From e1d76b49e4df22844ce12619f26ecee2fa4ccbfd Mon Sep 17 00:00:00 2001 From: Alex Knoll <37813606+knoll-alex@users.noreply.github.com> Date: Sun, 27 Oct 2019 22:32:20 -0400 Subject: [PATCH 01/34] Updated LORIS pres --- LORIS_indepth.html | 813 ++++++++++++++++++++------------------------- 1 file changed, 363 insertions(+), 450 deletions(-) diff --git a/LORIS_indepth.html b/LORIS_indepth.html index aeecf07..2eeb8ed 100755 --- a/LORIS_indepth.html +++ b/LORIS_indepth.html @@ -33,74 +33,15 @@
- - Longitudinal Acquisition, Storage and Curation, - Interoperability, Reproducibility, Transfer, Anonymization, - Security, Privacy, Ethics, APIs, - Validation, Quality Control, Protocol Checking, - Preprocessing, Analysis, HPC, - Provenance, Ontological Standarization, Data Harmonization, - Upgrades, Maintenance, Bug Fixes, - User Interface, Javascript, Bootstrap, - Tracking, Extensibility, - Data Management, Summary Statistics, - Workflows, Development, Tool Integration, - Data Sharing, Download, Multi-Modal Linking, Querying, - Image Processing, Visualization, - Networking, System Administration, - Partnerships, Funding, HR - ...No big deal! -
-Benefits vs Challenges
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Heterogenous data acquisition@@ -138,72 +67,21 @@Heterogenous data acquisitionStorage, processing & dissemination |
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+ A flexible, customizable, and open source neuroimaging
database suitable for multiple types of projects.
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1. Acquisition & Storage
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Imaging Browser, BrainBrowser -3. Quality Control:
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- “We’re doing a really shitty job." -- Guy Rouleau - |
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+ High-Level Walkthrough of LORIS
+...follow along!
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+ Scroll down to see more key features of LORIS
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1. Acquisition & Storage
+2. Visualisation:Imaging Browser, BrainBrowser
+3. Quality Control: Radiological Review Module,DCC MRI
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Easier Installation
-DQT integration and improvements
-API for imaging
-Imaging Browser Enhancements
-Documentation - help sections, wikis, code!
-Automated Testing
-Genomics
-QC modules
-Better stats
-Reduce rependencies - i.e. Quickforms
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https://github.com/aces/Loris
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LORIS is used across the globe
+Scroll down to discover studies that use LORIS
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LORIS is just one part of the MNI Ecosystem
contributing to Open Science
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+ Longitudinal Acquisition, Storage and Curation, Interoperability, Reproducibility, Transfer, Anonymization, Security, Privacy, Ethics, APIs, + Validation, Quality Control, Protocol Checking, Preprocessing, Analysis, HPC, Provenance, Ontological Standarization, Data Harmonization, Upgrades, Maintenance, Bug Fixes, User Interface, Javascript, Bootstrap, Tracking, Extensibility, Data Management, Summary Statistics, Workflows, Development, Tool Integration, Data Sharing, Download, Multi-Modal Linking, Querying, Image Processing, Visualization, Networking, System Administration, Partnerships, Funding, HR ...No big deal! +
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+ Benefits vs Challenges
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+ Dedicated developer! (software is free of charge)
LINUX based server
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LORIS is freely available on GitHub - fully Open Source
https://github.com/aces/Loris
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LORIS is used across the globe
-Scroll down to discover studies that use LORIS
+Discover studies that use LORIS below
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Dedicated developer! (software is free of charge)
LINUX based server
LAMP stack
Perl and other peripheral libraries (i.e DCMTK)
-Beer for Samir
Proper resourcing
Reaslitic roadmap
Create use cases
Regular discussions
-Beer for Samir
Website: www.loris.ca
-Demo: https://demo.loris.ca
-LORIS developers mailing list: loris-dev@bic.mni.mcgill.ca
-Source code: https://github.com/aces/Loris
+Website:
www.loris.ca
Demo:
https://demo.loris.ca
LORIS developers mailing list:
loris-dev@bic.mni.mcgill.ca
Source code:
https://github.com/aces/Loris
"You don't understand... LORIS saved our lives ... We could share our data anywhere. LORIS makes it really hard to share incorrect data. The quality control data is right there. You can share the QC... it's so well QCed" -- Angelina Paolozza (NeuroDevenet, 2015)
+"You don't understand... LORIS saved our lives ... We could share our data anywhere. LORIS makes it really hard to share incorrect data. The quality control data is right there. You can share the QC... it's so well QCed" -- Angelina Paolozza (NeuroDevenet, 2015)
Organize your data
Enable Quality Control
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Download data from one place
Centralized Document Repoistory
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Public Data Repositories
Collaborative Data releases
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