AssertionError: assert t >= min_time

[hanyou271]

I'm trying to run parallel_singer on my data. Below is the error message I received.
Would you please take a look? Thanks a lot.

My commands

in_vcf_path="../vcf/33_rats/06_s300/33_rats_mRatBN7.2_chr19_qual30_bsnp_rmm_rmh_mafgl0_s300"
out_vcf_path="./chr19_s300/chr19_s300"
./singer-0.1.8-beta-linux-x86_64/parallel_singer -Ne 1e4 -m 1.2e-8 -vcf $in_vcf_path -output $out_vcf_path -n 33 -thin 300

Error message

Processing segment 0
Processing segment 1
Traceback (most recent call last):
File "/mnt/c/hanyou_c/projects/2024-02-21_ancestral_haplotypes_3/singer/singer-0.1.8-beta-linux-x86_64/convert_long_ARG.py", line 118, in
main()
File "/mnt/c/hanyou_c/projects/2024-02-21_ancestral_haplotypes_3/singer/singer-0.1.8-beta-linux-x86_64/convert_long_ARG.py", line 114, in main
ts = read_long_ARG(node_files, branch_files, mutation_files, block_coordinates)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/mnt/c/hanyou_c/projects/2024-02-21_ancestral_haplotypes_3/singer/singer-0.1.8-beta-linux-x86_64/convert_long_ARG.py", line 33, in read_long_ARG
assert t >= min_time
^^^^^^^^^^^^^^^^^^^^
AssertionError
Processing segment 0
Processing segment 1
Traceback (most recent call last):
File "/mnt/c/hanyou_c/projects/2024-02-21_ancestral_haplotypes_3/singer/singer-0.1.8-beta-linux-x86_64/convert_long_ARG.py", line 118, in
main()
File "/mnt/c/hanyou_c/projects/2024-02-21_ancestral_haplotypes_3/singer/singer-0.1.8-beta-linux-x86_64/convert_long_ARG.py", line 114, in main
ts = read_long_ARG(node_files, branch_files, mutation_files, block_coordinates)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/mnt/c/hanyou_c/projects/2024-02-21_ancestral_haplotypes_3/singer/singer-0.1.8-beta-linux-x86_64/convert_long_ARG.py", line 33, in read_long_ARG
assert t >= min_time
^^^^^^^^^^^^^^^^^^^^
AssertionError

[hanyou271]

Here is my input file.

33_rats_mRatBN7.2_chr19_qual30_bsnp_rmm_rmh_mafgl0_s300.txt

[rosiezhong]

Hi I'm experiencing the same issue! Any suggestions? @YunDeng98