Merge branch 'main' of https://github.com/theLongLab/CATE_viral_transmission into main

Author: DeshanPerera

.github/workflows/c-cpp.yml

@@ -11,24 +11,33 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v4
+    - name: Checkout Repository
+      uses: actions/checkout@v4
 
-    # Install CUDA
-    - name: Set up NVIDIA CUDA Toolkit
+    - name: Install libtinfo5 Manually
       run: |
+        sudo apt update
+        wget http://security.ubuntu.com/ubuntu/pool/universe/n/ncurses/libtinfo5_6.3-2ubuntu0.1_amd64.deb
+        sudo apt install -y ./libtinfo5_6.3-2ubuntu0.1_amd64.deb
+
+    - name: Install CUDA Toolkit 12.6
+      run: |
+        wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64/cuda-keyring_1.0-1_all.deb
+        sudo dpkg -i cuda-keyring_1.0-1_all.deb
         sudo apt-get update
-        sudo apt-get install -y software-properties-common
-        sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64/3bf863cc.pub
-        sudo sh -c 'echo "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64 /" > /etc/apt/sources.list.d/cuda.list'
-        sudo apt-get update
-        sudo apt-get install -y cuda-11-7
+        sudo apt-get install -y cuda-toolkit-12-6
 
-    # Add CUDA to PATH
     - name: Add CUDA to PATH
       run: |
-        echo "/usr/local/cuda-11.7/bin" >> $GITHUB_PATH
-        export PATH=/usr/local/cuda-11.7/bin:$PATH
+        echo "/usr/local/cuda-12.6/bin" >> $GITHUB_PATH
+        echo "/usr/local/cuda-12.6/lib64" >> $GITHUB_PATH
+        echo "LD_LIBRARY_PATH=/usr/local/cuda-12.6/lib64:$LD_LIBRARY_PATH" >> $GITHUB_ENV
+        export PATH=/usr/local/cuda-12.6/bin:$PATH
+
+    - name: Verify NVCC and GCC Installation
+      run: |
+        nvcc --version
+        gcc --version
 
-    # Compile using nvcc
-    - name: Compile
-      run: nvcc -std=c++17 *.cu *.cpp -o output_binary
+    - name: Compile CUDA Code
+      run: nvcc -std=c++17 *.cu *.cpp -o "CATE_test"