refactor: Use git dependencies instead of local paths

- Remove local crates/* directory (using git deps instead)
- Update desktop/src-tauri/Cargo.toml to use git dependencies
- Fix regex version conflict with explicit dependency
- Update workspace to only include desktop/src-tauri
- Remove server crates from desktop repo

This allows terraphim-ai-desktop to be a standalone repository
while still using the latest code from terraphim-ai main branch.

Author: AlexMikhalev

Cargo.lock

@@ -1,9 +1,8 @@
 
 [workspace]
 resolver = "2"
-members = ["crates/*", "terraphim_server", "terraphim_firecracker", "desktop/src-tauri", "terraphim_ai_nodejs"]
-exclude = ["crates/terraphim_agent_application", "crates/terraphim_truthforge", "crates/terraphim_validation", "crates/terraphim_rlm", "crates/terraphim_automata_py"]  # Experimental crates (RLM feature-gated); automata_py is a PyO3 extension module -- build with `maturin develop` instead of cargo
-default-members = ["terraphim_server"]
+members = ["desktop/src-tauri"]
+default-members = ["desktop/src-tauri"]
 
 [workspace.package]
 version = "1.8.0"

Cargo.toml

@@ -23,17 +23,20 @@ path = "src/bin/generate-bindings.rs"
 tauri-build = { version = "1.5.5", features = [] }
 
 [dependencies]
-terraphim_automata = { path = "../../crates/terraphim_automata", version = "1.0.0", features = ["typescript"] }
-terraphim_atomic_client = { path = "../../crates/terraphim_atomic_client", version = "1.0.0", features = ["native"], optional = true }
-terraphim_config = { path = "../../crates/terraphim_config", version = "1.0.0", features = ["typescript"] }
-terraphim_middleware = { path = "../../crates/terraphim_middleware", version = "1.0.0" }
-terraphim_rolegraph = { path = "../../crates/terraphim_rolegraph", version = "1.0.0" }
-terraphim_settings = { path = "../../crates/terraphim_settings", version = "1.0.0", features = ["onepassword"] }
-terraphim_onepassword_cli = { path = "../../crates/terraphim_onepassword_cli", version = "1.0.0" }
-terraphim_types = { path = "../../crates/terraphim_types", version = "1.0.0", features = ["typescript"] }
-terraphim_persistence = { path = "../../crates/terraphim_persistence", version = "1.0.0" }
-terraphim_service = { path = "../../crates/terraphim_service", version = "1.0.0" }
-terraphim_mcp_server = { path = "../../crates/terraphim_mcp_server", version = "1.0.0" }
+# Force consistent regex version across all git dependencies
+regex = "^1.12.3"
+
+terraphim_automata = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main", features = ["typescript"] }
+terraphim_atomic_client = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main", features = ["native"], optional = true }
+terraphim_config = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main", features = ["typescript"] }
+terraphim_middleware = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main" }
+terraphim_rolegraph = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main" }
+terraphim_settings = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main", features = ["onepassword"] }
+terraphim_onepassword_cli = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main" }
+terraphim_types = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main", features = ["typescript"] }
+terraphim_persistence = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main" }
+terraphim_service = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main" }
+terraphim_mcp_server = { git = "https://github.com/terraphim/terraphim-ai.git", branch = "main" }
 rmcp = { version = "0.9.0", features = ["server"] }
 serde_json_any_key = "2.0.0"
 anyhow = "1.0.81"