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Add reconstructed cognitive files and chat logsFiles added:- src/cognitive/substrate.rs#11

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Add reconstructed cognitive files and chat logsFiles added:- src/cognitive/substrate.rs#11
AdaWorldAPI wants to merge 1 commit intomainfrom
feature/cognitive-reconstruction

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Add reconstructed cognitive files and chat logsFiles added:- src/cognitive/substrate.rs (587 lines) - EXTRACTED from transcript- src/cognitive/grammar_engine.rs (569 lines) - EXTRACTED from transcript - src/cognitive/unified_fabric.rs (598 lines) - RECONSTRUCTED based on architecture- src/cognitive/mod.rs - Updated to include new modules- RECONSTRUCTION_NOTES.md - Documents recovery methodology- .chatlog/ - Sanitized session transcriptsSee RECONSTRUCTION_NOTES.md for details on what was recovered vs reconstructed.DO NOT MERGE without audit - unified_fabric.rs is a functional reconstruction,not an exact recovery.

…itive/substrate.rs (587 lines) - EXTRACTED from transcript- src/cognitive/grammar_engine.rs (569 lines) - EXTRACTED from transcript - src/cognitive/unified_fabric.rs (598 lines) - RECONSTRUCTED based on architecture- src/cognitive/mod.rs - Updated to include new modules- RECONSTRUCTION_NOTES.md - Documents recovery methodology- .chatlog/ - Sanitized session transcriptsSee RECONSTRUCTION_NOTES.md for details on what was recovered vs reconstructed.DO NOT MERGE without audit - unified_fabric.rs is a functional reconstruction,not an exact recovery.
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💡 Codex Review

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Reviewed commit: fc915f1ce4

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Comment on lines +363 to +365
// mRNA field resonance
let field_resonances = self.mrna.pollinate(input);
let mrna_resonance = if field_resonances.is_empty() {

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P2 Badge Avoid double pollinating mRNA during query

The unified query() path mutates the mRNA field by calling self.mrna.pollinate(input). In CognitiveFabric::cognitive_cycle, the same input is already pollinated just before query() runs, so each cycle inserts the same fingerprint twice. That inflates resonance counts, shifts the field superposition faster than intended, and can skew downstream collapse/butterfly decisions. Consider making query() read-only (e.g., use a snapshot or superposition similarity) or pass in the previously computed resonances instead of re-pollinating.

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Comment on lines +175 to +177
pub fn set_thinking_style(&self, style: ThinkingStyle) {
// Update mRNA field
self.mrna.set_style(style);

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P2 Badge Fix lock-order inversion between style updates and query

This method acquires the mRNA write lock (self.mrna.set_style) and only then takes the state RwLock; query() does the reverse (it holds a state read lock and later calls self.mrna.pollinate). Under concurrent use, that inverted lock order can deadlock when a style update races with a query. Consider enforcing a consistent lock order or dropping the state lock before any mRNA mutation.

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AdaWorldAPI pushed a commit that referenced this pull request Feb 14, 2026
Consolidated single source of truth:
- 11 issues (was 8), now includes CLAM integration gaps (#9),
  CausalCertificate as missing crown jewel (#10), and 31 unwired
  cognitive primitives (#11)
- Doc vs Code vs CLAM science cross-reference tables
- 8-week consolidated priority (was 4): weeks 1-4 architecture,
  weeks 5-8 CLAM integration
- Earned vs Aspirational section with honest assessment
- CLAM_HARDENING phases verified against actual codebase

https://claude.ai/code/session_01NocTBszN8LoR9Vrc7Tn4oF
AdaWorldAPI pushed a commit that referenced this pull request Feb 16, 2026
…a layers

Layer 9 of the qualia stack. Maps to Python's AgentState (bighorn/agent_state.py),
IntimateEngine.Self (intimate_engine.py), and LivingFrameState (living_frame.py).

New types:
- AgentState: Unified meta-state composing Texture + FeltPath + Reflection +
  Volition + Ghosts + Rung + Council into a single coherent self-portrait
- CoreAxes: α/γ/ω/φ meta-axes derived from substrate (not stored)
- FeltPhysics: staunen/wisdom/ache/libido/lingering from substrate signals
- SelfDimensions: 10 mutable self-model dimensions with bounded shifts (±0.1)
- MomentAwareness: Per-frame state (density, tension, katharsis, presence)
- PresenceMode: Wife/Work/Agi/Hybrid/Neutral
- AgentMode: Neutral/Explore/Exploit/Integrate/Rest/Grieve/Celebrate
- InnerMode: 8 intimate reflection modes with self-selecting choice logic
- InterventionType: 7 living frame intervention types

Key methods:
- AgentState::compute() — build from all qualia layers
- to_hints() — 7 key values for LLM prompt injection
- qualia_preamble() — full felt-sense text for system prompt (INTEGRATION_SPEC Layer A)
- SelfDimensions::shift() — bounded dimension change with audit trail
- InnerMode::choose() — self-selecting based on current dimensions

27/27 tests passing. No regressions (166/167 qualia tests, 1 pre-existing).

HANDOVER.md updated with:
- Layer 9 documentation
- 3 new architectural insights (#9 AgentState, #10 Contracts, #11 Translation)
- 14 new Python→Rust mapping entries
- Full list of Python reference files received this session

https://claude.ai/code/session_01KJ2r3qXezGBXK8HutztJdh
AdaWorldAPI pushed a commit that referenced this pull request Feb 16, 2026
…a layers

Layer 9 of the qualia stack. Maps to Python's AgentState (bighorn/agent_state.py),
IntimateEngine.Self (intimate_engine.py), and LivingFrameState (living_frame.py).

New types:
- AgentState: Unified meta-state composing Texture + FeltPath + Reflection +
  Volition + Ghosts + Rung + Council into a single coherent self-portrait
- CoreAxes: α/γ/ω/φ meta-axes derived from substrate (not stored)
- FeltPhysics: staunen/wisdom/ache/libido/lingering from substrate signals
- SelfDimensions: 10 mutable self-model dimensions with bounded shifts (±0.1)
- MomentAwareness: Per-frame state (density, tension, katharsis, presence)
- PresenceMode: Wife/Work/Agi/Hybrid/Neutral
- AgentMode: Neutral/Explore/Exploit/Integrate/Rest/Grieve/Celebrate
- InnerMode: 8 intimate reflection modes with self-selecting choice logic
- InterventionType: 7 living frame intervention types

Key methods:
- AgentState::compute() — build from all qualia layers
- to_hints() — 7 key values for LLM prompt injection
- qualia_preamble() — full felt-sense text for system prompt (INTEGRATION_SPEC Layer A)
- SelfDimensions::shift() — bounded dimension change with audit trail
- InnerMode::choose() — self-selecting based on current dimensions

27/27 tests passing. No regressions (166/167 qualia tests, 1 pre-existing).

HANDOVER.md updated with:
- Layer 9 documentation
- 3 new architectural insights (#9 AgentState, #10 Contracts, #11 Translation)
- 14 new Python→Rust mapping entries
- Full list of Python reference files received this session

https://claude.ai/code/session_01KJ2r3qXezGBXK8HutztJdh
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