After running scripts/run_benchmark/run_full_seqeracloud.sh and new results were created (e.g. s3://openproblems-data/resources/task_cyto_batch_integration/results/run_2025-03-12_11-23-51), I currently do the following steps to preview the results:
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git clone openproblems-bio/openproblems and openproblems-bio/website
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In the website repo, switch to the add-cyto-batch branch
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In the openproblems repo, edit the src/reporting/process_task_results/run_test.sh script such that the for loop is set to for TASK in "task_cyto_batch_integration"; do
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Run src/reporting/process_task_results/run_test.sh
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Commit the changes to the website to get it to preview the results
However, I need to create a simple script / workflow that anybody can just run to get a local preview.
After running
scripts/run_benchmark/run_full_seqeracloud.shand new results were created (e.g.s3://openproblems-data/resources/task_cyto_batch_integration/results/run_2025-03-12_11-23-51), I currently do the following steps to preview the results:git clone openproblems-bio/openproblems and openproblems-bio/website
In the website repo, switch to the
add-cyto-batchbranchIn the openproblems repo, edit the
src/reporting/process_task_results/run_test.shscript such that the for loop is set tofor TASK in "task_cyto_batch_integration"; doRun
src/reporting/process_task_results/run_test.shCommit the changes to the website to get it to preview the results
However, I need to create a simple script / workflow that anybody can just run to get a local preview.