CUT-RUN/genome.yml at main · niekwit/CUT-RUN · GitHub

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genome:
  hg19:
    - index_path: "/home/niek/Documents/references/bowtie2-index/hg19/bowtie2-hg19"
    - black_list_path: ""/home/niek/Documents/references/blacklists/Human/hg19/wgEncodeDukeMapabilityRegionsExcludable.bed""
    - genome_size: 2.7e9
  hg38:
    - index_path: "/home/niek/Documents/references/bowtie2-index/GRCh38.p13.genome-index/GRCh38.p13.genome-index"
    - black_list_path: ""/home/niek/Documents/references/blacklists/Human/hg38/hg38-blacklist.v2.bed""
    - genome_size: 2.7e9
  mm9:
    - index_path: "/home/niek/Documents/references/bowtie2-index/mouse/mm9/mm9.genome-index"
    - black_list_path: "/home/niek/Documents/references/blacklists/Mouse/mm9-blacklist.bed"
    - genome_size: 1.87e9
  mm10:
    - index_path: ""
    - black_list_path: ""
    - genome_size: 1.87e9