diff --git a/nextflow/amr-on-wb/modules/Microbiome/kraken2.nf b/nextflow/amr-on-wb/modules/Microbiome/kraken2.nf
index 3d581c2..e027a2c 100755
--- a/nextflow/amr-on-wb/modules/Microbiome/kraken2.nf
+++ b/nextflow/amr-on-wb/modules/Microbiome/kraken2.nf
@@ -103,37 +103,3 @@ process runbracken {
         """
 }
 
-process kronadb {
-    label "microbiome"
-    output:
-        file("krona_db/taxonomy.tab") optional true into krona_db_ch // is this a value ch?
-
-    when: 
-        !params.skip_krona
-        
-    script:
-    """
-    ktUpdateTaxonomy.sh krona_db
-    """
-}
-
-process kronafromkraken {
-    publishDir params.outdir, mode: 'copy'
-    label "microbiome"
-    input:
-        file(x) from kraken2krona_ch.collect()
-        //file(y) from kaiju2krona_ch.collect()
-        file("krona_db/taxonomy.tab") from krona_db_ch
-    
-    output:
-        file("*_taxonomy_krona.html")
-
-    when:
-        !params.skip_krona
-    
-    script:
-    """
-    mkdir -p krona
-    ktImportTaxonomy -o kraken2_taxonomy_krona.html -tax krona_db $x
-    """
-}
diff --git a/nextflow/amr-on-wb/nextflow.config b/nextflow/amr-on-wb/nextflow.config
index b6b36f4..2204da3 100755
--- a/nextflow/amr-on-wb/nextflow.config
+++ b/nextflow/amr-on-wb/nextflow.config
@@ -86,7 +86,7 @@ profiles {
 
     google.region  = "${GCS_BUCKET_LOCATION}"
     google.project = "$GOOGLE_CLOUD_PROJECT"
-    google.batch.serviceAccountEmail = "$GOOGLE_SERVICE_ACCOUNT_EMAIL"
+    google.batch.serviceAccountEmail = "pet-277205028424080dda892@vwb-dev-beaming-sprout-9366.iam.gserviceaccount.com"
     google.batch.bootDiskSize = '50 GB'
     google.batch.usePrivateAddress = true
     google.batch.network = "projects/${GOOGLE_CLOUD_PROJECT}/global/networks/default"
@@ -102,19 +102,19 @@ profiles {
     includeConfig "config/google_batch_resources.config"
 
     process.executor = 'google-batch'
-    process.container = "us-central1-docker.pkg.dev/${GOOGLE_CLOUD_PROJECT}/${GOOGLE_ARTIFACT_REPO}/amrplusplus-workbench:latest"
+    process.container = "us-central1-docker.pkg.dev/vwb-dev-beaming-sprout-9366/nf-containers/amrplusplus-workbench:latest"
     process.errorStrategy = { task.exitStatus==50001 ? 'retry' : 'terminate' }
     process.maxRetries = 5
 
-    workDir = "gs://${GCS_BUCKET}/scratch"
+    workDir = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/scratch"
 
-    google.region  = "${GCS_BUCKET_LOCATION}"
-    google.project = "$GOOGLE_CLOUD_PROJECT"
-    google.batch.serviceAccountEmail = "$GOOGLE_SERVICE_ACCOUNT_EMAIL"
+    google.region  = "us-central1"
+    google.project = "vwb-dev-beaming-sprout-9366"
+    google.batch.serviceAccountEmail = "pet-277205028424080dda892@vwb-dev-beaming-sprout-9366.iam.gserviceaccount.com"
     google.batch.bootDiskSize = '50 GB'
     google.batch.usePrivateAddress = true
-    google.batch.network = "projects/${GOOGLE_CLOUD_PROJECT}/global/networks/network"
-    google.batch.subnetwork = "projects/${GOOGLE_CLOUD_PROJECT}/regions/${GCS_BUCKET_LOCATION}/subnetworks/subnetwork"
+    google.batch.network = "projects/vwb-dev-beaming-sprout-9366/global/networks/network"
+    google.batch.subnetwork = "projects/vwb-dev-beaming-sprout-9366/regions/us-central1/subnetworks/subnetwork"
     google.httpConnectTimeout = '10m'
     google.httpReadTimeout = '10m'
     google.batch.maxSpotAttempts = 5
diff --git a/nextflow/amr-on-wb/params_google_batch.config b/nextflow/amr-on-wb/params_google_batch.config
index 019a50e..77185e1 100644
--- a/nextflow/amr-on-wb/params_google_batch.config
+++ b/nextflow/amr-on-wb/params_google_batch.config
@@ -1,20 +1,18 @@
 /* * Google Batch Configuration File
  * This file sets all parameters for running on Google Cloud Batch.
- * It uses the 'GCS_BUCKET' environment variable to define paths.
- */ 
-
-// Grabs the GCS_BUCKET environment variable. Defaults to 'nf-files' if not set.
-def gcs_bucket = System.getenv("GCS_BUCKET") ?: "nf-files"
+ */
 
 params {
     /* Display help message */
     help = false
 
+    pipeline = "fast_AMR"
+
     // -----------------------------------------------------------------
     //  Input Data
     // -----------------------------------------------------------------
     /* Location of forward and reverse read pairs */
-    reads = "gs://${gcs_bucket}/data/raw/*_R{1,2}.fastq.gz"
+    reads = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/raw/*_R{1,2}.fastq.gz"
 
     /* Optional input for bam files for use with "--pipeline bam_resistome" */
     bam_files = null
@@ -23,23 +21,23 @@ params {
     //  Reference Databases
     // -----------------------------------------------------------------
     /* Location of reference/host genome */
-    host = "gs://${gcs_bucket}/data/host/chr21.fasta.gz"
+    host = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/host/chr21.fasta.gz"
 
     /* Host index files created with bwa */
-    host_index = "gs://${gcs_bucket}/data/host/chr21.fasta.gz*"
+    host_index = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/host/chr21.fasta.gz*"
 
     /* Location of amr index files with wildcard - set to null to build automatically */
     amr_index = null
 
     /* Location of antimicrobial resistance (MEGARes) database */
-    amr = "gs://${gcs_bucket}/data/amr/megares_database_v3.00.fasta"
+    amr = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/amr/megares_database_v3.00.fasta"
 
     /* Location of amr annotation file */
-    annotation = "gs://${gcs_bucket}/data/amr/megares_annotations_v3.00.csv"
+    annotation = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/amr/megares_annotations_v3.00.csv"
 
-    /* Kraken database location */   
+    /* Kraken database location */
     kraken_db = null
-    
+
     /* Kraken confidence score */
     kraken_confidence = 0.0
 
@@ -47,13 +45,13 @@ params {
     //  Output
     // -----------------------------------------------------------------
     /* Output directory - Saved to Cloud Storage */
-    output = "gs://${gcs_bucket}/results/test_results"
+    output = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/results/test_results"
 
     // -----------------------------------------------------------------
     //  Pipeline Logic & Analysis Toggles
     // -----------------------------------------------------------------
     /* Add SNP analysis */
-    snp = "Y"
+    snp = "N"
 
     /* Add deduplicaation analysis */
     deduped = "N"
@@ -66,7 +64,7 @@ params {
     //  Trimming Parameters (Trimmomatic)
     // -----------------------------------------------------------------
     /* Adapters file location */
-    adapters = "gs://${gcs_bucket}/data/adapters/nextera.fa"
+    adapters = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/adapters/nextera.fa"
 
     leading = 3
     trailing = 3
@@ -95,7 +93,7 @@ params {
     //  Other Tools
     // -----------------------------------------------------------------
     /* multiQC config folder */
-    multiqc = "gs://${gcs_bucket}/data/multiqc"
+    multiqc = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/multiqc"
 
     /* Qiime2 Parameters */
     p_trim_left_f = 25
@@ -104,7 +102,7 @@ params {
     p_trunc_len_r = 220
 
     /* qiime2 bayes classifier */
-    dada2_db = "gs://${gcs_bucket}/data/qiime/gg-13-8-99-515-806-nb-classifier.qza"
+    dada2_db = "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/qiime/gg-13-8-99-515-806-nb-classifier.qza"
 }
 
 // -----------------------------------------------------------------
@@ -124,4 +122,4 @@ env {
     /* These next tools are optional depending on which analyses you want to run */
     KRAKEN2 = "kraken2"
     QIIME = "qiime"
-}
+}
\ No newline at end of file
diff --git a/nextflow/amr-on-wb/params_google_batch.yaml b/nextflow/amr-on-wb/params_google_batch.yaml
new file mode 100644
index 0000000..66196db
--- /dev/null
+++ b/nextflow/amr-on-wb/params_google_batch.yaml
@@ -0,0 +1,31 @@
+pipeline: "fast_AMR"
+reads: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/raw/*_R{1,2}.fastq.gz"
+bam_files: null
+host: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/host/chr21.fasta.gz"
+host_index: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/host/chr21.fasta.gz*"
+amr_index: null
+amr: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/amr/megares_database_v3.00.fasta"
+annotation: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/amr/megares_annotations_v3.00.csv"
+kraken_db: null
+kraken_confidence: 0.0
+output: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/results/test_results"
+snp: "N"
+deduped: "N"
+prefix: "AMR"
+threads: 4
+adapters: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/adapters/nextera.fa"
+leading: 3
+trailing: 3
+slidingwindow: "4:15"
+minlen: 36
+threshold: 80
+min: 5
+max: 100
+skip: 5
+samples: 1
+multiqc: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/multiqc"
+p_trim_left_f: 25
+p_trim_left_r: 26
+p_trunc_len_f: 225
+p_trunc_len_r: 220
+dada2_db: "gs://sam-nextflow-vwb-dev-beaming-sprout-9366/amr-on-wb/data/qiime/gg-13-8-99-515-806-nb-classifier.qza"
\ No newline at end of file
diff --git a/nextflow/amr-on-wb/scripts/upload_data.sh b/nextflow/amr-on-wb/scripts/upload_data.sh
index 08a44c9..17d3084 100755
--- a/nextflow/amr-on-wb/scripts/upload_data.sh
+++ b/nextflow/amr-on-wb/scripts/upload_data.sh
@@ -26,4 +26,4 @@ source "$CONFIG_FILE"
 DATA_DIR="${SCRIPT_DIR}/../data"
 
 # Upload data to GCS bucket
-gcloud storage cp -r "${DATA_DIR}" gs://${GCS_BUCKET}/
+gcloud storage cp -r "${DATA_DIR}" gs://${GCS_BUCKET}/amr-on-wb/