Separate out conversion/annotation targets in top level makefile.

[vext01]

We have targets like:

warmup_experiment/Makefile

Lines 93 to 105 in 6330fa2

	plot-dacapo-results:
	bin/csv_to_krun_json -u "`uname -a`" -v HotSpot -l Java dacapo.hotspot.results
	bin/mark_outliers_in_json -w ${WINDOW_SIZE} -t ${OUTLIER_THRESHOLD} dacapo.hotspot.json.bz2
	LD_LIBRARY_PATH=${R_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH} bin/mark_changepoints_in_json -s ${STEADY_STATE_EXPECTED} dacapo.hotspot_outliers_w${WINDOW_SIZE}.json.bz2
	bin/plot_krun_results --wallclock-only -w ${WINDOW_SIZE} -m -t --with-outliers -o dacapo.hotspot_${PLOTS_NO_CPTS} dacapo.hotspot_outliers_w${WINDOW_SIZE}.json.bz2
	bin/plot_krun_results --wallclock-only -w ${WINDOW_SIZE} -m -t --with-outliers --with-changepoints -o dacapo.hotspot_${PLOTS_WITH_CPTS} dacapo.hotspot_outliers_w${WINDOW_SIZE}_changepoints.json.bz2
	if [ -e dacapo.graal.results ]; then \
	bin/csv_to_krun_json -u "`uname -a`" -v Graal -l Java dacapo.graal.results && \
	bin/mark_outliers_in_json -w ${WINDOW_SIZE} -t ${OUTLIER_THRESHOLD} dacapo.graal.json.bz2 && \
	LD_LIBRARY_PATH=${R_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH} bin/mark_changepoints_in_json -s ${STEADY_STATE_EXPECTED} dacapo.graal_outliers_w${WINDOW_SIZE}.json.bz2 && \
	bin/plot_krun_results --wallclock-only -w ${WINDOW_SIZE} -m -t --with-outliers -o dacapo.graal_${PLOTS_NO_CPTS} dacapo.graal_outliers_w${WINDOW_SIZE}.json.bz2 && \
	bin/plot_krun_results --wallclock-only -w ${WINDOW_SIZE} -m -t --with-outliers --with-changepoints -o dacapo.graal_${PLOTS_WITH_CPTS} dacapo.graal_outliers_w${WINDOW_SIZE}_changepoints.json.bz2; \
	fi

Ideally each of the intermediate files would be its own target and dependencies could then be specified.

Note also that dacapo/octane targets assume the plotting targets have run and that the residual intermediate files are existing. These targets should use the dependencies introduced by the above step.