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environment.yml
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61 lines (51 loc) · 1.57 KB
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# ============================================================================
# Conda Environment Configuration (Optional - for Python expansion)
# ============================================================================
# This project is primarily R-based using the packages in install_packages.R
# This environment.yml is for optional Python components
# ============================================================================
# Usage:
# Create environment: conda env create -f environment.yml
# Activate environment: conda activate osi-analysis
# Deactivate: conda deactivate
# ============================================================================
name: osi-analysis
channels:
- conda-forge
- defaults
dependencies:
# R packages (if using conda for R)
- r-base>=4.2.0
- r-tidyverse>=1.3.0
- r-ggplot2>=3.3.0
- r-dplyr>=1.0.0
- r-caret>=6.0
- r-e1071>=1.7.0
- r-randomforest>=4.6.0
- r-rpart>=4.1.0
- r-rmarkdown>=2.0
# Python core
- python>=3.9
- pip>=22.0
# Data Science Stack
- pandas>=1.5.0
- numpy>=1.23.0
- scipy>=1.9.0
# Visualization
- matplotlib>=3.6.0
- seaborn>=0.12.0
- plotly>=5.11.0
# Machine Learning
- scikit-learn>=1.1.0
# Jupyter
- jupyter>=1.0.0
- ipykernel>=6.16.0
- notebook>=6.5.0
# Additional packages via pip
- pip:
- imbalanced-learn>=0.9.0
# ============================================================================
# Environment Variables (Optional)
# ============================================================================
# variables:
# R_LIBS_USER: $HOME/R/library