@@ -1239,10 +1239,8 @@ class UnifizeInputSpec(AFNICommandInputSpec):
12391239 exists = True ,
12401240 copyfile = False )
12411241 out_file = File (
1242- name_template = '%s_unif' ,
12431242 desc = 'output image file name' ,
1244- argstr = '-prefix %s' ,
1245- name_source = 'in_file' )
1243+ argstr = '-prefix %s' )
12461244 t2 = traits .Bool (
12471245 desc = 'Treat the input as if it were T2-weighted, rather than '
12481246 'T1-weighted. This processing is done simply by inverting '
@@ -1261,8 +1259,7 @@ class UnifizeInputSpec(AFNICommandInputSpec):
12611259 'proportionally if the dataset voxel size differs significantly '
12621260 'from 1 mm.' ,
12631261 argstr = '-Urad %s' )
1264- ssave = File (
1265- name_template = '%s_scale' ,
1262+ scale_file = File (
12661263 desc = 'output file name to save the scale factor used at each voxel ' ,
12671264 argstr = '-ssave %s' )
12681265 no_duplo = traits .Bool (
@@ -1282,8 +1279,8 @@ class UnifizeInputSpec(AFNICommandInputSpec):
12821279
12831280
12841281class UnifizeOutputSpec (TraitedSpec ):
1285- out_file = File (desc = 'unifized file' ,
1286- exists = True )
1282+ scale_file = File (desc = 'scale factor file' )
1283+ out_file = File ( desc = 'unifized file' , exists = True )
12871284
12881285
12891286class Unifize (AFNICommand ):
@@ -1307,11 +1304,6 @@ class Unifize(AFNICommand):
13071304 * Want to correct EPI datasets for nonuniformity?
13081305 You can try the new and experimental [Mar 2017] '-EPI' option.
13091306
1310- * Method: Obi-Wan's personal variant of Ziad's sneaky trick.
1311- (If you want to know what his trick is, you'll have to ask him, or
1312- read Obi-Wan's source code [which is a world of ecstasy and exaltation],
1313- or just read all the way to the end of this help output.)
1314-
13151307 * The principal motive for this program is for use in an image
13161308 registration script, and it may or may not be useful otherwise.
13171309
@@ -1320,7 +1312,7 @@ class Unifize(AFNICommand):
13201312 (In other words, we do not recommend the use of 3dUniformize.)
13211313
13221314 For complete details, see the `3dUnifize Documentation.
1323- <https://afni.nimh.nih.gov/pub../pub /dist/doc/program_help/3dUnifize.html>`_
1315+ <https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dUnifize.html>`_
13241316
13251317 Examples
13261318 ========
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