Reference structure included in output even when option to suppress is used

[dww100]

If I run the command:

shape-it -r mol1.sdf -d mol2.sdf -o mol1-ref-out.sdf -s mol1-ref-score.txt --noRef

The stdout suggest the option to suppress the reference in the output sdf is recognised:

  -> Output reference   no

But the reference structure is included and the scores are not mol1-ref-out.sdf.

Note: This only happens when compiled with RDKit, if I use OpenBabel this options works as expected.