Skip to content

Commit d0cd405

Browse files
author
Thomas Girke
committed
Update site content and build
1 parent e7d48dd commit d0cd405

File tree

102 files changed

+893
-21860
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

102 files changed

+893
-21860
lines changed

public/404.html

Lines changed: 6 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<!doctype html>
22
<html lang="en" class="no-js">
3-
<head><script src="/livereload.js?mindelay=10&amp;v=2&amp;port=1313&amp;path=livereload" data-no-instant defer></script>
3+
<head>
44
<meta charset="utf-8">
55
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
66
<meta name="generator" content="Hugo 0.123.7"><META NAME="ROBOTS" CONTENT="NOINDEX, NOFOLLOW">
@@ -20,7 +20,7 @@
2020
<title>404 Page not found | systemPipe</title><meta property="og:title" content="404 Page not found" />
2121
<meta property="og:description" content="systemPipe Workflow Environment" />
2222
<meta property="og:type" content="website" />
23-
<meta property="og:url" content="http://localhost:1313/404.html" />
23+
<meta property="og:url" content="https://systempipe.org/404.html" />
2424

2525
<meta itemprop="name" content="404 Page not found">
2626
<meta itemprop="description" content="systemPipe Workflow Environment"><meta name="twitter:card" content="summary"/><meta name="twitter:title" content="404 Page not found"/>
@@ -30,8 +30,8 @@
3030

3131

3232

33-
34-
<link href="./scss/main.css" rel="stylesheet">
33+
<link rel="preload" href="./scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" as="style">
34+
<link href="./scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" rel="stylesheet" integrity="">
3535

3636

3737
<script
@@ -324,7 +324,8 @@ <h1 id="title">Not found</h1>
324324

325325

326326

327-
<script src="./js/main.js"></script>
327+
328+
<script src="./js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
328329

329330

330331

public/about/acknowledgement/index.html

Lines changed: 8 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<!doctype html>
22
<html lang="en" class="no-js">
3-
<head><script src="/livereload.js?mindelay=10&amp;v=2&amp;port=1313&amp;path=livereload" data-no-instant defer></script>
3+
<head>
44
<meta charset="utf-8">
55
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
66
<meta name="generator" content="Hugo 0.123.7"><META NAME="ROBOTS" CONTENT="NOINDEX, NOFOLLOW">
@@ -20,7 +20,7 @@
2020
<title>Acknowledgement | systemPipe</title><meta property="og:title" content="Acknowledgement" />
2121
<meta property="og:description" content="Acknowledgement This project is funded by awards from the National Science Foundation (ABI-1661152{blk}), and the National Institute on Aging of the National Institutes of Health (U19AG023122{blk})." />
2222
<meta property="og:type" content="article" />
23-
<meta property="og:url" content="http://localhost:1313/about/acknowledgement/" /><meta property="article:section" content="about" />
23+
<meta property="og:url" content="https://systempipe.org/about/acknowledgement/" /><meta property="article:section" content="about" />
2424

2525
<meta property="article:modified_time" content="2026-02-01T19:47:05-08:00" />
2626

@@ -35,8 +35,8 @@
3535

3636

3737

38-
39-
<link href="../../scss/main.css" rel="stylesheet">
38+
<link rel="preload" href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" as="style">
39+
<link href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" rel="stylesheet" integrity="">
4040

4141

4242
<script
@@ -287,14 +287,14 @@
287287

288288

289289
<li class="breadcrumb-item" >
290-
<a href="http://localhost:1313/about/">About</a>
290+
<a href="https://systempipe.org/about/">About</a>
291291
</li>
292292

293293

294294

295295

296296
<li class="breadcrumb-item active" aria-current="page">
297-
<a href="http://localhost:1313/about/acknowledgement/">Acknowledgement</a>
297+
<a href="https://systempipe.org/about/acknowledgement/">Acknowledgement</a>
298298
</li>
299299

300300
</ol>
@@ -449,7 +449,8 @@ <h2 id="acknowledgement">Acknowledgement</h2>
449449

450450

451451

452-
<script src="../../js/main.js"></script>
452+
453+
<script src="../../js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
453454

454455

455456

public/about/contact/index.html

Lines changed: 8 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<!doctype html>
22
<html lang="en" class="no-js">
3-
<head><script src="/livereload.js?mindelay=10&amp;v=2&amp;port=1313&amp;path=livereload" data-no-instant defer></script>
3+
<head>
44
<meta charset="utf-8">
55
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
66
<meta name="generator" content="Hugo 0.123.7"><META NAME="ROBOTS" CONTENT="NOINDEX, NOFOLLOW">
@@ -21,7 +21,7 @@
2121
<meta property="og:description" content="Thomas Girke{blk}, Ph.D. Professor of Bioinformatics Director of HPC Center (HPCC{blk}) Institute for Integrative Genome Biology (IIGB{blk}) Department of Botany and Plant Sciences (BPSC{blk}) 1207F Genomics Building University of California, Riverside (UCR{blk}) CA 92521 Email: thomas.girke@ucr.edu
2222
Daniela Cassol{blk}, Ph.D. Postdoctoral Researcher Department of Botany and Plant Sciences (BPSC{blk}) 1207E Genomics Building University of California, Riverside (UCR{blk}) CA 92521 Email: danicassol@gmail.com" />
2323
<meta property="og:type" content="article" />
24-
<meta property="og:url" content="http://localhost:1313/about/contact/" /><meta property="article:section" content="about" />
24+
<meta property="og:url" content="https://systempipe.org/about/contact/" /><meta property="article:section" content="about" />
2525

2626
<meta property="article:modified_time" content="2025-12-07T11:36:14-08:00" />
2727

@@ -38,8 +38,8 @@
3838

3939

4040

41-
42-
<link href="../../scss/main.css" rel="stylesheet">
41+
<link rel="preload" href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" as="style">
42+
<link href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" rel="stylesheet" integrity="">
4343

4444

4545
<script
@@ -290,14 +290,14 @@
290290

291291

292292
<li class="breadcrumb-item" >
293-
<a href="http://localhost:1313/about/">About</a>
293+
<a href="https://systempipe.org/about/">About</a>
294294
</li>
295295

296296

297297

298298

299299
<li class="breadcrumb-item active" aria-current="page">
300-
<a href="http://localhost:1313/about/contact/">Contact</a>
300+
<a href="https://systempipe.org/about/contact/">Contact</a>
301301
</li>
302302

303303
</ol>
@@ -467,7 +467,8 @@ <h1>Contact</h1>
467467

468468

469469

470-
<script src="../../js/main.js"></script>
470+
471+
<script src="../../js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
471472

472473

473474

public/about/index.html

Lines changed: 7 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<!doctype html>
22
<html lang="en" class="no-js">
3-
<head><script src="/livereload.js?mindelay=10&amp;v=2&amp;port=1313&amp;path=livereload" data-no-instant defer></script>
3+
<head>
44
<meta charset="utf-8">
55
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
66
<meta name="generator" content="Hugo 0.123.7"><META NAME="ROBOTS" CONTENT="NOINDEX, NOFOLLOW">
@@ -20,7 +20,7 @@
2020
<title>About systemPipe Project | systemPipe</title><meta property="og:title" content="About systemPipe Project" />
2121
<meta property="og:description" content="systemPipe Workflow Environment" />
2222
<meta property="og:type" content="website" />
23-
<meta property="og:url" content="http://localhost:1313/about/" />
23+
<meta property="og:url" content="https://systempipe.org/about/" />
2424

2525
<meta itemprop="name" content="About systemPipe Project">
2626
<meta itemprop="description" content="systemPipe Workflow Environment"><meta name="twitter:card" content="summary"/><meta name="twitter:title" content="About systemPipe Project"/>
@@ -30,8 +30,8 @@
3030

3131

3232

33-
34-
<link href="../scss/main.css" rel="stylesheet">
33+
<link rel="preload" href="../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" as="style">
34+
<link href="../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" rel="stylesheet" integrity="">
3535

3636

3737
<script
@@ -279,7 +279,7 @@
279279

280280

281281
<li class="breadcrumb-item active" aria-current="page">
282-
<a href="http://localhost:1313/about/">About</a>
282+
<a href="https://systempipe.org/about/">About</a>
283283
</li>
284284

285285
</ol>
@@ -483,7 +483,8 @@ <h5>
483483

484484

485485

486-
<script src="../js/main.js"></script>
486+
487+
<script src="../js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
487488

488489

489490

public/about/project/index.html

Lines changed: 8 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<!doctype html>
22
<html lang="en" class="no-js">
3-
<head><script src="/livereload.js?mindelay=10&amp;v=2&amp;port=1313&amp;path=livereload" data-no-instant defer></script>
3+
<head>
44
<meta charset="utf-8">
55
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
66
<meta name="generator" content="Hugo 0.123.7"><META NAME="ROBOTS" CONTENT="NOINDEX, NOFOLLOW">
@@ -21,7 +21,7 @@
2121
<meta property="og:description" content="Overview The systemPipe project provides a suite of R/Bioconductor packages for designing, building, and executing end-to-end data analysis workflows on local machines and high-performance computing (HPC) systems, while simultaneously generating publication-quality analysis reports.
2222
This website serves primarily as a landing page that provides a high-level overview of each package and links to their corresponding pages on Bioconductor. Detailed usage instructions, examples, and technical documentation are available in the package vignettes hosted on Bioconductor (linked below)." />
2323
<meta property="og:type" content="article" />
24-
<meta property="og:url" content="http://localhost:1313/about/project/" /><meta property="article:section" content="about" />
24+
<meta property="og:url" content="https://systempipe.org/about/project/" /><meta property="article:section" content="about" />
2525

2626
<meta property="article:modified_time" content="2026-02-01T19:35:46-08:00" />
2727

@@ -38,8 +38,8 @@
3838

3939

4040

41-
42-
<link href="../../scss/main.css" rel="stylesheet">
41+
<link rel="preload" href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" as="style">
42+
<link href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" rel="stylesheet" integrity="">
4343

4444

4545
<script
@@ -305,14 +305,14 @@
305305

306306

307307
<li class="breadcrumb-item" >
308-
<a href="http://localhost:1313/about/">About</a>
308+
<a href="https://systempipe.org/about/">About</a>
309309
</li>
310310

311311

312312

313313

314314
<li class="breadcrumb-item active" aria-current="page">
315-
<a href="http://localhost:1313/about/project/">Project</a>
315+
<a href="https://systempipe.org/about/project/">Project</a>
316316
</li>
317317

318318
</ol>
@@ -543,7 +543,8 @@ <h2 id="workflow-templates">Workflow Templates</h2>
543543

544544

545545

546-
<script src="../../js/main.js"></script>
546+
547+
<script src="../../js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
547548

548549

549550

public/about/publications/index.html

Lines changed: 8 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<!doctype html>
22
<html lang="en" class="no-js">
3-
<head><script src="/livereload.js?mindelay=10&amp;v=2&amp;port=1313&amp;path=livereload" data-no-instant defer></script>
3+
<head>
44
<meta charset="utf-8">
55
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
66
<meta name="generator" content="Hugo 0.123.7"><META NAME="ROBOTS" CONTENT="NOINDEX, NOFOLLOW">
@@ -21,7 +21,7 @@
2121
<meta property="og:description" content="Publications of this project Journal publications Duan Y, Evans DS, Miller RA, Schork NJ, Cummings SR, Girke T. signatureSearch: environment for gene expression signature searching and functional interpretation. Nucleic Acids Res [Internet]. 2020 Dec 2;48(21):e124. Available from: http://dx.doi.org/10.1093/nar/gkaa878 PMCID: PMC7708038{blk}
2222
Lombard DB, Kohler WJ, Guo AH, Gendron C, Han M, Ding W, Lyu Y, Ching T-T, Wang F-Y, Chakraborty TS, Nikolovska-Coleska Z, Duan Y, Girke T, Hsu A-L, Pletcher SD, Miller RA." />
2323
<meta property="og:type" content="article" />
24-
<meta property="og:url" content="http://localhost:1313/about/publications/" /><meta property="article:section" content="about" />
24+
<meta property="og:url" content="https://systempipe.org/about/publications/" /><meta property="article:section" content="about" />
2525

2626
<meta property="article:modified_time" content="2025-12-07T11:36:14-08:00" />
2727

@@ -38,8 +38,8 @@
3838

3939

4040

41-
42-
<link href="../../scss/main.css" rel="stylesheet">
41+
<link rel="preload" href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" as="style">
42+
<link href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" rel="stylesheet" integrity="">
4343

4444

4545
<script
@@ -305,14 +305,14 @@
305305

306306

307307
<li class="breadcrumb-item" >
308-
<a href="http://localhost:1313/about/">About</a>
308+
<a href="https://systempipe.org/about/">About</a>
309309
</li>
310310

311311

312312

313313

314314
<li class="breadcrumb-item active" aria-current="page">
315-
<a href="http://localhost:1313/about/publications/">Publications</a>
315+
<a href="https://systempipe.org/about/publications/">Publications</a>
316316
</li>
317317

318318
</ol>
@@ -668,7 +668,8 @@ <h2 id="publications-related-to-this-project">Publications related to this proje
668668

669669

670670

671-
<script src="../../js/main.js"></script>
671+
672+
<script src="../../js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
672673

673674

674675

public/about/team/index.html

Lines changed: 8 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<!doctype html>
22
<html lang="en" class="no-js">
3-
<head><script src="/livereload.js?mindelay=10&amp;v=2&amp;port=1313&amp;path=livereload" data-no-instant defer></script>
3+
<head>
44
<meta charset="utf-8">
55
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
66
<meta name="generator" content="Hugo 0.123.7"><META NAME="ROBOTS" CONTENT="NOINDEX, NOFOLLOW">
@@ -23,7 +23,7 @@
2323
Le Zhang, Graduate Student in GGB
2424
Ponmathi Ramasamy, Undergraduate Student in Bioengineering" />
2525
<meta property="og:type" content="article" />
26-
<meta property="og:url" content="http://localhost:1313/about/team/" /><meta property="article:section" content="about" />
26+
<meta property="og:url" content="https://systempipe.org/about/team/" /><meta property="article:section" content="about" />
2727

2828
<meta property="article:modified_time" content="2025-12-07T11:36:14-08:00" />
2929

@@ -44,8 +44,8 @@
4444

4545

4646

47-
48-
<link href="../../scss/main.css" rel="stylesheet">
47+
<link rel="preload" href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" as="style">
48+
<link href="../../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" rel="stylesheet" integrity="">
4949

5050

5151
<script
@@ -307,14 +307,14 @@
307307

308308

309309
<li class="breadcrumb-item" >
310-
<a href="http://localhost:1313/about/">About</a>
310+
<a href="https://systempipe.org/about/">About</a>
311311
</li>
312312

313313

314314

315315

316316
<li class="breadcrumb-item active" aria-current="page">
317-
<a href="http://localhost:1313/about/team/">Team</a>
317+
<a href="https://systempipe.org/about/team/">Team</a>
318318
</li>
319319

320320
</ol>
@@ -478,7 +478,8 @@ <h2 id="current-members">Current Members</h2>
478478

479479

480480

481-
<script src="../../js/main.js"></script>
481+
482+
<script src="../../js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
482483

483484

484485

public/community/index.html

Lines changed: 6 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<!doctype html>
22
<html lang="en" class="no-js">
3-
<head><script src="/livereload.js?mindelay=10&amp;v=2&amp;port=1313&amp;path=livereload" data-no-instant defer></script>
3+
<head>
44
<meta charset="utf-8">
55
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
66
<meta name="generator" content="Hugo 0.123.7"><META NAME="ROBOTS" CONTENT="NOINDEX, NOFOLLOW">
@@ -20,7 +20,7 @@
2020
<title>Community | systemPipe</title><meta property="og:title" content="Community" />
2121
<meta property="og:description" content="systemPipe Workflow Environment" />
2222
<meta property="og:type" content="website" />
23-
<meta property="og:url" content="http://localhost:1313/community/" />
23+
<meta property="og:url" content="https://systempipe.org/community/" />
2424

2525
<meta itemprop="name" content="Community">
2626
<meta itemprop="description" content="systemPipe Workflow Environment"><meta name="twitter:card" content="summary"/><meta name="twitter:title" content="Community"/>
@@ -30,8 +30,8 @@
3030

3131

3232

33-
34-
<link href="../scss/main.css" rel="stylesheet">
33+
<link rel="preload" href="../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" as="style">
34+
<link href="../scss/main.min.2632ca806a74ced739b45e7001ee9dcd887d8c6053f398fc136b3e0b0da7be80.css" rel="stylesheet" integrity="">
3535

3636

3737
<script
@@ -369,7 +369,8 @@ <h2>Develop and Contribute</h2>
369369

370370

371371

372-
<script src="../js/main.js"></script>
372+
373+
<script src="../js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
373374

374375

375376

public/images/sp_org_links.svg

Lines changed: 1 addition & 1 deletion
Loading

0 commit comments

Comments
 (0)