c5b3658c9833f8a23970ff87c627", + "Archaeal-T4P_arCOG03933.search_hmm.out:md5,bc82c66f02e1ff84d401162118d09e79", + "Archaeal-T4P_arCOG04026.res_hmm_extract:md5,4469e435063eaa5274ec5a4b2d6c60f8", + "Archaeal-T4P_arCOG04026.search_hmm.out:md5,20f9990cace8a0126b2744ff3c4719ed", + "Archaeal-T4P_arCOG04148.res_hmm_extract:md5,53b6c2e44deafb49e9b40e20516b3e79", + "Archaeal-T4P_arCOG04148.search_hmm.out:md5,0a0c81794a3995b66a7127625e2c580f", + "Archaeal-T4P_arCOG04652.res_hmm_extract:md5,50a6edfe98621c234b89ff3112c92e9e", + "Archaeal-T4P_arCOG04652.search_hmm.out:md5,c0a5c6b1d17f377cad1a887c7d44ad9e", + "Archaeal-T4P_arCOG04673.res_hmm_extract:md5,f5d6a5164d858d6cc933a15e425a1431", + "Archaeal-T4P_arCOG04673.search_hmm.out:md5,c7c64e81f81ebd4669ff0b0b76e8cb43", + "Archaeal-T4P_arCOG04679.res_hmm_extract:md5,633229b3161175d3b971c12a05a2f457", + "Archaeal-T4P_arCOG04679.search_hmm.out:md5,38aca310812eab402f07c57f68077fd1", + "Archaeal-T4P_arCOG04680.res_hmm_extract:md5,4dd4ceb67b3181932646ae745854cb04", + "Archaeal-T4P_arCOG04680.search_hmm.out:md5,52242214e8bb9e22a5c0751851821eb7", + "Archaeal-T4P_arCOG05057.res_hmm_extract:md5,ac5c27f7948bac1de95f9a5de22908b3", + "Archaeal-T4P_arCOG05057.search_hmm.out:md5,16dda0318f5248d18e0ca7435bbc6524", + "Archaeal-T4P_arCOG05119.res_hmm_extract:md5,bc16f951bcdb061bfd35e1c755c7c56f", + "Archaeal-T4P_arCOG05119.search_hmm.out:md5,239b61f6e5253c3221f125fec93c7c5d", + "Archaeal-T4P_arCOG05166.res_hmm_extract:md5,7c6ecefa4dc554b3ebcaa538f2f37873", + "Archaeal-T4P_arCOG05166.search_hmm.out:md5,ee1e3d21c8a4fd44da0dafea7c5913eb", + "Archaeal-T4P_arCOG05458.res_hmm_extract:md5,ac228e4689fadbb4abdea23a170076c8", + "Archaeal-T4P_arCOG05458.search_hmm.out:md5,c15ba9c7a79740a334680f17eb0d72d9", + "Archaeal-T4P_arCOG05608.res_hmm_extract:md5,ec5ba5828e0fea522bcb4b6808793445", + "Archaeal-T4P_arCOG05608.search_hmm.out:md5,b8e789b5fee100e441b1e7035bd1b21c", + "Archaeal-T4P_arCOG05609.res_hmm_extract:md5,247de3b9cab239639f09da722e30371c", + "Archaeal-T4P_arCOG05609.search_hmm.out:md5,fd77d67633bcd327acb71e97c5156c11", + "Archaeal-T4P_arCOG05610.res_hmm_extract:md5,2279e6d0685d367cc5ee5a2fb8513632", + "Archaeal-T4P_arCOG05610.search_hmm.out:md5,2ae5023359edb9d495b8d4248c6494ef", + "Archaeal-T4P_arCOG05611.res_hmm_extract:md5,a7b70b3e7827a8837212abfe57692ee4", + "Archaeal-T4P_arCOG05611.search_hmm.out:md5,0c148085d06e8e561667b5f27ed14b6e", + "Archaeal-T4P_arCOG05612.res_hmm_extract:md5,bdb3b9144d143800c86ea13c89fd45c6", + "Archaeal-T4P_arCOG05612.search_hmm.out:md5,c8e2920752f0db08d667bae7d746de6b", + "Archaeal-T4P_arCOG05613.res_hmm_extract:md5,3a594b7c5ea9fe91e861a33dd003b2e4", + "Archaeal-T4P_arCOG05613.search_hmm.out:md5,0a412d0323643600f232f22440a536ec", + "Archaeal-T4P_arCOG05614.res_hmm_extract:md5,040cc39072d73002adb559f2622e0384", + "Archaeal-T4P_arCOG05614.search_hmm.out:md5,fc13cdee57390e6d791c68211a2a0afa", + "Archaeal-T4P_arCOG05615.res_hmm_extract:md5,dd7d2e78cdf3540e1865eaf6f47fad68", + "Archaeal-T4P_arCOG05615.search_hmm.out:md5,556824efd3c7d67c3882ed81e8cae372", + "Archaeal-T4P_arCOG05616.res_hmm_extract:md5,8db63ae2b55507a2f85fd4e309761467", + "Archaeal-T4P_arCOG05616.search_hmm.out:md5,02785d01e6dd3cfacd73537f2c52a2e9", + "Archaeal-T4P_arCOG05617.res_hmm_extract:md5,25997523be690c6e31aa89e7f89ebb1f", + "Archaeal-T4P_arCOG05617.search_hmm.out:md5,f396fa89d5d3ce97827f937054b5a272", + "Archaeal-T4P_arCOG05618.res_hmm_extract:md5,08a01b5c42f0076ed3f2ccc1e811031c", + "Archaeal-T4P_arCOG05618.search_hmm.out:md5,bf285ca478166ef2bb8ad93257588309", + "Archaeal-T4P_arCOG05619.res_hmm_extract:md5,3a07b6ef56060a657494f9684f4779e7", + "Archaeal-T4P_arCOG05619.search_hmm.out:md5,e918108fc9bc23f0f7a1d0289a50d422", + "Archaeal-T4P_arCOG05986.res_hmm_extract:md5,b0f81cba7aaa4c89590095a5a6b5a185", + "Archaeal-T4P_arCOG05986.search_hmm.out:md5,63c8d04eaa0da927a65e3f95fa0770c2", + "Archaeal-T4P_arCOG05987.res_hmm_extract:md5,78b3165b6cad3d403b2f42ddb1e6c1c7", + "Archaeal-T4P_arCOG05987.search_hmm.out:md5,8b7fe8947a0650a664e4e501888f4934", + "Archaeal-T4P_arCOG06117.res_hmm_extract:md5,281562a4fd26dd78b7b7a3a5f178ae78", + "Archaeal-T4P_arCOG06117.search_hmm.out:md5,b9ce7d02643e584e0ca2fd5a26b8722d", + "Archaeal-T4P_arCOG06291.res_hmm_extract:md5,bdc27e630d41387cbdd09f3ef1e1dbb1", + "Archaeal-T4P_arCOG06291.search_hmm.out:md5,280f69577054af5d5696e6d9ec46b02a", + "Archaeal-T4P_arCOG06296.res_hmm_extract:md5,9a99fd8496cb49a8c9ab4ef4da77ab7e", + "Archaeal-T4P_arCOG06296.search_hmm.out:md5,8e34901ede7d81f08c0e75e37f456155", + "Archaeal-T4P_arCOG06335.res_hmm_extract:md5,744cc128ee3410cf6bc245e9f95c04ce", + "Archaeal-T4P_arCOG06335.search_hmm.out:md5,8fdd3f4dd6466d6f26e497536a178034", + "Archaeal-T4P_arCOG06517.res_hmm_extract:md5,e96023b1e1486d9230bb149dec082252", + "Archaeal-T4P_arCOG06517.search_hmm.out:md5,2210de61f1c529ba24524847b9551ef1", + "Archaeal-T4P_arCOG06518.res_hmm_extract:md5,52a7cc1da7864c1f42a2e2e33047bca3", + "Archaeal-T4P_arCOG06518.search_hmm.out:md5,627c74b0a9b888899a050ee02c0938ef", + "Archaeal-T4P_arCOG07206.res_hmm_extract:md5,8ec2e58301d9c85ae9f311a0380d9182", + "Archaeal-T4P_arCOG07206.search_hmm.out:md5,64fa05307789f71bfae3cd8bc900bc07", + "Archaeal-T4P_arCOG07276.res_hmm_extract:md5,df576553c9c5b5d5ae6a7622d3486d2d", + "Archaeal-T4P_arCOG07276.search_hmm.out:md5,805f6a2fab499e548d40aa7bce967810", + "Archaeal-T4P_arCOG07478.res_hmm_extract:md5,d1f673491589df75ead4e44ac37b51df", + "Archaeal-T4P_arCOG07478.search_hmm.out:md5,e8e04202c2ac282052488ecdbbf4ce81", + "Archaeal-T4P_arCOG07564.res_hmm_extract:md5,dd9c0fcfb4e80877f1e968e2bdf701f8", + "Archaeal-T4P_arCOG07564.search_hmm.out:md5,b7d99749ef951a6e981d57a48c3d67b5", + "Archaeal-T4P_arCOG07777.res_hmm_extract:md5,27e590f99a51fab838c3a11ed6389ffa", + "Archaeal-T4P_arCOG07777.search_hmm.out:md5,2840381e4b7adabf6c1db6cc2256cab8", + "Archaeal-T4P_arCOG08085.res_hmm_extract:md5,ec942b8a8f2a2322431f8b6662d4c9ba", + "Archaeal-T4P_arCOG08085.search_hmm.out:md5,79831e6718e26ed920ee0c4abce34c2b", + "Archaeal-T4P_arCOG08521.res_hmm_extract:md5,67a56c65541ff268b6f6aa8082982899", + "Archaeal-T4P_arCOG08521.search_hmm.out:md5,955508c2034fc5c9057395d365711dff", + "Archaeal-T4P_arCOG08522.res_hmm_extract:md5,1259b31c99de6253b27c8bb8835d4ac9", + "Archaeal-T4P_arCOG08522.search_hmm.out:md5,b5d8e1803ec4eade1221d95ea7bb87fa", + "Archaeal-T4P_arCOG08524.res_hmm_extract:md5,064dee65941e646bc18088f208b9a938", + "Archaeal-T4P_arCOG08524.search_hmm.out:md5,6f9099b77b951d57bc2fbb42be30f31d", + "Archaeal-T4P_arCOG08836.res_hmm_extract:md5,c183a1f068447c82b41f221922cf188d", + "Archaeal-T4P_arCOG08836.search_hmm.out:md5,4716fbcbe0ebcc55889baba436908cab", + "Archaeal-T4P_arCOG08837.res_hmm_extract:md5,d8984aa27f196921bd9a4bf334cdc964", + "Archaeal-T4P_arCOG08837.search_hmm.out:md5,91d17aff7ef569f03856d8b394db05e5", + "Archaeal-T4P_arCOG09029.res_hmm_extract:md5,a878642c7a2a40402eed735da9b854d4", + "Archaeal-T4P_arCOG09029.search_hmm.out:md5,d4a490dbe34d5b35592996bb20b7e793", + "Archaeal-T4P_arCOG09150.res_hmm_extract:md5,f127e4eb4029138a7f093ed6de4fa379", + "Archaeal-T4P_arCOG09150.search_hmm.out:md5,0cb815349fc8098a855add11b3f3c6fa", + "Archaeal-T4P_arCOG10216.res_hmm_extract:md5,481fde71cb49ef64748538b3cdef889d", + "Archaeal-T4P_arCOG10216.search_hmm.out:md5,17c250891a839c3a5c51fe24a2033a9c", + "Archaeal-T4P_arCOG10426.res_hmm_extract:md5,fd949a0037d8f78e5cfd2f579722e2f0", + "Archaeal-T4P_arCOG10426.search_hmm.out:md5,55433096b09670767cdfccd5c3c80a79", + "Archaeal-T4P_arCOG11520.res_hmm_extract:md5,fca3fd0e65363c425f3d76b1995c873f", + "Archaeal-T4P_arCOG11520.search_hmm.out:md5,ca579352657635d871029c335281d5ac", + "Archaeal-T4P_arCOG11939.res_hmm_extract:md5,265b00ef3f5dfb0378f1e6fcb4a8cd7a", + "Archaeal-T4P_arCOG11939.search_hmm.out:md5,bd34d38c97be4fc9b4e7f87442dac0ee", + "ComM_comB.res_hmm_extract:md5,e2bce475b5705dd053f6f341ee321663", + "ComM_comB.search_hmm.out:md5,aad6e4929f7e0f06d275ff590465d20b", + "ComM_comC.res_hmm_extract:md5,ce819a57ed5024185ffeb494dbd4b83f", + "ComM_comC.search_hmm.out:md5,0a599ed0ab8d58bafa4ace477478e91d", + "ComM_comEA.res_hmm_extract:md5,a7f6c65357e7ae503ae78524a9c1bb6a", + "ComM_comEA.search_hmm.out:md5,09b59c1de92148b8bd43e59272d40012", + "ComM_comEB.res_hmm_extract:md5,75f93312573cd9fd66ad24b2d946f87f", + "ComM_comEB.search_hmm.out:md5,7a658a35ec50d8383345ce2cdcdef319", + "ComM_comEC.res_hmm_extract:md5,e3375d56cd4ebf816ea0a2008e18610e", + "ComM_comEC.search_hmm.out:md5,4a6aca577f30c698b81fb8db982bbf5b", + "ComM_comFA.res_hmm_extract:md5,052ddff7dbbfab3666918456742c81be", + "ComM_comFA.search_hmm.out:md5,c7ac83e5b60fedb2aaeba55e9f7d4c97", + "ComM_comFC.res_hmm_extract:md5,6d39c0202f3ebe3d3cbfbeebde290306", + "ComM_comFC.search_hmm.out:md5,7760bfafd52dd58350b04e08e01c7a90", + "ComM_comGA.res_hmm_extract:md5,c649834d69e0ed7e8bc55a6341a86713", + "ComM_comGA.search_hmm.out:md5,a7f9e96ec675b15ceda48d1569cd62fa", + "ComM_comGB.res_hmm_extract:md5,7a790ba55ee4c21c6d21adc6448e4d46", + "ComM_comGB.search_hmm.out:md5,5b14b7001e8af38a9d0b611d60cbc602", + "ComM_comGC.res_hmm_extract:md5,5beb73d3e94dbf45c3b784594203df3a", + "ComM_comGC.search_hmm.out:md5,9ffc76a0ca557d492e2766a941b153b5", + "ComM_comGD.res_hmm_extract:md5,ea3bdf2b4c2d4cd2cbe100497c0e27ff", + "ComM_comGD.search_hmm.out:md5,c16ff2f064fa9fc693d8239df0917c7e", + "ComM_comGE.res_hmm_extract:md5,7639e407e7774bdb5d29ec3ab5f6ad34", + "ComM_comGE.search_hmm.out:md5,8e7e99bcb2b572a78d0cb2a2ac0523e4", + "ComM_comGF.res_hmm_extract:md5,35c1fbca80fb126522e59eb4c8e9c6d0", + "ComM_comGF.search_hmm.out:md5,f4def37c3ec414a6063b8edcd30f3c30", + "ComM_comGG.res_hmm_extract:md5,4f1d910de2c899b7a81f396f3d9108f2", + "ComM_comGG.search_hmm.out:md5,098d8e95d7f4a004bdae0b2270eaeb02", + "ComM_comK.res_hmm_extract:md5,f637d13404abc7dd0ad085c46e79363f", + "ComM_comK.search_hmm.out:md5,be25063c725be09a43b352feccf98f75", + "ComM_comX.res_hmm_extract:md5,c389ef37194d6c8b0fc0efffa0d7a27e", + "ComM_comX.search_hmm.out:md5,888f1104274af018247073aac3e25888", + "Flg_flgB.res_hmm_extract:md5,237803b2df7c1bd737c2eca35a1ed26e", + "Flg_flgB.search_hmm.out:md5,5d4d032ba46ba9d0e50fa845172c6faf", + "Flg_flgC.res_hmm_extract:md5,a2735fbc5628b146d83c70462bf89c3f", + "Flg_flgC.search_hmm.out:md5,fe29051d10d18136e3ddcb8befd434b7", + "Flg_fliE.res_hmm_extract:md5,d3dd423658c0934808818b2dad2ea1ac", + "Flg_fliE.search_hmm.out:md5,d72786b9b7ef68a734a32e79cedf5b2f", + "Flg_sctJ_FLG.res_hmm_extract:md5,e3f43eae0c76e27c51c08e7dcab7818a", + "Flg_sctJ_FLG.search_hmm.out:md5,dd67e4508ac1c50128f5b0b2a8e57d31", + "Flg_sctN_FLG.res_hmm_extract:md5,5bd7fcf7dd66ff5d90663efa677fe759", + "Flg_sctN_FLG.search_hmm.out:md5,afe55e33c4fbb8db721e4851b2fe90a7", + "Flg_sctQ_FLG.res_hmm_extract:md5,a6b744bf761acdddcbd2e5cbd006b9bd", + "Flg_sctQ_FLG.search_hmm.out:md5,481065fc6a0235f0eb22c9331a9fc802", + "Flg_sctR_FLG.res_hmm_extract:md5,9187c28a41535b2772f83a4ea8ec7bea", + "Flg_sctR_FLG.search_hmm.out:md5,306dd8aee25f314746704dd0f5fc8de0", + "Flg_sctS_FLG.res_hmm_extract:md5,3b2271df2281ccd0edd6cd89a3be12e7", + "Flg_sctS_FLG.search_hmm.out:md5,616c739847cb68e595dc203fd1503630", + "Flg_sctT_FLG.res_hmm_extract:md5,ef7ea1adad995e0967f8356c5738328b", + "Flg_sctT_FLG.search_hmm.out:md5,afdacecb99cd4d6a9e3d5e5129f3b038", + "Flg_sctU_FLG.res_hmm_extract:md5,6f07780a09ab533ca7d3554d8bd1e29d", + "Flg_sctU_FLG.search_hmm.out:md5,95aa68c495695911170f283a8f7e71bb", + "Flg_sctV_FLG.res_hmm_extract:md5,ed9280b8dddf5685768bd5b1e2c188e7", + "Flg_sctV_FLG.search_hmm.out:md5,dbbbe82b1dfa53aebcabce1a49d474dc", + "MSH_mshA.res_hmm_extract:md5,8cdf60057c01bda7a23a38a94504e957", + "MSH_mshA.search_hmm.out:md5,8a1c800212ab6611af965b4090fdbcaa", + "MSH_mshB.res_hmm_extract:md5,c51867d1d9aaf4e4d1f874deb46b311f", + "MSH_mshB.search_hmm.out:md5,a2a1f0e77361a5240fc1be0425657f7b", + "MSH_mshC.res_hmm_extract:md5,2c04e807f027b3c9ca316e8b4fbf6df6", + "MSH_mshC.search_hmm.out:md5,868c311f914e1bc00ee8a620bdebfec4", + "MSH_mshD.res_hmm_extract:md5,25c215acb5c8125a15ba94773f53447c", + "MSH_mshD.search_hmm.out:md5,7a6beef7568c8373772a38fd5608d724", + "MSH_mshE.res_hmm_extract:md5,30c5ca6558446657e31b78378f2b7b6d", + "MSH_mshE.search_hmm.out:md5,0125d7373061515243e8dfa76f936e0f", + "MSH_mshF.res_hmm_extract:md5,d0b1795dd34a054307ad0f4bfe9ea3bc", + "MSH_mshF.search_hmm.out:md5,98f0d3c277d2df6d11af75221eccfeec", + "MSH_mshG.res_hmm_extract:md5,e24d5033ebe5a5c93aafff4b6240a45b", + "MSH_mshG.search_hmm.out:md5,89fd58a58a135ceb2bb388520a307ce3", + "MSH_mshI.res_hmm_extract:md5,a10dcaeccc70ac5ea1e33b9dea0c080a", + "MSH_mshI.search_hmm.out:md5,8804e225634da986d806dc7b183de0f0", + "MSH_mshI2.res_hmm_extract:md5,df17dd557adeef90ee14692fb032685b", + "MSH_mshI2.search_hmm.out:md5,b0395ad201f84a4f4693882855465045", + "MSH_mshJ.res_hmm_extract:md5,3deea588d68229bd2586b218a62d94e2", + "MSH_mshJ.search_hmm.out:md5,3cf3f330355857835f03e64c5b236a60", + "MSH_mshK.res_hmm_extract:md5,51bbfc582592f8dbf6829ae73c70d038", + "MSH_mshK.search_hmm.out:md5,83fa19567d4022bfbd79c66186fb5936", + "MSH_mshL.res_hmm_extract:md5,12e70eda64f7aab86bd66bb43065111e", + "MSH_mshL.search_hmm.out:md5,3be388e0ee56c7c8e4bdb9aca7acfb9c", + "MSH_mshM.res_hmm_extract:md5,7d66860b049070f80b9c0446fbd01953", + "MSH_mshM.search_hmm.out:md5,f7d5eff9cf22519542c2ef34ab5eea68", + "MSH_mshN.res_hmm_extract:md5,121608acc986c0d215217d616fd9b104", + "MSH_mshN.search_hmm.out:md5,e681c37665bb83871886aa9a3d6845d2", + "MSH_mshO.res_hmm_extract:md5,928b330576433d523e1e721b9fe03ee3", + "MSH_mshO.search_hmm.out:md5,345a8f3771cae5b53eeb977a0a0f53d0", + "MSH_mshP.res_hmm_extract:md5,fb76de51218f671b27ea1dcad3dae493", + "MSH_mshP.search_hmm.out:md5,e18745aba4588e70a5daad7fca083ff9", + "MSH_mshQ.res_hmm_extract:md5,5d0af3fa9d5d1e034955ff176100e7f7", + "MSH_mshQ.search_hmm.out:md5,c30049b23fd8804676f1177108368d11", + "T1SS_abc.res_hmm_extract:md5,462b5d531a8da6d08f01a876795b75a5", + "T1SS_abc.search_hmm.out:md5,b680967d53e0175cb2925d567d4056bd", + "T1SS_mfp.res_hmm_extract:md5,6c5c427c07539f56fa5692eed9da12be", + "T1SS_mfp.search_hmm.out:md5,fd9ec34967693617954599960804b6b3", + "T1SS_omf.res_hmm_extract:md5,184a3948b7b78e9ec42e6617103896d7", + "T1SS_omf.search_hmm.out:md5,aebeeafc3e52fefdc40601b702b6c26f", + "T2SS_gspC.res_hmm_extract:md5,7add94d1b1f45405b55ed4630cc8f1fb", + "T2SS_gspC.search_hmm.out:md5,0ffd8d0abc966513690c7b67cc5ade04", + "T2SS_gspD.res_hmm_extract:md5,b1b37dc8ac1dbea8fd375b0e1ec268bd", + "T2SS_gspD.search_hmm.out:md5,c2fa1979ee543914fb2d4643f792d51e", + "T2SS_gspE.res_hmm_extract:md5,96896a0294b05cf20a0ecc4868da7c42", + "T2SS_gspE.search_hmm.out:md5,46232d76d2f0adbe7e35f825ee1c763c", + "T2SS_gspF.res_hmm_extract:md5,b0957439916f7f35ed7d0b4c76f2cb58", + "T2SS_gspF.search_hmm.out:md5,865739783aacaabe373a241572d9e017", + "T2SS_gspG.res_hmm_extract:md5,abb00e027b3839ac7104ebb3a93b06b4", + "T2SS_gspG.search_hmm.out:md5,f127cc5d93ce8655454edefc17987413", + "T2SS_gspH.res_hmm_extract:md5,b3163bf41a8f0c67afcf96d35936edcd", + "T2SS_gspH.search_hmm.out:md5,9a2f7e21ec32bb2ae7f08fe0f4b39bba", + "T2SS_gspI.res_hmm_extract:md5,59ed63a66c03ad0b603236c65f340a95", + "T2SS_gspI.search_hmm.out:md5,0d2f0185dae020126026de86b87685b2", + "T2SS_gspJ.res_hmm_extract:md5,81808092a7e6c19f2d17ed65c19f850a", + "T2SS_gspJ.search_hmm.out:md5,a033201171fbda441fa94481f012b639", + "T2SS_gspK.res_hmm_extract:md5,19509de3cf274c87d144852da65e3052", + "T2SS_gspK.search_hmm.out:md5,b770caca5c9536172e92a21d62b3e26f", + "T2SS_gspL.res_hmm_extract:md5,8204b284e703b6bf48b334bf9d0c48f4", + "T2SS_gspL.search_hmm.out:md5,e814c420975bc7a7a13809f67d3c1a7f", + "T2SS_gspM.res_hmm_extract:md5,d54720de67c1838f48b445b932e4e3ee", + "T2SS_gspM.search_hmm.out:md5,51c301227351781ce13cd4e842905737", + "T2SS_gspN.res_hmm_extract:md5,2a268bc24a51504952be757171f482e8", + "T2SS_gspN.search_hmm.out:md5,ce9bc22524c32e1cb596ec95effa55a3", + "T2SS_gspO.res_hmm_extract:md5,f02bfc220b84198bcf084774abc5eb50", + "T2SS_gspO.search_hmm.out:md5,c3bfcc87ed3b1ffca9e7bd0a58b3e141", + "T3SS_sctC.res_hmm_extract:md5,acb84bb0f7b5a38236c64d9e0a75a2b8", + "T3SS_sctC.search_hmm.out:md5,170b5adc6742957cbe00233c7f99fd43", + "T3SS_sctJ.res_hmm_extract:md5,4db29a1af87a3b04349fcaf0466e16fe", + "T3SS_sctJ.search_hmm.out:md5,49e6614c196c0035b6eb026292001950", + "T3SS_sctN.res_hmm_extract:md5,d92fa95f75b854f0327974f543641d01", + "T3SS_sctN.search_hmm.out:md5,4f80fced5002155898eeca373ae7dccc", + "T3SS_sctQ.res_hmm_extract:md5,5ab1769dde5229e4bac1e03cbe5b1b43", + "T3SS_sctQ.search_hmm.out:md5,1d9fe5f669c1542c22cebbff70b898fe", + "T3SS_sctR.res_hmm_extract:md5,aac7f82089b1d4d80db7af71e8a722f2", + "T3SS_sctR.search_hmm.out:md5,fbae265d2fa0f43d4b549b70bec11684", + "T3SS_sctS.res_hmm_extract:md5,d2ba91b2250fdfa05fe3403f96c5363f", + "T3SS_sctS.search_hmm.out:md5,c80ac38fd36c9eb6ccdb86242d759311", + "T3SS_sctT.res_hmm_extract:md5,7e57f8cb95e004f8b5922b27c6aeabe2", + "T3SS_sctT.search_hmm.out:md5,6cf28dce30f3240c8e67be9a93f65c89", + "T3SS_sctU.res_hmm_extract:md5,e852f58f7e09c3c221243db95312f7d6", + "T3SS_sctU.search_hmm.out:md5,5b35aaaa82ae88933461fe147552fdef", + "T3SS_sctV.res_hmm_extract:md5,39c761a7ae3c15ed02ae9180f6e8e836", + "T3SS_sctV.search_hmm.out:md5,6b128c83d11318fde6ee37d3cf9efa39", + "T4SS_I_traE.res_hmm_extract:md5,76b02f9d9b6074624f9457c58859dff8", + "T4SS_I_traE.search_hmm.out:md5,3df9c568c3b7ed1d4104a92170ac6220", + "T4SS_I_traI.res_hmm_extract:md5,8faa1d231a57095948ee36f9d6c9537a", + "T4SS_I_traI.search_hmm.out:md5,8fd339edca8a85dd9316c20f5591ebcd", + "T4SS_I_traK.res_hmm_extract:md5,2119b823616b54fb8f15b0a939e84381", + "T4SS_I_traK.search_hmm.out:md5,eb2085c53f255267a5ad4c89e2467a7c", + "T4SS_I_traL.res_hmm_extract:md5,788d8cf1fe39d60dfe123181fd5d5b15", + "T4SS_I_traL.search_hmm.out:md5,b18d3f794da80fb7d5b4b19867acd458", + "T4SS_I_traM.res_hmm_extract:md5,a9bd9e1c0e11151fb4486ab355658179", + "T4SS_I_traM.search_hmm.out:md5,905dd3dbf8d025cf3ffe168069412f4a", + "T4SS_I_traN.res_hmm_extract:md5,7b808cf767a0d39e7b6dcd6bf5bafe3b", + "T4SS_I_traN.search_hmm.out:md5,f04ad2e92b292f17f579338ed3377fd6", + "T4SS_I_traO.res_hmm_extract:md5,4aeaf3ca95dd3f32c6e6705e0beedf99", + "T4SS_I_traO.search_hmm.out:md5,7b1b8a9865c32912226ce7d9cc6dccde", + "T4SS_I_traP.res_hmm_extract:md5,29ba1b9f61471d55043ae14472f9b76a", + "T4SS_I_traP.search_hmm.out:md5,40d37c51739e9a80281f036dfcccb4c4", + "T4SS_I_traQ.res_hmm_extract:md5,c84cd4d6204c971652445492dc73a070", + "T4SS_I_traQ.search_hmm.out:md5,dee6492a659d912a59796330ed50e59b", + "T4SS_I_traR.res_hmm_extract:md5,a8ba195b68ce57a7479512da7a8fee6d", + "T4SS_I_traR.search_hmm.out:md5,9b6587fd268bbe5dc4724ccd76018f9a", + "T4SS_I_traT.res_hmm_extract:md5,b6340410427adfcf93785fe8b4548fc9", + "T4SS_I_traT.search_hmm.out:md5,ce74cd92f8dff792e8d2504b4449ea7c", + "T4SS_I_traW.res_hmm_extract:md5,2988e74fae2838c6c872f00c94305f69", + "T4SS_I_traW.search_hmm.out:md5,648737e291897e944a58d27de123845c", + "T4SS_I_traY.res_hmm_extract:md5,c8b06ef741828ffa1f48890eef144c6a", + "T4SS_I_traY.search_hmm.out:md5,fe3e2499f5a866782fa6f4e474676e0c", + "T4SS_I_trbA.res_hmm_extract:md5,a7ed77514fa982550897f6b15bbc9b50", + "T4SS_I_trbA.search_hmm.out:md5,def64a3d0f0b14cd5f5b40d18cf0ca81", + "T4SS_I_trbB.res_hmm_extract:md5,19b7b9599da877ff80d1e5c702b075c0", + "T4SS_I_trbB.search_hmm.out:md5,104fecd338315fd7957def39732caf66", + "T4SS_MOBB.res_hmm_extract:md5,d174e46112f815c158f929df3629f11b", + "T4SS_MOBB.search_hmm.out:md5,a4537634a3f3913f77bae328bf9520e5", + "T4SS_T_virB1.res_hmm_extract:md5,7c6ff90d31865141a74d18971c0e22ec", + "T4SS_T_virB1.search_hmm.out:md5,08795870a955b00761472ce63c32565a", + "T4SS_T_virB10.res_hmm_extract:md5,a93ba465e091a21f30748ba012f63434", + "T4SS_T_virB10.search_hmm.out:md5,941fd79a95a7a9ca43d2865ff3260915", + "T4SS_T_virB11.res_hmm_extract:md5,2da5667ae1d267c7128534da0496e240", + "T4SS_T_virB11.search_hmm.out:md5,eb9553259ed336ad384fa27bc4d844cc", + "T4SS_T_virB2.res_hmm_extract:md5,327b0ece02072e43a54f895da75e2911", + "T4SS_T_virB2.search_hmm.out:md5,ba911b71751dd7628eb4659d8bc0ec1d", + "T4SS_T_virB3.res_hmm_extract:md5,ae5dd75dc06bddf487d8db7f50875be9", + "T4SS_T_virB3.search_hmm.out:md5,d9e6f5b88bf94e3c143b82d88eeb33b4", + "T4SS_T_virB5.res_hmm_extract:md5,c59105cfd1302d4c058edd453b897822", + "T4SS_T_virB5.search_hmm.out:md5,c2e52c08be6b9b8428c4469e889729e5", + "T4SS_T_virB6.res_hmm_extract:md5,2d30f10b659416588a3110581ab07170", + "T4SS_T_virB6.search_hmm.out:md5,66cf15640e60a5d71cf72287c0d85463", + "T4SS_T_virB8.res_hmm_extract:md5,ec86198137fe57b8cb286ba7df74f659", + "T4SS_T_virB8.search_hmm.out:md5,e891be11edf5c6485982f7881fe8c482", + "T4SS_T_virB9.res_hmm_extract:md5,ec7a1bede17b0dab0842fda61f71b05d", + "T4SS_T_virB9.search_hmm.out:md5,153efe56a9ba779506377bebec353dc3", + "T4SS_t4cp1.res_hmm_extract:md5,92fa7f346dfd600b061f6bb693e0392f", + "T4SS_t4cp1.search_hmm.out:md5,8c4c6057ed0cc8f9065d782ede88c1dc", + "T4SS_virb4.res_hmm_extract:md5,055a8f4cb752491e5aed80cb948649da", + "T4SS_virb4.search_hmm.out:md5,78d5f624fb0f74672d13550081aea909", + "T4aP_fimT.res_hmm_extract:md5,f1d05d2263de9cf3575ef97ca67e33b3", + "T4aP_fimT.search_hmm.out:md5,7e0d71ffed38df5dd2bfd7baeaf10af9", + "T4aP_pilA.res_hmm_extract:md5,777a3f59ac7c05e248fbcb0ca7ca6d2e", + "T4aP_pilA.search_hmm.out:md5,44eeff94c9e0a937aa6bb8afcafb3b0d", + "T4aP_pilB.res_hmm_extract:md5,6295c3b37484f745e338e56a6d359832", + "T4aP_pilB.search_hmm.out:md5,5abbac12b1a7c3b75060072aa46db327", + "T4aP_pilC.res_hmm_extract:md5,6ec4bc6838dc72742b9784b7890ce846", + "T4aP_pilC.search_hmm.out:md5,7c9825ab073984a3e29fd5cbaec823c4", + "T4aP_pilD.res_hmm_extract:md5,8fde0b8f29b32946377c77cf57016c5d", + "T4aP_pilD.search_hmm.out:md5,2e0b4e8053a1ce2fd59f40902b243123", + "T4aP_pilE.res_hmm_extract:md5,fc7d4d68df01ea9b98675ae6732b7f2b", + "T4aP_pilE.search_hmm.out:md5,1793c37486ac6f25bb05e05435c879ae", + "T4aP_pilM.res_hmm_extract:md5,43d32b05335f573db73e0e7ae5378dd4", + "T4aP_pilM.search_hmm.out:md5,2f63977514befbcc7d90adeb401356ca", + "T4aP_pilN.res_hmm_extract:md5,9bc6431c9cb374d8d13b622006691e9c", + "T4aP_pilN.search_hmm.out:md5,1a61ec68942541f6005b40286807bd8f", + "T4aP_pilO.res_hmm_extract:md5,209f1ccb9f2fed8a007230b67cff0bde", + "T4aP_pilO.search_hmm.out:md5,93d324392e0893c9ec3e98d92fdcd73d", + "T4aP_pilP.res_hmm_extract:md5,bd16883fd31696acb954c2634a977c93", + "T4aP_pilP.search_hmm.out:md5,27f872f4cbc33b4a4a2de208aeb09766", + "T4aP_pilQ.res_hmm_extract:md5,7bcbe6f36447a9be8f10bd4151ac7710", + "T4aP_pilQ.search_hmm.out:md5,98a8c8382e661b68f5f39d1e0cbaf76e", + "T4aP_pilT.res_hmm_extract:md5,6d6289b3bdd4f6c73d23cda27a5d208d", + "T4aP_pilT.search_hmm.out:md5,a6b4b6823b666e6efcc2ac45dd784b9d", + "T4aP_pilU.res_hmm_extract:md5,926f2883123349964cea0df6c8d3443d", + "T4aP_pilU.search_hmm.out:md5,f60e10345ffbbe834c00b5b3b5eecb14", + "T4aP_pilV.res_hmm_extract:md5,4c6fa9f233ee8427453412272fbea6fe", + "T4aP_pilV.search_hmm.out:md5,05dc2f3cf5f07e555f30a2018736a7be", + "T4aP_pilW.res_hmm_extract:md5,51ad5d515cd37488e4b4683ccbf7d38d", + "T4aP_pilW.search_hmm.out:md5,d8824fc38d9709079e8a82566d27e70f", + "T4aP_pilX.res_hmm_extract:md5,75ad720a0847d28a402d30f327efaf7c", + "T4aP_pilX.search_hmm.out:md5,4883323a6c79278e393484fb07477563", + "T4aP_pilY.res_hmm_extract:md5,d3ff147d7cc55b0f2a832e75d49c4817", + "T4aP_pilY.search_hmm.out:md5,9cfb7315f897e71d9d2bd28c1287f667", + "T4aP_pilZ.res_hmm_extract:md5,427f08bd2b01cedfe30e9f75d6a03a3f", + "T4aP_pilZ.search_hmm.out:md5,966d34511cbc4c70acd32d5d4aeccd62", + "T4bP_pilA.res_hmm_extract:md5,f4e220b4179146feef451520fe54bcd1", + "T4bP_pilA.search_hmm.out:md5,ee84026af31e0e50c3a22534ee7d840d", + "T4bP_pilB.res_hmm_extract:md5,9e3e4af49c4e7891ff390b4397121c75", + "T4bP_pilB.search_hmm.out:md5,c368d37cca7bc08b1ec2a7076a393f34", + "T4bP_pilC.res_hmm_extract:md5,435be571e27d34340d99510c4b0cb643", + "T4bP_pilC.search_hmm.out:md5,4886497f4133d9f31585d3e04b91b052", + "T4bP_pilD.res_hmm_extract:md5,44469eaf990a33e145675802db2d5c01", + "T4bP_pilD.search_hmm.out:md5,bad892785eefcc81155108beb39e92dd", + "T4bP_pilE.res_hmm_extract:md5,6c286c7b59bf32aa4cb8f1b63429a922", + "T4bP_pilE.search_hmm.out:md5,f5634a1514cfa260f403a3511903cc50", + "T4bP_pilP.res_hmm_extract:md5,3a3fc807018af8aeb8a21ead73021760", + "T4bP_pilP.search_hmm.out:md5,2a6cf27e44718df851d759c878a327bc", + "T4bP_pilQ.res_hmm_extract:md5,5fb75575e946f4ce750d55dd236e0716", + "T4bP_pilQ.search_hmm.out:md5,679151f0d1268c9db8373b7d49243661", + "T4bP_pilT.res_hmm_extract:md5,28acaee83b02fec087e98957a82ac8d8", + "T4bP_pilT.search_hmm.out:md5,b95e3d53b7ed69bfc7947bfe9bc86d8a", + "T5aSS_PF03797.res_hmm_extract:md5,89566d17da337e992c90005c2d8f0c3e", + "T5aSS_PF03797.search_hmm.out:md5,5aa908d85b7039c97fd2c2fe36de5b18", + "T5bSS_translocator.res_hmm_extract:md5,696d041ca1b3d6b3a82f3f3e8eb95e38", + "T5bSS_translocator.search_hmm.out:md5,0e9904467ab296dc43caad69aecc96ba", + "T5cSS_PF03895.res_hmm_extract:md5,8667291c59329f1abb9e4ee80b717ece", + "T5cSS_PF03895.search_hmm.out:md5,41debbfb3e4a080b1a76a00a73690976", + "T6SSi_evpJ.res_hmm_extract:md5,c88c6f8d6e1fc4033294add2ffc19054", + "T6SSi_evpJ.search_hmm.out:md5,83be29810c325dc8eceef1bd649c7cb5", + "T6SSi_tssA.res_hmm_extract:md5,80db558c857e08eec4c75406eec8031b", + "T6SSi_tssA.search_hmm.out:md5,6a7411d611be4f9c2029dd57e5f0681d", + "T6SSi_tssB.res_hmm_extract:md5,a41b0f49721979a62bd6d724dd3ce0a0", + "T6SSi_tssB.search_hmm.out:md5,4a70609282698daf3e5556d05be2363b", + "T6SSi_tssC.res_hmm_extract:md5,28a90aef0fadabff39eba77fbf107511", + "T6SSi_tssC.search_hmm.out:md5,2964adda9b5b12583978b9863aa6f611", + "T6SSi_tssD.res_hmm_extract:md5,230df7de16fac79d35ba723e1ff7a0c4", + "T6SSi_tssD.search_hmm.out:md5,bdbe144aeaf7d1d3b366f41273b29bb4", + "T6SSi_tssE.res_hmm_extract:md5,9e61705bbbe124752ec8bdc534965999", + "T6SSi_tssE.search_hmm.out:md5,3968a04ed3d8fac234f0b7018b01af5c", + "T6SSi_tssF.res_hmm_extract:md5,e50d87c22c06599628e9464fba69459c", + "T6SSi_tssF.search_hmm.out:md5,0a9c6db7f379c14f7b58292bb38e91fe", + "T6SSi_tssG.res_hmm_extract:md5,9668c28f3611645b85b0db92ecedf0a3", + "T6SSi_tssG.search_hmm.out:md5,fb41fb5fcfe0c19bc328c9643b3378f1", + "T6SSi_tssH.res_hmm_extract:md5,86a3448e9e7e1f4bff06deb754ef5592", + "T6SSi_tssH.search_hmm.out:md5,c5c016eb0608cdf31fa479b3dbddee4f", + "T6SSi_tssI.res_hmm_extract:md5,2810a6a8e48e8663d56684f52d1f4a69", + "T6SSi_tssI.search_hmm.out:md5,87feeda88abd5c1edd931b3d64312036", + "T6SSi_tssJ.res_hmm_extract:md5,d7699c0df136c12ca6af78acde4f3195", + "T6SSi_tssJ.search_hmm.out:md5,4f6fc09ccd02db9cdf55cd392066b86c", + "T6SSi_tssK.res_hmm_extract:md5,e46de0bb694048aa86390f42c7e336ea", + "T6SSi_tssK.search_hmm.out:md5,5dc140ae9ebf35085e4495ea344947e6", + "T6SSi_tssL.res_hmm_extract:md5,a83726c88dd43649531e116dace2b61c", + "T6SSi_tssL.search_hmm.out:md5,f27e976f9909c35403881d0e2703fc55", + "T6SSi_tssM.res_hmm_extract:md5,59c2f8508abf3464b83b55c2f8a9e3b9", + "T6SSi_tssM.search_hmm.out:md5,e921dbccf846f91b389a0ecc81eae785", + "T6SSii_dotU.res_hmm_extract:md5,b8c36fd7e1165c19fb778f681255d6fa", + "T6SSii_dotU.search_hmm.out:md5,c0b6db00c107302af2530c1833e2c17c", + "T6SSii_iglA.res_hmm_extract:md5,75fccf707db49f8b2265434eac7e88a0", + "T6SSii_iglA.search_hmm.out:md5,9f5aa524480cea798c09fc14d34d9e58", + "T6SSii_iglB.res_hmm_extract:md5,42b1ec1615db9871bb5504069d1a0368", + "T6SSii_iglB.search_hmm.out:md5,0274048afdb0c7f72b7b9f0f0d919fec", + "T6SSii_iglC.res_hmm_extract:md5,f4e63897bc48430eae34a5482e65b8c5", + "T6SSii_iglC.search_hmm.out:md5,e2bdb8edb818ed53e584bf68ee8a12bf", + "T6SSii_iglD.res_hmm_extract:md5,425d7379b8df3fd4736313107fbfe3d6", + "T6SSii_iglD.search_hmm.out:md5,5d98d41991a1fca9b8d4e988c374fdf9", + "T6SSii_iglE.res_hmm_extract:md5,33375107b9abc09794dd3c965bdce8a7", + "T6SSii_iglE.search_hmm.out:md5,c710ff6a10e4aa35dde68e637cd37d5c", + "T6SSii_iglF.res_hmm_extract:md5,302aa9c5db2b77d1caf0ac761efa569d", + "T6SSii_iglF.search_hmm.out:md5,55a06b84ff67adab253895d25d61696e", + "T6SSii_iglG.res_hmm_extract:md5,22771f69e684483e43fd60ad4603a06c", + "T6SSii_iglG.search_hmm.out:md5,a10c896d6ce5798357588af045451856", + "T6SSii_iglH.res_hmm_extract:md5,df59cbd86cd91e455d8428ef52493530", + "T6SSii_iglH.search_hmm.out:md5,2370cd5574a36d300262687fde44558c", + "T6SSii_iglI.res_hmm_extract:md5,ea57a4ccf4e65fd121c643f3e6b889ce", + "T6SSii_iglI.search_hmm.out:md5,1bbea8235fdb1cce6b702de28dd01408", + "T6SSii_iglJ.res_hmm_extract:md5,dd464dd13b1a6e065fc61aed892a3b49", + "T6SSii_iglJ.search_hmm.out:md5,a83b6bc324a3d832c08d2deb79bbfd57", + "T6SSii_pdpA.res_hmm_extract:md5,49c970b420ff4d105607e0f713ecd8f0", + "T6SSii_pdpA.search_hmm.out:md5,60712db65adac5e7c831879e2902b874", + "T6SSii_pdpB.res_hmm_extract:md5,655935e16e6d400641bba10f20e999ef", + "T6SSii_pdpB.search_hmm.out:md5,01c9a365fa17739264b672ea064c0ab4", + "T6SSii_pdpC.res_hmm_extract:md5,a63d3054d6b6ed3961517cbe5143494b", + "T6SSii_pdpC.search_hmm.out:md5,2bda5410be509cbaccac16bd46370842", + "T6SSii_pdpD.res_hmm_extract:md5,f5c7f9a010c69ee2e51eb31ed9bb57e1", + "T6SSii_pdpD.search_hmm.out:md5,db6c4d8c973009d939cf096853c22a2f", + "T6SSii_pdpE.res_hmm_extract:md5,64b3d775524f88f7d91f0f4ccf3b4b60", + "T6SSii_pdpE.search_hmm.out:md5,aa89331ca24015a405409f6ca903d0f1", + "T6SSii_vgrG.res_hmm_extract:md5,02dd667fa112a6be540a677f99636a6e", + "T6SSii_vgrG.search_hmm.out:md5,e60607682f7a84d3f33c5551f00de0b1", + "T6SSiii_tssB.res_hmm_extract:md5,6e08b2de71359300352aaa714152eb19", + "T6SSiii_tssB.search_hmm.out:md5,e0796bcc359adbcc098f9705aec70e9c", + "T6SSiii_tssC.res_hmm_extract:md5,dc199f972fa30a61b484818f3f959919", + "T6SSiii_tssC.search_hmm.out:md5,a52596b75f6e09d78d28bfb1a5d0d88f", + "T6SSiii_tssD.res_hmm_extract:md5,64dabf727680658ea5e57b38a99272a7", + "T6SSiii_tssD.search_hmm.out:md5,d106f47138a4284eaef2c8b8c7b8e83b", + "T6SSiii_tssE.res_hmm_extract:md5,8e9b126dd88e946a80df8100c115b482", + "T6SSiii_tssE.search_hmm.out:md5,7f36b234e4e2d87c27b201f75d4f8b96", + "T6SSiii_tssF.res_hmm_extract:md5,5f11f432fc8d23c44e51aceecadfdeff", + "T6SSiii_tssF.search_hmm.out:md5,da484d8737697eb4a5e801b8990f93b5", + "T6SSiii_tssG.res_hmm_extract:md5,9428f67ca4a3941dc7472c084834d038", + "T6SSiii_tssG.search_hmm.out:md5,7665d63f28195dc7bbe553a70b71f3ad", + "T6SSiii_tssH.res_hmm_extract:md5,da9b45b99265d326d9cb1c915fb7ecbb", + "T6SSiii_tssH.search_hmm.out:md5,1c9360f5971a60ab6d48539740dde1d4", + "T6SSiii_tssI.res_hmm_extract:md5,7fdc8c0fbd119726f6a7af7dd5a692f9", + "T6SSiii_tssI.search_hmm.out:md5,c2e368b500b1961dcf0989497bf21bc7", + "T6SSiii_tssK.res_hmm_extract:md5,d26803063d67d4e5a6fac95b3ddfbdb9", + "T6SSiii_tssK.search_hmm.out:md5,1f135c1783881800db3319227707ad16", + "T6SSiii_tssN.res_hmm_extract:md5,36551f35bd3a8b4677241f89628df3e7", + "T6SSiii_tssN.search_hmm.out:md5,13e073507cb02a78f838157f8999ad0f", + "T6SSiii_tssO.res_hmm_extract:md5,adc65541028c5d2aa0fbf69086f1ff73", + "T6SSiii_tssO.search_hmm.out:md5,3239089dfcbf10105a05d52a38177e7c", + "T6SSiii_tssP.res_hmm_extract:md5,ee654bb2c074ca14867c9ac65edf9360", + "T6SSiii_tssP.search_hmm.out:md5,5d4a4dd03c6f7f8fdd9fdea7d7821e4b", + "T6SSiii_tssQ.res_hmm_extract:md5,5b22fdee0efe439d147cd8f920a6753c", + "T6SSiii_tssQ.search_hmm.out:md5,f417f71cdf3ff5f5985ebb9cea445d78", + "T6SSiii_tssR.res_hmm_extract:md5,e31da25536abce2e480cb4c88db72e22", + "T6SSiii_tssR.search_hmm.out:md5,c6fe42daee3d13691eadc0d6f22119e9", + "T9SS_gldJ_TIGR03524.res_hmm_extract:md5,b84ab0cf11e8f1b1e63d087138221c6c", + "T9SS_gldJ_TIGR03524.search_hmm.out:md5,f56947f6ab9bb0e7539ab0ff2e943ac0", + "T9SS_gldK_TIGR03525.res_hmm_extract:md5,361a178dbcaae6bf207611ec6d84c76e", + "T9SS_gldK_TIGR03525.search_hmm.out:md5,1f4351f0b97b1f14c36029680bc3f5b0", + "T9SS_gldL_TIGR03513.res_hmm_extract:md5,9ef2e5d74b5ad9bf0e413d5a90ed7c04", + "T9SS_gldL_TIGR03513.search_hmm.out:md5,5714b2aba562c592b8dd37721a6632e5", + "T9SS_gldM_TIGR03517.res_hmm_extract:md5,d926052ea68524d388f3a9aff23eec82", + "T9SS_gldM_TIGR03517.search_hmm.out:md5,9a193c33467e3a124280b16e9791be77", + "T9SS_gldN_TIGR03523.res_hmm_extract:md5,523809edcddd1c39be1cb00b03733038", + "T9SS_gldN_TIGR03523.search_hmm.out:md5,6f1deba2a8f3edd227bae7809f383372", + "T9SS_porQ.res_hmm_extract:md5,b6d5716dabdf33a535858e840a772121", + "T9SS_porQ.search_hmm.out:md5,5dc32c1163f486504d210b345d9fdb4a", + "T9SS_porU.res_hmm_extract:md5,dcd46e5bc61936adaf0b3d96ef12ed6f", + "T9SS_porU.search_hmm.out:md5,49854aa9ee38b59f411fada9fb454d27", + "T9SS_porV.res_hmm_extract:md5,b6fd0c06b09255a9529ed97f51f10c7a", + "T9SS_porV.search_hmm.out:md5,90fcd9ab3fa5648d1ed75c4c57961cb8", + "T9SS_sprA-2_PF12118.res_hmm_extract:md5,94802dcd9b4b1cd21652df15f75eb2ee", + "T9SS_sprA-2_PF12118.search_hmm.out:md5,1a36801de175d7cade8ba26b0be5d0c2", + "T9SS_sprA-3_TIGR04189.res_hmm_extract:md5,e63cc6fa6645bbd2c02d1ccba75ac233", + "T9SS_sprA-3_TIGR04189.search_hmm.out:md5,2f5240974ee1637be1024c81f397bacf", + "T9SS_sprA_PF14349.res_hmm_extract:md5,63d7bebf48708f822fd4e461f63df352", + "T9SS_sprA_PF14349.search_hmm.out:md5,0cd859ac716f11dc4bd9bf9c9d1f0a1d", + "T9SS_sprE.res_hmm_extract:md5,009496d8536f40e7c4467a7ea31388dc", + "T9SS_sprE.search_hmm.out:md5,61efdd6c1155d2f21395ee499d75fb4b", + "T9SS_sprT.res_hmm_extract:md5,884c25d69d7c333e1e174cee11165a20", + "T9SS_sprT.search_hmm.out:md5,56373b28c2706596bf3430b556d44123", + "Tad_flp.res_hmm_extract:md5,fdfef9516142fa56b4d57f72dde8e7fa", + "Tad_flp.search_hmm.out:md5,4df4499b7fa6a9244afbe34af939ce6a", + "Tad_rcpA.res_hmm_extract:md5,5c552bda8122268190093c00254b18b9", + "Tad_rcpA.search_hmm.out:md5,ba574ae238dca7fa71235040e9ab2bae", + "Tad_rcpB.res_hmm_extract:md5,2f3f4368130ceb04d40780b51216f220", + "Tad_rcpB.search_hmm.out:md5,7d672ede433112e320d8ce8f4a4331df", + "Tad_rcpC.res_hmm_extract:md5,2d439f356bbb9567dc8b8beb103363ec", + "Tad_rcpC.search_hmm.out:md5,c3360d82ffec63c060af590694e3fa0a", + "Tad_tadA.res_hmm_extract:md5,678a2e2966385b0c0ba1104965242f8d", + "Tad_tadA.search_hmm.out:md5,5d70163233f35181b57c6efe32757bc7", + "Tad_tadB.res_hmm_extract:md5,6632f3c16b85fd1bf1bcfc8cf335f325", + "Tad_tadB.search_hmm.out:md5,ba431ddcd2360a6601bde27ac0322f6e", + "Tad_tadC.res_hmm_extract:md5,f03360cd0dcfde30f8b5316328811fd8", + "Tad_tadC.search_hmm.out:md5,7cb1601affc9467dd2027b02334991b0", + "Tad_tadD.res_hmm_extract:md5,7794f3cd5c058569f99666d339d49542", + "Tad_tadD.search_hmm.out:md5,715478925790c4ffceb9f8298cfbea40", + "Tad_tadE.res_hmm_extract:md5,0e61f3f0e01244f711d36b79c52b7598", + "Tad_tadE.search_hmm.out:md5,ac801ac2a7ca66cfc4041e8be51a1c67", + "Tad_tadF.res_hmm_extract:md5,a878447b96e96563ac1a8ee2f2a272e6", + "Tad_tadF.search_hmm.out:md5,0676dd29e4cd8bbb1c594780014117ce", + "Tad_tadG.res_hmm_extract:md5,751b28273bb078309f2f19e24339e46a", + "Tad_tadG.search_hmm.out:md5,375f594a1980bc5e89fe244275578ea4", + "Tad_tadV.res_hmm_extract:md5,34bef92f323da28701ed1d6a225eac01", + "Tad_tadV.search_hmm.out:md5,231fc30ae8115a6d102f599e71dd9cea", + "Tad_tadZ.res_hmm_extract:md5,9b3a26aabce5c5cc53fc010f158ebd08", + "Tad_tadZ.search_hmm.out:md5,c1b7a9ab494c2219f6e5d77f6c17509f" + ], + "macsyfinder.conf:md5,6aacda54da0b40c12dc8c383f48ccad0", + "macsyfinder.log:md5,323e8b38dfdd2a8c497e24ddc52d18b3", + "macsyfinder.out:md5,29765895aec165cd6a580832820000c9", + "uncomplete_systems.txt:md5,f05bbbc2f47f1437858bc308c324d34c" + ] + ] + ], + "stderr": [ + + ], + "stdout": [ + [ + { + "id": "test" + }, + "macsyfinder.out:md5,29765895aec165cd6a580832820000c9" + ] + ], + "summary": [ + [ + { + "id": "test" + }, + "all_systems.tsv:md5,dd6fd88699412463a057a1ef98d84168" + ] + ], + "versions_hmmer": [ + [ + "MACSYFINDER_SEARCH", + "hmmer", + "3.4" + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_SEARCH", + "macsyfinder", + "2.1.6" + ] + ] + }, + { + "versions_hmmer": [ + [ + "MACSYFINDER_SEARCH", + "hmmer", + "3.4" + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_SEARCH", + "macsyfinder", + "2.1.6" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2026-02-26T13:53:07.866815605" + }, + "macsyfinder_search - proteins - fasta.gz": { + "content": [ + { + "best_solutions": [ + + ], + "results": [ + [ + { + "id": "test" + }, + [ + "all_systems.tsv:md5,3ed7f4c36c862524604191711581a2a1", + "all_systems.txt:md5,d79fe092890436117db1eacbcedaa52b", + [ + "Archaeal-T4P_arCOG00589.res_hmm_extract:md5,17e94b2a26f6a76a7f81391c85fb51cd", + "Archaeal-T4P_arCOG00589.search_hmm.out:md5,251c7aefe9b5699bc668d478d397fc3e", + "Archaeal-T4P_arCOG01808.res_hmm_extract:md5,8fb013fb86bfb7b9fb65de8f65e00bab", + "Archaeal-T4P_arCOG01808.search_hmm.out:md5,47b00503bd386d94b4d96687d5cc9b8b", + "Archaeal-T4P_arCOG01809_IM.res_hmm_extract:md5,5df6f53e1b7b2a1f9142dff826e7028c", + "Archaeal-T4P_arCOG01809_IM.search_hmm.out:md5,49f58432204bf20f7ab498c873e15522", + "Archaeal-T4P_arCOG01810.res_hmm_extract:md5,61f59f82a8b4befd34c675f74dd177a0", + "Archaeal-T4P_arCOG01810.search_hmm.out:md5,7baac34b1bc420659220d923882844e3", + "Archaeal-T4P_arCOG01811.res_hmm_extract:md5,db968bb07bc617ece38423a5708b947c", + "Archaeal-T4P_arCOG01811.search_hmm.out:md5,ab4f82b9a99874047b5ff21299701408", + "Archaeal-T4P_arCOG01812.res_hmm_extract:md5,c7e9e51e9537d49409c850b3c0093942", + "Archaeal-T4P_arCOG01812.search_hmm.out:md5,5f4181f2172312aae624360cc55457fe", + "Archaeal-T4P_arCOG01814.res_hmm_extract:md5,d17cf15299cc9169ef081029b1401bcd", + "Archaeal-T4P_arCOG01814.search_hmm.out:md5,0ca1af8c403a92574c313d9857e001f5", + "Archaeal-T4P_arCOG01815.res_hmm_extract:md5,b8354bf8c7bf8260b96db07c0fd4d00a", + "Archaeal-T4P_arCOG01815.search_hmm.out:md5,67cd59e457ecb1e426b9d7e7b143a59c", + "Archaeal-T4P_arCOG01817_ATP.res_hmm_extract:md5,9eaa0c8638017181e4b6837419cb4e14", + "Archaeal-T4P_arCOG01817_ATP.search_hmm.out:md5,3887260c26c21dd612568fbd9c717245", + "Archaeal-T4P_arCOG01818.res_hmm_extract:md5,eb7a50653be2897f6b688f270dcbee63", + "Archaeal-T4P_arCOG01818.search_hmm.out:md5,f17e5d81221b42bb610fb53ea9506c1a", + "Archaeal-T4P_arCOG01822.res_hmm_extract:md5,ef8cb091a566b6f588f762bc74b81d8c", + "Archaeal-T4P_arCOG01822.search_hmm.out:md5,280c2e6a3906fef4bd1ae403e38f761a", + "Archaeal-T4P_arCOG01824.res_hmm_extract:md5,1d54470884b0afd8eb6307521cbc8d0e", + "Archaeal-T4P_arCOG01824.search_hmm.out:md5,09ae945098457300c02bcb014b4287e2", + "Archaeal-T4P_arCOG01829_Pil.res_hmm_extract:md5,740a7618369733f9be70714bd34c4c9a", + "Archaeal-T4P_arCOG01829_Pil.search_hmm.out:md5,0e25424340a97d3b7cacd5281f6cf373", + "Archaeal-T4P_arCOG02298_PP.res_hmm_extract:md5,86e1d6a8aa951b9d20f9d6f485a8122b", + "Archaeal-T4P_arCOG02298_PP.search_hmm.out:md5,aea69021d61648f566a67e0c177332b1", + "Archaeal-T4P_arCOG02300.res_hmm_extract:md5,eeda2d2f138017f9c852f66d0a596128", + "Archaeal-T4P_arCOG02300.search_hmm.out:md5,0fd470769becc3202456ecefaa54eb01", + "Archaeal-T4P_arCOG02394.res_hmm_extract:md5,bdaffbaee5dee88714dd791ed13877d4", + "Archaeal-T4P_arCOG02394.search_hmm.out:md5,265ebb5607cc8995184375e3dc1916be", + "Archaeal-T4P_arCOG02396.res_hmm_extract:md5,544b39dc138cad12bed956295a6e1547", + "Archaeal-T4P_arCOG02396.search_hmm.out:md5,db910b6022fd01a83ebe8d9751f19a1d", + "Archaeal-T4P_arCOG02416.res_hmm_extract:md5,c17dce95f7c97c6f2a190a7873477b88", + "Archaeal-T4P_arCOG02416.search_hmm.out:md5,607d381c07e185a5001321e4fde43562", + "Archaeal-T4P_arCOG02419.res_hmm_extract:md5,e7c999de82e1b3ff321dc06dc10b51c7", + "Archaeal-T4P_arCOG02419.search_hmm.out:md5,52741cc45a0992f549c28d0d5a6c3c34", + "Archaeal-T4P_arCOG02420.res_hmm_extract:md5,93196dadbfdead5d69a990586fa92e5d", + "Archaeal-T4P_arCOG02420.search_hmm.out:md5,fa47c6cb00bf247c4664b4d0b8febc22", + "Archaeal-T4P_arCOG02421.res_hmm_extract:md5,9ec117e6b0633c3ffd1fa1b224e7f07d", + "Archaeal-T4P_arCOG02421.search_hmm.out:md5,838d7951c24e83f90008216e677fb2df", + "Archaeal-T4P_arCOG02425.res_hmm_extract:md5,227ec3ce5d8ffc3d37e10ef6c8513245", + "Archaeal-T4P_arCOG02425.search_hmm.out:md5,a1dd6c2522a8581ae46e9598f5fe93a2", + "Archaeal-T4P_arCOG02900.res_hmm_extract:md5,08edbc51f9b250e5b365a6cf01f1984c", + "Archaeal-T4P_arCOG02900.search_hmm.out:md5,f0d6ea1dcac6747f17e5fd8f61190546", + "Archaeal-T4P_arCOG02911.res_hmm_extract:md5,ed97e3efbaad7ae3c5e09c0a678b8468", + "Archaeal-T4P_arCOG02911.search_hmm.out:md5,8025d994f75366209e413cb180df31c7", + "Archaeal-T4P_arCOG02916.res_hmm_extract:md5,ab5c67a81a0bb35888aabdd33247bfc6", + "Archaeal-T4P_arCOG02916.search_hmm.out:md5,fe19bb50dd00b62277905472774cba7c", + "Archaeal-T4P_arCOG02963.res_hmm_extract:md5,28dcf6a5a2a608781e3c4d893b617112", + "Archaeal-T4P_arCOG02963.search_hmm.out:md5,7b5528ba22bc3f1f461d8c9f99bad0b4", + "Archaeal-T4P_arCOG02964.res_hmm_extract:md5,6653d65b493e810ecb3c8b72bcf18552", + "Archaeal-T4P_arCOG02964.search_hmm.out:md5,c446583a781b97e9c00cf46cfac8e4ef", + "Archaeal-T4P_arCOG02981.res_hmm_extract:md5,bc84d37cb142c05b6e61c4d4f53e4c2d", + "Archaeal-T4P_arCOG02981.search_hmm.out:md5,d382504d05df698866713f06d8fe7e0c", + "Archaeal-T4P_arCOG03360.res_hmm_extract:md5,2f23ebb82e162c590a17d2478d5438dc", + "Archaeal-T4P_arCOG03360.search_hmm.out:md5,393a13ce0fc210870118fe4486633e90", + "Archaeal-T4P_arCOG03422.res_hmm_extract:md5,4f8ee92a6bc226c89c9ad2708296c628", + "Archaeal-T4P_arCOG03422.search_hmm.out:md5,955e856ae7419f5b35ea4abd8aab3ff9", + "Archaeal-T4P_arCOG03511.res_hmm_extract:md5,295258359d3075ca9b75b2ca471bae64", + "Archaeal-T4P_arCOG03511.search_hmm.out:md5,349ee9a3f3d87bd2fa76289dc4024359", + "Archaeal-T4P_arCOG03821.res_hmm_extract:md5,92b55aaab7b1218a5ae4338aca659d93", + "Archaeal-T4P_arCOG03821.search_hmm.out:md5,2efdf61fc918e6b6ca4ba0b3c1030d05", + "Archaeal-T4P_arCOG03870.res_hmm_extract:md5,f62feeb8022e20684dd22637955ec4a9", + "Archaeal-T4P_arCOG03870.search_hmm.out:md5,905a3d732807aa3f58b943fefd90788f", + "Archaeal-T4P_arCOG03871.res_hmm_extract:md5,fd1500962028ce4c2570155415963c48", + "Archaeal-T4P_arCOG03871.search_hmm.out:md5,4a8c36d76563c64c05c9d8e4439748f5", + "Archaeal-T4P_arCOG03872.res_hmm_extract:md5,434f3120597bccf4cb54814cf619a034", + "Archaeal-T4P_arCOG03872.search_hmm.out:md5,a9b0279b45607df6bfa5e736dd291b14", + "Archaeal-T4P_arCOG03926.res_hmm_extract:md5,943b157723d68e103667508299dbfae8", + "Archaeal-T4P_arCOG03926.search_hmm.out:md5,9c1db146016a01adc6c1523c941039ab", + "Archaeal-T4P_arCOG03933.res_hmm_extract:md5,fd13c5b3658c9833f8a23970ff87c627", + "Archaeal-T4P_arCOG03933.search_hmm.out:md5,69d2ebe1dff2e482fbc197d2aa40ee71", + "Archaeal-T4P_arCOG04026.res_hmm_extract:md5,4469e435063eaa5274ec5a4b2d6c60f8", + "Archaeal-T4P_arCOG04026.search_hmm.out:md5,5beea98b05561e3f7ab019e2e7c5ca57", + "Archaeal-T4P_arCOG04148.res_hmm_extract:md5,53b6c2e44deafb49e9b40e20516b3e79", + "Archaeal-T4P_arCOG04148.search_hmm.out:md5,a11efef2623abe7d3174bfda9e268ee4", + "Archaeal-T4P_arCOG04652.res_hmm_extract:md5,50a6edfe98621c234b89ff3112c92e9e", + "Archaeal-T4P_arCOG04652.search_hmm.out:md5,4871a32f3c3c01725a3c65159fe2f957", + "Archaeal-T4P_arCOG04673.res_hmm_extract:md5,f5d6a5164d858d6cc933a15e425a1431", + "Archaeal-T4P_arCOG04673.search_hmm.out:md5,3d1e0d51861ee28b7d6ef7596dbc32db", + "Archaeal-T4P_arCOG04679.res_hmm_extract:md5,633229b3161175d3b971c12a05a2f457", + "Archaeal-T4P_arCOG04679.search_hmm.out:md5,39e8d8a17bae2910d7aa599525dfb05b", + "Archaeal-T4P_arCOG04680.res_hmm_extract:md5,4dd4ceb67b3181932646ae745854cb04", + "Archaeal-T4P_arCOG04680.search_hmm.out:md5,a82d71cc6305aec70078caf95518ac68", + "Archaeal-T4P_arCOG05057.res_hmm_extract:md5,ac5c27f7948bac1de95f9a5de22908b3", + "Archaeal-T4P_arCOG05057.search_hmm.out:md5,93b63b889106f1b2c358bdff54f39d33", + "Archaeal-T4P_arCOG05119.res_hmm_extract:md5,bc16f951bcdb061bfd35e1c755c7c56f", + "Archaeal-T4P_arCOG05119.search_hmm.out:md5,302052e9d9f0a544bcfa60a0d77cfdf2", + "Archaeal-T4P_arCOG05166.res_hmm_extract:md5,7c6ecefa4dc554b3ebcaa538f2f37873", + "Archaeal-T4P_arCOG05166.search_hmm.out:md5,2fd87071a406d0fdbd258b6390b4f4b9", + "Archaeal-T4P_arCOG05458.res_hmm_extract:md5,ac228e4689fadbb4abdea23a170076c8", + "Archaeal-T4P_arCOG05458.search_hmm.out:md5,3f72eb3f93d24591ad6b8590d795125a", + "Archaeal-T4P_arCOG05608.res_hmm_extract:md5,ec5ba5828e0fea522bcb4b6808793445", + "Archaeal-T4P_arCOG05608.search_hmm.out:md5,1560de4c88f809322c1b4da16740c6e3", + "Archaeal-T4P_arCOG05609.res_hmm_extract:md5,247de3b9cab239639f09da722e30371c", + "Archaeal-T4P_arCOG05609.search_hmm.out:md5,7c19700ef5024819bc522b37b9d14683", + "Archaeal-T4P_arCOG05610.res_hmm_extract:md5,2279e6d0685d367cc5ee5a2fb8513632", + "Archaeal-T4P_arCOG05610.search_hmm.out:md5,da6e1a4d67561ad1dbe2926bcc6ed90b", + "Archaeal-T4P_arCOG05611.res_hmm_extract:md5,a7b70b3e7827a8837212abfe57692ee4", + "Archaeal-T4P_arCOG05611.search_hmm.out:md5,22017ff1c215e4c2ae4398d8da4d95ca", + "Archaeal-T4P_arCOG05612.res_hmm_extract:md5,bdb3b9144d143800c86ea13c89fd45c6", + "Archaeal-T4P_arCOG05612.search_hmm.out:md5,cbee7289ee2a8234d7b93752e5887d61", + "Archaeal-T4P_arCOG05613.res_hmm_extract:md5,3a594b7c5ea9fe91e861a33dd003b2e4", + "Archaeal-T4P_arCOG05613.search_hmm.out:md5,0f5085eee29839b862f405d88ae0b688", + "Archaeal-T4P_arCOG05614.res_hmm_extract:md5,040cc39072d73002adb559f2622e0384", + "Archaeal-T4P_arCOG05614.search_hmm.out:md5,0e6b11679d54f628c4fabe8d82a68b22", + "Archaeal-T4P_arCOG05615.res_hmm_extract:md5,dd7d2e78cdf3540e1865eaf6f47fad68", + "Archaeal-T4P_arCOG05615.search_hmm.out:md5,d1a412794af1f9d385431bbdd3cecbb3", + "Archaeal-T4P_arCOG05616.res_hmm_extract:md5,8db63ae2b55507a2f85fd4e309761467", + "Archaeal-T4P_arCOG05616.search_hmm.out:md5,d70dfc478a6fbb8017d3faa8d48abf20", + "Archaeal-T4P_arCOG05617.res_hmm_extract:md5,25997523be690c6e31aa89e7f89ebb1f", + "Archaeal-T4P_arCOG05617.search_hmm.out:md5,edcd772bce299ca237ee2959ba3845af", + "Archaeal-T4P_arCOG05618.res_hmm_extract:md5,08a01b5c42f0076ed3f2ccc1e811031c", + "Archaeal-T4P_arCOG05618.search_hmm.out:md5,b6f6ca851c33db4c080d586cce98a72e", + "Archaeal-T4P_arCOG05619.res_hmm_extract:md5,3a07b6ef56060a657494f9684f4779e7", + "Archaeal-T4P_arCOG05619.search_hmm.out:md5,02fc9527d09e7329891aab4aab7b7fce", + "Archaeal-T4P_arCOG05986.res_hmm_extract:md5,b0f81cba7aaa4c89590095a5a6b5a185", + "Archaeal-T4P_arCOG05986.search_hmm.out:md5,ed5281a3c1d40a273e9f9768ef797f83", + "Archaeal-T4P_arCOG05987.res_hmm_extract:md5,78b3165b6cad3d403b2f42ddb1e6c1c7", + "Archaeal-T4P_arCOG05987.search_hmm.out:md5,f77f2147d0e33a8ad96d742525307cdc", + "Archaeal-T4P_arCOG06117.res_hmm_extract:md5,281562a4fd26dd78b7b7a3a5f178ae78", + "Archaeal-T4P_arCOG06117.search_hmm.out:md5,0d9efa23ebe65c86959e57a8c4d1dc64", + "Archaeal-T4P_arCOG06291.res_hmm_extract:md5,bdc27e630d41387cbdd09f3ef1e1dbb1", + "Archaeal-T4P_arCOG06291.search_hmm.out:md5,8c43b70b99d5a7e3c1b7775e25c4761e", + "Archaeal-T4P_arCOG06296.res_hmm_extract:md5,9a99fd8496cb49a8c9ab4ef4da77ab7e", + "Archaeal-T4P_arCOG06296.search_hmm.out:md5,bd82701c6f54c14659c4f8c519c36cdc", + "Archaeal-T4P_arCOG06335.res_hmm_extract:md5,744cc128ee3410cf6bc245e9f95c04ce", + "Archaeal-T4P_arCOG06335.search_hmm.out:md5,526bea6603378f0e8251054df77e48ab", + "Archaeal-T4P_arCOG06517.res_hmm_extract:md5,e96023b1e1486d9230bb149dec082252", + "Archaeal-T4P_arCOG06517.search_hmm.out:md5,2e8957b3a2f6b9546891351992281102", + "Archaeal-T4P_arCOG06518.res_hmm_extract:md5,52a7cc1da7864c1f42a2e2e33047bca3", + "Archaeal-T4P_arCOG06518.search_hmm.out:md5,6c69f958213717f3318be663d37bd501", + "Archaeal-T4P_arCOG07206.res_hmm_extract:md5,8ec2e58301d9c85ae9f311a0380d9182", + "Archaeal-T4P_arCOG07206.search_hmm.out:md5,b34915b08480b25cac1d8111d7c18bbd", + "Archaeal-T4P_arCOG07276.res_hmm_extract:md5,df576553c9c5b5d5ae6a7622d3486d2d", + "Archaeal-T4P_arCOG07276.search_hmm.out:md5,e454070b3aeefa179bc2f7edff7e5e16", + "Archaeal-T4P_arCOG07478.res_hmm_extract:md5,d1f673491589df75ead4e44ac37b51df", + "Archaeal-T4P_arCOG07478.search_hmm.out:md5,780358e0101a8f59640b6d1aec9e878b", + "Archaeal-T4P_arCOG07564.res_hmm_extract:md5,dd9c0fcfb4e80877f1e968e2bdf701f8", + "Archaeal-T4P_arCOG07564.search_hmm.out:md5,4e06507e137f1263d0187c75e7f72dca", + "Archaeal-T4P_arCOG07777.res_hmm_extract:md5,27e590f99a51fab838c3a11ed6389ffa", + "Archaeal-T4P_arCOG07777.search_hmm.out:md5,5a9b8058a2e79c2205f22af266686696", + "Archaeal-T4P_arCOG08085.res_hmm_extract:md5,ec942b8a8f2a2322431f8b6662d4c9ba", + "Archaeal-T4P_arCOG08085.search_hmm.out:md5,0763771604c8412e6fcf31271211a68b", + "Archaeal-T4P_arCOG08521.res_hmm_extract:md5,67a56c65541ff268b6f6aa8082982899", + "Archaeal-T4P_arCOG08521.search_hmm.out:md5,a399ec61c8f5c8a43f6a4387815fa1c0", + "Archaeal-T4P_arCOG08522.res_hmm_extract:md5,1259b31c99de6253b27c8bb8835d4ac9", + "Archaeal-T4P_arCOG08522.search_hmm.out:md5,4d15e3ab25b1a77514fe8e729fd22e2a", + "Archaeal-T4P_arCOG08524.res_hmm_extract:md5,064dee65941e646bc18088f208b9a938", + "Archaeal-T4P_arCOG08524.search_hmm.out:md5,c503cd5758f0e4afbd8a5c91f7b4fc77", + "Archaeal-T4P_arCOG08836.res_hmm_extract:md5,c183a1f068447c82b41f221922cf188d", + "Archaeal-T4P_arCOG08836.search_hmm.out:md5,c9a68daeb22126869d52b23ec215918f", + "Archaeal-T4P_arCOG08837.res_hmm_extract:md5,d8984aa27f196921bd9a4bf334cdc964", + "Archaeal-T4P_arCOG08837.search_hmm.out:md5,5455bfe6932f971c7e97c1bb7304e5d9", + "Archaeal-T4P_arCOG09029.res_hmm_extract:md5,a878642c7a2a40402eed735da9b854d4", + "Archaeal-T4P_arCOG09029.search_hmm.out:md5,e0397b48166e5c2b1c1264a281bd553a", + "Archaeal-T4P_arCOG09150.res_hmm_extract:md5,f127e4eb4029138a7f093ed6de4fa379", + "Archaeal-T4P_arCOG09150.search_hmm.out:md5,315dc3ed0389d079239cf145a51e3827", + "Archaeal-T4P_arCOG10216.res_hmm_extract:md5,481fde71cb49ef64748538b3cdef889d", + "Archaeal-T4P_arCOG10216.search_hmm.out:md5,d97a9b3a91118f99f691cc7756c0ecf5", + "Archaeal-T4P_arCOG10426.res_hmm_extract:md5,fd949a0037d8f78e5cfd2f579722e2f0", + "Archaeal-T4P_arCOG10426.search_hmm.out:md5,b83a5337e41c31e4f13e754695cef310", + "Archaeal-T4P_arCOG11520.res_hmm_extract:md5,fca3fd0e65363c425f3d76b1995c873f", + "Archaeal-T4P_arCOG11520.search_hmm.out:md5,f0e6f83ea9b6621411c68928d5155c79", + "Archaeal-T4P_arCOG11939.res_hmm_extract:md5,265b00ef3f5dfb0378f1e6fcb4a8cd7a", + "Archaeal-T4P_arCOG11939.search_hmm.out:md5,5b095e51b50d918e79cdcba55b1987e4", + "ComM_comB.res_hmm_extract:md5,e2bce475b5705dd053f6f341ee321663", + "ComM_comB.search_hmm.out:md5,0816e67ae13e45ebe8ac5fb533a7e360", + "ComM_comC.res_hmm_extract:md5,ce819a57ed5024185ffeb494dbd4b83f", + "ComM_comC.search_hmm.out:md5,5a23a3d6350ae736a56707c5335b7f74", + "ComM_comEA.res_hmm_extract:md5,a7f6c65357e7ae503ae78524a9c1bb6a", + "ComM_comEA.search_hmm.out:md5,0086ba72ec3888fd97feaab9795291f0", + "ComM_comEB.res_hmm_extract:md5,75f93312573cd9fd66ad24b2d946f87f", + "ComM_comEB.search_hmm.out:md5,9cac2f0a3da94e0740223c8c963ed780", + "ComM_comEC.res_hmm_extract:md5,e3375d56cd4ebf816ea0a2008e18610e", + "ComM_comEC.search_hmm.out:md5,a4d71071ec235b8bd0470dcb25fc5dff", + "ComM_comFA.res_hmm_extract:md5,052ddff7dbbfab3666918456742c81be", + "ComM_comFA.search_hmm.out:md5,8b8400fb49bd0836e599076b67c97e5e", + "ComM_comFC.res_hmm_extract:md5,6d39c0202f3ebe3d3cbfbeebde290306", + "ComM_comFC.search_hmm.out:md5,d033017fa9946b135ea85c482464f7d8", + "ComM_comGA.res_hmm_extract:md5,c649834d69e0ed7e8bc55a6341a86713", + "ComM_comGA.search_hmm.out:md5,ad12bbe7b131177f5a756dff0d273d4b", + "ComM_comGB.res_hmm_extract:md5,7a790ba55ee4c21c6d21adc6448e4d46", + "ComM_comGB.search_hmm.out:md5,dc50f9e4e23503dbab305dff04a760ee", + "ComM_comGC.res_hmm_extract:md5,5beb73d3e94dbf45c3b784594203df3a", + "ComM_comGC.search_hmm.out:md5,3321232522e139877af89b85f7ee9786", + "ComM_comGD.res_hmm_extract:md5,ea3bdf2b4c2d4cd2cbe100497c0e27ff", + "ComM_comGD.search_hmm.out:md5,63a739ccadd2aaa6931d7e735b1c0269", + "ComM_comGE.res_hmm_extract:md5,7639e407e7774bdb5d29ec3ab5f6ad34", + "ComM_comGE.search_hmm.out:md5,51558385b4fa69e1a48d4b9181f20a07", + "ComM_comGF.res_hmm_extract:md5,35c1fbca80fb126522e59eb4c8e9c6d0", + "ComM_comGF.search_hmm.out:md5,0d2f3aef811ec8a7e143cfaa704fdcce", + "ComM_comGG.res_hmm_extract:md5,4f1d910de2c899b7a81f396f3d9108f2", + "ComM_comGG.search_hmm.out:md5,7e956637e9cd119801265c7fc1c386c1", + "ComM_comK.res_hmm_extract:md5,f637d13404abc7dd0ad085c46e79363f", + "ComM_comK.search_hmm.out:md5,7373dcb1917a1dc388c293a3ff6aa011", + "ComM_comX.res_hmm_extract:md5,c389ef37194d6c8b0fc0efffa0d7a27e", + "ComM_comX.search_hmm.out:md5,5abef9d50030bb50781a33bf957ab803", + "Flg_flgB.res_hmm_extract:md5,237803b2df7c1bd737c2eca35a1ed26e", + "Flg_flgB.search_hmm.out:md5,3a6172f2108acb963dd6c02f904e19c5", + "Flg_flgC.res_hmm_extract:md5,a2735fbc5628b146d83c70462bf89c3f", + "Flg_flgC.search_hmm.out:md5,1d05ee451677292fa6fa491b78169ba8", + "Flg_fliE.res_hmm_extract:md5,d3dd423658c0934808818b2dad2ea1ac", + "Flg_fliE.search_hmm.out:md5,8e3b14d312afa6243b42bc98034f8eca", + "Flg_sctJ_FLG.res_hmm_extract:md5,e3f43eae0c76e27c51c08e7dcab7818a", + "Flg_sctJ_FLG.search_hmm.out:md5,7d8aab6c9f73711ee2926563bf300093", + "Flg_sctN_FLG.res_hmm_extract:md5,652fbbce4950e221189a2ce0f8c3e69f", + "Flg_sctN_FLG.search_hmm.out:md5,a5f115022d0a87bceb6bdc42ed7af6ba", + "Flg_sctQ_FLG.res_hmm_extract:md5,a6b744bf761acdddcbd2e5cbd006b9bd", + "Flg_sctQ_FLG.search_hmm.out:md5,33c4bc057b8722afc89c53408956e984", + "Flg_sctR_FLG.res_hmm_extract:md5,9187c28a41535b2772f83a4ea8ec7bea", + "Flg_sctR_FLG.search_hmm.out:md5,b5c407cf09fda6c09d78734f4a0142d8", + "Flg_sctS_FLG.res_hmm_extract:md5,3b2271df2281ccd0edd6cd89a3be12e7", + "Flg_sctS_FLG.search_hmm.out:md5,33ddba758af23acc0db05048587e03e6", + "Flg_sctT_FLG.res_hmm_extract:md5,ef7ea1adad995e0967f8356c5738328b", + "Flg_sctT_FLG.search_hmm.out:md5,61d92177108257e59ca7c408618d5535", + "Flg_sctU_FLG.res_hmm_extract:md5,6f07780a09ab533ca7d3554d8bd1e29d", + "Flg_sctU_FLG.search_hmm.out:md5,77f8f3af93ddea6645f6bde1607f36ad", + "Flg_sctV_FLG.res_hmm_extract:md5,ed9280b8dddf5685768bd5b1e2c188e7", + "Flg_sctV_FLG.search_hmm.out:md5,daf0fb0cbee4894a1a7e2cbf4c3a257b", + "MSH_mshA.res_hmm_extract:md5,8cdf60057c01bda7a23a38a94504e957", + "MSH_mshA.search_hmm.out:md5,27736b8ebe4efc761993f04736d9dd6c", + "MSH_mshB.res_hmm_extract:md5,c51867d1d9aaf4e4d1f874deb46b311f", + "MSH_mshB.search_hmm.out:md5,3a53c6b353db6fd68d4dc6ad4cc52493", + "MSH_mshC.res_hmm_extract:md5,2c04e807f027b3c9ca316e8b4fbf6df6", + "MSH_mshC.search_hmm.out:md5,c98ebb13e166e04facc9bd0715942572", + "MSH_mshD.res_hmm_extract:md5,25c215acb5c8125a15ba94773f53447c", + "MSH_mshD.search_hmm.out:md5,ea01c3848b2f9439c5bacc267762c754", + "MSH_mshE.res_hmm_extract:md5,30c5ca6558446657e31b78378f2b7b6d", + "MSH_mshE.search_hmm.out:md5,b7d983d63c055b921e8ad444ad2a5dd9", + "MSH_mshF.res_hmm_extract:md5,d0b1795dd34a054307ad0f4bfe9ea3bc", + "MSH_mshF.search_hmm.out:md5,0eec17c331fed88c256c58ba4f436a0d", + "MSH_mshG.res_hmm_extract:md5,e24d5033ebe5a5c93aafff4b6240a45b", + "MSH_mshG.search_hmm.out:md5,005b1cae092ad13e1d1e3179d12da200", + "MSH_mshI.res_hmm_extract:md5,a10dcaeccc70ac5ea1e33b9dea0c080a", + "MSH_mshI.search_hmm.out:md5,064447593b2207f784871456d1399aaf", + "MSH_mshI2.res_hmm_extract:md5,df17dd557adeef90ee14692fb032685b", + "MSH_mshI2.search_hmm.out:md5,30cb74ec1dbada78671ad992a0746d98", + "MSH_mshJ.res_hmm_extract:md5,3deea588d68229bd2586b218a62d94e2", + "MSH_mshJ.search_hmm.out:md5,46a65b0703a50824a93904a61f763fd6", + "MSH_mshK.res_hmm_extract:md5,51bbfc582592f8dbf6829ae73c70d038", + "MSH_mshK.search_hmm.out:md5,b40ef7dc486bac60b2bf65f56adccdb2", + "MSH_mshL.res_hmm_extract:md5,12e70eda64f7aab86bd66bb43065111e", + "MSH_mshL.search_hmm.out:md5,5bcca8c11b95dd87c6e9394ccf1f79fe", + "MSH_mshM.res_hmm_extract:md5,7d66860b049070f80b9c0446fbd01953", + "MSH_mshM.search_hmm.out:md5,004b4949bca7067e8885e0f9c34f29f2", + "MSH_mshN.res_hmm_extract:md5,121608acc986c0d215217d616fd9b104", + "MSH_mshN.search_hmm.out:md5,ea3b675ff34304fa64e4f25edfc5452a", + "MSH_mshO.res_hmm_extract:md5,928b330576433d523e1e721b9fe03ee3", + "MSH_mshO.search_hmm.out:md5,ea6b40bac725bc62937c6bf07847b315", + "MSH_mshP.res_hmm_extract:md5,fb76de51218f671b27ea1dcad3dae493", + "MSH_mshP.search_hmm.out:md5,582780a403b8e2bc925e32722cf0135a", + "MSH_mshQ.res_hmm_extract:md5,5d0af3fa9d5d1e034955ff176100e7f7", + "MSH_mshQ.search_hmm.out:md5,be800e61f1fa78f4d3d0113e49d64203", + "T1SS_abc.res_hmm_extract:md5,462b5d531a8da6d08f01a876795b75a5", + "T1SS_abc.search_hmm.out:md5,658be7113760e15bee1d105ad39ab5ff", + "T1SS_mfp.res_hmm_extract:md5,6c5c427c07539f56fa5692eed9da12be", + "T1SS_mfp.search_hmm.out:md5,512e6199ba6156ed8e0774a6c512de2c", + "T1SS_omf.res_hmm_extract:md5,184a3948b7b78e9ec42e6617103896d7", + "T1SS_omf.search_hmm.out:md5,b256cf0a882df1a9427b3c8fbd418228", + "T2SS_gspC.res_hmm_extract:md5,7add94d1b1f45405b55ed4630cc8f1fb", + "T2SS_gspC.search_hmm.out:md5,10d56be7153aab76fa05afea53f38ce4", + "T2SS_gspD.res_hmm_extract:md5,b1b37dc8ac1dbea8fd375b0e1ec268bd", + "T2SS_gspD.search_hmm.out:md5,8c0179a60f3e5de17d8b1d0a59745bff", + "T2SS_gspE.res_hmm_extract:md5,96896a0294b05cf20a0ecc4868da7c42", + "T2SS_gspE.search_hmm.out:md5,554e0c7b328a2d3ab3e17d166f578aee", + "T2SS_gspF.res_hmm_extract:md5,b0957439916f7f35ed7d0b4c76f2cb58", + "T2SS_gspF.search_hmm.out:md5,934955700ba5dd45d1615cf040960de1", + "T2SS_gspG.res_hmm_extract:md5,abb00e027b3839ac7104ebb3a93b06b4", + "T2SS_gspG.search_hmm.out:md5,0ab405d50c58bd4d673abb9fb052903e", + "T2SS_gspH.res_hmm_extract:md5,b3163bf41a8f0c67afcf96d35936edcd", + "T2SS_gspH.search_hmm.out:md5,77ea6bc2c5fdee081c926e8fc26cb85f", + "T2SS_gspI.res_hmm_extract:md5,59ed63a66c03ad0b603236c65f340a95", + "T2SS_gspI.search_hmm.out:md5,54702b86a8eddfdc56dec4deff01fa40", + "T2SS_gspJ.res_hmm_extract:md5,81808092a7e6c19f2d17ed65c19f850a", + "T2SS_gspJ.search_hmm.out:md5,2365dea5cd5605f64507658cc2fd5f1b", + "T2SS_gspK.res_hmm_extract:md5,19509de3cf274c87d144852da65e3052", + "T2SS_gspK.search_hmm.out:md5,84d14223a07481ca3aa75e1f38525606", + "T2SS_gspL.res_hmm_extract:md5,8204b284e703b6bf48b334bf9d0c48f4", + "T2SS_gspL.search_hmm.out:md5,266a4873d39301dfb478a95440cd0db9", + "T2SS_gspM.res_hmm_extract:md5,d54720de67c1838f48b445b932e4e3ee", + "T2SS_gspM.search_hmm.out:md5,25c50205d3b33519c97e6ef19b4ee85c", + "T2SS_gspN.res_hmm_extract:md5,2a268bc24a51504952be757171f482e8", + "T2SS_gspN.search_hmm.out:md5,77063c8f5463a763427a472cdebb4d78", + "T2SS_gspO.res_hmm_extract:md5,f02bfc220b84198bcf084774abc5eb50", + "T2SS_gspO.search_hmm.out:md5,a9dd5612188a1f7fb602e5670a01a447", + "T3SS_sctC.res_hmm_extract:md5,acb84bb0f7b5a38236c64d9e0a75a2b8", + "T3SS_sctC.search_hmm.out:md5,0fb020877df6fc9a2ad93eaed83e88b4", + "T3SS_sctJ.res_hmm_extract:md5,4db29a1af87a3b04349fcaf0466e16fe", + "T3SS_sctJ.search_hmm.out:md5,f70750b4a2ebb95d1d441a2f1fed78b7", + "T3SS_sctN.res_hmm_extract:md5,479ca11796974fccd5d0a2f76abde5a1", + "T3SS_sctN.search_hmm.out:md5,b3dc7f42309b13c90c24e035dd359e3c", + "T3SS_sctQ.res_hmm_extract:md5,5ab1769dde5229e4bac1e03cbe5b1b43", + "T3SS_sctQ.search_hmm.out:md5,34f9bc2ec702e1ba20d5b5b03e092e39", + "T3SS_sctR.res_hmm_extract:md5,aac7f82089b1d4d80db7af71e8a722f2", + "T3SS_sctR.search_hmm.out:md5,982227d7e7e08b1f007014ea4cb49711", + "T3SS_sctS.res_hmm_extract:md5,d2ba91b2250fdfa05fe3403f96c5363f", + "T3SS_sctS.search_hmm.out:md5,2a9cc64641c21f6b644c032f8d2e3023", + "T3SS_sctT.res_hmm_extract:md5,7e57f8cb95e004f8b5922b27c6aeabe2", + "T3SS_sctT.search_hmm.out:md5,e08b19755ebd8c28caf1edd531db7870", + "T3SS_sctU.res_hmm_extract:md5,e852f58f7e09c3c221243db95312f7d6", + "T3SS_sctU.search_hmm.out:md5,d26e861d7ca269b2ad06d69b7adf4667", + "T3SS_sctV.res_hmm_extract:md5,39c761a7ae3c15ed02ae9180f6e8e836", + "T3SS_sctV.search_hmm.out:md5,58fff610c51dec4dad92eee5b1e75969", + "T4SS_I_traE.res_hmm_extract:md5,76b02f9d9b6074624f9457c58859dff8", + "T4SS_I_traE.search_hmm.out:md5,551a8a11bf213777d45dec0e40325616", + "T4SS_I_traI.res_hmm_extract:md5,8faa1d231a57095948ee36f9d6c9537a", + "T4SS_I_traI.search_hmm.out:md5,260106915b1d4821d12fb6db9925de7f", + "T4SS_I_traK.res_hmm_extract:md5,2119b823616b54fb8f15b0a939e84381", + "T4SS_I_traK.search_hmm.out:md5,067c2c616883b54f0e38190d1dfe5deb", + "T4SS_I_traL.res_hmm_extract:md5,788d8cf1fe39d60dfe123181fd5d5b15", + "T4SS_I_traL.search_hmm.out:md5,449626d3fdb499d1f2462f730a0fcf6e", + "T4SS_I_traM.res_hmm_extract:md5,a9bd9e1c0e11151fb4486ab355658179", + "T4SS_I_traM.search_hmm.out:md5,ce76dd5764ed263f8015abecd9780399", + "T4SS_I_traN.res_hmm_extract:md5,7b808cf767a0d39e7b6dcd6bf5bafe3b", + "T4SS_I_traN.search_hmm.out:md5,30c5efdf1a525b7c41aae487c36e9764", + "T4SS_I_traO.res_hmm_extract:md5,4aeaf3ca95dd3f32c6e6705e0beedf99", + "T4SS_I_traO.search_hmm.out:md5,a04e1c07f4683ae3dcc20500a769a041", + "T4SS_I_traP.res_hmm_extract:md5,29ba1b9f61471d55043ae14472f9b76a", + "T4SS_I_traP.search_hmm.out:md5,64cf4a1e2d0b33a569949c459569afe1", + "T4SS_I_traQ.res_hmm_extract:md5,c84cd4d6204c971652445492dc73a070", + "T4SS_I_traQ.search_hmm.out:md5,cca45e90db67e7a0c0ec03c9788a5c64", + "T4SS_I_traR.res_hmm_extract:md5,a8ba195b68ce57a7479512da7a8fee6d", + "T4SS_I_traR.search_hmm.out:md5,c695804ba69cffd08d2c67179d8cbbf5", + "T4SS_I_traT.res_hmm_extract:md5,b6340410427adfcf93785fe8b4548fc9", + "T4SS_I_traT.search_hmm.out:md5,3007cb67252bd0053a4d56d93fe62ee3", + "T4SS_I_traW.res_hmm_extract:md5,2988e74fae2838c6c872f00c94305f69", + "T4SS_I_traW.search_hmm.out:md5,de75dd6c7d93ffbde0bed98d30faaccc", + "T4SS_I_traY.res_hmm_extract:md5,c8b06ef741828ffa1f48890eef144c6a", + "T4SS_I_traY.search_hmm.out:md5,b69d1d1d1a290fc9bada482b859a9704", + "T4SS_I_trbA.res_hmm_extract:md5,a7ed77514fa982550897f6b15bbc9b50", + "T4SS_I_trbA.search_hmm.out:md5,efb7def10e8f7861272e80618cad6611", + "T4SS_I_trbB.res_hmm_extract:md5,19b7b9599da877ff80d1e5c702b075c0", + "T4SS_I_trbB.search_hmm.out:md5,78844160f2bcc70d1ea6427faf1eaafb", + "T4SS_MOBB.res_hmm_extract:md5,d174e46112f815c158f929df3629f11b", + "T4SS_MOBB.search_hmm.out:md5,cb2cf16a71410cc1f485e0cf0e658fe3", + "T4SS_T_virB1.res_hmm_extract:md5,7c6ff90d31865141a74d18971c0e22ec", + "T4SS_T_virB1.search_hmm.out:md5,8f03a9d7f303fd898ccb78e02ceb1858", + "T4SS_T_virB10.res_hmm_extract:md5,a93ba465e091a21f30748ba012f63434", + "T4SS_T_virB10.search_hmm.out:md5,0a0ad7da536eed0ebdae94dc9718d4cc", + "T4SS_T_virB11.res_hmm_extract:md5,2da5667ae1d267c7128534da0496e240", + "T4SS_T_virB11.search_hmm.out:md5,ebb39798b0dafa2c350e2e5d797a7541", + "T4SS_T_virB2.res_hmm_extract:md5,327b0ece02072e43a54f895da75e2911", + "T4SS_T_virB2.search_hmm.out:md5,536501fa7789a5af967f364a03e35ae2", + "T4SS_T_virB3.res_hmm_extract:md5,ae5dd75dc06bddf487d8db7f50875be9", + "T4SS_T_virB3.search_hmm.out:md5,c5df2e70563db4f57dd7c73f7e09d27f", + "T4SS_T_virB5.res_hmm_extract:md5,c59105cfd1302d4c058edd453b897822", + "T4SS_T_virB5.search_hmm.out:md5,fe5a6c091bd5ce6c69fb623ae6cad955", + "T4SS_T_virB6.res_hmm_extract:md5,2d30f10b659416588a3110581ab07170", + "T4SS_T_virB6.search_hmm.out:md5,2bb67c5856e3366702e51c523ba77e23", + "T4SS_T_virB8.res_hmm_extract:md5,ec86198137fe57b8cb286ba7df74f659", + "T4SS_T_virB8.search_hmm.out:md5,d350aed3c7550c52aebdce10c38193e2", + "T4SS_T_virB9.res_hmm_extract:md5,ec7a1bede17b0dab0842fda61f71b05d", + "T4SS_T_virB9.search_hmm.out:md5,5633ce65aeb7dd4a9048f1fbc3ee1fd6", + "T4SS_t4cp1.res_hmm_extract:md5,92fa7f346dfd600b061f6bb693e0392f", + "T4SS_t4cp1.search_hmm.out:md5,4b1b5821fa8a4eee14620769446e7fa2", + "T4SS_virb4.res_hmm_extract:md5,055a8f4cb752491e5aed80cb948649da", + "T4SS_virb4.search_hmm.out:md5,219bb1caaed28fd3f3367a5a809de6d6", + "T4aP_fimT.res_hmm_extract:md5,f1d05d2263de9cf3575ef97ca67e33b3", + "T4aP_fimT.search_hmm.out:md5,d8acacd7a7f6101c036291fd3ba7118c", + "T4aP_pilA.res_hmm_extract:md5,777a3f59ac7c05e248fbcb0ca7ca6d2e", + "T4aP_pilA.search_hmm.out:md5,66a1ac0107aea1999058dde7ab3fd56e", + "T4aP_pilB.res_hmm_extract:md5,6295c3b37484f745e338e56a6d359832", + "T4aP_pilB.search_hmm.out:md5,195dbcda4556ca907cf3a9b61c37cb6d", + "T4aP_pilC.res_hmm_extract:md5,6ec4bc6838dc72742b9784b7890ce846", + "T4aP_pilC.search_hmm.out:md5,b48bde0298df81b6179bf19395730c68", + "T4aP_pilD.res_hmm_extract:md5,8fde0b8f29b32946377c77cf57016c5d", + "T4aP_pilD.search_hmm.out:md5,80fc49c7dca8c00ed912928613ecde55", + "T4aP_pilE.res_hmm_extract:md5,fc7d4d68df01ea9b98675ae6732b7f2b", + "T4aP_pilE.search_hmm.out:md5,06ec862e2e3302f306b2b167df722d16", + "T4aP_pilM.res_hmm_extract:md5,43d32b05335f573db73e0e7ae5378dd4", + "T4aP_pilM.search_hmm.out:md5,6e232ab4eb269e07bda7daeb5f7c1e50", + "T4aP_pilN.res_hmm_extract:md5,9bc6431c9cb374d8d13b622006691e9c", + "T4aP_pilN.search_hmm.out:md5,d9da2d3a50e6b288a320d03a00bd491f", + "T4aP_pilO.res_hmm_extract:md5,209f1ccb9f2fed8a007230b67cff0bde", + "T4aP_pilO.search_hmm.out:md5,d8b47fa949d61cb495618a0a97c972f5", + "T4aP_pilP.res_hmm_extract:md5,bd16883fd31696acb954c2634a977c93", + "T4aP_pilP.search_hmm.out:md5,0027141c05d3739d0da30c1850053e1d", + "T4aP_pilQ.res_hmm_extract:md5,7bcbe6f36447a9be8f10bd4151ac7710", + "T4aP_pilQ.search_hmm.out:md5,fc34c6d6f2aeda485ad1e78f59c1aa99", + "T4aP_pilT.res_hmm_extract:md5,6d6289b3bdd4f6c73d23cda27a5d208d", + "T4aP_pilT.search_hmm.out:md5,32c3738435c9ba8e1b92401671a6065f", + "T4aP_pilU.res_hmm_extract:md5,926f2883123349964cea0df6c8d3443d", + "T4aP_pilU.search_hmm.out:md5,ab4f05e00eff3a6cb48937d5860d65d6", + "T4aP_pilV.res_hmm_extract:md5,4c6fa9f233ee8427453412272fbea6fe", + "T4aP_pilV.search_hmm.out:md5,c040080ff5f1b35b4ce84dea45d3e230", + "T4aP_pilW.res_hmm_extract:md5,51ad5d515cd37488e4b4683ccbf7d38d", + "T4aP_pilW.search_hmm.out:md5,bc2536cec99677ed68f5acfbf8de50ce", + "T4aP_pilX.res_hmm_extract:md5,75ad720a0847d28a402d30f327efaf7c", + "T4aP_pilX.search_hmm.out:md5,839b85dc6539ab36255acba06409126e", + "T4aP_pilY.res_hmm_extract:md5,d3ff147d7cc55b0f2a832e75d49c4817", + "T4aP_pilY.search_hmm.out:md5,cb274d4dbf8deab95cdc1e226a7eaa80", + "T4aP_pilZ.res_hmm_extract:md5,427f08bd2b01cedfe30e9f75d6a03a3f", + "T4aP_pilZ.search_hmm.out:md5,99411f21507658edd2f0c5cfaa08a3c3", + "T4bP_pilA.res_hmm_extract:md5,f4e220b4179146feef451520fe54bcd1", + "T4bP_pilA.search_hmm.out:md5,82c3f5e4131eea6848da50a451b3b482", + "T4bP_pilB.res_hmm_extract:md5,9e3e4af49c4e7891ff390b4397121c75", + "T4bP_pilB.search_hmm.out:md5,ecb89671f4c2825044ef7d9bc219a028", + "T4bP_pilC.res_hmm_extract:md5,435be571e27d34340d99510c4b0cb643", + "T4bP_pilC.search_hmm.out:md5,b78f831ff50027f6c5370143c61021da", + "T4bP_pilD.res_hmm_extract:md5,44469eaf990a33e145675802db2d5c01", + "T4bP_pilD.search_hmm.out:md5,9f8577dee87fc026505a5f628a90adb7", + "T4bP_pilE.res_hmm_extract:md5,6c286c7b59bf32aa4cb8f1b63429a922", + "T4bP_pilE.search_hmm.out:md5,0e74886df0c9eb5e96651f0bd203da90", + "T4bP_pilP.res_hmm_extract:md5,3a3fc807018af8aeb8a21ead73021760", + "T4bP_pilP.search_hmm.out:md5,73b2abedf8a731fc899ae6053b344f16", + "T4bP_pilQ.res_hmm_extract:md5,5fb75575e946f4ce750d55dd236e0716", + "T4bP_pilQ.search_hmm.out:md5,3ddad44975d6901b8a1a7be7f0bbf3ef", + "T4bP_pilT.res_hmm_extract:md5,28acaee83b02fec087e98957a82ac8d8", + "T4bP_pilT.search_hmm.out:md5,1e1aeb9ab8d83920f63094e976d32ab6", + "T5aSS_PF03797.res_hmm_extract:md5,89566d17da337e992c90005c2d8f0c3e", + "T5aSS_PF03797.search_hmm.out:md5,d376ac72e25ce18509bcdd6521bdec58", + "T5bSS_translocator.res_hmm_extract:md5,696d041ca1b3d6b3a82f3f3e8eb95e38", + "T5bSS_translocator.search_hmm.out:md5,d1b768b6bd25233e762174eed4055e93", + "T5cSS_PF03895.res_hmm_extract:md5,8667291c59329f1abb9e4ee80b717ece", + "T5cSS_PF03895.search_hmm.out:md5,37c01947a814202ac7819790fee5d60c", + "T6SSi_evpJ.res_hmm_extract:md5,c88c6f8d6e1fc4033294add2ffc19054", + "T6SSi_evpJ.search_hmm.out:md5,cf8f6fe4adfb04f19b3a124e5955fbfc", + "T6SSi_tssA.res_hmm_extract:md5,80db558c857e08eec4c75406eec8031b", + "T6SSi_tssA.search_hmm.out:md5,2b43b97a23b5a3f97f7a1b671af42ee2", + "T6SSi_tssB.res_hmm_extract:md5,a41b0f49721979a62bd6d724dd3ce0a0", + "T6SSi_tssB.search_hmm.out:md5,70fd73eb9c5e7c828e0f1eea0f94342d", + "T6SSi_tssC.res_hmm_extract:md5,28a90aef0fadabff39eba77fbf107511", + "T6SSi_tssC.search_hmm.out:md5,512e10069677f941d8c684a563130596", + "T6SSi_tssD.res_hmm_extract:md5,230df7de16fac79d35ba723e1ff7a0c4", + "T6SSi_tssD.search_hmm.out:md5,c9d31d335c6d25582d24ec3639335e02", + "T6SSi_tssE.res_hmm_extract:md5,9e61705bbbe124752ec8bdc534965999", + "T6SSi_tssE.search_hmm.out:md5,ff86e357487fbb2e6bbee267ebba8195", + "T6SSi_tssF.res_hmm_extract:md5,e50d87c22c06599628e9464fba69459c", + "T6SSi_tssF.search_hmm.out:md5,1028e6e248bb5191b20f7d0968ea3f37", + "T6SSi_tssG.res_hmm_extract:md5,9668c28f3611645b85b0db92ecedf0a3", + "T6SSi_tssG.search_hmm.out:md5,554a6a9978506f25d6378b07ac01d24b", + "T6SSi_tssH.res_hmm_extract:md5,86a3448e9e7e1f4bff06deb754ef5592", + "T6SSi_tssH.search_hmm.out:md5,212f447eb23a751696cd384d44853696", + "T6SSi_tssI.res_hmm_extract:md5,2810a6a8e48e8663d56684f52d1f4a69", + "T6SSi_tssI.search_hmm.out:md5,3ddb1bbd87a12ba47719ca8bd5a6d178", + "T6SSi_tssJ.res_hmm_extract:md5,d7699c0df136c12ca6af78acde4f3195", + "T6SSi_tssJ.search_hmm.out:md5,efbdf0fdc1d84f4c3ab79041aaad188e", + "T6SSi_tssK.res_hmm_extract:md5,e46de0bb694048aa86390f42c7e336ea", + "T6SSi_tssK.search_hmm.out:md5,53c3c2221d2a871d450ae353e8ca03c8", + "T6SSi_tssL.res_hmm_extract:md5,a83726c88dd43649531e116dace2b61c", + "T6SSi_tssL.search_hmm.out:md5,f896e39c458b9456d77381338643fc4d", + "T6SSi_tssM.res_hmm_extract:md5,59c2f8508abf3464b83b55c2f8a9e3b9", + "T6SSi_tssM.search_hmm.out:md5,a128c93185aa0d39cbc2b46aef63c5a1", + "T6SSii_dotU.res_hmm_extract:md5,b8c36fd7e1165c19fb778f681255d6fa", + "T6SSii_dotU.search_hmm.out:md5,cc5e1b1ff182accf6cd6b317a781114f", + "T6SSii_iglA.res_hmm_extract:md5,75fccf707db49f8b2265434eac7e88a0", + "T6SSii_iglA.search_hmm.out:md5,e9d2194bede2d72adbfa56466159ad2c", + "T6SSii_iglB.res_hmm_extract:md5,42b1ec1615db9871bb5504069d1a0368", + "T6SSii_iglB.search_hmm.out:md5,a8d9acaf36efff9994a92087e4c8a581", + "T6SSii_iglC.res_hmm_extract:md5,f4e63897bc48430eae34a5482e65b8c5", + "T6SSii_iglC.search_hmm.out:md5,ac0b9e2d175c50e94383a5a823ee3e47", + "T6SSii_iglD.res_hmm_extract:md5,425d7379b8df3fd4736313107fbfe3d6", + "T6SSii_iglD.search_hmm.out:md5,cf5eed35712e3d5025c88900e2fdeb5a", + "T6SSii_iglE.res_hmm_extract:md5,33375107b9abc09794dd3c965bdce8a7", + "T6SSii_iglE.search_hmm.out:md5,2b36e09e6658d216d326a7cd9f40e7e1", + "T6SSii_iglF.res_hmm_extract:md5,302aa9c5db2b77d1caf0ac761efa569d", + "T6SSii_iglF.search_hmm.out:md5,8a60db1e904aac335c0ee9a60fdc48ee", + "T6SSii_iglG.res_hmm_extract:md5,22771f69e684483e43fd60ad4603a06c", + "T6SSii_iglG.search_hmm.out:md5,cb189283f329f80119536feb11a1919f", + "T6SSii_iglH.res_hmm_extract:md5,df59cbd86cd91e455d8428ef52493530", + "T6SSii_iglH.search_hmm.out:md5,f6d275dc14e06ad8ac8ced099afc3a54", + "T6SSii_iglI.res_hmm_extract:md5,ea57a4ccf4e65fd121c643f3e6b889ce", + "T6SSii_iglI.search_hmm.out:md5,1d054eb46bd71b7be1ea5f8d03a6337e", + "T6SSii_iglJ.res_hmm_extract:md5,dd464dd13b1a6e065fc61aed892a3b49", + "T6SSii_iglJ.search_hmm.out:md5,8720568b02b6fc301365aa607fc58a9f", + "T6SSii_pdpA.res_hmm_extract:md5,49c970b420ff4d105607e0f713ecd8f0", + "T6SSii_pdpA.search_hmm.out:md5,cdf6a41535db4753d8b61e7b0bbe921a", + "T6SSii_pdpB.res_hmm_extract:md5,655935e16e6d400641bba10f20e999ef", + "T6SSii_pdpB.search_hmm.out:md5,4abcb030c8d228e4bb5e0f2033cc0ccd", + "T6SSii_pdpC.res_hmm_extract:md5,a63d3054d6b6ed3961517cbe5143494b", + "T6SSii_pdpC.search_hmm.out:md5,4f96b42eba256e7e1eb9ad09fe0a0de5", + "T6SSii_pdpD.res_hmm_extract:md5,f5c7f9a010c69ee2e51eb31ed9bb57e1", + "T6SSii_pdpD.search_hmm.out:md5,a05434d2c34de9573f0b581694c959f7", + "T6SSii_pdpE.res_hmm_extract:md5,64b3d775524f88f7d91f0f4ccf3b4b60", + "T6SSii_pdpE.search_hmm.out:md5,a70e29825f08ac4b7d2439dcf08775e2", + "T6SSii_vgrG.res_hmm_extract:md5,02dd667fa112a6be540a677f99636a6e", + "T6SSii_vgrG.search_hmm.out:md5,ea83f007014145787a95129ad2d396f2", + "T6SSiii_tssB.res_hmm_extract:md5,6e08b2de71359300352aaa714152eb19", + "T6SSiii_tssB.search_hmm.out:md5,4a386239a7514a09b725f45d9a1e25c4", + "T6SSiii_tssC.res_hmm_extract:md5,dc199f972fa30a61b484818f3f959919", + "T6SSiii_tssC.search_hmm.out:md5,5160a6bc863b8c5252f158f1563cdd1a", + "T6SSiii_tssD.res_hmm_extract:md5,64dabf727680658ea5e57b38a99272a7", + "T6SSiii_tssD.search_hmm.out:md5,5126aa495cd517464fe8f681df0873a6", + "T6SSiii_tssE.res_hmm_extract:md5,8e9b126dd88e946a80df8100c115b482", + "T6SSiii_tssE.search_hmm.out:md5,e1f55bd4be30b91b771e7da17d56aa50", + "T6SSiii_tssF.res_hmm_extract:md5,5f11f432fc8d23c44e51aceecadfdeff", + "T6SSiii_tssF.search_hmm.out:md5,49e812c3dc360729c8257cd9afe254bc", + "T6SSiii_tssG.res_hmm_extract:md5,9428f67ca4a3941dc7472c084834d038", + "T6SSiii_tssG.search_hmm.out:md5,12765a5eaf2693684572bb47a6f8bd16", + "T6SSiii_tssH.res_hmm_extract:md5,da9b45b99265d326d9cb1c915fb7ecbb", + "T6SSiii_tssH.search_hmm.out:md5,21979c47b4cdfc674b844f264ff5dc67", + "T6SSiii_tssI.res_hmm_extract:md5,7fdc8c0fbd119726f6a7af7dd5a692f9", + "T6SSiii_tssI.search_hmm.out:md5,8f65427802bc3b1f23d118156aba3fe6", + "T6SSiii_tssK.res_hmm_extract:md5,d26803063d67d4e5a6fac95b3ddfbdb9", + "T6SSiii_tssK.search_hmm.out:md5,4056875946a61ab9051a8672997e0e40", + "T6SSiii_tssN.res_hmm_extract:md5,36551f35bd3a8b4677241f89628df3e7", + "T6SSiii_tssN.search_hmm.out:md5,f9027fce7badfc36d920b5b280b084b3", + "T6SSiii_tssO.res_hmm_extract:md5,adc65541028c5d2aa0fbf69086f1ff73", + "T6SSiii_tssO.search_hmm.out:md5,9efb1603dbed5a4a25ffd30eeb060f10", + "T6SSiii_tssP.res_hmm_extract:md5,ee654bb2c074ca14867c9ac65edf9360", + "T6SSiii_tssP.search_hmm.out:md5,291a927a00c8ef0f98e21da252cc4776", + "T6SSiii_tssQ.res_hmm_extract:md5,5b22fdee0efe439d147cd8f920a6753c", + "T6SSiii_tssQ.search_hmm.out:md5,2759e802d1be216c4146cb64860e10c3", + "T6SSiii_tssR.res_hmm_extract:md5,e31da25536abce2e480cb4c88db72e22", + "T6SSiii_tssR.search_hmm.out:md5,e48ad954d55846715c5f157cb6762f47", + "T9SS_gldJ_TIGR03524.res_hmm_extract:md5,b84ab0cf11e8f1b1e63d087138221c6c", + "T9SS_gldJ_TIGR03524.search_hmm.out:md5,900c9b47c77263557e21299fb5394a32", + "T9SS_gldK_TIGR03525.res_hmm_extract:md5,361a178dbcaae6bf207611ec6d84c76e", + "T9SS_gldK_TIGR03525.search_hmm.out:md5,561bbd62b9b45c505265d9999dc1934d", + "T9SS_gldL_TIGR03513.res_hmm_extract:md5,9ef2e5d74b5ad9bf0e413d5a90ed7c04", + "T9SS_gldL_TIGR03513.search_hmm.out:md5,64e1c25ada96bf2a39133a712df633ec", + "T9SS_gldM_TIGR03517.res_hmm_extract:md5,d926052ea68524d388f3a9aff23eec82", + "T9SS_gldM_TIGR03517.search_hmm.out:md5,f0a4ce0418406559af357db4131b329d", + "T9SS_gldN_TIGR03523.res_hmm_extract:md5,523809edcddd1c39be1cb00b03733038", + "T9SS_gldN_TIGR03523.search_hmm.out:md5,e6487dc230cbb0d53c99152a220ebc43", + "T9SS_porQ.res_hmm_extract:md5,b6d5716dabdf33a535858e840a772121", + "T9SS_porQ.search_hmm.out:md5,6feeac9d1ee09d5923175b759d5b2733", + "T9SS_porU.res_hmm_extract:md5,dcd46e5bc61936adaf0b3d96ef12ed6f", + "T9SS_porU.search_hmm.out:md5,1b4357f63de736199da215f1c9d20486", + "T9SS_porV.res_hmm_extract:md5,b6fd0c06b09255a9529ed97f51f10c7a", + "T9SS_porV.search_hmm.out:md5,4daa87c4b1ad38e7517389c015fa049d", + "T9SS_sprA-2_PF12118.res_hmm_extract:md5,94802dcd9b4b1cd21652df15f75eb2ee", + "T9SS_sprA-2_PF12118.search_hmm.out:md5,447d0c74b78b80e6cb5e71dd41ee8eaf", + "T9SS_sprA-3_TIGR04189.res_hmm_extract:md5,e63cc6fa6645bbd2c02d1ccba75ac233", + "T9SS_sprA-3_TIGR04189.search_hmm.out:md5,eafc0d3b3af4467e8b8ea0f98b7a5ea2", + "T9SS_sprA_PF14349.res_hmm_extract:md5,63d7bebf48708f822fd4e461f63df352", + "T9SS_sprA_PF14349.search_hmm.out:md5,5fe4dc9fd8be59e7c9457760074dfd34", + "T9SS_sprE.res_hmm_extract:md5,009496d8536f40e7c4467a7ea31388dc", + "T9SS_sprE.search_hmm.out:md5,b15e4d07391d0f9af2820f2a78a1aa3a", + "T9SS_sprT.res_hmm_extract:md5,884c25d69d7c333e1e174cee11165a20", + "T9SS_sprT.search_hmm.out:md5,b4b7afa8ead831a320d39ccdc0e5fd08", + "Tad_flp.res_hmm_extract:md5,fdfef9516142fa56b4d57f72dde8e7fa", + "Tad_flp.search_hmm.out:md5,246b618a5571771584214cf86ab12e1c", + "Tad_rcpA.res_hmm_extract:md5,5c552bda8122268190093c00254b18b9", + "Tad_rcpA.search_hmm.out:md5,e2ff0016a8096cf782eda07b95dd4469", + "Tad_rcpB.res_hmm_extract:md5,2f3f4368130ceb04d40780b51216f220", + "Tad_rcpB.search_hmm.out:md5,e106982ed700a581e044b4610dfdba42", + "Tad_rcpC.res_hmm_extract:md5,2d439f356bbb9567dc8b8beb103363ec", + "Tad_rcpC.search_hmm.out:md5,84fad6484facada11c53df9ec2b4b4f7", + "Tad_tadA.res_hmm_extract:md5,678a2e2966385b0c0ba1104965242f8d", + "Tad_tadA.search_hmm.out:md5,1260288dcf7bb7bcbc3ae2d614870a9b", + "Tad_tadB.res_hmm_extract:md5,6632f3c16b85fd1bf1bcfc8cf335f325", + "Tad_tadB.search_hmm.out:md5,00bfa34767abfe5664347e0c7167c3af", + "Tad_tadC.res_hmm_extract:md5,f03360cd0dcfde30f8b5316328811fd8", + "Tad_tadC.search_hmm.out:md5,fd1a57b05bd23f494dc387a5c5704d95", + "Tad_tadD.res_hmm_extract:md5,7794f3cd5c058569f99666d339d49542", + "Tad_tadD.search_hmm.out:md5,9686fc8c6dafc886cf6b551ef2bf55c4", + "Tad_tadE.res_hmm_extract:md5,0e61f3f0e01244f711d36b79c52b7598", + "Tad_tadE.search_hmm.out:md5,460016b1bae942bf3473a31ce07484fb", + "Tad_tadF.res_hmm_extract:md5,a878447b96e96563ac1a8ee2f2a272e6", + "Tad_tadF.search_hmm.out:md5,8c90dae2153cfede655778ce688fe44d", + "Tad_tadG.res_hmm_extract:md5,751b28273bb078309f2f19e24339e46a", + "Tad_tadG.search_hmm.out:md5,885bcd0f4a9a0bdd95a6e47058de8b05", + "Tad_tadV.res_hmm_extract:md5,34bef92f323da28701ed1d6a225eac01", + "Tad_tadV.search_hmm.out:md5,8e74af9bbe3d20b9647eb2692fa84595", + "Tad_tadZ.res_hmm_extract:md5,9b3a26aabce5c5cc53fc010f158ebd08", + "Tad_tadZ.search_hmm.out:md5,4a45835732ed49879581c4679f1a9882" + ], + "macsyfinder.conf:md5,9985457a4928add0d424b08ad2a488d7", + "macsyfinder.log:md5,91b608a1bfe2977ff6769231ae3beb5e", + "macsyfinder.out:md5,bf6289cfd57d74acd1a28af9883d8869", + "uncomplete_systems.txt:md5,f70e33dac22def232009f8160d8a1f68" + ] + ] + ], + "stderr": [ + + ], + "stdout": [ + [ + { + "id": "test" + }, + "macsyfinder.out:md5,bf6289cfd57d74acd1a28af9883d8869" + ] + ], + "summary": [ + [ + { + "id": "test" + }, + "all_systems.tsv:md5,3ed7f4c36c862524604191711581a2a1" + ] + ], + "versions_hmmer": [ + [ + "MACSYFINDER_SEARCH", + "hmmer", + "3.4" + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_SEARCH", + "macsyfinder", + "2.1.6" + ] + ] + }, + { + "versions_hmmer": [ + [ + "MACSYFINDER_SEARCH", + "hmmer", + "3.4" + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_SEARCH", + "macsyfinder", + "2.1.6" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2026-02-26T13:53:37.554036812" + }, + "macsyfinder_search - proteins - fasta - stub": { + "content": [ + { + "best_solutions": [ + [ + { + "id": "test" + }, + "all_best_solutions.txt:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ], + "results": [ + [ + { + "id": "test" + }, + [ + "all_best_solutions.txt:md5,d41d8cd98f00b204e9800998ecf8427e", + "all_systems.tsv:md5,d41d8cd98f00b204e9800998ecf8427e", + "macsyfinder.err:md5,d41d8cd98f00b204e9800998ecf8427e", + "macsyfinder.out:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ] + ], + "stderr": [ + [ + { + "id": "test" + }, + "macsyfinder.err:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ], + "stdout": [ + [ + { + "id": "test" + }, + "macsyfinder.out:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ], + "summary": [ + [ + { + "id": "test" + }, + "all_systems.tsv:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ], + "versions_hmmer": [ + [ + "MACSYFINDER_SEARCH", + "hmmer", + "3.4" + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_SEARCH", + "macsyfinder", + "2.1.6" + ] + ] + }, + { + "versions_hmmer": [ + [ + "MACSYFINDER_SEARCH", + "hmmer", + "3.4" + ] + ], + "versions_macsyfinder": [ + [ + "MACSYFINDER_SEARCH", + "macsyfinder", + "2.1.6" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2026-02-26T13:54:00.473696425" + } +} \ No newline at end of file diff --git a/modules/nf-core/macsyfinder/search/tests/nextflow.config b/modules/nf-core/macsyfinder/search/tests/nextflow.config new file mode 100644 index 00000000000..d805fb7ed47 --- /dev/null +++ b/modules/nf-core/macsyfinder/search/tests/nextflow.config @@ -0,0 +1,5 @@ +process { + withName: MACSYFINDER_SEARCH { + ext.args = '--db-type unordered' + } +}